Citrus Sinensis ID: 008540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560--
Protein Sequence
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMSVDSKA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccccccEEEEEcccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccEEEEEEEEEEcccEEEEccccEEEEEccccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccHHHHHHHHccccEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEEEcccccccHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHcccccccEEcHHHcEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEEEcccccEEEccccccccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEcccccccEEccccccHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mdedfdipaanemdadmdlpddapmmkvgeekeignQGLKKKLVkegegwdtpengdevevhytgtlldgtqfdssrdrstpfkftlgqgnvikgWDIGIKTmkkgenavftippelaygesgspptippnatlqfDVELLSWTSVKDICKDGGIIKKILKegekwenpkdlDEVLVNYEARLEdgmvvgkadgveftvkdghfcPTLAKAVKTMKKGEKVLLAVkpqygfgekgksasgnegavppnaTLQIALELVSWKTVSEITDDKKVIKKILKegdgferpnegaVVKVKLIGklqdgtvfvkkgHSEEEqlfefktdeeQVIDGLDRAVITMKKNEVALLTIapeyafgsaesqqelavvppnstvHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKaleidpdnrdVKLEYKTLKEKMKEYNKKEAKFYGNMfakmtepkeaepmsvdska
Flexible Loop (DISEMBL)
mdedfdipaanemdadmdlpDDAPMMKVGeekeignqglkkKLVKEgegwdtpengdEVEVHYTGTLLDGTQFDSSRDRSTpfkftlgqgnvikGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIlkegekwenpkdlDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKtvseitddkkVIKKIlkegdgferpnegavVKVKLIGKLQDGTVFVKKGHSEEeqlfefktdeeqVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSfekekeswdmNTEEKIeaagkkkeqgntlfkagkyaraskrYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCtkvldldsrnVKALYRRAQAYIQMADLDLAEFDIKKaleidpdnrdvKLEYKTLKEKMKEYNKKEAKFYGNMFAKmtepkeaepmsvdska
Low Complexity Region (SEG)
MDEDFDIPAANEmdadmdlpddapmmKVGEEKEIGNQglkkklvkegegWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVkdickdggiikkilkegekWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTeekieaagkkkeQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMSVDSKA
Disordered region (IsUnstruct)
**********************************************************VEVHYTGTLLDGT**********PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY***********NATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF*****************ATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA****ELAVVPPNSTVHYEVELVSF****************************FKAGKYARASKRYEKAVKYIEYDTSFGD****QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK****************Y**********************
Disordered Region (DISOPRED)
****FDI***********************E*EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG***********AVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ****VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS******KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG*********************
Disordered Region (DISEMBL)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGE*********GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE*************
Disordered Region (DISPRO)
*************DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPK***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDxxxxxxxxxxxxxxxxxxxxxEAKFYGNMFAKMTEPKEAEPMSVDSKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	562	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.973	0.992	0.821	0.0
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.973	0.946	0.788	0.0
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.982	0.987	0.788	0.0
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.681	0.834	0.375	8e-69
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.681	0.834	0.365	1e-68
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.681	0.836	0.365	4e-66
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.681	0.836	0.360	1e-65
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.681	0.836	0.370	1e-63
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.699	0.861	0.356	1e-62
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.685	0.842	0.353	4e-61

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/550 (82%), Positives = 500/550 (90%), Gaps = 3/550 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query: 539 FYGNMFAKMT 548
           FYGNMFAK++
Sbjct: 540 FYGNMFAKLS 549

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/554 (78%), Positives = 500/554 (90%), Gaps = 7/554 (1%)

Query: 16  DMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDS 75
           D D  D AP +K+GEE EIG  GLKKKLVKE E WDTPENGDEVEVHYTGTLLDGT+FDS
Sbjct: 25  DNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDS 84

Query: 76  SRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQ 135
           SRDR TPFKFTLGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQ
Sbjct: 85  SRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQ 144

Query: 136 FDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV 195
           FDVEL++W SVKDIC DGG+ KKI+ EGEKWE PKDLDEV V YEARLEDG +VGK+DGV
Sbjct: 145 FDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGV 204

Query: 196 EFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIA 254
           EFTVK+GHFCP L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI 
Sbjct: 205 EFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQID 264

Query: 255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSE 313
           LELVSWKTV E+TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E
Sbjct: 265 LELVSWKTVVEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEE 324

Query: 314 EEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVH 373
           +E+ FEFK DEEQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+
Sbjct: 325 DEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVY 384

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           YEVELVSF KEKESWDMNT+E+IEAAGKKKE+GN LFKAGKYARASKRYE+ VKYIEYD+
Sbjct: 385 YEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDS 444

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +F +EEKK++K LK+ACNLN+AACKLKLKDYK+A KL TKVL++DSRNVKA+YRRA AY+
Sbjct: 445 TFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYL 504

Query: 494 QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP--- 550
           + ADLDLAE DIKKALEIDPDN++VK+EYK LKEK+KEYNKK+AKFY NM +KM EP   
Sbjct: 505 ETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEPHKG 564

Query: 551 --KEAEPMSVDSKA 562
             KEA+ MS+D+KA
Sbjct: 565 TQKEAQAMSIDTKA 578

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/558 (78%), Positives = 488/558 (87%), Gaps = 6/558 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPD----DAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           MD+DFDIPA ++M     + D    + P MKVGEE EIG QGLKKKL+KEGEGWDTPE G
Sbjct: 1   MDDDFDIPAGDDMMMGDGMGDFGGAEGPGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDG +FDSSRDR   FKF LGQG VIKGWD GIKTMKKGENA+FTIPPE
Sbjct: 61  DEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPE 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYGESGSPPTIP NATLQFDVELLSWTSV+DI KDGGI KKILKEG+KWENPKD DEV 
Sbjct: 121 LAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVF 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEARLEDG VV K++GVEFTVKDGH CP LAKAVKTMKKGEKVLLAVKPQYGFGE G+
Sbjct: 181 VKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGR 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            A+G  GAVPPNA+L I LELVSWKTV+EI DDKK++KK+LKE +G+ERPNEGAVV VK+
Sbjct: 241 PAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKI 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
            GKLQDGTVF+KKGH E+E  FEFKTDEE VI+GLDRAV+ MKK EVAL+TI PEYA+GS
Sbjct: 301 TGKLQDGTVFLKKGHDEQEP-FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
            ES+Q+ A+VPPNSTV YEVELVSF K+KESWD+N  EKIEAAG KKE+GN LFK+GKYA
Sbjct: 360 TESKQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYA 418

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476
           RASKRYEKA K+IEYDTSF ++EKKQ+K LK+ CNLNNAACKLKLKDYKQAEKLCTKVL+
Sbjct: 419 RASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVLE 478

Query: 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           LDSRNVKALYRRAQAY Q+ADL+LAE DIKKALEIDP+NRDVKL YKTLKEK+KE NKK+
Sbjct: 479 LDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEINKKD 538

Query: 537 AKFYGNMFAKMTEPKEAE 554
           AKFY NMF+KMT+P   E
Sbjct: 539 AKFYSNMFSKMTKPSAEE 556

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  261 bits (668), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 153/408 (37%), Positives = 242/408 (59%), Gaps = 25/408 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D  VF ++          F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKD-QVFDRRE-------LRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SF
Sbjct: 195 GESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSA--GKEKFQIPPNAELKYEIHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF DE+ +
Sbjct: 253 EKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAE 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
             D +K L++ P N+  K +    ++++++  +KE K Y NMF ++ E
Sbjct: 373 RADFQKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAE 420

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  261 bits (666), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 240/408 (58%), Gaps = 25/408 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               A+ TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SF
Sbjct: 195 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE +
Sbjct: 253 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D +LA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
             D +K L++ P+N+  K +    +++++    +E K Y NMF ++ E
Sbjct: 373 RADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 420

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  253 bits (645), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 235/408 (57%), Gaps = 25/408 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     A+G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----AAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ RPN+GA+V+V L G  +D  +F       +++   F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKD-RLF-------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVRLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++ EK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +  AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
             D +K L++ P N+  K +    +++ +    +E K Y NMF ++ E
Sbjct: 373 RADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAE 420

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  251 bits (641), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/408 (36%), Positives = 232/408 (56%), Gaps = 25/408 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E     D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+D+   +I++I   G+G+ RPN+GA+V+V L G   D           +++   F+  E
Sbjct: 143 TEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK K SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +  AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
             D +K L++ P N+  K +    +++ +    +E K Y NMF ++ E
Sbjct: 373 RADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAE 420

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  244 bits (624), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 240/408 (58%), Gaps = 25/408 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGELCRITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           TDD+   +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLF--------DQRELRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E ++L + P YAFG+A   +E   +PP + + YEV L SF
Sbjct: 195 GESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNA--GKEKFQIPPYAELKYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
             D +K L++ P N+  K +    ++++++   +E K Y NMF ++ E
Sbjct: 373 RADFQKVLQLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMFERLAE 420

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 227/412 (55%), Gaps = 19/412 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+  L DG     +        F++  G    
Sbjct: 29  KDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TMKKGE   L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----SAGHLQKIPSNATLFFEIELLDFKG-EDL 142

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  VI++I ++G+G+  PNEGA VKV L G     T   +      + +F     E+ 
Sbjct: 143 FEDSGVIRRIKRKGEGYSNPNEGATVKVHLEGCCGGRTFDCR------DVVFVVGEGEDH 196

Query: 327 VID-GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
            I  G+D+A++ M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK K
Sbjct: 197 DIPIGIDKALVKMQREEQCILYLGPRYGFG--EAGKPKFGIDPNAELMYEVTLKSFEKAK 254

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           ESW+M+T+EK+  A   KE+G   FK GKY +A  +Y K V ++E +    ++E K +++
Sbjct: 255 ESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWLEMEYGLSEKESKASES 314

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M D + A+ D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYNKAVECCDKALGLDSANEKGLYRRGEAQLLMNDFESAKGDF 374

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMS 557
           +K L ++P NR  +L+    + K KE+N+++ + Y NMF K  E    E  S
Sbjct: 375 EKVLAVNPQNRAARLQISMCQRKAKEHNERDRRVYANMFKKFAERDAKEEAS 426

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 143/404 (35%), Positives = 229/404 (56%), Gaps = 19/404 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y  +L +G     +    +   F++  G    
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TMKKGE   L  KP+Y +G     A+G+   +P NATL   +EL+++K   ++
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLNFKG-EDL 142

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++  + G+G+  PNEGA V++ L G+   G VF  +     +  F     E+ 
Sbjct: 143 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDH 196

Query: 327 VID-GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
            I  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK K
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAK 254

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           ESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K +++
Sbjct: 255 ESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 314

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A+ D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
           +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K  E
Sbjct: 375 EKVLEVNPQNKAARLQIVVCQKKAKEHNERDRRIYANMFKKFAE 418

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	1.0	0.984	0.852	0.0
224065421	575	predicted protein [Populus trichocarpa]	0.998	0.975	0.845	0.0
255589766	574	peptidylprolyl isomerase, putative [Rici	1.0	0.979	0.836	0.0
255587695	583	peptidylprolyl isomerase, putative [Rici	0.975	0.939	0.858	0.0
355329948	573	FK506-binding protein [Nicotiana tabacum	0.998	0.979	0.834	0.0
356527318	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.960	0.992	0.830	0.0
449463204	553	PREDICTED: peptidyl-prolyl cis-trans iso	0.973	0.989	0.839	0.0
356567794	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.960	0.992	0.821	0.0
297831424	551	peptidylprolyl isomerase [Arabidopsis ly	0.971	0.990	0.830	0.0
9294180	555	peptidylprolyl isomerase; FK506-binding	0.973	0.985	0.821	0.0

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/571 (85%), Positives = 525/571 (91%), Gaps = 9/571 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA EM+ DMDLPD++P++KVGEEKEIG QGLKKKLVKEGEGWDTPENGDEVE
Sbjct: 1   MDEDFDIPAAEEMNDDMDLPDESPILKVGEEKEIGKQGLKKKLVKEGEGWDTPENGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGS  TIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKDLDEV V YE
Sbjct: 121 ESGSSTTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDLDEVFVKYE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           ARLEDG +V K+DGVEFTVK+ +FCP L+KAVKTMKKGEKV+L VKPQYGFGEKGK ASG
Sbjct: 181 ARLEDGTLVAKSDGVEFTVKEDYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPASG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            EGAVPPNATL+I LELVSWKTV+E+TDDKKVIKKILKEG+G+ERPNEGAVVK+KLIGKL
Sbjct: 241 EEGAVPPNATLEITLELVSWKTVTEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E LFEFKTD+EQVIDGLDRAV+TMKK EVALLTI  +YAFGS+ES 
Sbjct: 301 QDGTVFLKKGHGEGEDLFEFKTDDEQVIDGLDRAVMTMKKGEVALLTIHSDYAFGSSESS 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV+YEVEL SF K+KESWDMNTEEKIEAAGKKKE+GN LFKAGKYARASK
Sbjct: 361 QELAVVPPNSTVYYEVELESFVKDKESWDMNTEEKIEAAGKKKEEGNVLFKAGKYARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKA KYIEYD+SFG+EEKKQAK LKV CNLNNAACKLKLKDYK+AEKLCTKVLD+ S+
Sbjct: 421 RYEKAAKYIEYDSSFGEEEKKQAKTLKVTCNLNNAACKLKLKDYKEAEKLCTKVLDIQSK 480

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAYI +ADLDLAEFDIKKALEIDPDNRDVKLEY+TLKEKMKEYNKKEAKFY
Sbjct: 481 NVKALYRRAQAYIHLADLDLAEFDIKKALEIDPDNRDVKLEYRTLKEKMKEYNKKEAKFY 540

Query: 541 GNMFAKMTE---------PKEAEPMSVDSKA 562
           GNMFA+M +          KEAEPMS+DSKA
Sbjct: 541 GNMFARMNKLEALETNKATKEAEPMSIDSKA 571

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/576 (84%), Positives = 530/576 (92%), Gaps = 15/576 (2%)

Query: 1   MDEDFDIPAANEMDAD----MDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           M+EDF++P  +EM  +    +DLPD+ PM+KVGEEKEIGNQGLKKKL+KEGEGWDTP+NG
Sbjct: 1   MEEDFELPTGDEMMMNNGDQLDLPDEGPMLKVGEEKEIGNQGLKKKLLKEGEGWDTPDNG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKKGENA+FTIP +
Sbjct: 61  DEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKGENALFTIPAD 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYG SGSPPTIPPNATLQFDVELLSW+S+KDICKDGGI KKIL EGEKWENPKDLDEVL
Sbjct: 121 LAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVEGEKWENPKDLDEVL 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEA+LEDG V+ ++DGVEFTVKDGHFCP LA+AVKTMK GEKVLL VKPQYGFGEKGK
Sbjct: 181 VRYEAQLEDGSVIARSDGVEFTVKDGHFCPALARAVKTMKMGEKVLLTVKPQYGFGEKGK 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            ASG+E AVPPNA +QI LELV+WKTV+E+TDDKKVIKKILKEGDG++RPNEGAVVKVKL
Sbjct: 241 PASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDGYDRPNEGAVVKVKL 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
           IGKLQDGTVF KKG  + E LFEFKTDEEQVIDGLDRAV TMKK E+ALLTIAPEYAFGS
Sbjct: 301 IGKLQDGTVFFKKGQDDSE-LFEFKTDEEQVIDGLDRAVSTMKKGELALLTIAPEYAFGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
           +ESQQELAVVPPNSTV YE+ELVSF+KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYA
Sbjct: 360 SESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIEAAGKKKEEGNVLFKAGKYA 419

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476
           +ASKRYEKAVKYIEYD+SF +EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL+
Sbjct: 420 KASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLE 479

Query: 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           L+SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEIDPDNRDVKLE+KTLKEKMKEYNKKE
Sbjct: 480 LESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNRDVKLEHKTLKEKMKEYNKKE 539

Query: 537 AKFYGNMFAKMT----------EPKEAEPMSVDSKA 562
           AKFYGNMFAKM+          E KEAEPMSVDS+A
Sbjct: 540 AKFYGNMFAKMSKVGSLESNKAEAKEAEPMSVDSEA 575

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/574 (83%), Positives = 528/574 (91%), Gaps = 12/574 (2%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKVLDL+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEI+PDNRDVKLEY+TLK+KM+E NKKEAK
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRDVKLEYRTLKDKMRELNKKEAK 540

Query: 539 FYGNMFAKM----------TEPKEAEPMSVDSKA 562
           FYGNMFAKM          ++  EA  MS+DSKA
Sbjct: 541 FYGNMFAKMNKLGPLDSNNSKSNEAGQMSIDSKA 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587695|ref|XP_002534361.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223525436|gb|EEF28026.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/550 (85%), Positives = 517/550 (94%), Gaps = 2/550 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKVLDL+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEI+PDNRDVKLEY+TLK+KM+E NKKEAK
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRDVKLEYRTLKDKMRELNKKEAK 540

Query: 539 FYGNMFAKMT 548
           FYGNMFAKM 
Sbjct: 541 FYGNMFAKMN 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/574 (83%), Positives = 521/574 (90%), Gaps = 13/574 (2%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP A  MD DMDLPDD P+MKVGEEKEIGNQGLKKKLVKEGEGW+TPE GDEVE
Sbjct: 1   MEEDFDIPPAEGMDEDMDLPDD-PIMKVGEEKEIGNQGLKKKLVKEGEGWETPEAGDEVE 59

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR  PFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 60  VHYTGTLLDGTKFDSSRDRGDPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 119

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSW SVKDICKDGGI KKIL EGEKWENPKD DEVLV YE
Sbjct: 120 ESGSPPTIPPNATLQFDVELLSWVSVKDICKDGGIFKKILAEGEKWENPKDFDEVLVKYE 179

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A LE+G VVGK+DGVEFTV+DG+FCP LAKAVKTMKKGEKV L VKPQYGFGEKGK AS 
Sbjct: 180 ALLENGTVVGKSDGVEFTVQDGYFCPALAKAVKTMKKGEKVQLTVKPQYGFGEKGKPASS 239

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           + GAVP NATLQI LELVSWK VS +TDDKKV+KKILKEG+G+E+PNEGAVVK+KLIGKL
Sbjct: 240 DGGAVPSNATLQINLELVSWKIVSSVTDDKKVVKKILKEGEGYEKPNEGAVVKLKLIGKL 299

Query: 301 QDGTVFVKKGHS--EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           QDGTVF+KKGH    E++LFEFKTDEEQVIDGLDRAV+TMKK EVALLTIAPEYAFGS+E
Sbjct: 300 QDGTVFIKKGHDGENEDELFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+Q+LAV+PPNSTVHYEVELVSF K+KESWDMNT EKIEAAGKKKE+GN LFKAGKY RA
Sbjct: 360 SKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYTRA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKA K+IEYDTSF +EEKKQ+KALK++CNLNNAACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY+ MADLDLAEFDIKKALEIDP+NRDVKLEYK LK+K+KE+NKK+AK
Sbjct: 480 STNVKALYRRAQAYMNMADLDLAEFDIKKALEIDPNNRDVKLEYKALKDKVKEFNKKDAK 539

Query: 539 FYGNMFAKM----------TEPKEAEPMSVDSKA 562
           FYGNMFAK+          + PKE EPMS+DSKA
Sbjct: 540 FYGNMFAKLNKLETANSSKSAPKEPEPMSIDSKA 573

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527318|ref|XP_003532258.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/548 (83%), Positives = 502/548 (91%), Gaps = 8/548 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        KVGEE+EIG++GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------KVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G +V K+DGVEFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDG  F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAPEYAFGS+ESQ
Sbjct: 293 QDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKAGK+ARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKVLDL+S 
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLEST 472

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAY+Q+ DLDLAE DIKKALEIDP+NRDVKLEY+TLKEK+K  N+KEA+FY
Sbjct: 473 NVKALYRRAQAYMQLTDLDLAELDIKKALEIDPNNRDVKLEYRTLKEKVKANNRKEAQFY 532

Query: 541 GNMFAKMT 548
           GNM  KMT
Sbjct: 533 GNMINKMT 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463204|ref|XP_004149324.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus] gi|449515125|ref|XP_004164600.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus]

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/547 (83%), Positives = 510/547 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA +M  D+DLPD    +KVGEEKEIGNQGLKKKL+KEGEGW TPE+GDEVE
Sbjct: 1   MDEDFDIPAAPDMPDDLDLPDQTVPLKVGEEKEIGNQGLKKKLLKEGEGWVTPESGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKK E A+FTIPP+LAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPP+ATLQFDVELLSWTSVKDICKDGGI KKIL EG+KWENPKDLDEVLVN+E
Sbjct: 121 ESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG ++ KADGVEFTV DG+FCP LAKAVKTMK GEK LL VKPQYGFGEKGKSA G
Sbjct: 181 AKLEDGTLIAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSARG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           NEGAVPPNA+L I LELVSWKTVSE+T DKKVIKKILKEG+G+E+PN+GA+VKVKLIGKL
Sbjct: 241 NEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
            DG +F++KGH + E+ +EFKTDEEQVIDGLD+AV+TMKK E+ALLTIAPEYAFGS+ESQ
Sbjct: 301 GDGKIFLRKGHEDGEEPYEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQ 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           Q+LAVVPPNSTV+YEVELV+F+KEKESWDMN +EKIEAAGKKKE+GN LFK+GK+ARASK
Sbjct: 361 QDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKLKLK Y +AEKLCTKVL+L+S 
Sbjct: 421 RYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESS 480

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAYIQ+ADLDLAEFDIKKAL+IDP+NRDVKLEYKTLKEK+KEYNKK+AKFY
Sbjct: 481 NVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFY 540

Query: 541 GNMFAKM 547
           GNMFAKM
Sbjct: 541 GNMFAKM 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567794|ref|XP_003552100.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/548 (82%), Positives = 501/548 (91%), Gaps = 8/548 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        +VGEE+EIG+ GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------EVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EGEKWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G ++ K+DG EFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGT F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAP+YAFG++ESQ
Sbjct: 293 QDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKA KYARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKVLDL+S 
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLEST 472

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQA++Q+ +LDLAE DIKKAL+IDP+NRDVKLEY+TLKEK+KE N+KEA+FY
Sbjct: 473 NVKALYRRAQAHMQLTNLDLAELDIKKALDIDPNNRDVKLEYRTLKEKVKENNRKEAQFY 532

Query: 541 GNMFAKMT 548
           GNM  KMT
Sbjct: 533 GNMINKMT 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831424|ref|XP_002883594.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata] gi|297329434|gb|EFH59853.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/548 (83%), Positives = 501/548 (91%), Gaps = 2/548 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MD DF++P   + D +MD  D A  +KVGEEKEI  QGLKKKLVKEGEG++TPENGDEVE
Sbjct: 1   MDNDFEMPPVGD-DDEMDFGDAASFLKVGEEKEI-QQGLKKKLVKEGEGYETPENGDEVE 58

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELAYG
Sbjct: 59  VHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPSELAYG 118

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           E+GSPPTIP NATLQFDVELL+W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV +E
Sbjct: 119 ETGSPPTIPANATLQFDVELLTWVSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFE 178

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK AS 
Sbjct: 179 AKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASA 238

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            +GAVPPNATL+I LELVSWKTVSE+TDD KV+KKILKEG+G+ERPNEGA VKVKLIGKL
Sbjct: 239 GDGAVPPNATLEINLELVSWKTVSEVTDDNKVMKKILKEGEGYERPNEGAAVKVKLIGKL 298

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS ESQ
Sbjct: 299 QDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQ 358

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV YEV+L++F+KE+ESWDM+TEEKIEAA KKKE+GN+ FKAGKYA ASK
Sbjct: 359 QELAVVPPNSTVTYEVDLLTFDKERESWDMSTEEKIEAASKKKEEGNSKFKAGKYALASK 418

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+S 
Sbjct: 419 RYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELEST 478

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAY++MADLDLAEFD+KKALEIDP+NR+VKLE + LKEKMKE+NKKEAKFY
Sbjct: 479 NVKALYRRAQAYMEMADLDLAEFDVKKALEIDPNNREVKLEQRRLKEKMKEFNKKEAKFY 538

Query: 541 GNMFAKMT 548
           GNMFAK+T
Sbjct: 539 GNMFAKLT 546

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294180|dbj|BAB02082.1| peptidylprolyl isomerase; FK506-binding protein [Arabidopsis thaliana]

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/550 (82%), Positives = 500/550 (90%), Gaps = 3/550 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query: 539 FYGNMFAKMT 548
           FYGNMFAK++
Sbjct: 540 FYGNMFAKLS 549

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.971	0.971	0.748	1.2e-218
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.953	0.927	0.732	2.2e-215
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.934	0.905	0.745	3e-211
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.951	0.914	0.702	7.7e-206
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.937	0.772	0.657	1.2e-191
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.617	0.609	0.459	1.3e-88
UNIPROTKB|Q657L6	422	P0468H06.14-3 "Peptidyl-prolyl	0.569	0.758	0.457	3.3e-70
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.665	0.846	0.371	8.5e-65
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.665	0.806	0.371	8.5e-65
UNIPROTKB|F1SK86	456	FKBP4 "Uncharacterized protein	0.676	0.833	0.348	1.2e-60

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 2112 (748.5 bits), Expect = 1.2e-218, P = 1.2e-218
 Identities = 411/549 (74%), Positives = 453/549 (82%)

Query:     1 MDEDFDIPAAN--EXXXXXXXXXXXXXXKVGEEKEIGNQXXXXXXXXXXXXWDTPENGDE 58
             MD +F++P                    KVGEEKEI  Q            ++TPENGDE
Sbjct:     1 MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query:    59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
             VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct:    60 VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query:   119 YGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPKDLDEVLVN 178
             YGESGSPPTIP NATLQFDVELL W SV                   WENPKDLDEVLV 
Sbjct:   120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query:   179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
             +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct:   180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query:   239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
             S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct:   240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query:   299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
             KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct:   300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query:   359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARA 418
             SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNT            +GN+ FK GKY+ A
Sbjct:   360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query:   419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
             SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct:   420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query:   479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
             S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct:   480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query:   539 FYGNMFAKM 547
             FYGNMFAK+
Sbjct:   540 FYGNMFAKL 548

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 2081 (737.6 bits), Expect = 2.2e-215, P = 2.2e-215
 Identities = 398/543 (73%), Positives = 456/543 (83%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             K+GEE EIG              WDTPENGDEVEVHYTGTLLDGT+FDSSRDR TPFKFT
Sbjct:    36 KIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFT 95

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++W SV
Sbjct:    96 LGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSV 155

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WE PKDLDEV V YEARLEDG +VGK+DGVEFTVK+GHFCP
Sbjct:   156 KDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCP 215

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIALELVSWKTVSE 265
              L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI LELVSWKTV E
Sbjct:   216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275

Query:   266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSEEEQLFEFKTDE 324
             +TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E+E+ FEFK DE
Sbjct:   276 VTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDE 335

Query:   325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
             EQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+YEVELVSF KE
Sbjct:   336 EQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKE 395

Query:   385 KESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
             KESWDMNT            +GN LFKAGKYARASKRYE+ VKYIEYD++F +EEKK++K
Sbjct:   396 KESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSK 455

Query:   445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
              LK+ACNLN+AACKLKLKDYK+A KL TKVL++DSRNVKA+YRRA AY++ ADLDLAE D
Sbjct:   456 DLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELD 515

Query:   505 IKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP-----KEAEPMSVD 559
             IKKALEIDPDN++VK+EYK LKEK+KEYNKK+AKFY NM +KM EP     KEA+ MS+D
Sbjct:   516 IKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEPHKGTQKEAQAMSID 575

Query:   560 SKA 562
             +KA
Sbjct:   576 TKA 578

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2042 (723.9 bits), Expect = 3.0e-211, P = 3.0e-211
 Identities = 393/527 (74%), Positives = 433/527 (82%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            W+TPE GDEVEVHYTGTLLDG +FDSSRDR TPFKF 
Sbjct:    35 KVGEEKEIGKQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFKFK 94

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENAVFTIPP+LAYGESGSPPTIP +ATLQFDVELLSWTSV
Sbjct:    95 LGQGQVIKGWDLGIKTMKKGENAVFTIPPDLAYGESGSPPTIPASATLQFDVELLSWTSV 154

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEV V YEARLEDG V+ K++G EFTVKDG FCP
Sbjct:   155 KDICQDGGIFKKILKEGEKWENPKDLDEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCP 214

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              LAKAVKTMKK EKVLL VKPQYGFGE G+ A+G EGAVPPNATL + LELVSWKTV+EI
Sbjct:   215 ALAKAVKTMKKAEKVLLTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEI 274

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDKK++KK+L EG G+ERPNEGAVVKVK+ GKLQDGT+F KKGH E E  FEFKTDEE+
Sbjct:   275 GDDKKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEP-FEFKTDEEE 333

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VIDG+DRAV+ MK  EVAL+TI PEYAFGS ES+Q+LAVVPPNSTV YEVELVSF K+KE
Sbjct:   334 VIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKE 393

Query:   387 SWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
             SWD+N             +GN LFK GKY RASKRYEKA K+IEYD+SF ++EKKQ+K L
Sbjct:   394 SWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
             KV CNLNNAACKLKLKDYKQAEKLCTKVL+LDS+NVKALYRRAQAY+Q+ADL+LAE DIK
Sbjct:   454 KVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIK 513

Query:   507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT-EPKE 552
             KALEIDPDNRDVKL YK LKEK+KEYNKK+AKFY NMFAKMT +P E
Sbjct:   514 KALEIDPDNRDVKLTYKNLKEKVKEYNKKDAKFYSNMFAKMTKQPAE 560

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1991 (705.9 bits), Expect = 7.7e-206, P = 7.7e-206
 Identities = 385/548 (70%), Positives = 444/548 (81%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            WD PE+GDEV+VHYTGTLLDGT+FDSSRDR TPFKF+
Sbjct:    39 KVGEEKEIGKQGLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFS 98

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD GIKTMKKGE AVFT+PPELAYGE+GSPP IPPNATL+FDVELLSW SV
Sbjct:    99 LGQGEVIKGWDEGIKTMKKGEQAVFTVPPELAYGEAGSPPAIPPNATLRFDVELLSWASV 158

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEVLV YEARLEDG VV K+DGVEF VKDG+FCP
Sbjct:   159 KDICKDGGIFKKVLAEGHKWENPKDLDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCP 218

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              L+KAVKTMKKGEKVLL VKPQYGFGE+GK ASG E AVPPNATL + LEL+SWKTV+ I
Sbjct:   219 ALSKAVKTMKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLI 278

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDK+++KK+LKEG+G+ERPN+GAVV+V+ IGKL+DGTVF KKGH  +E  FEF+TDEEQ
Sbjct:   279 GDDKRILKKVLKEGEGYERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEP-FEFRTDEEQ 337

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VI+GLDR V+TMKK EVAL+ + P++AFGS E++Q+LAVVP NSTV YEVELVSFEKEKE
Sbjct:   338 VIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE 397

Query:   387 SWDM-NTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWD+ +             +GN  FK GKYA+ASKRYEKA KYIEYD+SF D+EKKQ+KA
Sbjct:   398 SWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKA 457

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             LKV+C LNNAACKLKLK+Y++AEKLCTKVL+L+S NVKALYRR QAYI++ADL+LAE D+
Sbjct:   458 LKVSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDV 517

Query:   506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK------MTEPK-----EAE 554
             KKALEIDPDNRDVK+ YKTLKEK+KEYNK++AKFYGNMFAK      M   K     EA+
Sbjct:   518 KKALEIDPDNRDVKMVYKTLKEKIKEYNKRDAKFYGNMFAKWRKLEHMENKKVPGKQEAQ 577

Query:   555 PMSVDSKA 562
             PM++DS A
Sbjct:   578 PMAIDSAA 585

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1857 (658.8 bits), Expect = 1.2e-191, P = 1.2e-191
 Identities = 348/529 (65%), Positives = 422/529 (79%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             +VGEEKEIG +            W+ P+ GDEV+VHYTGTLLDGT+FDSSRDR  PFKFT
Sbjct:    84 EVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAPFKFT 143

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENA+FTIPPELAYGE GSPP IPPNATLQFDVEL+SW SV
Sbjct:   144 LGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISWESV 203

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENP+D DEV V YE RLEDG VV ++DGVEFTVKDGHFCP
Sbjct:   204 KDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCP 263

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              ++KAVKTMKK EK LL VKPQYGFGE+G+ A+ +E A+PPNATL I LELVSWK V+EI
Sbjct:   264 AISKAVKTMKKNEKALLTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEI 323

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              +DKK++KKIL EG+G+ERP++  +V+VKLIGKL+DGT+FV +GH  +E  FEFKTDE+Q
Sbjct:   324 GNDKKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEP-FEFKTDEDQ 382

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             V++GLD+AV++MKK EVAL+TI PEYAFGS E++Q+L+VVPPNSTV+YEVELVSF+KEKE
Sbjct:   383 VVEGLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKE 442

Query:   387 SWDMN-TXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWDM               +GN  FK  KYARASKRY KA+ +I+YD+SF +EEK+ +K 
Sbjct:   443 SWDMKENTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKP 502

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             LKV+C LNNAACKLKLKDYK+A++LCT+VL+LDS NVKA YRRAQA++ + D DLAE DI
Sbjct:   503 LKVSCKLNNAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDI 562

Query:   506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
             KKALEIDPDNRDVK+ Y+ LKEK+KE  +KE K YGNM +K+++ +++E
Sbjct:   563 KKALEIDPDNRDVKMGYRRLKEKVKEQKRKETKLYGNMISKLSKLEDSE 611

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 734 (263.4 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 166/361 (45%), Positives = 217/361 (60%)

Query:   192 ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATL 251
             A+ V FTV +G   P +  AVKTMK+GE+V L VKP+YGFG  G S  G    VPP A L
Sbjct:   171 AEAVTFTVSEGLLVPAVRVAVKTMKRGERVQLKVKPEYGFGAAGSSEYG----VPPGADL 226

Query:   252 QIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGK-LQDGTVFVKK 309
             +I L L+ W  V    ++  V+KK L E D  + RPNEGA V +++ GK L DG VF+K 
Sbjct:   227 EIELTLLGWNNVEYCNNENTVVKKTLVECDNEYRRPNEGASVTLRVTGKVLPDGPVFMKH 286

Query:   310 GHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAE---SQQELAV 365
             G   E     F T+EEQV +GL+ AV+ MKK E A++T+  P Y +G      S +   V
Sbjct:   287 GEGSE---LRFVTEEEQVPEGLELAVMKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSEV 343

Query:   366 -VPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEK 424
              VP  S + +EV+LV F   KE+W+M+             +GN  FK+GK ARA   +++
Sbjct:   344 EVPAGSRLQFEVDLVDFTNAKETWEMSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDR 403

Query:   425 AVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484
             AV  + YD SF DE K   K +K +C LN AA  LK   +K A K CT VLD+D  +VKA
Sbjct:   404 AVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAALDLKRAHWKDAVKHCTSVLDIDPTSVKA 463

Query:   485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544
             LYRRAQA++ MAD   AE D+K+ALE++PD+ DV    + LK   +E NKKEAK Y  MF
Sbjct:   464 LYRRAQAHMGMADFFEAEQDVKRALELEPDSADVLALQRRLKAAQREQNKKEAKLYSKMF 523

Query:   545 A 545
             A
Sbjct:   524 A 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q657L6 P0468H06.14-3 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 151/330 (45%), Positives = 216/330 (65%)

Query:    58 EVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
             EV+VH+TG L+DGTQF SSR+   P +F LGQ +V+ G+++ + +M+ GE A+FTIP  L
Sbjct:    75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134

Query:   118 AYGESGSP---PT-IPPNATLQFDVELLS-WTSVXXXXXXXXXXXXXXXXXXXWENPKDL 172
                ++GSP   P+ IPPN TL+F++EL++ +T +                    +     
Sbjct:   135 TMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194

Query:   173 DEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG 232
             D V V Y+A L DG  V K++GVEF++ DG FCP  A AV TMK+GE+ +L VKP+Y FG
Sbjct:   195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254

Query:   233 EKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEG-AV 291
             E+G+ + G E AVPP+ATL + L  V W  +  I +D+ + KK L+ G+      +  AV
Sbjct:   255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312

Query:   292 VKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351
             VKV+L+GKLQDGTVF ++G+ ++E  FEF  DE QVIDGLD +V+TM++ EVA  TI P+
Sbjct:   313 VKVRLLGKLQDGTVFDRRGYGDDEP-FEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371

Query:   352 YAFGSAESQQ-ELAVVPPNSTVHYEVELVS 380
             +AF +  S Q + A VP N+TV Y++EL+S
Sbjct:   372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 147/396 (37%), Positives = 236/396 (59%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KLK+Y QA + C K L+LDS N K L+RR +A++ + D +LA  D +K +++ P N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEP 555
             ++  T ++K++E ++KE K Y NMF ++ + KE +P
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRLAD-KELKP 418

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 147/396 (37%), Positives = 236/396 (59%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KLK+Y QA + C K L+LDS N K L+RR +A++ + D +LA  D +K +++ P N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEP 555
             ++  T ++K++E ++KE K Y NMF ++ + KE +P
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRLAD-KELKP 418

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|F1SK86 FKBP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 141/405 (34%), Positives = 232/405 (57%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E P   D V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    45 EMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCH 104

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++T+++   +I++I   G
Sbjct:   105 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 158

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
             +G+ RPN+GA+V+V L G  +D  +F       +++   F+  E + +D   GL++A+  
Sbjct:   159 EGYARPNDGAIVEVALEGYYKD-QIF-------DQREIRFEVGEGETMDLPCGLEKAIQR 210

Query:   338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXX 397
             M+K E +++ + P YAFGSA   +E   +PPN+ + YEV L SFEK KESW+M++     
Sbjct:   211 MEKGEHSIVYLKPSYAFGSAG--KEKFHIPPNAELKYEVHLKSFEKAKESWEMSSEEKLE 268

Query:   398 XXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
                    +G   FK GKY +A  +Y+K V ++EY++SF +E+ ++A+AL++A +LN A C
Sbjct:   269 QSSIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSNEDAQKAQALRLASHLNLAMC 328

Query:   458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
              LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA  D +K L++ P N+ 
Sbjct:   329 YLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKA 388

Query:   518 VKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMSVDSKA 562
              K +    ++++++   +E K Y NMF ++ E +    +S D +A
Sbjct:   389 AKAQLALCQQRIRKQLAREKKLYANMFERLAEEESKAKVSGDQQA 433

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJL3	FKB65_ARATH	5, ., 2, ., 1, ., 8	0.7888	0.9733	0.9463	no	no
Q43207	FKB70_WHEAT	5, ., 2, ., 1, ., 8	0.7885	0.9822	0.9874	N/A	no
Q38931	FKB62_ARATH	5, ., 2, ., 1, ., 8	0.8218	0.9733	0.9927	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	562
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-41
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	9e-40
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-23
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	6e-23
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	9e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-16
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-14
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	4e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-10
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	6e-09
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	1e-08
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	3e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-06
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	2e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	7e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	2e-04
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-04
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	8e-04
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.001
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.003
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  143 bits (364), Expect = 2e-41
 Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 49  GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN 108
           G +  + GD V VHYTG L DGT FDSS+DR  PF+FTLG G VI GWD G+  MK GE 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 109 AVFTIPPELAYGESGS-PPTIPPNATLQFDVELL 141
              TIPPELAYGE G     IPPNATL F+VELL
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score =  143 bits (363), Expect = 9e-40
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++K G+G   P+ GD V VHYTGTL+DGT FDSS DR  P +F LG   VI GWD
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGG--VIPGWD 158

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPPELAYGE G P  IPPN+TL F+VELL 
Sbjct: 159 EGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 93.8 bits (234), Expect = 3e-23
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343
           E+  +G  V V   GKL+DGTVF         + FEF     QVI G D  ++ MK  E 
Sbjct: 3   EKAKKGDTVTVHYTGKLEDGTVFDSSKD--RGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             LTI PE A+G         V+PPN+T+ +EVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAG--GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 98.3 bits (245), Expect = 6e-23
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  K+ KEG G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 147 GLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 203

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G  P IP N+TL FDVELL 
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 96.0 bits (239), Expect = 9e-23
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ +++ +GEG   P   D V VHYTG L+DGT FDSS  R  P +F +    VI GW 
Sbjct: 103 GLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWI 159

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             +  M  G     TIP ELAYGE G+  +IPP +TL F+VELL
Sbjct: 160 EALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
              GN  +K G Y  A + YEKA++           +   A A       N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALEL----------DPDNADAY-----YNLAAAYYKLG 48

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
            Y++A +   K L+LD  N KA Y    AY ++   + A    +KALE+DP+
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 165 KWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEK 220
             E  K  D V V+Y  +LEDG V      +    EFT+  G   P   + +  MK GEK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             L + P+  +GE+G       G +PPNATL   +EL+
Sbjct: 61  RKLTIPPELAYGEEGL----AGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 44/114 (38%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQV 327
            +  K+LK GDG   P +G  V V   G L DGTVF     +G     Q  EF      V
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRG-----QPAEFPLG--GV 153

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
           I G D  +  MK      LTI PE A+G    +    V+PPNST+ +EVEL+  
Sbjct: 154 IPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E GD V +HYT  + DG   D++ +   P  F +G G +I G +  +   + GE     I
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEI 63

Query: 114 PPELAYGE 121
           PPE A+GE
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 27/80 (33%), Positives = 38/80 (47%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
                KL DY +A +   K L+LD  N  A Y  A AY ++   + A  D +KALE+DPD
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66

Query: 515 NRDVKLEYKTLKEKMKEYNK 534
           N            K+ +Y +
Sbjct: 67  NAKAYYNLGLAYYKLGKYEE 86

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM-ADLD 499
             A+ALK     N      KL DY +A +   K L+LD  N +A Y  A AY+++  D +
Sbjct: 1   DNAEALK-----NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE 55

Query: 500 LAEFDIKKALEIDP 513
            A  D++KALE+DP
Sbjct: 56  EALEDLEKALELDP 69

Length = 69

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 153 GGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHFCPTLAK 210
            G+  K+LK G+    PK  D V V+Y   L DG V       G       G   P   +
Sbjct: 101 SGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGGVIPGWDE 159

Query: 211 AVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            ++ MK G K  L + P+  +GE+G       G +PPN+TL   +EL+ 
Sbjct: 160 GLQGMKVGGKRKLTIPPELAYGERGVP-----GVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
           TPE GD V   Y    LDG    S  +   P  + + Q ++  G   G+K MK+GE A F
Sbjct: 85  TPEFGDLVTFEYDIRALDGDVIYSEEELG-PQTYKVDQQDLFSGLRDGLKLMKEGETATF 143

Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             P   AYG  G    I PN  +   V LL+
Sbjct: 144 LFPSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           EQ   ++          RY++A+K  +   ++     +    L        AAC   LK+
Sbjct: 15  EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL--------AACCQMLKE 66

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y++A         LD  + +  +  A+  + + + + A   +  A+EI  +N     EY 
Sbjct: 67  YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP----EYS 122

Query: 524 TLKEK---MKEY 532
            LKE+   M E 
Sbjct: 123 ELKERAEAMLES 134

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 16/83 (19%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + A   K  GN LFK G Y  A + YEKA++           +   A+A       N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----------DPDNAEAY-----YNLAL 45

Query: 457 CKLKL-KDYKQAEKLCTKVLDLD 478
             LKL KDY++A +   K L+LD
Sbjct: 46  AYLKLGKDYEEALEDLEKALELD 68

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.5 bits (116), Expect = 2e-06
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E+ +E   +  E    L   G    A  RYE+A++ +E       +  K          L
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLE-------KALKLNPDDDAEALL 206

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N     LKL  Y++A +   K L+LD  N +ALY  A   +++   + A   ++KALE+D
Sbjct: 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266

Query: 513 PD-NRDVKLEYKTLKEKMKEYNK 534
           PD           L E ++   K
Sbjct: 267 PDLYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           ++ EE+ + A K KE+GN  ++   + +A K Y KA++       +              
Sbjct: 118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS------------- 164

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
              N AAC   L D+++  +  T  L+LD    KAL RRA AY  +     A  D+  A 
Sbjct: 165 ---NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL-TAS 220

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
            I    R+ +   + ++  +K++ + +AK
Sbjct: 221 CIIDGFRNEQSA-QAVERLLKKFAESKAK 248

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DG+  +S+R+   P  F LG G++ +G +  +  +K G+   F++
Sbjct: 6   QSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSL 65

Query: 114 PPELAYGESGSPPTI 128
            PE A+G   SP  I
Sbjct: 66  EPEAAFGVP-SPDLI 79

Length = 156

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            KALY    AY+++   D A    +KALE++P+N
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +ALY    AY+++ D D A    +KALE+DP+N
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           L+  DY +A       L       +AL    +A ++   L  A   ++ AL  DPD+
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L + G Y  A +  EKA++        G++  + A+AL      N A   L L DY 
Sbjct: 12  ALVLRRLGDYDEALELLEKALELAR---ELGEDHPETARAL-----NNLARLYLALGDYD 63

Query: 466 QAEKLCTKVLDLDSR 480
           +A +   K L L   
Sbjct: 64  EALEYLEKALALREA 78

Length = 78

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
           D V ++Y  ++EDG VV   D     + F V  G   P L +A+   + GE+  + + P+
Sbjct: 7   DVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66

Query: 229 YGFGE 233
             FGE
Sbjct: 67  DAFGE 71

Length = 174

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.5 bits (103), Expect = 7e-05
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 1/161 (0%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
            L+              E +E   +  E       AG     +    K  +  E      
Sbjct: 24  ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA-QAYIQM 495
              + +         LN       L  Y++A +L  K L LD     A    A  A  ++
Sbjct: 84  KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            D + A    +KALE+DP+  ++      L   ++   + E
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
              G ++E    L KA       +  E A+   +Y    G       KAL +     +AA
Sbjct: 544 LRTGNEEEAVAWLEKA--AELNPQEIEPALALAQYYLGKGQ----LKKALAILNEAADAA 597

Query: 457 CK------------LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                         L   D  +A     K+L L   +  AL   A AY  M +   A   
Sbjct: 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657

Query: 505 IKKALEIDPDNRDVKL 520
           +K+ALE+ PDN + ++
Sbjct: 658 LKRALELKPDNTEAQI 673

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.1 bits (102), Expect = 1e-04
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK  A     +    L   G        YE+A++  E       E  + A+AL     L 
Sbjct: 119 EKALALDPDPDLAEALLALGALYEL-GDYEEALELYEKALELDPELNELAEAL-----LA 172

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
             A    L  Y++A +L  K L L+   + +AL      Y+++   + A    +KALE+D
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232

Query: 513 PDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           PDN +       L  ++  Y +     
Sbjct: 233 PDNAEALYNLALLLLELGRYEEALEAL 259

Length = 291

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +A Y   Q Y+Q+ D + A+   +KALE+DP+N
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 32/230 (13%)

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV-------PPNSTVHYE 375
             ++    +D  +     N  ALL    +        +  LA         P N  V   
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232

Query: 376 VELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTL-----FKAGKYARASKRYEKAVK--- 427
           +  +  E  +        + +          + L     F+   Y  A +  + A+K   
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292

Query: 428 ------YIEYDTSFGDEEKKQA-----KALKVACNLNN-----AACKLKLKDYKQAEKLC 471
                  +   + +     +QA     + LK A N +      A+ +L+L    +A    
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           +  L LD  +  AL    +AY+ + D + A   + KA E+DP+N   + +
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +ALY    AY ++ D + A    +KALE+DP+N
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G VV +    K++DG V       E      F     Q+I GL+ A++  +  E   +
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTD--ENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV 61

Query: 347 TIAPEYAFG 355
            I PE AFG
Sbjct: 62  EIPPEDAFG 70

Length = 174

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 452 LNN-AACKLKLKDYKQAEKLCTKVLDL-------DSRNVKALYRRAQAYIQMADLDLAEF 503
           LNN A    +L DY +A +L  K L+L            +AL   A+ Y+ + D D A  
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67

Query: 504 DIKKALEIDPD 514
            ++KAL +   
Sbjct: 68  YLEKALALREA 78

Length = 78

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKA 211
           G++ K+ KEG   E PKD D V+VNY+  L DG     +   G   + +     P   + 
Sbjct: 147 GLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEG 205

Query: 212 VKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +K +KKG K+ L + P+  +G+ G         +P N+TL   +EL+  K
Sbjct: 206 LKNIKKGGKIKLVIPPELAYGKAGVP------GIPANSTLVFDVELLDVK 249

Length = 269

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  ++L +GE    P   D V V+Y  +L DG V    V + +  EF V      P 
Sbjct: 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPG 157

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             +A+  M  G K  L +  +  +GE+G  AS     +PP +TL   +EL+
Sbjct: 158 WIEALTLMPVGSKWELTIPHELAYGERGAGAS-----IPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++L +G+G   P     V+V   GKL DGTVF   V +G     +  EF  +   VI G 
Sbjct: 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARG-----EPAEFPVN--GVIPGW 158

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             A+  M       LTI  E A+G   +    A +PP ST+ +EVEL+
Sbjct: 159 IEALTLMPVGSKWELTIPHELAYGERGAG---ASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
           +AL      Y ++ D D A    +KALE+DPDN D          K+ +Y +
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEE 52

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L + GKY +A +++E+A++   Y           A++L      N   C LK  D+ 
Sbjct: 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQ--------PARSL-----ENAGLCALKAGDFD 152

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +AEK  T+ L +D +  ++L   A+ Y 
Sbjct: 153 KAEKYLTRALQIDPQRPESLLELAELYY 180

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
             AL   A+A + + DLD A   +++AL +DPD+ +  L  
Sbjct: 1   PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLL 41

Length = 44

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G YA A K   KA+                    K       A   L    ++
Sbjct: 63  GKIYLALGDYAAAEKELRKAL---------------SLGYPKNQVLPLLARAYLLQGKFQ 107

Query: 466 QAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
           Q          LD      L   R  AY+ +  L+LA+   ++AL IDP +   KL
Sbjct: 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL 163

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 24/77 (31%), Positives = 35/77 (45%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           DY QA+K   K L+ D     A   RA  Y ++ + DLA+   +KAL + P+N DV   Y
Sbjct: 50  DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109

Query: 523 KTLKEKMKEYNKKEAKF 539
                      +   +F
Sbjct: 110 GAFLCAQGRPEEAMQQF 126

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	562
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.92
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.88
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.88
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.87
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.85
KOG0553	304	consensus TPR repeat-containing protein [General f	99.84
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.83
KOG4234	271	consensus TPR repeat-containing protein [General f	99.82
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.8
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.77
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.75
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.75
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.73
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.71
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.66
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.65
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.57
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.54
PRK15359	144	type III secretion system chaperone protein SscB;	99.5
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.49
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.44
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.44
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.36
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.35
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.35
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.32
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.27
PRK11189	296	lipoprotein NlpI; Provisional	99.23
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.19
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.13
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
KOG1126	638	consensus DNA-binding cell division cycle control	99.1
KOG4555	175	consensus TPR repeat-containing protein [Function	99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.04
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.01
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.01
PRK15331	165	chaperone protein SicA; Provisional	99.01
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.0
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.0
PRK15359	144	type III secretion system chaperone protein SscB;	99.0
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.95
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.94
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.92
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.92
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
PRK12370	553	invasion protein regulator; Provisional	98.91
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.9
PRK12370	553	invasion protein regulator; Provisional	98.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.87
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.87
KOG0553	304	consensus TPR repeat-containing protein [General f	98.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.85
KOG1126	638	consensus DNA-binding cell division cycle control	98.85
PRK11189	296	lipoprotein NlpI; Provisional	98.85
PF13371	73	TPR_9: Tetratricopeptide repeat	98.84
PRK01490	435	tig trigger factor; Provisional	98.83
KOG1125	579	consensus TPR repeat-containing protein [General f	98.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.8
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.8
PRK10803	263	tol-pal system protein YbgF; Provisional	98.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.74
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.73
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.71
PLN02789	320	farnesyltranstransferase	98.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.68
PF13512	142	TPR_18: Tetratricopeptide repeat	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.66
KOG2076	895	consensus RNA polymerase III transcription factor	98.64
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.63
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.62
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.61
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.61
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.61
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.59
KOG2003	840	consensus TPR repeat-containing protein [General f	98.58
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.57
PLN02789	320	farnesyltranstransferase	98.56
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.54
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.52
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.51
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.48
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.47
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.47
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.46
KOG1310	758	consensus WD40 repeat protein [General function pr	98.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.43
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.4
PRK14574	822	hmsH outer membrane protein; Provisional	98.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.38
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
PF13371	73	TPR_9: Tetratricopeptide repeat	98.34
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.33
KOG1129	478	consensus TPR repeat-containing protein [General f	98.33
KOG1125	579	consensus TPR repeat-containing protein [General f	98.29
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.27
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.24
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.23
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.23
PF12688	120	TPR_5: Tetratrico peptide repeat	98.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.21
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.19
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.16
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.15
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.13
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.12
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.11
KOG2076	895	consensus RNA polymerase III transcription factor	98.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.1
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.08
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.07
PRK14574	822	hmsH outer membrane protein; Provisional	98.06
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	98.05
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.04
PRK10803	263	tol-pal system protein YbgF; Provisional	98.03
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.02
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.01
PRK01490	435	tig trigger factor; Provisional	98.01
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.98
KOG1129	478	consensus TPR repeat-containing protein [General f	97.98
PF13431	34	TPR_17: Tetratricopeptide repeat	97.97
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.96
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.95
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.94
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.93
PF13428	44	TPR_14: Tetratricopeptide repeat	97.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.9
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.89
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.88
PF12688	120	TPR_5: Tetratrico peptide repeat	97.88
PRK11906	458	transcriptional regulator; Provisional	97.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.86
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.86
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.85
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.81
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.8
KOG4234	271	consensus TPR repeat-containing protein [General f	97.79
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.78
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.78
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.68
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.68
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.67
PF13428	44	TPR_14: Tetratricopeptide repeat	97.66
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.65
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.63
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.62
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.62
PRK15331	165	chaperone protein SicA; Provisional	97.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.61
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.54
PRK10941	269	hypothetical protein; Provisional	97.53
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.52
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.5
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.48
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.48
PF13512	142	TPR_18: Tetratricopeptide repeat	97.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.46
KOG1586	288	consensus Protein required for fusion of vesicles	97.45
KOG4555	175	consensus TPR repeat-containing protein [Function	97.44
PRK11906	458	transcriptional regulator; Provisional	97.43
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.43
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.43
KOG2003	840	consensus TPR repeat-containing protein [General f	97.39
KOG3364	149	consensus Membrane protein involved in organellar	97.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.33
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.3
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.29
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.28
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.24
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.2
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.13
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.12
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.07
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.98
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.92
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.91
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.87
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.79
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.74
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.72
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.72
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.67
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.67
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.6
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.57
PF13431	34	TPR_17: Tetratricopeptide repeat	96.48
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.45
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.33
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.3
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.23
KOG1586	288	consensus Protein required for fusion of vesicles	96.22
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.2
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.11
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.1
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.08
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.03
KOG2471	696	consensus TPR repeat-containing protein [General f	95.98
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.96
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.92
PRK04841	903	transcriptional regulator MalT; Provisional	95.92
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.88
COG2912	269	Uncharacterized conserved protein [Function unknow	95.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.8
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.79
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.74
KOG1585	308	consensus Protein required for fusion of vesicles	95.72
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.68
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.61
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.57
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.49
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.35
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	95.31
COG3947	361	Response regulator containing CheY-like receiver a	95.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.26
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.24
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.09
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.07
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.06
PRK04841	903	transcriptional regulator MalT; Provisional	95.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.98
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.89
PLN03218	1060	maturation of RBCL 1; Provisional	94.82
KOG3364	149	consensus Membrane protein involved in organellar	94.79
PLN03218	1060	maturation of RBCL 1; Provisional	94.77
PLN03077	857	Protein ECB2; Provisional	94.69
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.67
KOG1585	308	consensus Protein required for fusion of vesicles	94.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.46
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.35
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.22
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.97
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.88
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.66
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.65
PRK10941	269	hypothetical protein; Provisional	93.63
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.62
PLN03077	857	Protein ECB2; Provisional	93.51
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.51
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.5
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.31
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.22
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.11
KOG2471	696	consensus TPR repeat-containing protein [General f	93.11
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.89
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.72
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.33
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.26
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	92.16
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.08
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.03
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.89
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.83
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.45
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.43
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.01
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.76
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.65
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.48
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.36
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.53
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	89.49
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	89.45
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.33
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.18
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	88.12
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.09
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.08
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.0
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.93
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.91
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.41
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	87.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.12
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.63
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.49
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.37
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	86.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	86.19
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	86.1
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.06
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	86.0
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.98
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	85.65
COG2912	269	Uncharacterized conserved protein [Function unknow	85.57
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.1
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.7
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.13
cd02656	75	MIT MIT: domain contained within Microtubule Inter	84.12
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	83.82
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.21
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	83.13
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	83.11
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.09
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.05
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.04
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.91
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.82
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.7
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.6
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	82.34
KOG2422	665	consensus Uncharacterized conserved protein [Funct	82.29
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.12
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.47
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.4
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.2
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	81.02
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	80.79
KOG1310	758	consensus WD40 repeat protein [General function pr	80.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.37
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	80.05

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-65  Score=494.96  Aligned_cols=354  Identities=51%  Similarity=0.820  Sum_probs=333.5

Q ss_pred             ecCccccCCCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCC
Q 008540          161 KEGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKS  237 (562)
Q Consensus       161 ~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~  237 (562)
                      ++|+|+..|..|+.|.+||++++.+|+.|++|   +|+.|.+|.|+++.||..++.+|+.              |+.+.|
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p   66 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP   66 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence            36889999999999999999999999999998   5999999999999999999999998              555555


Q ss_pred             CCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCCC-CCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcc
Q 008540          238 ASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ  316 (562)
Q Consensus       238 ~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~g-~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~  316 (562)
                           +.||++++|.|+|+|.          |++|+|+|+++|.| ..+|..|..|+|||.|.+.|+ +|+++..     
T Consensus        67 -----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-----  125 (397)
T KOG0543|consen   67 -----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-----  125 (397)
T ss_pred             -----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----
Confidence                 6799999999999998          89999999999999 789999999999999999888 7776543     


Q ss_pred             cEEEEcCC-cchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee-eccccccCChHH
Q 008540          317 LFEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEE  394 (562)
Q Consensus       317 ~~~~~lg~-~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~-~~~~~~~~~~~e  394 (562)
                      .|+|.+|+ ..+|.||++||++|++||++.|+|+|+|+||+.+..  .+.|||++++.|+|+|++|. +....|.|..++
T Consensus       126 ~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e  203 (397)
T KOG0543|consen  126 RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEE  203 (397)
T ss_pred             ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHH
Confidence            38888999 689999999999999999999999999999955433  47899999999999999999 889999999999


Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ++..|...++.||.+|+.|+|..|...|++|+..+......++++......++..||+|+|.||+|+++|.+|+.+|++|
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPK  551 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  551 (562)
                      |+++|+|+||+||+|+||+.+++|+.|+.+|++|++++|+|++++.+|..|+++.++++.+++++|++||+++....
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~  360 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEES  360 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-37  Score=299.28  Aligned_cols=349  Identities=36%  Similarity=0.545  Sum_probs=271.3

Q ss_pred             EcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCC
Q 008540           45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS  124 (562)
Q Consensus        45 ~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~  124 (562)
                      ++|.|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.|.+|.||..++..|+.              |+.+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~   65 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS   65 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence            4799999999999999999999999999999998 79999999999999999999999988              77888


Q ss_pred             CCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCcc-ccCCCCCCeEEEEEEEEeCCCeEeecc-cceEEEecC-
Q 008540          125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD-  201 (562)
Q Consensus       125 ~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~-  201 (562)
                      ++.+|++.++.|+|+|+          |+.++++|+++|.| ...|+.|..|.+||.+.+.++ +|+++ ..+.|.+|. 
T Consensus        66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~  134 (397)
T KOG0543|consen   66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED  134 (397)
T ss_pred             CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence            89999999999999997          89999999999999 999999999999999999888 66665 567888888 


Q ss_pred             CCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCC
Q 008540          202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD  281 (562)
Q Consensus       202 ~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~  281 (562)
                      ..++.||+.+|..|++||++.|+|+|+++||+.+..    .+.||||++|.|+|+|++|....+-+              
T Consensus       135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s--------------  196 (397)
T KOG0543|consen  135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES--------------  196 (397)
T ss_pred             cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence            479999999999999999999999999999954432    37899999999999999997422211              


Q ss_pred             CCCCCCCCCEEEEEEEE-EecCCcEEEecCCCCCcccEEEEcCCcc-hhhHHHHHHhccCCCcEEEEEEcCCCccCCccc
Q 008540          282 GFERPNEGAVVKVKLIG-KLQDGTVFVKKGHSEEEQLFEFKTDEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (562)
Q Consensus       282 g~~~p~~~~~v~v~~~~-~~~~g~~~~~~~~~~~~~~~~~~lg~~~-v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~  359 (562)
                          -..++..++.... ..+.|+.+             |.-|+.. -..-.++|+..          +..+..+.    
T Consensus       197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~----------l~~~~~~~----  245 (397)
T KOG0543|consen  197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSF----------LEYRRSFD----  245 (397)
T ss_pred             ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHH----------hhccccCC----
Confidence                0001110111110 01123222             2223321 12223333322          21111110    


Q ss_pred             cccccCCCCCccEEEEEEEeeeeeccccccCChHH--HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh
Q 008540          360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEE--KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD  437 (562)
Q Consensus       360 ~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~  437 (562)
                                                    .....  .--....+.+.+.++.+.++|..|+...+++|.+.+.+...  
T Consensus       246 ------------------------------~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA--  293 (397)
T KOG0543|consen  246 ------------------------------EEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA--  293 (397)
T ss_pred             ------------------------------HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH--
Confidence                                          01111  11223567889999999999999999999999998876544  


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 008540          438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDP  513 (562)
Q Consensus       438 ~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~p  513 (562)
                                   ++.+|.+++.+++|+.|+.++++|++++|+|-.+...+..|..+..++.+. .+.|.+.+..-+
T Consensus       294 -------------LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  294 -------------LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             -------------HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                         889999999999999999999999999999988888888888888877655 677777776533

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-36  Score=271.57  Aligned_cols=277  Identities=26%  Similarity=0.378  Sum_probs=239.9

Q ss_pred             CCcceEEEEEecCCCC-CCCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEE
Q 008540          268 DDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~-~~p~~~~~v~v~~~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~  344 (562)
                      ...+|.|+||.+|.|. +.-..|++|++||.+...+  ++++|+++.  .+.|+++++|.....+.||.+|++|.++|++
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            3567899999999985 3456799999999998764  478998875  7999999999999999999999999999999


Q ss_pred             EEEEcCC----CccCCccccc---------------ccc---------------CCCCCccEEEEEEEeeeee----ccc
Q 008540          345 LLTIAPE----YAFGSAESQQ---------------ELA---------------VVPPNSTVHYEVELVSFEK----EKE  386 (562)
Q Consensus       345 ~v~i~~~----~~yg~~~~~~---------------~~~---------------~ip~~~~l~f~ieL~~~~~----~~~  386 (562)
                      .|+|+..    |.|-++....               ...               .....++|.|.++|+.+..    ..+
T Consensus        86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e  165 (329)
T KOG0545|consen   86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE  165 (329)
T ss_pred             HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence            9988743    3333321110               000               0012368999999998863    468


Q ss_pred             cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (562)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (562)
                      .|+|+.++|+..+..++++||.+|+.|+|.+|...|..|+-.+.+..   ...+.+|.++......+++|+++|+++.++
T Consensus       166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e  245 (329)
T KOG0545|consen  166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE  245 (329)
T ss_pred             cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence            89999999999999999999999999999999999999998877532   345689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008540          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEKMKEYNKKEAKFYGN  542 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~  542 (562)
                      |.+++++|+.+|..+|.|+||||+||+|+....+..+|.++|.++|+++|.- +.+.++|+.+..++.+.+..++..|++
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k  325 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK  325 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 478899999999999999999999999


Q ss_pred             hccc
Q 008540          543 MFAK  546 (562)
Q Consensus       543 ~f~~  546 (562)
                      ||+.
T Consensus       326 mfs~  329 (329)
T KOG0545|consen  326 MFSQ  329 (329)
T ss_pred             hcCC
Confidence            9973

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.8e-29  Score=215.90  Aligned_cols=169  Identities=32%  Similarity=0.472  Sum_probs=139.7

Q ss_pred             EEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeecc---ccccCcceeEeeee
Q 008540           85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVK---DICKDGGIIKKILK  161 (562)
Q Consensus        85 ~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~---~~~~d~~~~k~i~~  161 (562)
                      |.+|.+.+|+|.+.++.||..|+++++++||+++||..+..    .-..+++.+.++......   .......+...+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~   76 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK   76 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence            45788999999999999999999999999999999965542    112456666665544322   22334444444443


Q ss_pred             c-CccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008540          162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK  236 (562)
Q Consensus       162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~  236 (562)
                      . ......+..||.+++||++.+.||++||+|    +|+.|++|.+++++||+.+|.+|++||+|++.|||++|||+.|.
T Consensus        77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~  156 (188)
T KOG0549|consen   77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA  156 (188)
T ss_pred             CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence            3 335677889999999999999999999998    79999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCeEEEEEEeecccc
Q 008540          237 SASGNEGAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       237 ~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (562)
                      +     +.||++++|+|+|+|+....
T Consensus       157 ~-----~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  157 P-----PKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             C-----CCCCCCeeEEEEEEEEEeec
Confidence            6     56999999999999999764

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-28  Score=210.87  Aligned_cols=176  Identities=28%  Similarity=0.467  Sum_probs=144.8

Q ss_pred             EEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccc---eeecCCcceE
Q 008540          197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTV---SEITDDKKVI  273 (562)
Q Consensus       197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~---~~~~~d~~v~  273 (562)
                      +++|.+.++++.+.++.+|+.|++++|++||+++||..+.         .....+++.+.+..+...   +....+..+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~   71 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---------GDLNILVITILLVLLFRASAAEKWNPDEELQ   71 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---------ccccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence            4678899999999999999999999999999999995544         223345666666554321   2222334444


Q ss_pred             EEEEecC-CCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCCC
Q 008540          274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY  352 (562)
Q Consensus       274 k~il~~G-~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~~~  352 (562)
                      -.++..- .+..+...||.+++||++.++||++||+++.  +++|++|+||.++||+|||++|..||+||+..++|||++
T Consensus        72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L  149 (188)
T KOG0549|consen   72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL  149 (188)
T ss_pred             EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence            4454442 2667888999999999999999999999874  889999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCccEEEEEEEeeeeeccc
Q 008540          353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE  386 (562)
Q Consensus       353 ~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~  386 (562)
                      +||+.+..+   .||++++|+|+|+|..+.....
T Consensus       150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence            999998764   5999999999999999886543

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.6e-27  Score=178.46  Aligned_cols=106  Identities=58%  Similarity=1.029  Sum_probs=103.3

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCC
Q 008540           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (562)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~  117 (562)
                      |+.++++.+|+|...|+.||.|++||++.+.||+.|||+.+++.|+.|.+|.|.+|.||++++..|.+||+++++|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            68899999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       118 ~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      |||..+.+..||||++|+|+|||+++
T Consensus        82 aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCCCccCCCcEEEEEEEEEec
Confidence            99999999999999999999999976

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.1e-27  Score=206.90  Aligned_cols=108  Identities=57%  Similarity=0.977  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      .++++|++|++++.|+| ..|..++.|.|||++++.||++|||++++++|+.|.||  ++|+||.+||.+|++|++++++
T Consensus        97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~  173 (205)
T COG0545          97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT  173 (205)
T ss_pred             eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence            45999999999999999 89999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      |||++|||..+.++.||||++|+|+|+|+++
T Consensus       174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999999988789999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.9e-24  Score=164.25  Aligned_cols=105  Identities=38%  Similarity=0.655  Sum_probs=98.8

Q ss_pred             eEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCC
Q 008540          272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE  351 (562)
Q Consensus       272 v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~~  351 (562)
                      +-+.+|.+|+|...|..|++|++||++.+.||+.||++.  +++.||.|.+|.+++|.||+.++..|.+||++.++|+|+
T Consensus         3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd   80 (108)
T KOG0544|consen    3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPD   80 (108)
T ss_pred             ceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeeccc
Confidence            667899999999999999999999999999999999876  589999999999999999999999999999999999999


Q ss_pred             CccCCccccccccCCCCCccEEEEEEEeee
Q 008540          352 YAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (562)
Q Consensus       352 ~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (562)
                      |+||..+.+   ..||||++|.|+|||+.+
T Consensus        81 ~aYG~~G~p---~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   81 YAYGPRGHP---GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             cccCCCCCC---CccCCCcEEEEEEEEEec
Confidence            999998844   589999999999999875

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.88  E-value=2.4e-22  Score=186.17  Aligned_cols=108  Identities=46%  Similarity=0.776  Sum_probs=103.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  +++|||+++|.+|++|++++|+
T Consensus        98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~  174 (206)
T PRK11570         98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT  174 (206)
T ss_pred             EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence            45999999999999999 78999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      |||++|||..+.++.|||+++|+|+|+|++|
T Consensus       175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        175 IPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999999988899999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.8e-22  Score=182.47  Aligned_cols=108  Identities=49%  Similarity=0.872  Sum_probs=103.2

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEE-EEcCCCccchhHHHHHcccccccEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~-~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      .+.++||.|+.++.|.| +.+..|+.|.|||.+++. +|++||++... .|+. |.+|.+.+|+||+.++.||++|++|+
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            46899999999999999 899999999999999998 99999999974 8999 99999999999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      |+|||++|||..+.+ .||+|++|+|+|||+.+
T Consensus       194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            999999999999987 89999999999999876

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.87  E-value=2e-21  Score=175.65  Aligned_cols=110  Identities=35%  Similarity=0.511  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540           33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      ..+++|++|.++.+  |+| ..|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++|++++
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            55899999999976  666 67899999999999999999999999874 699999999999999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |.|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888999999999999999885

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5.3e-21  Score=170.27  Aligned_cols=103  Identities=34%  Similarity=0.585  Sum_probs=96.3

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      +..+++.+.++..|.| ..|..++.|++||++++.+|++||+|    +|+.|.+|  ++|+||.+||.+|++|++++++|
T Consensus        98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I  174 (205)
T COG0545          98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI  174 (205)
T ss_pred             ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence            4578899999999998 88999999999999999999999997    78999988  99999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      ||++|||+.|.+     +.||||++|+|+|+|+++
T Consensus       175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence            999999999975     559999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=9e-21  Score=178.50  Aligned_cols=125  Identities=33%  Similarity=0.441  Sum_probs=120.0

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (562)
                      +-...|+.+|.+||.+++.++|++|+..|++||.+.|.++.+               |+|+|++|.++|+|+.|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence            677889999999999999999999999999999999998877               99999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      +|.+||.+.|+|.|+|.+|+.+|+|++|++.|++||+++|+|...+..|+.+++++++..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999988877654

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.83  E-value=9.1e-20  Score=175.14  Aligned_cols=110  Identities=49%  Similarity=0.876  Sum_probs=103.1

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  .++|||+++|.+|++|++++|+
T Consensus       142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            45899999999999999 78999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~  146 (562)
                      ||++++||..+.+ .||++++|+|+|+|+++.+.
T Consensus       219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             ECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence            9999999999865 79999999999999999753

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.5e-19  Score=159.35  Aligned_cols=133  Identities=35%  Similarity=0.490  Sum_probs=123.3

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      .+..+..++..||.+|+.|+|..|...|..||.++|....          ..+..||.|+|+|++|++.|+.||..|.++
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            3678899999999999999999999999999999987553          467788999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                      |+++|.+.+|+.|||.+|.++..|++|+++|++.++++|.+.+++..+.+|...+...+++-+
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888887776544

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.80  E-value=5.5e-19  Score=144.71  Aligned_cols=93  Identities=56%  Similarity=0.979  Sum_probs=87.0

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCC-CCC
Q 008540           49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT  127 (562)
Q Consensus        49 G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~-~~~  127 (562)
                      |.++|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||+++||..+. +..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            4467999999999999999999999999777799999999999999999999999999999999999999999987 457


Q ss_pred             CCCCCcEEEEEEEe
Q 008540          128 IPPNATLQFDVELL  141 (562)
Q Consensus       128 ip~~~~l~~~vel~  141 (562)
                      ||++++++|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.77  E-value=1.5e-18  Score=154.03  Aligned_cols=132  Identities=23%  Similarity=0.346  Sum_probs=98.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      .++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.||++|++++|.|||++|||+++        
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d--------   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS--------   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            578999999999999999999999987679999999999999999999999999999999999999999877        


Q ss_pred             CcEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      ..++..+....|...... ..+.........|.   +...-..++.|+++|||++++.++.+.-
T Consensus        76 ~~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v  138 (156)
T PRK15095         76 PDLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI  138 (156)
T ss_pred             hHHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEE
Confidence            445555544444321111 11111111111111   1122334589999999999999987764

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=7e-18  Score=154.55  Aligned_cols=105  Identities=30%  Similarity=0.473  Sum_probs=97.8

Q ss_pred             cccCcceeEeeeecCccccCCCCCCeEEEEEEEEeC-CCeEeecc---cceE-EEecCCCCcchHHHHHhhccCCcEEEE
Q 008540          149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL  223 (562)
Q Consensus       149 ~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~v  223 (562)
                      .+..+++.+..+..|.| ..+..|++|.++|.+++. .|++|+++   .|.. |.+|.+++|+||+.++.+|++|.+|+|
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence            45678889999999998 999999999999999999 89999987   7888 999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      +|||++|||..+.+      .||||++|+|+|+|+..
T Consensus       195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence            99999999999884      89999999999999864

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.6e-18  Score=150.64  Aligned_cols=136  Identities=26%  Similarity=0.366  Sum_probs=100.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      ++++|+.|+|+|++++.||++||+|.....|+.|.+|.|+++|||++||.||.+|++.+|.|||+.|||+++        
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~--------   73 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD--------   73 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC--------
Confidence            478999999999999999999999987568999999999999999999999999999999999999999987        


Q ss_pred             CcEEEEEEEeEeeeccccccCcceeEeeeecC----ccccCCCCCCeEEEEEEEEeCCCeEeecccceEEE
Q 008540          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT  198 (562)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g----~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~  198 (562)
                      ..++-.+..-.|....+.. .+..+  ....+    .+..+...++.|+++|||++++.++.++-+-..+.
T Consensus        74 ~~lvq~vp~~~F~~~~~~~-vGm~~--~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~  141 (174)
T COG1047          74 PDLVQRVPRDEFQGVGELE-VGMEV--EAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR  141 (174)
T ss_pred             hHHeEEecHHHhCcCCCCC-CCcEE--EEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence            3444444443343321110 01000  00000    12233345589999999999999998876444443

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.73  E-value=2.8e-17  Score=148.66  Aligned_cols=105  Identities=23%  Similarity=0.339  Sum_probs=93.2

Q ss_pred             cCcceeEeeeec--CccccCCCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          151 KDGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       151 ~d~~~~k~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      ...++.+.++..  |+| ..|..||.|++||.+++.+|++|+++   .|..|.+|.+++++||+++|.+|++||++++.|
T Consensus        67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i  145 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF  145 (177)
T ss_pred             CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence            345666666654  555 67899999999999999999999987   589999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      ||++|||..|.+     ..||||++|+|+|+|+++.
T Consensus       146 P~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       146 PSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence            999999998875     6799999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.71  E-value=5.2e-17  Score=147.57  Aligned_cols=124  Identities=20%  Similarity=0.267  Sum_probs=96.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      +++++++|+|+|++++.||++|++|+. ..|+.|.+|.++++|+|++||.||++|++++|.|||+.|||+++        
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d--------   72 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------   72 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            467899999999999999999999986 48999999999999999999999999999999999999999987        


Q ss_pred             CcEEEEEEEeEeeecccc---------ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       132 ~~l~~~vel~~~~~~~~~---------~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      ..++..|..-.|......         ..++.+..++++        ..++.|+|+|||+|++.++.|+-
T Consensus        73 ~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~e--------v~~d~V~vD~NHPLAG~~L~F~v  134 (196)
T PRK10737         73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFNV  134 (196)
T ss_pred             hHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEE--------EcCCEEEEECCCcCCCCEEEEEE
Confidence            344444444333221111         112222223333        34489999999999999987764

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.71  E-value=8.1e-17  Score=149.37  Aligned_cols=103  Identities=30%  Similarity=0.536  Sum_probs=94.6

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      ..+.++.+++++.|.| ..|..+|.|++||.+++.+|++|+++    +|..|.++  ++++||+++|.+|++|+++.|+|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            3567889999999999 67999999999999999999999986    68899986  69999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      ||++|||+.|.+     +.|||+++|+|+|+|+++
T Consensus       176 P~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAG-----ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence            999999998874     679999999999999875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.2e-15  Score=151.43  Aligned_cols=131  Identities=31%  Similarity=0.415  Sum_probs=112.1

Q ss_pred             ccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHH
Q 008540          388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (562)
Q Consensus       388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (562)
                      -.+..+++...|..++.+||.+|++|+|++||++|++||.++|+.+.+               |.|+|+||..+|+|++.
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V  168 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV  168 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence            346788999999999999999999999999999999999999987766               99999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Q 008540          468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      +++|.++|+++|+++|||+|||.||..+|++++|+.+..-..-++ =+|..+...+.++.+++.+..
T Consensus       169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~k  235 (606)
T KOG0547|consen  169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKK  235 (606)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987543332 234455555555555554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=5.6e-16  Score=156.01  Aligned_cols=117  Identities=36%  Similarity=0.499  Sum_probs=111.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+...++.||.+|+.|+|..|+.+|++||...|.+...               |+|+|+||.+++++..|+.+|++++++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l---------------YsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL---------------YSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            36778899999999999999999999999999887755               999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      +|+++++|+|.|.|+..+.+|++|++.|++++++||++.++...+++|...+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999997754

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.65  E-value=1.4e-15  Score=124.41  Aligned_cols=94  Identities=39%  Similarity=0.668  Sum_probs=85.3

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccc
Q 008540          282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ  361 (562)
Q Consensus       282 g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~  361 (562)
                      |..+|..|+.|+|||.+++.+|++|+++..  ...|++|.+|.+.+++||+.+|..|+.||++.|.+++.++||+.+...
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            455799999999999999999999998753  688999999999999999999999999999999999999999987643


Q ss_pred             cccCCCCCccEEEEEEEe
Q 008540          362 ELAVVPPNSTVHYEVELV  379 (562)
Q Consensus       362 ~~~~ip~~~~l~f~ieL~  379 (562)
                        ..||++++|.|+|+|+
T Consensus        79 --~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 --PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             --TTBTTTSEEEEEEEEE
T ss_pred             --CCcCCCCeEEEEEEEC
Confidence              3599999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.65  E-value=5.1e-16  Score=147.54  Aligned_cols=121  Identities=31%  Similarity=0.452  Sum_probs=114.2

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH
Q 008540          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (562)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (562)
                      .++.+..+..++++||.||++|.|++|+.+|.+++...|.++..               +.|+|.+|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence            45667888889999999999999999999999999999988876               889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      +.|+.+|...+|||-||+.|...||...+|.++++.+|+|+|++.+.++.++.+..
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999988888765

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.59  E-value=9.3e-15  Score=140.65  Aligned_cols=104  Identities=34%  Similarity=0.602  Sum_probs=93.4

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      ..+.++.++++..|+| ..|..+|.|.|||.+++.+|++|+++    .|..|.+  ++++|||+++|.+|++|+++.|+|
T Consensus       143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence            3567899999999999 68999999999999999999999986    4666666  479999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (562)
                      |++++||+.|.      +.||||++|+|+|+|+++..
T Consensus       220 P~~laYG~~g~------~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        220 PPELAYGKAGV------PGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             CchhhCCCCCC------CCCCCCCcEEEEEEEEEecc
Confidence            99999999876      36999999999999999864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.2e-14  Score=141.86  Aligned_cols=128  Identities=25%  Similarity=0.376  Sum_probs=116.1

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ..+....++++||..|++|+|..|...|+.||.+.|.+...           .+.||.|+|.+..++|+..+|+.+|+.|
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            45667889999999999999999999999999999875533           6788999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      +.+|+..+|||.++|.||+.+++|++|.++|++|++++.+ .++++.++.++..+++.++
T Consensus       314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999877 7788888888777775543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2e-14  Score=136.62  Aligned_cols=109  Identities=29%  Similarity=0.419  Sum_probs=98.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.|..+++.||.||+.++|..|+.+|+++|..-..+++           +.+.+|+|+|+|++.+|+|..|+.+|.+|+.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37999999999999999999999999999997666554           4778899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ++|++.||++|-|+|++.|.++.+|..+++..+.++-+++
T Consensus       148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999999999999999999999999998887776654443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.54  E-value=6.9e-14  Score=142.84  Aligned_cols=118  Identities=19%  Similarity=0.307  Sum_probs=110.2

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..++.+|+.+|..++|..|+..|++|+++.|.+..               +|+++|.||+++|+|++|+.+|++++.++|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------------LYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            45788999999999999999999999999886543               389999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      ++..+|+++|.+|+.+|+|++|+..|+++++++|++..+...+..|..++...
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999998888654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.50  E-value=2.7e-13  Score=120.07  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +...|..+++.|+|++|+..|.+++.+.|.+...               ++++|.++.++|+|++|+..|++++.++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA---------------HIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            5568999999999999999999999998876544               8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +.+++++|.||..+|++++|+..|++|++++|++.......+.+...+.
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988888777665544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=1.3e-13  Score=139.03  Aligned_cols=113  Identities=26%  Similarity=0.339  Sum_probs=107.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..++++||..|..|+|+.|+.+|..||.+.|.+...               |.|++.||.++++|++|+.+..+..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl---------------ySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL---------------YSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccch---------------hcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4568899999999999999999999999999986554               9999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      |+++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|....
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999988888776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=5.8e-13  Score=147.05  Aligned_cols=134  Identities=31%  Similarity=0.384  Sum_probs=115.9

Q ss_pred             CCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Q 008540          366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA  445 (562)
Q Consensus       366 ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~  445 (562)
                      +|+...+....++..+. ....|.++.+++...+..++++|+.+|+.|+|.+|+..|++|+.+.|. .            
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------  160 (615)
T TIGR00990        95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------  160 (615)
T ss_pred             CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence            44445555555554433 455789999999999999999999999999999999999999998773 2            


Q ss_pred             HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                         ..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence               13889999999999999999999999999999999999999999999999999999999988877654

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.6e-13  Score=118.46  Aligned_cols=122  Identities=25%  Similarity=0.364  Sum_probs=94.7

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~  244 (562)
                      ...++.|+++|+.++.+|++++++    .|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||+.          
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~----------   72 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY----------   72 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC----------
Confidence            467899999999999999999987    599999999999999999999999999999999999999954          


Q ss_pred             CCCCCeEEEEEEeeccccceeecCCcceEEEEEecC-----CCCCCCCCCCEEEEEEEEEecCCcEEE
Q 008540          245 VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-----DGFERPNEGAVVKVKLIGKLQDGTVFV  307 (562)
Q Consensus       245 ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G-----~g~~~p~~~~~v~v~~~~~~~~g~~~~  307 (562)
                         +..|+..+.+..|....    +..+-..+..++     .|...-..+.+|+|+|+..|++-++.+
T Consensus        73 ---~~~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~f  133 (174)
T COG1047          73 ---DPDLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHF  133 (174)
T ss_pred             ---ChHHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEE
Confidence               44577777777776521    122222222222     133344568889999999997666654

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.44  E-value=3.3e-13  Score=119.86  Aligned_cols=124  Identities=20%  Similarity=0.316  Sum_probs=87.2

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG  243 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~  243 (562)
                      .+..++.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+.         
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~---------   74 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP---------   74 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence            3567899999999999999999986    699999999999999999999999999999999999999954         


Q ss_pred             CCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCC---CCCCCCCCCEEEEEEEEEecCCcE
Q 008540          244 AVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD---GFERPNEGAVVKVKLIGKLQDGTV  305 (562)
Q Consensus       244 ~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~---g~~~p~~~~~v~v~~~~~~~~g~~  305 (562)
                          +..+++.+....|... ....-|..+.-.-..|.   +...-..+.+|+|+|++.|++-++
T Consensus        75 ----d~~~v~~vp~~~f~~~-~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L  134 (156)
T PRK15095         75 ----SPDLIQYFSRRDFMDA-GEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTV  134 (156)
T ss_pred             ----ChHHEEEecHHHCCcc-cCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEE
Confidence                3446666666666431 11112222111111121   111223456677777777765444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=8.1e-13  Score=120.34  Aligned_cols=117  Identities=32%  Similarity=0.413  Sum_probs=104.5

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+.++++.||.+|..+.|..|+..|.+||.+.|.....               |.|+|.||+++++|+.+..+|.++++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            468899999999999999999999999999999987766               88999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C--CCHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID---P--DNRDVKLEYKTLKEK  528 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---p--~~~~~~~~l~~l~~~  528 (562)
                      ++|+.+|++|.+|.+++....|++|+..+.+|+.+.   |  .-.++..+|..++.+
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            999999999999999999999999999999997662   1  123677777766443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=6.9e-12  Score=109.37  Aligned_cols=102  Identities=13%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      -+.+...|..++..|+++.|.+.|+-.+.+.|.+...               |+|||.|+..+|+|.+|+..|.+++.++
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L~   99 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4567789999999999999999999999999887665               8999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      |+++.++++.|.||+.+|+.+.|++.|+.|+..--.+
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999986443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.36  E-value=1.1e-11  Score=108.81  Aligned_cols=116  Identities=20%  Similarity=0.306  Sum_probs=103.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +......|..+++.|+++.|+..|++++...|.+...               +.++|.|+.+++++.+|+..+++++..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY---------------WLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4557789999999999999999999999987765433               8899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      |.++..++.+|.+|..+|++++|+..|+++++++|++.........+...+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987776666665443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.35  E-value=1.6e-12  Score=130.47  Aligned_cols=122  Identities=22%  Similarity=0.306  Sum_probs=115.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .++.+++++|.+|+.+.|+.|+..|.+||++.|++...               +.|+|++++|.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence            46778999999999999999999999999999988777               789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      +|...|+|+|+|.+++.++++.+|+.+|++...+.|+++.+++.+..|.....++..
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f  124 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF  124 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999888877553

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.35  E-value=2.9e-12  Score=116.68  Aligned_cols=123  Identities=19%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      +..++.|+++|+.++.+|++++++   .|+.|++|.++++|+|+++|.+|++|++..|.|||+.|||+.           
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~-----------   71 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY-----------   71 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----------
Confidence            456799999999999999999987   899999999999999999999999999999999999999954           


Q ss_pred             CCCCeEEEEEEeeccccceeecCCcceEEEEEecCC--CCCCCCCCCEEEEEEEEEecCCcE
Q 008540          246 PPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD--GFERPNEGAVVKVKLIGKLQDGTV  305 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~--g~~~p~~~~~v~v~~~~~~~~g~~  305 (562)
                        +..+++.|....|..... ...|..+......|.  ....-..+++|+|+|+..|++-++
T Consensus        72 --d~~lV~~vpr~~F~~~~~-l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L  130 (196)
T PRK10737         72 --DENLVQRVPKDVFMGVDE-LQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNL  130 (196)
T ss_pred             --ChHHEEEecHHHCCCccC-CCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEE
Confidence              445677777766643221 122222211111110  001123455677777777654433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2.8e-12  Score=123.69  Aligned_cols=155  Identities=31%  Similarity=0.450  Sum_probs=137.6

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH----HHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE----KKQAKALKVACNLNNAACKLKLKDYKQ  466 (562)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (562)
                      +....+..++..++.|+..|++++|..|...|.+++++....+.....+    +..+...+..++.|+|.|-++.+.|..
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~  293 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG  293 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence            3445667788899999999999999999999999999887422211111    344667788889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      |+..|..+++.++...+||||++++++.+.++++|+++++.|....|++.++...+....++..+++.++++.+.+||+
T Consensus       294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999985

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.27  E-value=1.7e-11  Score=125.18  Aligned_cols=134  Identities=16%  Similarity=0.102  Sum_probs=100.8

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      .+....+.+.||.|-..+.|++|+.+|.+|+.+-|+....               |.|+|.+|+.+|..+-||..|+++|
T Consensus       249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHH
Confidence            3456778899999999999999999999999888876544               6777777777777777777777777


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +++|+.+.||.++|.|+-..|+..+|..+|++||.+.|+++++..+|+.++..+...+.+- .+|++.|.
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~-~ly~~al~  382 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT-RLYLKALE  382 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH-HHHHHHHh
Confidence            7777777777777777777777777777777777777777777777777766666655443 35555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.23  E-value=1.5e-10  Score=115.74  Aligned_cols=105  Identities=20%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+.++|..+...|++..|+..|++|+++.|.....               |+++|.++..+|+|++|+..++++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA---------------YNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345668899999999999999999999999998875543               89999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ++|++..+++++|.+|..+|++++|+++|+++++++|++.
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999996

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.19  E-value=2.6e-10  Score=106.57  Aligned_cols=111  Identities=18%  Similarity=0.137  Sum_probs=98.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHH-hhccC--HHHHHHHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV  474 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~k~~~--~~~A~~~~~~a  474 (562)
                      .+..+...|..+...|+++.|+..|++|+++.|.+...               ++++|.++ ...|+  +++|+..++++
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~---------------~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL---------------YAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            35678899999999999999999999999999976654               88999974 67787  59999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++.+|+++.+++.+|.++..+|+|++|+..|+++++++|.+.+-...++
T Consensus       137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            9999999999999999999999999999999999999998765444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.19  E-value=5.4e-11  Score=91.08  Aligned_cols=65  Identities=31%  Similarity=0.474  Sum_probs=62.8

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP  513 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~p  513 (562)
                      ..|.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.||..+| ++++|+++|++|++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            358899999999999999999999999999999999999999999999 79999999999999998

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.19  E-value=7.4e-11  Score=120.61  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=68.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+.+.||.+..+|.++.|.+.|.+|+...|..               ..+++|+|..|..+|++++|+.+|++||+++
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            3344445555555555555555555555444432               3346677777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      |+...||.++|..|-.+|+.+.|+.+|.+|+.++|...++..+|+.+.+
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            7666666666666666666666666666666666666666666655543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.13  E-value=5.3e-10  Score=123.60  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHH------HHHHHHHHHHhcHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKK------QAKALKVACNLNNAACK  458 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~------~~~~~~~~~~~nla~~~  458 (562)
                      .+..+...|..++..|++++|+..|++++.+.|......             ++-..      ........+++++|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            445567778888888888888888888888766432110             00000      00011234577788888


Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK  538 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  538 (562)
                      +.+|+|++|+.+|++++.++|++..+++.+|.+|..+|++++|+..|++++++.|++..+...++.+...+++..++. .
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~-~  488 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI-E  488 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH-H
Confidence            888888888888888888888888888888888888888888888888888888888777777777777666655443 3


Q ss_pred             HHHhhcc
Q 008540          539 FYGNMFA  545 (562)
Q Consensus       539 ~~~~~f~  545 (562)
                      .|.+.+.
T Consensus       489 ~~~~Al~  495 (615)
T TIGR00990       489 KFDTAIE  495 (615)
T ss_pred             HHHHHHh
Confidence            5555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.12  E-value=2.9e-10  Score=108.86  Aligned_cols=117  Identities=22%  Similarity=0.278  Sum_probs=103.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..++.+.+.|+.++.+|+|..|+..|..|++..|++...               ++.+|.+|+.+|+-..|+.++.+||+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~a---------------ifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQA---------------IFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHH---------------HHHHHHHHhhhcCCccchhhHHHHHh
Confidence            346788999999999999999999999999998875433               78999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD---VKLEYKTLKEK  528 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~---~~~~l~~l~~~  528 (562)
                      +.|+..-|...||.+++++|+++.|..+|+++|..+|++..   +...+..+.+.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~  155 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH  155 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999997654   44444444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=1.4e-09  Score=92.63  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..++++|+|++|+..|.+++...+.+..            ...+++++|.++.+.++|+.|+..+++++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            45678899999999999999999999988765431            123478899999999999999999999999988


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++   ..+++.+|.++..++++++|+..++++++..|++..+.....
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            86   678999999999999999999999999999999976655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=1.8e-10  Score=119.42  Aligned_cols=137  Identities=18%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC----------ChHHHHHHHH---------HHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------GDEEKKQAKA---------LKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~~---------~~~~~~~nla~~~~  459 (562)
                      .+.|...||+|--+++++.|+++|++|+.+.|...-.          .+|..+....         -.-.+|+-+|.+|+
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            3678999999999999999999999999999853311          1111111111         12334556666666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      |+++++.|..++++|++++|.|.-.+...|..+.++|+.++|+..|++|+.+||.|+-.+...+.+...+.++.++
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence            6666666666666666666666666666666666666666666666666666666655555555554444444433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.09  E-value=6e-09  Score=86.33  Aligned_cols=134  Identities=19%  Similarity=0.185  Sum_probs=110.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      ..-++.+..+--+|..+-..|+.+.|++.|.+|+.++|...+.               |+|+|+++.-+++.++|+.+++
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHHHH
Confidence            4556777888889999999999999999999999999986665               9999999999999999999999


Q ss_pred             HHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          473 KVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       473 ~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      +++++....    ..+|..||..|..+|+.+.|+.+|+.|-++....  ++..|-.+...-.-.+    +|...||.++
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~lNPYAAlCN----~MLa~~f~ql  174 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVELNPYAALCN----QMLADAFDQL  174 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhcChHHHHHH----HHHHHHHHhc
Confidence            999986543    5689999999999999999999999999997665  6666655544433333    3555555554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=1.5e-09  Score=99.13  Aligned_cols=149  Identities=23%  Similarity=0.190  Sum_probs=98.3

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC----------------hHHHHHH---HHHHHHHHhcH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG----------------DEEKKQA---KALKVACNLNN  454 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~nl  454 (562)
                      ..-..+....+.|..|+++|++..|...+++||+..|+.....                .++..+.   ..-...+++|.
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            3445677888999999999999999999999999988754320                0010100   01123345666


Q ss_pred             HHHHhhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      |.-.+.+|+|++|...+++|+..  -+.....+-++|.|-++.|+++.|..+|+++|+++|+++....++....  +.+.
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~--~~~~  187 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH--YKAG  187 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH--Hhcc
Confidence            66666666666666666666652  1233567778999999999999999999999999999876666665543  3333


Q ss_pred             HHHHHHHHHhhc
Q 008540          533 NKKEAKFYGNMF  544 (562)
Q Consensus       533 ~~~~~~~~~~~f  544 (562)
                      +......|-..|
T Consensus       188 ~y~~Ar~~~~~~  199 (250)
T COG3063         188 DYAPARLYLERY  199 (250)
T ss_pred             cchHHHHHHHHH
Confidence            333444444333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.04  E-value=5e-09  Score=95.99  Aligned_cols=110  Identities=24%  Similarity=0.248  Sum_probs=96.5

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (562)
                      .+...+..+...|..++..|+|++|+.+|++++...+....            ...++.++|.++.++|+|++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45566778899999999999999999999999987654221            234588999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008540          474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~--------------~~~A~~~~~~al~l~p~~  515 (562)
                      ++..+|.+..+++.+|.+|..+++              +++|++.+++++.++|++
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999988              678888888888889888

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.03  E-value=9.3e-10  Score=83.08  Aligned_cols=64  Identities=30%  Similarity=0.313  Sum_probs=60.3

Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      .+|..+++.|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            6889999999999999999999999999999999999999999999999999999999999984

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.01  E-value=8.8e-10  Score=105.61  Aligned_cols=126  Identities=24%  Similarity=0.292  Sum_probs=108.5

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (562)
                      .++..+....+.+......++|..++..+++.++..|.....           +...+--++.||..-+++-+||+.|++
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~e  332 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCKE  332 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHHH
Confidence            456666777788888889999999999999999887764433           223355678999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +|.++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.+.++...
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk  389 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK  389 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988877755443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.01  E-value=4.1e-09  Score=119.92  Aligned_cols=120  Identities=5%  Similarity=-0.009  Sum_probs=92.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..+.+.|++++|+..|.+|+.+.|.+..               +++|+|.++..+|++++|+..++++++++|
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------------YQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            34556666777777777777777777777665443               377888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      +++.+++++|.+|..+|++++|+..|++|++++|++..+...++.+..+....+.
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888777777766555554443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.5e-09  Score=108.53  Aligned_cols=118  Identities=22%  Similarity=0.201  Sum_probs=103.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      -..|..+.-+|..+|-.|++-.|...+.++|.+.+.....               |..||+.|+.+++-.+-..++++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence            4568889999999999999999999999999998876543               7889999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .+||+|+..||.||+.++-+++|++|+++|++|+.|+|+|  +...+..|-...+
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALYR  440 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999  5555555444433

>PRK15331 chaperone protein SicA; Provisional

Probab=99.01  E-value=3.8e-09  Score=92.67  Aligned_cols=104  Identities=13%  Similarity=0.182  Sum_probs=92.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      -+.....|-.+|++|+|+.|...|+-...+.+.+...               ++.||.|+..+++|++|+..|..+..++
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3556788999999999999999999888877766544               7899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      ++++...|+.|.||+.+|+.+.|+.+|..|+. .|.+..+
T Consensus       102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence            99999999999999999999999999999998 4665443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=6.9e-09  Score=103.37  Aligned_cols=131  Identities=16%  Similarity=0.145  Sum_probs=100.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+.-.|.+|...++-..|+..|++|++++|.+...               |+-+|++|--++...=|+-++++|+.+.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            4455667777777777777777777777777766544               7788888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      |++...|.-+|.||.++++.++|+++|++|+...-.+..+...|+++.+++...+++. +.|.+...
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v~  494 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYVE  494 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence            8888888888888888888888888888888887777778888888888888776543 45555544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.6e-09  Score=106.35  Aligned_cols=125  Identities=19%  Similarity=0.184  Sum_probs=113.7

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (562)
                      -.||-|--+++.+.|+.+|++|+++.|.....               |.-+|.-|+.+++-..|+..|++|++++|.+.+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a---------------WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSA---------------WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcchhHH---------------HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            45788888899999999999999999875544               888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      |||-+|++|.-|+...-|+-+|++|+++-|++..++..|+.|..++.+..++.+ -|++.+
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai  459 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAI  459 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHH
Confidence            999999999999999999999999999999999999999999999988776654 555544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.00  E-value=3.6e-09  Score=93.66  Aligned_cols=106  Identities=10%  Similarity=0.014  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 008540          419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL  498 (562)
Q Consensus       419 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~  498 (562)
                      ...|++|+++.|..                  +.++|.++..+|+|++|+..|++++.++|.+..+|+.+|.++..+|++
T Consensus        13 ~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            35678888776642                  457899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          499 DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       499 ~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      ++|+..|++|+.++|++..++..++.+...+++..++.. .|...
T Consensus        75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~A  118 (144)
T PRK15359         75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQTA  118 (144)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999999999999999999999999888877766543 44443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.97  E-value=6.5e-09  Score=97.16  Aligned_cols=123  Identities=12%  Similarity=0.063  Sum_probs=106.1

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      .++..+++..|.+++...|.+...               |.++|.+|+.++++++|+..|+++++++|++..+++.+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~---------------w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQ---------------WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            566778888888888887766544               88999999999999999999999999999999999999998


Q ss_pred             H-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540          492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP  550 (562)
Q Consensus       492 ~-~~l~~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~  550 (562)
                      + ...|+  +++|++.++++++++|++..++..++.+.....++.++. ..|+++.+.....
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~  177 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPR  177 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCC
Confidence            5 67787  599999999999999999999999999988888887665 4777777665443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.97  E-value=3.3e-09  Score=85.19  Aligned_cols=99  Identities=34%  Similarity=0.445  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+...|..++..|++..|+..|.++++..+...               .+++++|.++...+++++|+..+++++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            356788999999999999999999998766432               34778999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      +..+++.+|.++..+++++.|...+.++++++|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999988874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.97  E-value=1.9e-09  Score=85.99  Aligned_cols=83  Identities=29%  Similarity=0.380  Sum_probs=72.0

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      +++|+.|+..|++++...+.+.             ....++++|.||+++|+|++|+..+++ +..++.+...++.+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            6899999999999999887521             122467899999999999999999999 88999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 008540          492 YIQMADLDLAEFDIKKA  508 (562)
Q Consensus       492 ~~~l~~~~~A~~~~~~a  508 (562)
                      |+.+|+|++|++.|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999876

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.2e-08  Score=104.02  Aligned_cols=125  Identities=22%  Similarity=0.176  Sum_probs=97.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC---------hHHHH-HHHHHH----------------HHHHhcHHHH
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEKK-QAKALK----------------VACNLNNAAC  457 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~~~~~-~~~~~~----------------~~~~~nla~~  457 (562)
                      -.|..|.+.+++..|.++|.+|+.+.|.++-..         .++.. ...-++                ...++|+|.+
T Consensus       385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~  464 (611)
T KOG1173|consen  385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA  464 (611)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence            355666666666666666666666666654221         11111 111122                2348999999


Q ss_pred             HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      +.|++.|.+||..++++|.+.|.++.+|--.|.+|..+|+++.|++.|.+||.++|+|.-+...|+.+.+.
T Consensus       465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998888888876544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.94  E-value=8e-09  Score=113.26  Aligned_cols=133  Identities=5%  Similarity=-0.037  Sum_probs=118.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|....+.|.+++|...+..++.+.|.....               +.|+|.+..+++++++|+..|+++|..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a---------------~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA---------------FILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH---------------HHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            36678889999999999999999999999999875543               889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      +|+|..+++.+|.++.++|+|++|++.|++++..+|++..++-.++.+.+.+.+.+++. ..|++.++.
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~  217 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDA  217 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999888887776554 356555543

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.2e-09  Score=112.93  Aligned_cols=140  Identities=23%  Similarity=0.373  Sum_probs=111.2

Q ss_pred             CCCCcCCCCCCCCcCccCccee---eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEc
Q 008540           11 NEMDADMDLPDDAPMMKVGEEK---EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTL   87 (562)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~   87 (562)
                      ..++++..++..-|...+.++.   .|..-.-...++..-++ . ++.||.|+|+|.++. ||..|++...  ..+.|.|
T Consensus       115 v~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~l  189 (441)
T COG0544         115 VELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLEL  189 (441)
T ss_pred             eecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEE
Confidence            5566777777777777776544   22223333444545455 3 899999999999975 9999998865  5699999


Q ss_pred             CCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeee
Q 008540           88 GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL  160 (562)
Q Consensus        88 g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~  160 (562)
                      |+|++||||+++|.||++|++..|.+..+..|....+     +|.+..|.|.|..+........++.+.+.+.
T Consensus       190 Gs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~~  257 (441)
T COG0544         190 GSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKLG  257 (441)
T ss_pred             cCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhcC
Confidence            9999999999999999999999999999999988776     6799999999999998888877777777553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.92  E-value=1.3e-08  Score=95.14  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+..+|...+..|+|..|+..+++|..+.|.+...               |+-+|.+|.++|+++.|...|.+++++.|+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            34559999999999999999999999999988766               889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      ++.++.|+|..|+-.|+++.|...+..+...-+.+..+..+|..+...+....+.+
T Consensus       167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            99999999999999999999999999999888889999999998877776665544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.92  E-value=1.1e-09  Score=105.42  Aligned_cols=110  Identities=23%  Similarity=0.262  Sum_probs=102.9

Q ss_pred             CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (562)
Q Consensus       390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (562)
                      -..++.++.+...+-.+..++..|.++.|+..|..||.+.|.....               |.++|.++++++.+..|++
T Consensus       105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l---------------~~kr~sv~lkl~kp~~air  169 (377)
T KOG1308|consen  105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAIL---------------YAKRASVFLKLKKPNAAIR  169 (377)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhh---------------cccccceeeeccCCchhhh
Confidence            3567889999999999999999999999999999999998876554               8899999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      +|..+++++|+..+.|-.+++++..+|+|++|..+|..|++++-+
T Consensus       170 D~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  170 DCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999998744

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=3e-08  Score=95.72  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=98.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..+++.|+|+.|+..|++++...|.+..            ...+++++|.++.++++|++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999998875432            2234789999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       478 ~p~~~k---a~~~~a~a~~~l--------~~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                      .|++..   +++.+|.++..+        +++++|++.|++++..+|++..+...+
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            998876   799999999987        889999999999999999997655444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=98.91  E-value=1.3e-08  Score=110.86  Aligned_cols=117  Identities=11%  Similarity=-0.071  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +...|..+...|++++|+..|++|+++.|++...               ++++|.++..+|++++|+..++++++++|.+
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADI---------------KYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            4455566666666666666666666665544322               5566666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      +.+++.++.+++.+|++++|+..+++++... |+++.+...++.+...+.+.+
T Consensus       406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~  458 (553)
T PRK12370        406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE  458 (553)
T ss_pred             hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence            5555555555556666666666666666553 455555555555544444433

>TIGR00115 tig trigger factor

Probab=98.91  E-value=4.4e-09  Score=110.03  Aligned_cols=101  Identities=23%  Similarity=0.402  Sum_probs=88.4

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      +.++.||.|.++|+++. +|+.|+++..  .++.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+.     +
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~  216 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A  216 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence            45789999999999986 8999988753  78999999999999999999999999999999999999987765     6


Q ss_pred             CCcEEEEEEEeEeeeccccccCcceeEee
Q 008540          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (562)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (562)
                      |.++.|.|+|.++.....+..+..+++.+
T Consensus       217 gk~~~f~v~i~~I~~~~~peldDefak~~  245 (408)
T TIGR00115       217 GKEATFKVTVKEVKEKELPELDDEFAKEL  245 (408)
T ss_pred             CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            79999999999999876666667776654

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.90  E-value=4.1e-08  Score=89.54  Aligned_cols=110  Identities=18%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ....+..+...|..++..|+|+.|+..|++|+.+.+....            ...+++|+|.++.++|++++|+..|.++
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3446788899999999999999999999999988653211            2335899999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 008540          475 LDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR  516 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~-------~l~~~~-------~A~~~~~~al~l~p~~~  516 (562)
                      +.++|.+..+++++|.+|.       .+|+++       +|+..+++++.++|.+.
T Consensus        99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999       777776       56666667778888774

>PRK12370 invasion protein regulator; Provisional

Probab=98.88  E-value=1.5e-08  Score=110.33  Aligned_cols=96  Identities=14%  Similarity=0.062  Sum_probs=87.0

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      .+++.+|+..+++|+++.|.+...               +..+|.++..++++++|+..|+++++++|+++.+++.+|.+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQA---------------LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN  381 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            355899999999999998876544               78899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                      |..+|++++|+..|+++++++|.+..+...+
T Consensus       382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~  412 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKLDPTRAAAGITK  412 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            9999999999999999999999987654443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.87  E-value=2.7e-09  Score=81.57  Aligned_cols=66  Identities=29%  Similarity=0.385  Sum_probs=60.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhc
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~  477 (562)
                      +..+..+|..++..++|++|+..|++|+++.|.+..               +++|+|.||.+++ ++.+|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------------~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------------AYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------------HHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            677899999999999999999999999999886443               4999999999999 799999999999999


Q ss_pred             CC
Q 008540          478 DS  479 (562)
Q Consensus       478 ~p  479 (562)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            88

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.87  E-value=3.8e-08  Score=93.73  Aligned_cols=134  Identities=14%  Similarity=0.158  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHH--------HHHHHHHhcHHHHHh
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAK--------ALKVACNLNNAACKL  459 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~--------~~~~~~~~nla~~~~  459 (562)
                      .+...|..++..|+++.|+..|++++...+......             .+-.....        ......+.++|.++.
T Consensus        67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (234)
T TIGR02521        67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL  146 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            445566666666666666666666666554322110             00000000        011234667888888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      .+|++++|+..+.+++..+|++..+++.+|.++..+|++++|+..+++++.+.|.+......+..+....+...+
T Consensus       147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            888888888888888888888888888888888888888888888888888877777666666666555444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.86  E-value=1.6e-08  Score=96.17  Aligned_cols=91  Identities=25%  Similarity=0.321  Sum_probs=82.9

Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      +-|.-+++.++|++|+..|.+||+++|+|+-.|.+||.||.+||+|+.|++++++|+.+||....++.-|+.++.-+.++
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            67888889999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHhhc
Q 008540          533 NKKEAKFYGNMF  544 (562)
Q Consensus       533 ~~~~~~~~~~~f  544 (562)
                      .++... |++..
T Consensus       166 ~~A~~a-ykKaL  176 (304)
T KOG0553|consen  166 EEAIEA-YKKAL  176 (304)
T ss_pred             HHHHHH-HHhhh
Confidence            776654 66554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.86  E-value=5.1e-08  Score=92.84  Aligned_cols=145  Identities=18%  Similarity=0.176  Sum_probs=96.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-HHHHHH------HHHHHHhcHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-KKQAKA------LKVACNLNNAACK  458 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-~~~~~~------~~~~~~~nla~~~  458 (562)
                      .+..+...|..++..|++++|+..|+++++..|.....            ..++ ....+.      ....++.++|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            46677889999999999999999999999887653211            0000 000000      1123456677777


Q ss_pred             hhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      ..+|++++|+..+.+++...  +.....++.+|.++..+|++++|+..|.+++..+|++..+...+..+....++..+..
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777777643  3456677777777777888888888888888777777766666666666555554433


Q ss_pred             HHHHHhh
Q 008540          537 AKFYGNM  543 (562)
Q Consensus       537 ~~~~~~~  543 (562)
                       ..+.+.
T Consensus       190 -~~~~~~  195 (234)
T TIGR02521       190 -AYLERY  195 (234)
T ss_pred             -HHHHHH
Confidence             234443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.85  E-value=2.5e-08  Score=113.63  Aligned_cols=97  Identities=10%  Similarity=0.093  Sum_probs=87.9

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .++.|+|.++.++|++++|+..+++++.++|++..+++++|.++..+|++++|+..|++|++++|++..+...++.+...
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 008540          529 MKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f~~  546 (562)
                      +.+..++.. .|++.+..
T Consensus       690 lGd~~eA~~-~l~~Al~l  706 (987)
T PRK09782        690 LDDMAATQH-YARLVIDD  706 (987)
T ss_pred             CCCHHHHHH-HHHHHHhc
Confidence            888766554 56655543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=5.5e-09  Score=108.57  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=116.4

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      .+.-.++.-.|..|+++++|+.|.-+|++|+.+.|.+...               ..-++..+.++|+.++|+..+++|+
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            3455778899999999999999999999999999976644               5678999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                      .+||.|+-..|.+|.++..+++|++|+..|+..-++.|++..+..+++++.++++....+-+
T Consensus       551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~  612 (638)
T KOG1126|consen  551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL  612 (638)
T ss_pred             hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999988776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.85  E-value=3.6e-08  Score=98.54  Aligned_cols=112  Identities=13%  Similarity=0.019  Sum_probs=94.1

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (562)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~  492 (562)
                      ...+.++..+.++|...+.++.           .....|+++|.+|..+|++.+|+.+++++++++|+++.+|+.+|.+|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~-----------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDE-----------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcH-----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3567788889888865443221           23455899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       493 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      ..+|++++|+..|++|++++|++..+...++.+....++.+++
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999998888888776555544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.84  E-value=1.6e-08  Score=78.26  Aligned_cols=70  Identities=26%  Similarity=0.418  Sum_probs=65.2

Q ss_pred             HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540          455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (562)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~  524 (562)
                      +..|++.++|++|+.++++++.++|+++.+++.+|.+|..+|++.+|+++|+++++++|++..+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5678899999999999999999999999999999999999999999999999999999999877666554

>PRK01490 tig trigger factor; Provisional

Probab=98.83  E-value=1.1e-08  Score=108.00  Aligned_cols=100  Identities=25%  Similarity=0.449  Sum_probs=87.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      .++.||.|+|+|+++. +|+.|+++..  .++.|.+|.+.++|||+++|.||++|++++|.++++..|+....     +|
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag  228 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG  228 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence            4789999999999997 8999987754  68999999999999999999999999999999999999987665     57


Q ss_pred             CcEEEEEEEeEeeeccccccCcceeEee
Q 008540          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (562)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (562)
                      ..+.|.|+|.++.....+..+..+++.+
T Consensus       229 k~~~f~v~v~~V~~~~~pel~Defak~~  256 (435)
T PRK01490        229 KEATFKVTVKEVKEKELPELDDEFAKKL  256 (435)
T ss_pred             CeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            9999999999999876666666666643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=6.1e-09  Score=106.63  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ..-.|..|+-.++|++|+.+|+.||...|.+...               |+.||+.+..-.+..+||..|++||++.|+.
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            4468899999999999999999999999987755               8899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      +++.|++|.+++.+|.|++|.++|-.||.+.+.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.80  E-value=1.4e-08  Score=100.79  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=100.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+.+.|++++|++.|++|++..|.+...               ..+++.++...|+++++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~---------------~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA---------------RNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---------------HHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            4567889999999999999999999999999975543               6678889999999999999999988888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      |.++..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...++.+....++.+++. .++++.+..+
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~l  278 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRLL  278 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred             cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            8998999999999999999999999999999999999999999999988888776654 3555555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.80  E-value=2.4e-08  Score=87.31  Aligned_cols=110  Identities=13%  Similarity=-0.006  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008540          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL  500 (562)
Q Consensus       421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~  500 (562)
                      .|.+++...|.+.               ..+.++|.++++.+++++|+..+++++..+|.+..+++++|.+|..++++++
T Consensus         5 ~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   69 (135)
T TIGR02552         5 TLKDLLGLDSEQL---------------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEE   69 (135)
T ss_pred             hHHHHHcCChhhH---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            5667776655432               2367899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       501 A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |+..|+++++++|.+......++.+....++.+++.+ .|......
T Consensus        70 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~  114 (135)
T TIGR02552        70 AIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            9999999999999999999999998888777665543 55555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.79  E-value=1.4e-07  Score=91.67  Aligned_cols=112  Identities=13%  Similarity=0.082  Sum_probs=94.6

Q ss_pred             hHHHHHHH-HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          402 KKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       402 ~~~~G~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      ..+.+..+ ++.|+|++|+..|++.+...|...-            ...+++.+|.+|+.+++|++|+..+.+++...|+
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34555555 6679999999999999999987542            2344789999999999999999999999998887


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          481 N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       481 ~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      +   ..+++++|.+|..+|++++|+..|+++++..|++..+.....++
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            4   78999999999999999999999999999999997655544433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.78  E-value=4.5e-08  Score=108.54  Aligned_cols=115  Identities=21%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH----HHHHHHHHHhcCCC
Q 008540          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR  480 (562)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~----A~~~~~~al~~~p~  480 (562)
                      .|..+++.|++++|+..|.+++...|.+.               .+++++|.++..+|++++    |+..|+++++++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            46677788888888888888887765432               225566666666666664    56666666666666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      +..++..+|.+|..+|++++|+..|++++.++|++..+...+..+.....+..+
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            666666666666666666666666666666666666666666665555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.77  E-value=1.9e-08  Score=76.59  Aligned_cols=67  Identities=31%  Similarity=0.388  Sum_probs=61.7

Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ++.|+|++|+..+++++..+|+|..+++.+|.||++.|++++|+..+++++..+|+++.+...++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999998887776653

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.75  E-value=5.1e-07  Score=87.12  Aligned_cols=131  Identities=17%  Similarity=0.237  Sum_probs=106.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..++++|+|++|+..|++++...|...            ....+.+++|.+|+++++|.+|+..+++.++.+|
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            4466788999999999999999999999887543            2334467999999999999999999999999999


Q ss_pred             CC---HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHH
Q 008540          480 RN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       480 ~~---~ka~~~~a~a~~~l~~------------------~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~  535 (562)
                      ++   ..++|.+|.++..++.                  ..+|+..|++.++..|+..   +++..+..|+.++.+.+-.
T Consensus       101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~  180 (243)
T PRK10866        101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS  180 (243)
T ss_pred             CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            77   5689999999866651                  3578899999999999975   6667777777777776665


Q ss_pred             HHHHHHh
Q 008540          536 EAKFYGN  542 (562)
Q Consensus       536 ~~~~~~~  542 (562)
                      -.++|-+
T Consensus       181 ia~~Y~~  187 (243)
T PRK10866        181 VAEYYTK  187 (243)
T ss_pred             HHHHHHH
Confidence            5555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.74  E-value=8.9e-08  Score=106.18  Aligned_cols=117  Identities=10%  Similarity=0.044  Sum_probs=93.3

Q ss_pred             hhhHHHHHHHHHcCcHHH----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ..+...|..++..|++++    |+..|++++.+.|.+..               ++.++|.++.++|++++|+..+++++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---------------IVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445678888999999885    78999999988876433               37788999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      .++|++..+++.+|.+|..+|++++|+..|++++..+|++......+..+.....+
T Consensus       312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~  367 (656)
T PRK15174        312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK  367 (656)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence            99999988899999999999999999999999998888876544444444444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.73  E-value=3.6e-07  Score=85.97  Aligned_cols=131  Identities=20%  Similarity=0.233  Sum_probs=103.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++++|+|.+|+..|++.+...|...-            ...+.+.+|.++++.++|..|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            466788999999999999999999999999887553            23457789999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          479 SRN---VKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYG  541 (562)
Q Consensus       479 p~~---~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~  541 (562)
                      |++   ..|+|.+|.+++.+.           ...+|+..|+..+...|++.   ++...+..|+.++.+.+-.-.++|-
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~  152 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYY  152 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987   469999999988764           24589999999999999985   6667777787777776665555553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.71  E-value=3.4e-07  Score=108.37  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++++|++++|+..|+++++..|...... .....+......+..++|.++++.+++++|+..|++++..+
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45677889999999999999999999998877544321 01111222233344567889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      |++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+..
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888777766643

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.71  E-value=2.2e-07  Score=85.17  Aligned_cols=134  Identities=17%  Similarity=0.192  Sum_probs=104.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.+..+.+-|..++.+|+|++|...|++|+.. |....            ....+.|++.|.++.|+++.|..+++++|+
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE------------PSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC------------cchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence            34456777788888888888888888887753 21111            123478999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ++|+++-+...++..++..|+|-.|+..+++...--+-+.+...+.-++.+++......  ..|..-++
T Consensus       168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a--~~Y~~qL~  234 (250)
T COG3063         168 LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA--QRYQAQLQ  234 (250)
T ss_pred             hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH--HHHHHHHH
Confidence            99999999999999999999999999999999888777777666666676666654433  34544433

>PLN02789 farnesyltranstransferase

Probab=98.69  E-value=2.9e-07  Score=92.21  Aligned_cols=115  Identities=13%  Similarity=-0.026  Sum_probs=98.0

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH--HHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL  475 (562)
Q Consensus       399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~--~~A~~~~~~al  475 (562)
                      ...+..+|..+.+.+ ++.+|+..+.+++...|.+...               +++++.+..++++.  ++++..++++|
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa---------------W~~R~~~l~~l~~~~~~~el~~~~kal  135 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI---------------WHHRRWLAEKLGPDAANKELEFTRKIL  135 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------hHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            445667777777777 5788888888888887765544               88898888888874  78899999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      +.+|.|..||+.|+.++..+++|++|++++.++++++|+|..++.....+...
T Consensus       136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999888887766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.3e-07  Score=93.16  Aligned_cols=144  Identities=18%  Similarity=0.207  Sum_probs=111.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+.+++-+|.+++-..+.+.|+.+|+++|++.|.....   .......-....+-+.|.-.++.|+|..|.+.|..+|.+
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            35677889999999999999999999999998865422   111111223344667899999999999999999999999


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       478 ~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +|+|    .+.|++||.++..+|+.++|+.+++.|++|||.--.+...-+.|+..+.++..+= +.|.+..+
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV-~d~~~a~q  349 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV-EDYEKAMQ  349 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence            9976    6789999999999999999999999999999988555555555666666555432 34444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.68  E-value=1.7e-07  Score=82.01  Aligned_cols=94  Identities=11%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .+.+|..++..|++++|...++.++.+||.+...|+++|.|+..+|+|++|+..|.+|+.++|+++.....++.|.-.+.
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHhhcc
Q 008540          531 EYNKKEAKFYGNMFA  545 (562)
Q Consensus       531 ~~~~~~~~~~~~~f~  545 (562)
                      +...+.+ .|+....
T Consensus       118 ~~~~A~~-aF~~Ai~  131 (157)
T PRK15363        118 NVCYAIK-ALKAVVR  131 (157)
T ss_pred             CHHHHHH-HHHHHHH
Confidence            7765543 4444333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.68  E-value=4.3e-07  Score=78.11  Aligned_cols=107  Identities=18%  Similarity=0.220  Sum_probs=93.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+.+.|...+++|+|..|+..|+......|...-.            ..+.++++-+|++.++|.+|+..+++-++++|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            456788899999999999999999988877764432            33467899999999999999999999999999


Q ss_pred             CCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 008540          480 RNV---KALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       480 ~~~---ka~~~~a~a~~~l~~---------------~~~A~~~~~~al~l~p~~~~~  518 (562)
                      +|+   -|+|.+|.+++.+..               ...|..+|++++...|++.-+
T Consensus        79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            885   589999999999987               889999999999999998644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.66  E-value=4.7e-07  Score=87.34  Aligned_cols=125  Identities=11%  Similarity=0.068  Sum_probs=103.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--------cCHHHHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC  471 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~~~~~A~~~~  471 (562)
                      ..+...|..+++.+++++|+..|+++++..|.+...            ..+++++|.|+.++        +++++|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            356778999999999999999999999998876543            12366788888876        8999999999


Q ss_pred             HHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHH
Q 008540          472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKMKE  531 (562)
Q Consensus       472 ~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~~~  531 (562)
                      ++++..+|++..++                 +.+|.+|+.+|++.+|+..|+++++..|++   ..++..+..+...+++
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999986442                 467899999999999999999999998765   4677778888777777


Q ss_pred             HHHHH
Q 008540          532 YNKKE  536 (562)
Q Consensus       532 ~~~~~  536 (562)
                      ..+..
T Consensus       219 ~~~A~  223 (235)
T TIGR03302       219 KDLAQ  223 (235)
T ss_pred             HHHHH
Confidence            66554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.64  E-value=7e-07  Score=96.03  Aligned_cols=116  Identities=19%  Similarity=0.188  Sum_probs=80.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh----------HHHHHHHHHHHH---------HHhcHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKALKVA---------CNLNNAACK  458 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------~~~~~~~~~~~~---------~~~nla~~~  458 (562)
                      .+.++..++|.+|.+|+++.|...+..+|+..|.......          +..+-+..-.+.         .|.-+|...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3678889999999999999999999999999887654411          001111111111         122334444


Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p  513 (562)
                      .+++++.+|+-+|.+||+++|.|.+.+++++..|.++|++..|...|.+++.++|
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            5566777777777777777777777777777777777777777777777777777

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.63  E-value=3.1e-07  Score=103.87  Aligned_cols=112  Identities=11%  Similarity=0.059  Sum_probs=102.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..+.+.|++.+|+..|++++...|.+...               +.++|.++...+++++|+..++++++.+|
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~l~~~g~~~eA~~~l~~~l~~~P  114 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY---------------QRGLILTLADAGQYDEALVKAKQLVSGAP  114 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            347888999999999999999999999998865433               67899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ++.. ++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus       115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999 9999999999999999999999999999999988887776654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.62  E-value=4.7e-07  Score=104.24  Aligned_cols=122  Identities=25%  Similarity=0.316  Sum_probs=95.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|++++|+..|++++...|.....               ++.+|.+++..++|++|+..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA---------------KLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh---------------HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345667889999999999999999999999887755433               66778888888888888888888888


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.....+..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~  244 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE  244 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence            888888888888888888888888888888888888887776666666554444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.61  E-value=4.9e-07  Score=107.00  Aligned_cols=127  Identities=20%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-----------HHH-H---------------HHHHHHHHHHh
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------EEK-K---------------QAKALKVACNL  452 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------~~~-~---------------~~~~~~~~~~~  452 (562)
                      ..+...|..++..|++++|+..|++++++.|.+.....           ++. .               ....+....+.
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~  465 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA  465 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence            45677899999999999999999999998776432100           000 0               01112234566


Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ++|.++...+++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++.++...+..+.
T Consensus       466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l  539 (1157)
T PRK11447        466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL  539 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999988776655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.61  E-value=6e-07  Score=93.53  Aligned_cols=121  Identities=13%  Similarity=0.023  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH-------HHHHHHHhcHHHHHhhc
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK-------ALKVACNLNNAACKLKL  461 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~-------~~~~~~~~nla~~~~k~  461 (562)
                      +...|..+++.+++++|+..|+++++..+.....             ..+-....+       .....++..++.+|.++
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            4556666667777777777777777665432111             000000000       00112244555666666


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      |++++|+..++++++.+|++.. +..+|.+|...|++++|+..|+++++.+|++..+...+.
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~  323 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD  323 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            6666666666666666665433 355666666666666666666666666666554443333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.61  E-value=4.2e-07  Score=99.91  Aligned_cols=106  Identities=10%  Similarity=-0.090  Sum_probs=97.5

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ..+.+......++.+++.+++++|+..+++++...|++...               ++++|.|+.++|+|++|+..|+++
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHH
Confidence            34556788899999999999999999999999999886655               889999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      +..+|++.+++..+|.++..+|+.++|...|++|+++...-
T Consensus       181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999986544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.60  E-value=3.9e-07  Score=104.92  Aligned_cols=91  Identities=20%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +++++..+.+.++ .+|+..+++++.+.|+++..+..+|.+|..+|++++|+..|+++++++|.+..+...+..+.....
T Consensus       807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            5566666666666 666666666666666666666667777777777777777777777777766666666666655555


Q ss_pred             HHHHHHHHHHHhh
Q 008540          531 EYNKKEAKFYGNM  543 (562)
Q Consensus       531 ~~~~~~~~~~~~~  543 (562)
                      +..++. ..+++|
T Consensus       886 ~~~~A~-~~~~~~  897 (899)
T TIGR02917       886 RKAEAR-KELDKL  897 (899)
T ss_pred             CHHHHH-HHHHHH
Confidence            544332 344444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.59  E-value=7.5e-07  Score=71.12  Aligned_cols=86  Identities=34%  Similarity=0.435  Sum_probs=78.0

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      +++++|.++...+++++|+..+.++++..|.+..+++.+|.+|...+++++|+..|++++.+.|.+..+...+..+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            37789999999999999999999999999999999999999999999999999999999999999988888888777776


Q ss_pred             HHHHHH
Q 008540          530 KEYNKK  535 (562)
Q Consensus       530 ~~~~~~  535 (562)
                      .+....
T Consensus        82 ~~~~~a   87 (100)
T cd00189          82 GKYEEA   87 (100)
T ss_pred             HhHHHH
Confidence            665544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=9.2e-08  Score=94.87  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=105.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+.++||..|..|+++.|.+.|+.|+.-...+               ..+++|+++.+-++|+.++|+.++-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            3467789999999999999999999999754332               3348899999999999999999999987777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      -+|+..++.+|.+|..+.+...|+++|.+|..+-|+++.+...|+.+..+.....+
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq  610 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ  610 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence            78999999999999999999999999999999999999999999988776655443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.57  E-value=1.2e-06  Score=83.27  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=99.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+.+.+-.+++.|+|..|...|..-++..|+..-.            ..+++.|+.|++.+|+|+.|...+..+.+-.|.
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            37888999999999999999999999999876532            345899999999999999999999999998887


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          481 N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       481 ~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      +   +.+++.+|.|...+++.++|...|+++++-.|+...++..-..+
T Consensus       211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            7   56799999999999999999999999999999997665544433

>PLN02789 farnesyltranstransferase

Probab=98.56  E-value=7.1e-07  Score=89.44  Aligned_cols=121  Identities=11%  Similarity=0.085  Sum_probs=103.2

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCCCCHHHHHH
Q 008540          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR  487 (562)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~  487 (562)
                      +...+.+++|+..+.++|.+.|.+...               +++++.++.+++ .+++++..++++++.+|+|..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~yta---------------W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTV---------------WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            455778999999999999998876543               889999999998 6899999999999999999999999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       488 ~a~a~~~l~~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      |+.++.++++.  ++++..+.++++++|.|-.++...+.+...+...++ +-..+.++..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I~  170 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLLE  170 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence            99999999974  788999999999999999999988888877776543 3445555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.56  E-value=6.6e-07  Score=93.24  Aligned_cols=145  Identities=18%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH-----------HHHHHHhcHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA-----------LKVACNLNNA  455 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~-----------~~~~~~~nla  455 (562)
                      ..+...|..+++.|+++.|+..|.++++..+.....             .++-....+.           .....++++|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            345566777777777777777777776643321100             0000000000           1233467889


Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~~~~~~  534 (562)
                      .++++++++++|+..++++++.+|++..+++.+|.+|..+|++++|++.|++++..+|.+. .+...+..+.....+.++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999998873 455566666555555544


Q ss_pred             HHHHHHHhhcc
Q 008540          535 KEAKFYGNMFA  545 (562)
Q Consensus       535 ~~~~~~~~~f~  545 (562)
                      .. ..+.++..
T Consensus       268 A~-~~l~~~~~  277 (389)
T PRK11788        268 GL-EFLRRALE  277 (389)
T ss_pred             HH-HHHHHHHH
Confidence            43 35555544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.55  E-value=6e-07  Score=91.94  Aligned_cols=86  Identities=30%  Similarity=0.356  Sum_probs=78.0

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +...|...+..++|.+|+..|+++|+++|++..+|+.+|.||+.+|++++|+.++++|+.++|++..+...++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44678889999999999999999999999999999999999999999999999999999999999999888888877776


Q ss_pred             HHHHHH
Q 008540          531 EYNKKE  536 (562)
Q Consensus       531 ~~~~~~  536 (562)
                      ++..+.
T Consensus        85 ~~~eA~   90 (356)
T PLN03088         85 EYQTAK   90 (356)
T ss_pred             CHHHHH
Confidence            655443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=3.1e-07  Score=83.16  Aligned_cols=112  Identities=21%  Similarity=0.130  Sum_probs=101.6

Q ss_pred             cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (562)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (562)
                      .-.++.+++   |.-+.++|+.|-..|-...|...|.+++.+.|..+..               ++.+|.-+...++|+.
T Consensus        56 ~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~v---------------fNyLG~Yl~~a~~fda  117 (297)
T COG4785          56 SRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEV---------------FNYLGIYLTQAGNFDA  117 (297)
T ss_pred             hccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHH---------------HHHHHHHHHhcccchH
Confidence            344555554   6778999999999999999999999999999876654               8899999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      |.+.++.++++||.+--|+.+||.+++.-|+|.-|.+++.+-.+-||+++
T Consensus       118 a~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999999999999999999997

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.52  E-value=1.6e-06  Score=91.13  Aligned_cols=148  Identities=23%  Similarity=0.231  Sum_probs=118.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      +..+..++..|..|...++|.+|+..|++|+.+........       +...+..+.|||..|.+.|+|.+|..+|++|+
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            34455666899999999999999999999999987543221       23456679999999999999999999999999


Q ss_pred             hcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          476 DLD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDN---RDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       476 ~~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~---~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      ++-        |.-...+...+..+..++++++|...+++++++     .++|   ..++..|+.+...+.++++++ .+
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~  389 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL  389 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence            863        233567889999999999999999999999986     2334   457788899999999888776 48


Q ss_pred             HHhhccccCCCC
Q 008540          540 YGNMFAKMTEPK  551 (562)
Q Consensus       540 ~~~~f~~~~~~~  551 (562)
                      |++....+....
T Consensus       390 ~k~ai~~~~~~~  401 (508)
T KOG1840|consen  390 YKKAIQILRELL  401 (508)
T ss_pred             HHHHHHHHHhcc
Confidence            888887764443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.52  E-value=3.2e-07  Score=93.15  Aligned_cols=63  Identities=17%  Similarity=0.072  Sum_probs=60.1

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka---~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      ..++|+|.+|+++++|++|+..|+++|+++|++..+   ||++|.||..+|++++|+++|++|+++
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            348899999999999999999999999999999865   999999999999999999999999998

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.51  E-value=1.3e-07  Score=71.22  Aligned_cols=64  Identities=20%  Similarity=0.267  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (562)
                      .+|..+++.|+|++|+..|+++++..|.+.               .+++.+|.|+..+|++++|+..++++++.+|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578999999999999999999999887644               3488999999999999999999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.48  E-value=3e-07  Score=72.03  Aligned_cols=66  Identities=24%  Similarity=0.270  Sum_probs=57.4

Q ss_pred             HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD----S---RNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~----p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      ....+++|+|.+|..+|+|++|+.++++++.+.    +   .-..+++++|.+|..+|++++|++.+++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            356679999999999999999999999999752    2   23679999999999999999999999999976

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.2e-06  Score=84.06  Aligned_cols=115  Identities=19%  Similarity=0.136  Sum_probs=97.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHHHHHH
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK  473 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~  473 (562)
                      ..++.+.-.|..|+..+++..|...|.+|+++.++++..               +.-+|.+++.+.   .-.++...+++
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            345678899999999999999999999999999987644               445555554433   57889999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      +|..||+|+.+++.+|..++..|+|.+|...+++.+++.|.+..-+..+.+..
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i  271 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI  271 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999998876666665443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.47  E-value=1.3e-06  Score=79.51  Aligned_cols=109  Identities=11%  Similarity=0.014  Sum_probs=86.6

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---H
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---V  482 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~  482 (562)
                      .+.+|-.+.|..+...+...++...             ......+++++|.++..+++|++|+..+++++.+.|+.   .
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   72 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRS   72 (168)
T ss_pred             ccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhH
Confidence            3455555666666666644433211             12255668999999999999999999999999987653   4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      .+++++|.+|..+|++++|+..|++|+.++|.+......+..+..
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            589999999999999999999999999999999888777777766

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.47  E-value=2.4e-06  Score=92.71  Aligned_cols=119  Identities=24%  Similarity=0.242  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+.-.+|.+|-+|+|..+...+..|+.....            ..++...++++|.+|..+|+|++|..+|.+++..++
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            45667788888899999999999888875422            234555689999999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          480 RN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       480 ~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +| .-+++.+|+.|+..|+++.|..+|+++++..|++.+....|+.+.....
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            98 8999999999999999999999999999999999999999999988774

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.46  E-value=1.6e-06  Score=98.28  Aligned_cols=109  Identities=11%  Similarity=0.052  Sum_probs=98.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+..+|..+...|++++|+..+++++...|.+..               +++++|.++..+|++++|+..+++++.++|
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------------l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------------LRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            34457888899999999999999999999887543               388999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++..+++.+|.+++.+++|++|+..++++++.+|+++.+...-+
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999986655433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=3.4e-07  Score=92.63  Aligned_cols=114  Identities=24%  Similarity=0.125  Sum_probs=100.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEK  469 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~  469 (562)
                      .+..+.++..+++||..|..+....|+..|.+++...+.               .+.+|.|+|.+++|.+   +...|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHHH
Confidence            466778899999999999999999999999999988775               3345899999999964   7889999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      +|..|++++|...||+|+++.|+..++++.+|+++...+....|.+.+....
T Consensus       433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~  484 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF  484 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence            9999999999999999999999999999999999999888888866544333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.45  E-value=2.2e-06  Score=72.69  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK  523 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~  523 (562)
                      .++++|..+.++++|++|+..|.+++..+|++   ..+++.+|.++...++++.|+..|++++..+|++   ..+...++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            47899999999999999999999999999877   6799999999999999999999999999999986   45677777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc
Q 008540          524 TLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       524 ~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      .+....++..+.. +.|..+....
T Consensus        84 ~~~~~~~~~~~A~-~~~~~~~~~~  106 (119)
T TIGR02795        84 MSLQELGDKEKAK-ATLQQVIKRY  106 (119)
T ss_pred             HHHHHhCChHHHH-HHHHHHHHHC
Confidence            7776666555443 4666665553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.43  E-value=1.6e-06  Score=81.21  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=79.2

Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      -++..+.+.|+|..|+..++++..++|+++++|.-+|.+|.++|++++|+..|.+|+++.|+++.+..++.-..-...+.
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            37888999999999999999999999999999999999999999999999999999999999999999998877776666


Q ss_pred             HHHHHHH
Q 008540          533 NKKEAKF  539 (562)
Q Consensus       533 ~~~~~~~  539 (562)
                      +.+++.+
T Consensus       185 ~~A~~ll  191 (257)
T COG5010         185 EDAETLL  191 (257)
T ss_pred             HHHHHHH
Confidence            6665543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.42  E-value=1.9e-06  Score=76.56  Aligned_cols=97  Identities=23%  Similarity=0.229  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc----------cCHHHHHHHHHHHHhcCCCCHHH
Q 008540          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA  484 (562)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~----------~~~~~A~~~~~~al~~~p~~~ka  484 (562)
                      |+.|.+.|+.+....|.+...               ++|-|.+++.+          ..+++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            677888888888877765432               33444443333          46788999999999999999999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       485 ~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ++.+|.||..++.           |++|..+|++|..++|+|...+.-|....
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            9999999999875           78999999999999999999888887664

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.40  E-value=1.3e-06  Score=92.58  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (562)
                      +..+.+.++-++|..+..+|-.+.+...               ..|+-+|.++..++++.+|.+.|..|+.+||+++.+.
T Consensus       657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~---------------~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~  721 (799)
T KOG4162|consen  657 ADLFLLSGNDDEARSCLLEASKIDPLSA---------------SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM  721 (799)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhcchhhH---------------HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence            3333444444555555555555544322               2244555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          486 YRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~--~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      .-+|.+|+..|+-..|..  .+..|+++||.|.+++..++.+.+.+....
T Consensus       722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence            555555555555554544  555555555555555555555555554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.40  E-value=3.2e-06  Score=94.79  Aligned_cols=147  Identities=12%  Similarity=0.006  Sum_probs=104.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-C----------h--HHHHHHHHH------HHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-G----------D--EEKKQAKAL------KVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~----------~--~~~~~~~~~------~~~~~~nla~~~~  459 (562)
                      +.....++...+++|+|..|+..|.++++..|..... .          .  +-...++..      ....+..+|.++.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            4467788899999999999999999999998876311 0          0  000111111      1222334466888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      .+|+|++|+..|+++++.+|+|+.+++-++.+|..+++.++|++.++++..++|.+... ..+..+........ +.-..
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHH
Confidence            88999999999999999999999999988899999999999999999999999987655 33333433323332 25667


Q ss_pred             HHhhcccc
Q 008540          540 YGNMFAKM  547 (562)
Q Consensus       540 ~~~~f~~~  547 (562)
                      |++++...
T Consensus       192 ~ekll~~~  199 (822)
T PRK14574        192 SSEAVRLA  199 (822)
T ss_pred             HHHHHHhC
Confidence            77777654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.40  E-value=3.4e-06  Score=91.56  Aligned_cols=145  Identities=19%  Similarity=0.210  Sum_probs=117.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      +.+.+.|..+|..|++..|...|.+|+..+......  ++.   +...++.-+|+|.|.-.++++..|...|..++..+|
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp  527 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP  527 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence            457788999999999999999999999874422211  111   233466788999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP  550 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~  550 (562)
                      ..+.+|.|+|......++..+|..+++.++.++..|++++..++.+.....++...++ -|..++++....
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k-~f~~i~~~~~~~  597 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK-KFETILKKTSTK  597 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc-HHHHHHhhhccC
Confidence            9999999999777788899999999999999999999999999988877776655443 455555554433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.39  E-value=2.9e-06  Score=77.62  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=74.0

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ...+++++|.++...+++++|+.+|++++...|+.   ..+++++|.+|..+|++++|+..|++++.++|++......++
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            45568999999999999999999999999887653   579999999999999999999999999999999988877777


Q ss_pred             HHHHHHH
Q 008540          524 TLKEKMK  530 (562)
Q Consensus       524 ~l~~~~~  530 (562)
                      .+...+.
T Consensus       114 ~~~~~~g  120 (172)
T PRK02603        114 VIYHKRG  120 (172)
T ss_pred             HHHHHcC
Confidence            7765543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.38  E-value=4.6e-07  Score=68.79  Aligned_cols=67  Identities=33%  Similarity=0.369  Sum_probs=58.7

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008540          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (562)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~  488 (562)
                      +++.|+|++|+..|++++...|.+...               ++++|.||++.|++++|...+++++..+|+++.++.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEA---------------RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHH---------------HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            478899999999999999998875543               77999999999999999999999999999988777766


Q ss_pred             HH
Q 008540          489 AQ  490 (562)
Q Consensus       489 a~  490 (562)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.37  E-value=2.2e-06  Score=67.07  Aligned_cols=73  Identities=25%  Similarity=0.310  Sum_probs=60.9

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|+|++|+..|++|+++......        .....+.+++|+|.||..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45778899999999999999999999999999443322        1233567799999999999999999999999997


Q ss_pred             c
Q 008540          477 L  477 (562)
Q Consensus       477 ~  477 (562)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            6

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=6.8e-06  Score=83.34  Aligned_cols=124  Identities=15%  Similarity=0.057  Sum_probs=100.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ....-++..+|..|+++.|...+...+...|++.-.               +.-++..+++.++.++|++.+++++.++|
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~P  371 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALDP  371 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            345667778888888888888888877776654432               44567888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK  538 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  538 (562)
                      +..-..+++|.+|+++|++.+|+..++..+.-+|+++..+..|+.....+....+....
T Consensus       372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            98888889999999999999999999999999999999999998888777765554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=5.4e-06  Score=73.52  Aligned_cols=57  Identities=21%  Similarity=0.162  Sum_probs=26.1

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      .+++|.+++.+++|++|+..++.+ .-.+-...++..+|.+|..+|++++|+..|++|
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            444455555555555555554331 112222334444555555555555555555444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.34  E-value=2.3e-06  Score=65.96  Aligned_cols=70  Identities=23%  Similarity=0.301  Sum_probs=63.3

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (562)
                      .+.++++++|+.|+..+++++.+.|.+...               +.++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            467899999999999999999999987765               88999999999999999999999999999998887


Q ss_pred             HHHHH
Q 008540          486 YRRAQ  490 (562)
Q Consensus       486 ~~~a~  490 (562)
                      .-+++
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            66654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=1.4e-06  Score=91.77  Aligned_cols=129  Identities=16%  Similarity=0.244  Sum_probs=108.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      +.+..|+-.+.+++|.+|.++++.++++.+-..               ..|++++.|.+++++++.|..+|.+++.++|+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            344455555667899999999999988876543               33899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      |..+|.+++.+|..+++-.+|...++.|++.+-+|..++.++-.+.......+++- +.|.++..
T Consensus       552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~-~A~~rll~  615 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI-KAYHRLLD  615 (777)
T ss_pred             chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH-HHHHHHHH
Confidence            99999999999999999999999999999999888888888888887777776543 46666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=1.1e-06  Score=84.31  Aligned_cols=133  Identities=14%  Similarity=0.097  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC----------C-hHHHH--------HHHHHHHHHHhcHHHHHhhcc
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------G-DEEKK--------QAKALKVACNLNNAACKLKLK  462 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~-~~~~~--------~~~~~~~~~~~nla~~~~k~~  462 (562)
                      +..++..+-..++++.|++.|+.+++..+.+...          . ..|..        +.-.....+++|+|+|++--+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            3444455555566666666666666665543211          0 01110        000112346999999999999


Q ss_pred             CHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      +++-++..+.+|+..-.   .-...||++|.+....|++..|..+|+-||..||++.++..+|+.+..+......
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~  447 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG  447 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence            99999999999998643   3478999999999999999999999999999999999999999999877766543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=7.2e-06  Score=84.56  Aligned_cols=89  Identities=10%  Similarity=0.063  Sum_probs=81.6

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .++.-||..|.-.++|++|+.+++.||..+|++...|.|+|-.+..-.+.++|+..|++|++|.|+...++..|+....-
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN  510 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN  510 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence            45667889999999999999999999999999999999999999999999999999999999999999899999988877


Q ss_pred             HHHHHHHHH
Q 008540          529 MKEYNKKEA  537 (562)
Q Consensus       529 ~~~~~~~~~  537 (562)
                      +..++++-+
T Consensus       511 lG~ykEA~~  519 (579)
T KOG1125|consen  511 LGAYKEAVK  519 (579)
T ss_pred             hhhHHHHHH
Confidence            887776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.28  E-value=4.4e-06  Score=82.92  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=105.4

Q ss_pred             HHHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ..+..+.+.|..|... ++++.|+..|++|+++.......         .....++.++|.++.++++|++|+..|+++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4567788888888888 99999999999999998765422         3355678899999999999999999999998


Q ss_pred             hcCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540          476 DLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT  548 (562)
Q Consensus       476 ~~~p~------~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~  548 (562)
                      ...-+      +++ .+++.+.|++.+|++-.|...|++....+|.... -.+...+...+...+......|.......+
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d  261 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAVAEYD  261 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence            75321      233 5578899999999999999999999999997543 334444555566666655556665555444


Q ss_pred             CCC
Q 008540          549 EPK  551 (562)
Q Consensus       549 ~~~  551 (562)
                      +..
T Consensus       262 ~~~  264 (282)
T PF14938_consen  262 SIS  264 (282)
T ss_dssp             TSS
T ss_pred             ccC
Confidence            433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.27  E-value=1.5e-05  Score=83.84  Aligned_cols=132  Identities=23%  Similarity=0.212  Sum_probs=102.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+.+.|..|++.|+|.+|..+|++|+++........       ..-....++|+++.+..++++++|+.++++++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            46688899999999999999999999999999987633222       22344558899999999999999999999998


Q ss_pred             hcC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHH
Q 008540          476 DLD-----S---RNVKALYRRAQAYIQMADLDLAEFDIKKALEID--------PDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       476 ~~~-----p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--------p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      ++-     +   .-.+.+-++|.+|+.+|+|++|.+.|++|+...        +........++....+.+.+.+
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~  427 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE  427 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence            753     2   337888899999999999999999999999763        2222344555555555554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.24  E-value=1.3e-05  Score=89.23  Aligned_cols=131  Identities=16%  Similarity=0.124  Sum_probs=90.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHH--------
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL--------  470 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~--------  470 (562)
                      ...+....+.+...+++++|++....+++..|.....               |+.+|..++..+++..|...        
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv~~l~~~~~   95 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLLNLIDSFSQ   95 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhhhhhhhccc
Confidence            3455667778888999999999999999988876655               44444454444443333332        


Q ss_pred             ----------HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          471 ----------CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (562)
Q Consensus       471 ----------~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (562)
                                |...+. .++|-.|++.+|.||-++|++++|.+.|+++++++|+|..+...++-.....  ..++...++
T Consensus        96 ~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~  172 (906)
T PRK14720         96 NLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYL  172 (906)
T ss_pred             ccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHH
Confidence                      222222 3455578888888888888888888888888888888888888887766666  334444566


Q ss_pred             Hhhcccc
Q 008540          541 GNMFAKM  547 (562)
Q Consensus       541 ~~~f~~~  547 (562)
                      ++....+
T Consensus       173 ~KAV~~~  179 (906)
T PRK14720        173 KKAIYRF  179 (906)
T ss_pred             HHHHHHH
Confidence            6555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=2.5e-05  Score=79.34  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +--.|..+++.++..+|.+.+++++.+.|.....               ..|+|.++++.|++++|+..++..+.-+|++
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l---------------~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPLL---------------QLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH---------------HHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            4457888999999999999999999999976433               7899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      +..|..+|++|..+|+-.+|...+-..+.+..+-..+...+....++.
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999998887777777777777666555555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.23  E-value=2.2e-06  Score=68.12  Aligned_cols=76  Identities=30%  Similarity=0.410  Sum_probs=67.0

Q ss_pred             ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                      +++|+.|+..++++++.+|.  +..+++.+|.||+.+|+|++|+..+++ ++.+|.+..+...+++|...+++++++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  567888899999999999999999999 88999998899999999999988887654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.23  E-value=1.9e-05  Score=66.92  Aligned_cols=98  Identities=18%  Similarity=0.005  Sum_probs=84.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+.+.|..+-..|+.++|+..|++|+......            ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            45678889999999999999999999853321            123446789999999999999999999999998787


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       481 ---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                         +......++.++..+|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               888888899999999999999999988875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=2.9e-05  Score=74.78  Aligned_cols=148  Identities=18%  Similarity=0.160  Sum_probs=112.9

Q ss_pred             cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHH---------------
Q 008540          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQ---------------  442 (562)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~---------------  442 (562)
                      +.+++.++|   ...+.+.|..|+..|-|++|...|...++.-......         ...+|++               
T Consensus        98 spdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~  174 (389)
T COG2956          98 SPDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT  174 (389)
T ss_pred             CCCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence            344566655   3456788999999999999999997766522111000         0011111               


Q ss_pred             HHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 008540          443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLE  521 (562)
Q Consensus       443 ~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~  521 (562)
                      .+-..+..|+.+|..++...+.+.|+....+|++.+|+++.|-.-+|.+++..|+|+.|++.++++++.||+. .++...
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            1123456788999999999999999999999999999999999999999999999999999999999999997 477778


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008540          522 YKTLKEKMKEYNKKEA  537 (562)
Q Consensus       522 l~~l~~~~~~~~~~~~  537 (562)
                      |..|+..+.+...-..
T Consensus       255 L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         255 LYECYAQLGKPAEGLN  270 (389)
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            8888888776655443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=6.4e-05  Score=70.14  Aligned_cols=124  Identities=21%  Similarity=0.164  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHHHH------HHHHhcHHHHHhhcc
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKALK------VACNLNNAACKLKLK  462 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~~~------~~~~~nla~~~~k~~  462 (562)
                      .+-.|..+-..|+|+.|++.|+..+.-.|.+...             +.+-.+.+..+.      ..+|..+|..|+..+
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            3456777778999999999999988877654322             112222333322      346778999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      +|++|.-++++++-+.|.|+-.+.|+|..++-+|   +++-|+++|.+|++++|.|......+-.|
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            9999999999999999999999999999999887   57789999999999999775444444333

>TIGR00115 tig trigger factor

Probab=98.16  E-value=1e-05  Score=84.75  Aligned_cols=84  Identities=17%  Similarity=0.291  Sum_probs=72.2

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      .+..||.|+++|.+.. +|+.++++  .+..|.+|.+.+++||+++|.||+.|+++.|.+|....|+..+.         
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---------  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---------  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence            4678999999999977 78888765  78999999999999999999999999999999986657764433         


Q ss_pred             CCCCeEEEEEEeecccc
Q 008540          246 PPNATLQIALELVSWKT  262 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (562)
                       ++.++.|.|++.++..
T Consensus       216 -~gk~~~f~v~i~~I~~  231 (408)
T TIGR00115       216 -AGKEATFKVTVKEVKE  231 (408)
T ss_pred             -CCCeEEEEEEEEEecc
Confidence             6788999999999765

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.15  E-value=3.8e-05  Score=78.91  Aligned_cols=142  Identities=11%  Similarity=-0.004  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------Ch--HHHHH-HH------HHHHHHHhcHHHHH
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EEKKQ-AK------ALKVACNLNNAACK  458 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--~~~~~-~~------~~~~~~~~nla~~~  458 (562)
                      ...-+|..++..|+++.|+..++++++..|.+...             ..  ..... +.      .....++.++|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            34467889999999999999999999987765411             00  00000 00      01123456788999


Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV----KLEYKTLKEKMKEYNK  534 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~----~~~l~~l~~~~~~~~~  534 (562)
                      ..+|++++|+..++++++++|++..+++.+|.+|..+|++++|+..+++++.+.|.+...    ...+..+.....+.++
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999999999999998754322    2345666555555544


Q ss_pred             HHHHHHHhh
Q 008540          535 KEAKFYGNM  543 (562)
Q Consensus       535 ~~~~~~~~~  543 (562)
                      .. ..|...
T Consensus       205 A~-~~~~~~  212 (355)
T cd05804         205 AL-AIYDTH  212 (355)
T ss_pred             HH-HHHHHH
Confidence            43 344444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=98.14  E-value=2.9e-05  Score=81.51  Aligned_cols=139  Identities=15%  Similarity=0.058  Sum_probs=108.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      ........+..+...|++++|....+++++..|++....           .  ..-+....+..++...++..++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----------~--~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----------L--PLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----------h--HHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            455667788899999999999999999999888654320           0  112333445568889999999999999


Q ss_pred             CCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008540          478 DSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPK  551 (562)
Q Consensus       478 ~p~~~--ka~~~~a~a~~~l~~~~~A~~~~~--~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  551 (562)
                      +|+++  ..+..+|..++++|+|++|+++|+  ++++.+|++.... .+..+...+.+.+++ +.+|++-...+-...
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A-~~~~~~~l~~~~~~~  404 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA-AAMRQDSLGLMLAIQ  404 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHHHHhccc
Confidence            99999  888899999999999999999999  6888899886644 888888877775554 567777655554433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.13  E-value=5.4e-05  Score=80.97  Aligned_cols=118  Identities=17%  Similarity=0.052  Sum_probs=89.8

Q ss_pred             HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCC--------------C---hHHHHHHHHH------------
Q 008540          399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------  446 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~--------------~---~~~~~~~~~~------------  446 (562)
                      |-.+.-+|..++.+..   +..|+.+|++|+++.|.....              .   ......+...            
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            3445566666666544   889999999999998864211              1   1111111111            


Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      ...+|.-+|..+...|++++|...+++|+.++| +..+|+.+|++|...|++++|++.|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            113466678888889999999999999999999 5789999999999999999999999999999999864

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.12  E-value=9.4e-05  Score=65.54  Aligned_cols=111  Identities=18%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      ..+...|......++...++..+.+|+.+.....       .+.......++.....+...++..+...|++++|+..|.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            4455667777888899999999999999865321       222345567778888889999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      +++..+|.+..+|..+-.+|..+|+..+|+..|+++..
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.11  E-value=8.5e-06  Score=80.89  Aligned_cols=132  Identities=20%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+......+++.++++++...+.++........             ...++..+|.++.+.|++++|+..++++|+.+|
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P  177 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------------SARFWLALAEIYEQLGDPDKALRDYRKALELDP  177 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            3444555677888999999999988775332111             223477899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +|..++..++.++..+|++++|++.++...+..|+++.++..++.+...+++.+++- .+|.+...
T Consensus       178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al-~~~~~~~~  242 (280)
T PF13429_consen  178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL-EYLEKALK  242 (280)
T ss_dssp             T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc-cccccccc
Confidence            999999999999999999999999999998888888888899999888888766544 35555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.11  E-value=4.5e-05  Score=82.52  Aligned_cols=132  Identities=18%  Similarity=0.169  Sum_probs=95.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      .-|+..+...-+.|++.+|.-+|.+||.+.|.+...               ..+++..|.++|++..|...+.+++.++|
T Consensus       208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~---------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL---------------IYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH---------------HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            456777777778888999999999999888875433               77999999999999999999999999999


Q ss_pred             ----CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540          480 ----RNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT  548 (562)
Q Consensus       480 ----~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~  548 (562)
                          ....+..+ .++.+...++-+.|++.++.++.. -.+......+..+....- ..++-.+.-.++...-.
T Consensus       273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l-~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK-EKDEASLEDLNILAELFL-KNKQSDKALMKIVDDRN  344 (895)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHH-HhHHHHHhhHHHHHHhc
Confidence                33444444 489999999999999999999983 233333444443333333 33334445555555444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.10  E-value=5.1e-06  Score=53.44  Aligned_cols=34  Identities=41%  Similarity=0.614  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      +++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR00540 hemY_coli hemY protein

Probab=98.08  E-value=8.7e-05  Score=77.86  Aligned_cols=124  Identities=18%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      +.+.+.....+|...+..|+|..|.+...++.+..+....               .+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~---------------~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL---------------NLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5556778889999999999999999999998887553211               1333455555566666666666666


Q ss_pred             HhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       475 l~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      .+..|++. .+....+..++..|+++.|+..+++.++.+|+++.+...+..+....++..
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            65555543 233334666666666666666666666666666655555555554444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.07  E-value=2.9e-05  Score=79.18  Aligned_cols=73  Identities=21%  Similarity=0.237  Sum_probs=63.4

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (562)
                      ...+.+..+.++|+.|++.|+|++|+..|++||.+.|++...            ..+|+|+|.||.++|++++|+.++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345567889999999999999999999999999999875421            13489999999999999999999999


Q ss_pred             HHhcC
Q 008540          474 VLDLD  478 (562)
Q Consensus       474 al~~~  478 (562)
                      |+++.
T Consensus       138 ALels  142 (453)
T PLN03098        138 ALRDY  142 (453)
T ss_pred             HHHhc
Confidence            99973

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.06  E-value=4e-05  Score=86.12  Aligned_cols=113  Identities=8%  Similarity=-0.020  Sum_probs=92.2

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (562)
                      |..+...|+|++|+..|+++++..|.++..               +.-++..+...+++++|+..+++++..+|.+... 
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence            456667799999999999999999876543               5567899999999999999999999999986554 


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       486 ~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      ..++.++..++++.+|++.|+++++++|++.++..++-.+....+....
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~  221 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEP  221 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Confidence            4455566567778779999999999999999888887776666554443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.05  E-value=1.4e-05  Score=85.63  Aligned_cols=124  Identities=31%  Similarity=0.463  Sum_probs=107.6

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--cCHHHHH
Q 008540          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAE  468 (562)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A~  468 (562)
                      +.+..+..+...+++||.+|++++|..|.-.|..++.++|.+...           ...++.|++.|++.+  ++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhc
Confidence            556778889999999999999999999999999999999955433           455688998888765  5999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..|+-|+...|...+++++++.+|..++.++-|.+++.-....+|++.++...+.++
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el  170 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL  170 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999996555544433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.04  E-value=0.00011  Score=76.87  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (562)
                      -+.+.+.....+|...+..|+|+.|.+...++-+..+. +              ...+...|.+..++|+++.|..++.+
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p--------------~l~~llaA~aA~~~g~~~~A~~~l~~  143 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P--------------VVNYLLAAEAAQQRGDEARANQHLER  143 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h--------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35567777888999999999999998666665443211 1              01133335555788888888888888


Q ss_pred             HHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       474 al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      +.+.+|++. -.....+..+...|+++.|+..++++.+.+|+|+.+...+..+....++..+
T Consensus       144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            888888774 3344558888888888888888888888888888888877777666655544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.04  E-value=0.00024  Score=62.87  Aligned_cols=133  Identities=19%  Similarity=0.125  Sum_probs=99.5

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      +.+.+..........+..++...+...+.+.+.-.+...            +...+.+.+|.+++..|+|++|+..++.+
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345566666777777788899888888888777655432            23445778999999999999999999999


Q ss_pred             HhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          475 LDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG  541 (562)
Q Consensus       475 l~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~  541 (562)
                      +...|+.   ..+.+++|.+++.+|+|++|+..++.+ .-.+-...+...++.+.....+..++. ..|+
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~-~~y~  142 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEAR-AAYQ  142 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence            9987654   568999999999999999999999763 223334566777777777776665543 3444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.03  E-value=5.3e-05  Score=73.78  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             HHHhcHHHHH-hhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 008540          449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLE  521 (562)
Q Consensus       449 ~~~~nla~~~-~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~  521 (562)
                      ...++.|..+ ++.++|++|+..|+..+...|++   +.++|++|.+|+..|++++|+..|+++++..|++   .+++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3466788876 67899999999999999999988   5899999999999999999999999999999986   456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          522 YKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      ++.+...++... +.+..|+......
T Consensus       223 lg~~~~~~g~~~-~A~~~~~~vi~~y  247 (263)
T PRK10803        223 VGVIMQDKGDTA-KAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHcCCHH-HHHHHHHHHHHHC
Confidence            666666555443 3445666665544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.02  E-value=4.3e-05  Score=79.81  Aligned_cols=118  Identities=15%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+..+....|..++|...++..++.+...+.....               +.-.|+....+|+-++|...+..++..|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            35566677888899999999988888876655433               334566667788888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      +.-+|.-+|..+..-.+|++|+++|+.|+.++|+|..+++-+..++..++...
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            88888888888888888888888888888888888888888887777766544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.01  E-value=3.7e-05  Score=79.02  Aligned_cols=99  Identities=15%  Similarity=0.021  Sum_probs=86.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..+...|++.+|+..|++++.+.|.+...               +.++|.+++..|++++|+..+++++...|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~---------------~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA---------------VHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH---------------HHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            344567889999999999999999999998876433               78899999999999999999999999887


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540          480 RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (562)
Q Consensus       480 ~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p  513 (562)
                      .+    ...++.+|.+|..+|++++|+..|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            43    24567899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK01490 tig trigger factor; Provisional

Probab=98.01  E-value=3e-05  Score=81.93  Aligned_cols=84  Identities=15%  Similarity=0.283  Sum_probs=71.0

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      .+..||.|+++|.+.. +|..++.+  .+..|.+|.+.+++||+++|.||+.|+++.|.++....|+...          
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----------  225 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----------  225 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----------
Confidence            4689999999999998 77777754  7899999999999999999999999999999987554665432          


Q ss_pred             CCCCeEEEEEEeecccc
Q 008540          246 PPNATLQIALELVSWKT  262 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (562)
                      -++.+..|.|.|.++..
T Consensus       226 lagk~~~f~v~v~~V~~  242 (435)
T PRK01490        226 LAGKEATFKVTVKEVKE  242 (435)
T ss_pred             CCCCeEEEEEEEEEecc
Confidence            25788899999998765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.98  E-value=7.3e-05  Score=79.67  Aligned_cols=103  Identities=23%  Similarity=0.195  Sum_probs=95.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH--HHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD  476 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~--~~~~al~  476 (562)
                      +..+...|..+..+|++.+|...|..|+.+.|.+...               ...+|.|+++.|+-.-|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            4567889999999999999999999999999987654               6789999999998887877  9999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      +||.|.+|||.+|.++.++|+.+.|.++|..|++|++.++
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999999999999999999886

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=4.3e-05  Score=73.61  Aligned_cols=99  Identities=18%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (562)
                      .+.|.+|++.|.+.+|.+.++.++...+.-                ..+..++.+|.+..+...|+..+.+.|+.-|.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V  290 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV  290 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence            478999999999999999999999765521                1244455555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      ..+.-.|++|..|+++++|.+.|+.+++++|.|.+
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence            55555555555555555555555555555555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.97  E-value=8.1e-06  Score=52.36  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF  503 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~  503 (562)
                      .|+++|+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.96  E-value=1.9e-05  Score=50.63  Aligned_cols=34  Identities=41%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      +++++.+|.+|+.+|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3678888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.00029  Score=68.08  Aligned_cols=111  Identities=16%  Similarity=0.148  Sum_probs=96.2

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      +.+.|..+.+.+..+....+++.|.....+|+...+.+...               -.-+|.+++..|+|+.|++.++.+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence            45677888899999999999999999999999988876654               346899999999999999999999


Q ss_pred             HhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540          475 LDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (562)
Q Consensus       475 l~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~  520 (562)
                      ++.||.. ...+-.+..||.++|+.++.+.++.++.+..++......
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~  287 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM  287 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH
Confidence            9999987 567788999999999999999999999998877643333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.94  E-value=8.4e-05  Score=78.78  Aligned_cols=138  Identities=14%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------------CCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (562)
                      +....+-....+|...|+..+|...-.+-++. +.++             +..+.-++..+.....+...+|...+..++
T Consensus       422 Erlemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~  500 (777)
T KOG1128|consen  422 ERLEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD  500 (777)
T ss_pred             HhHHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence            33344445555666666666666665555552 1111             111222233333334444555666677899


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      |.+|..+++..++++|-....||++|.|.+++++++.|.++|.++..++|+|.+++.++...+-++.+..++
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra  572 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA  572 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999888777766543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.93  E-value=6.3e-05  Score=53.32  Aligned_cols=48  Identities=25%  Similarity=0.376  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ..+|.+|.+++++|+|++|+.+++.+|+++|+|..+..+...+..++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            468899999999999999999999999999999988888877766654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.92  E-value=2.5e-05  Score=53.55  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~  524 (562)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|.+++..|..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467777777777777777777777777777777777666653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.91  E-value=4.3e-05  Score=78.28  Aligned_cols=92  Identities=20%  Similarity=0.250  Sum_probs=63.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (562)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (562)
                      .+..++..++-.+|++...+++...|.+.               .++...|..+++.++++.|+..++++.++.|++.++
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~---------------~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~  270 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDS---------------ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET  270 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence            34455555666667777777665554432               224556777777888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          485 LYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      |+.+|.||..+|+|+.|+..++.+--+
T Consensus       271 W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  271 WYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            888888888888888887777655433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.90  E-value=0.00078  Score=63.71  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=104.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+-++|...++.|+|.+|++.|+......|..+-.            -.+.+.++-+++|.++|+.|+...++-+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            5678889999999999999999999988776654422            2336688999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          479 SRNV---KALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYG  541 (562)
Q Consensus       479 p~~~---ka~~~~a~a~~~l~~--------~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~  541 (562)
                      |+++   -++|-+|.++...=+        -.+|...|+..+.-.|+..   ++...+..++..+...+-.-.++|.
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~  178 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL  178 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9874   578889999877532        3588899999999999975   6777777777777766655544443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.89  E-value=2.6e-05  Score=75.40  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ..|.-|+|+|.|++||.+|.+++..+|.|+-.+.+||.||+++..|-.|..+++.|+.||-..
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            678899999999999999999999999999999999999999999999999999999998554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.88  E-value=0.00021  Score=74.72  Aligned_cols=129  Identities=15%  Similarity=0.138  Sum_probs=101.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      ........+..+...|+.+.|.....++++. +.+..                 .-+...++..+++++++..+++.++.
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~-----------------l~~l~~~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER-----------------LVLLIPRLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH-----------------HHHHHhhccCCChHHHHHHHHHHHhh
Confidence            3445567788999999999999999999873 22211                 01222334559999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      +|+++..++-+|+.++..++|++|++.|+++++++|++.. ...+..+.....+.++. ...|+.-...
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l~~  390 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGLML  390 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHHhh
Confidence            9999999999999999999999999999999999999865 34677787777776655 4566655443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.88  E-value=0.00023  Score=60.35  Aligned_cols=85  Identities=19%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR---NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK  523 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~---~~~~~~~l~  523 (562)
                      +++++|.++-.+|+.++|+..|++++.....   ...++..+|.+|..+|++++|+..|++++.-.|+   +..++..+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            4789999999999999999999999997543   3789999999999999999999999999999888   667776666


Q ss_pred             HHHHHHHHHHH
Q 008540          524 TLKEKMKEYNK  534 (562)
Q Consensus       524 ~l~~~~~~~~~  534 (562)
                      .+.....+.++
T Consensus        83 l~L~~~gr~~e   93 (120)
T PF12688_consen   83 LALYNLGRPKE   93 (120)
T ss_pred             HHHHHCCCHHH
Confidence            65544444443

>PRK11906 transcriptional regulator; Provisional

Probab=97.86  E-value=0.00011  Score=75.04  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc---------cCHHHHHHHHHHHHhcCCCC
Q 008540          414 KYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       414 ~~~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~---------~~~~~A~~~~~~al~~~p~~  481 (562)
                      ....|+..|.+|+   .+.|...               .+|.-+|.||+.+         ..-.+|.+..++|++++|.+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a---------------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKT---------------ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccH---------------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            4678888999999   5544322               2355556555543         34567888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      +.|++.+|.++...++++.|...|++|+.++|+...+....+.+...-
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~  385 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN  385 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence            888888888888888888888888888888888888777776654333

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.86  E-value=2.9e-05  Score=76.83  Aligned_cols=111  Identities=15%  Similarity=0.207  Sum_probs=88.8

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      .++..+...+-+.||.||-.|+|++|+...+.-+.+......-         ...-.++.|+|.||.-+++|+.|+++|.
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---------AaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---------AAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---------HHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            3455666778899999999999999999999888776542211         1223458999999999999999999999


Q ss_pred             HHHhcC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          473 KVLDLD----S--RNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       473 ~al~~~----p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      +++.+.    .  ...+.-|.+|..|.-+.++++|+.++.+-|.+.
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            987642    1  235678999999999999999999999888764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=9.7e-05  Score=76.18  Aligned_cols=133  Identities=20%  Similarity=0.134  Sum_probs=113.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|.-|+--+++.+|.++|.+|..+.+.-...               |.-.|..+.-.++.++|+..|..|-++-
T Consensus       312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa---------------Wl~fghsfa~e~EhdQAmaaY~tAarl~  376 (611)
T KOG1173|consen  312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA---------------WLAFGHSFAGEGEHDQAMAAYFTAARLM  376 (611)
T ss_pred             CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH---------------HHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence            4567788999999999999999999999998876554               8889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      |....-++.+|.-|..+++++.|.++|..|+.+.|+++-+..+++.+.=..+.+.++. .+|++.....
T Consensus       377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~-~~f~~~l~~i  444 (611)
T KOG1173|consen  377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL-KYFQKALEVI  444 (611)
T ss_pred             cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH-HHHHHHHHHh
Confidence            9888899999999999999999999999999999999999999998765555555443 4666665433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00035  Score=67.41  Aligned_cols=120  Identities=17%  Similarity=0.063  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008540          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ  494 (562)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~  494 (562)
                      .+..+...+.-+...|.+...               |.-||.+|+.++++..|...|.+++++.|+|+..+.-.|.+++.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~  202 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY  202 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            455556666667777766655               77899999999999999999999999999999999999999988


Q ss_pred             cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540          495 MAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP  550 (562)
Q Consensus       495 l~~---~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~  550 (562)
                      ..+   ..+|...|++|+.+||+|..++..|+.......++.+. ...+..|.+.+...
T Consensus       203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A-~~~Wq~lL~~lp~~  260 (287)
T COG4235         203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA-AAAWQMLLDLLPAD  260 (287)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH-HHHHHHHHhcCCCC
Confidence            754   57999999999999999999999988776666665543 45777777766443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.81  E-value=0.00021  Score=71.15  Aligned_cols=112  Identities=13%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...-...|..+|++++|..|+..|..||+++..-....   ......+..+...+-..+..||+++++.+.|+.+..+.+
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            33445678899999999999999999999987643221   122233444444456689999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      .++|.+..-++|.|.|+..|.+|.+|-..+-.|.-
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887776653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00025  Score=70.56  Aligned_cols=132  Identities=17%  Similarity=0.154  Sum_probs=99.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHHH-HHHHHHHHHH------HhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEEK-KQAKALKVAC------NLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~~-~~~~~~~~~~------~~nla~~~~  459 (562)
                      ..-+.+.|..+|..|++++|+..|+++..+.|.....            .-+.. .....+....      ++--+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            4456788999999999999999999999888764321            00111 1111111111      222233455


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ..++|..|+.+..++++.+|.|+.+|.-.|.++..+++.++|+-.|+.|..|.|..-++..-|-.++...+
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence            68899999999999999999999999999999999999999999999999999998777766655544333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.0004  Score=62.59  Aligned_cols=93  Identities=22%  Similarity=0.252  Sum_probs=70.4

Q ss_pred             HHHHHhhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          454 NAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      -+.-+++.|+|.+|...|..||++.|..     .-.|.++|.|+++++.++.|+.++.+|++|+|.+.-+...-+.++.+
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            4666789999999999999999999865     33677999999999999999999999999999985444433445555


Q ss_pred             HHHHHHHHHHHHHhhcccc
Q 008540          529 MKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f~~~  547 (562)
                      +..++. .-.-|+++....
T Consensus       181 ~ek~ee-aleDyKki~E~d  198 (271)
T KOG4234|consen  181 MEKYEE-ALEDYKKILESD  198 (271)
T ss_pred             hhhHHH-HHHHHHHHHHhC
Confidence            544333 234566655443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=4.5e-05  Score=70.43  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=70.2

Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      .-+.+++.-+.|..|+..|.++|.++|+.+.+|-++|.||+++.+|+.+..++++|++++|+..-....++.+......+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34566778889999999999999999999999999999999999999999999999999999876666666665555444


Q ss_pred             HH
Q 008540          533 NK  534 (562)
Q Consensus       533 ~~  534 (562)
                      ..
T Consensus        95 ~e   96 (284)
T KOG4642|consen   95 DE   96 (284)
T ss_pred             cH
Confidence            43

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=2.9e-05  Score=49.81  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=29.9

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      .+|+++|.+|..+++|++|+.+|+++|+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            468999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.00025  Score=70.37  Aligned_cols=107  Identities=22%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-cCHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKV  474 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~a  474 (562)
                      ...+..+.+.++. +++.++..|+.+|++|+.+.......         .....++.++|.+|... +++++|+++|++|
T Consensus        72 ~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A  141 (282)
T PF14938_consen   72 FEAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKA  141 (282)
T ss_dssp             HHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444444 44457778888888888776544332         23456788999999998 9999999999999


Q ss_pred             HhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          475 LDLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       475 l~~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      +++-.  +.    ..++.+.|.++..+++|++|++.|+++....
T Consensus       142 ~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  142 AELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            98632  11    5677899999999999999999999998753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.68  E-value=0.00026  Score=75.36  Aligned_cols=87  Identities=17%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..+.+++.+|++|..+|++++|+.++++||+..|+.+..|+.+|++|-++|++.+|.++++.|..+|+.+.-+.....+.
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999986554444444


Q ss_pred             HHHHHHH
Q 008540          526 KEKMKEY  532 (562)
Q Consensus       526 ~~~~~~~  532 (562)
                      ..+-.+.
T Consensus       272 ~LRa~~~  278 (517)
T PF12569_consen  272 LLRAGRI  278 (517)
T ss_pred             HHHCCCH
Confidence            3333333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.68  E-value=0.0011  Score=54.63  Aligned_cols=107  Identities=16%  Similarity=0.188  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc----
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL----  477 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~----  477 (562)
                      ....|...++.|.|..|...|++|.++-...+..   +.-.-...-.-||--|+.++..+|+|++++....++|.+    
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~e---EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAE---EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TT---S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChH---hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            3456777788899999999999999986654422   222223445667889999999999999999999999864    


Q ss_pred             ---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          478 ---DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       478 ---~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                         +.+    ++.+-|++|.++..+|+.++|+..|+++-+.
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               332    4778899999999999999999999998653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00014  Score=75.68  Aligned_cols=81  Identities=17%  Similarity=0.330  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEe--cCCCccCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV--KPQYGFGEKGKSASGNEGA  244 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v--p~~~~~g~~~~~~~~~~~~  244 (562)
                      +..||+|+|+|.+.. ||..|...  +.+.+.+|.|.++|||+.+|.||+.|+...|.|  |.+  |....         
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~d--y~a~~---------  225 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPED--YHAEE---------  225 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccc--cchhH---------
Confidence            789999999999966 66666654  788999999999999999999999999999766  555  43322         


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008540          245 VPPNATLQIALELVSWKT  262 (562)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (562)
                       -.|....|.|.|.....
T Consensus       226 -LaGK~a~F~V~vkeVk~  242 (441)
T COG0544         226 -LAGKEATFKVKVKEVKK  242 (441)
T ss_pred             -hCCCceEEEEEEEEEee
Confidence             25667788888888654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.67  E-value=0.00021  Score=78.09  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=103.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHH------------HHHHHHHHhcHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQA------------KALKVACNLNNAAC  457 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~nla~~  457 (562)
                      +..+--.|..|-.--+..+|..+|.+|.++++.+...         ..++++..            .......+..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            3445556666665557788999999999887765322         11112211            11233344558899


Q ss_pred             HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      |++.+++..|+..++.+|+.+|++..+|.-+|.+|...|+|..|++.|.+|..++|.+.-.+...+.+...+.+++..
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987776666666666665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.66  E-value=8.2e-05  Score=50.92  Aligned_cols=42  Identities=29%  Similarity=0.241  Sum_probs=39.2

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      +++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            477899999999999999999999999999999999998863

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=2.1e-05  Score=72.82  Aligned_cols=79  Identities=28%  Similarity=0.495  Sum_probs=69.7

Q ss_pred             cCCCeEEEEEEcccCCCCC--CCCCEEEEEEEEEEc--CCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540           35 GNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      .-.||.++|+..|.| +-|  ..|..|.+||.....  .++++|+|+.-|+|+.+++|.---+|-||..|..|+++|.+.
T Consensus         8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            457899999999999 554  589999999998765  357999999989999999999888999999999999999988


Q ss_pred             EEec
Q 008540          111 FTIP  114 (562)
Q Consensus       111 v~ip  114 (562)
                      |.+.
T Consensus        87 F~~d   90 (329)
T KOG0545|consen   87 FWCD   90 (329)
T ss_pred             hhhh
Confidence            8763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.00017  Score=71.51  Aligned_cols=110  Identities=19%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHh--hcc--CHHHHHHHHHHHHhcCCCC
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLK--DYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--k~~--~~~~A~~~~~~al~~~p~~  481 (562)
                      -..+++.++++.|.+.++.+.++.++.                 ...++|.++.  ..|  .+++|...|++.....+.+
T Consensus       138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t  200 (290)
T PF04733_consen  138 VQILLKMNRPDLAEKELKNMQQIDEDS-----------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST  200 (290)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHCCSCCH-----------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcH-----------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence            346677788888887777665442211                 1233433333  233  5788888888877776777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      +..+..+|.|++.+|+|++|.+.++.|+..+|+++++..++..+...+.+.
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            888888888888888888888888888888888887777776665555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.63  E-value=0.00085  Score=59.88  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ......|+.+...|+|.+|..+|.+++.=+ -.+.               .+++.+|.+++..+++..|...++++.+.+
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---------------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---------------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---------------HHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            445678999999999999999999998532 1111               236789999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       479 p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      |.  .+..+.-.|++|..+|.+.+|+..|+.++...|+-. .+-.+.....++.
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qg  207 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQG  207 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc
Confidence            85  477888999999999999999999999999988753 4444444433333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.62  E-value=0.00052  Score=65.45  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT  524 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~l~~  524 (562)
                      .+|.|.-+++.|+|..|...+..-+...|++   +.|+|++|.+++.+|+|+.|...|..+.+-.|+++   +....|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6799999999999999999999999999986   68999999999999999999999999999888764   67777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Q 008540          525 LKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       525 l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      +..++++.+++ +.+|....+..
T Consensus       224 ~~~~l~~~d~A-~atl~qv~k~Y  245 (262)
T COG1729         224 SLGRLGNTDEA-CATLQQVIKRY  245 (262)
T ss_pred             HHHHhcCHHHH-HHHHHHHHHHC
Confidence            77777666543 45666665554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.62  E-value=0.0024  Score=59.95  Aligned_cols=114  Identities=15%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----------cCHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE  468 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~  468 (562)
                      ......|..+|+.++|..|+..|++.++..|..+..            ..+++.+|.|++++           +...+|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~  110 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI  110 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence            346788999999999999999999999999986642            23355666665554           4456899


Q ss_pred             HHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          469 KLCTKVLDLDSRNVKA-----------------LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       469 ~~~~~al~~~p~~~ka-----------------~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..++..+..-|++..+                 -+..|+-|++.|.|..|+.-++.+++..|+.......+..+
T Consensus       111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            9999999999987322                 23578999999999999999999999999987655544444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.61  E-value=0.00037  Score=61.56  Aligned_cols=85  Identities=12%  Similarity=-0.099  Sum_probs=74.2

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .+..|--++..|++++|...++-...++|.|.+.++.+|.|+..+++|++|+..|-.|..++++|+......+.|...++
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            45678888999999999999999999999999999999999999999999999999999999998876666777766665


Q ss_pred             HHHHH
Q 008540          531 EYNKK  535 (562)
Q Consensus       531 ~~~~~  535 (562)
                      +...+
T Consensus       120 ~~~~A  124 (165)
T PRK15331        120 KAAKA  124 (165)
T ss_pred             CHHHH
Confidence            54433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.0019  Score=60.57  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=59.3

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC------
Q 008540          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------  481 (562)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~------  481 (562)
                      ..+-.++...|..++++.-+.+|.....               .--.|..+--.++|++|+++|+..|+-||+|      
T Consensus        61 AAld~~~~~lAq~C~~~L~~~fp~S~RV---------------~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR  125 (289)
T KOG3060|consen   61 AALDTGRDDLAQKCINQLRDRFPGSKRV---------------GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR  125 (289)
T ss_pred             HHHHhcchHHHHHHHHHHHHhCCCChhH---------------HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence            4445677777777777766666544322               1122344444566666666666666666655      


Q ss_pred             ----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          482 ----------------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       482 ----------------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                                                  ..||..++..|..+++|++|.-+|+.++-+.|-|+.+...|+.+
T Consensus       126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~  197 (289)
T KOG3060|consen  126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV  197 (289)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence                                        44555566666666666666666666666666655555555544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.57  E-value=0.00047  Score=75.45  Aligned_cols=94  Identities=24%  Similarity=0.233  Sum_probs=78.3

Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN--  533 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~--  533 (562)
                      --++.++|++|++.|.++|+.||+|..|++.+|.++..++. .++|.+.|..|.+++|+|.-+++-|..+.++.....  
T Consensus        11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~l   90 (1238)
T KOG1127|consen   11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDL   90 (1238)
T ss_pred             HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhh
Confidence            34467899999999999999999999999999999999999 999999999999999999999999999988743322  


Q ss_pred             HHHHHHHHhhccccCCC
Q 008540          534 KKEAKFYGNMFAKMTEP  550 (562)
Q Consensus       534 ~~~~~~~~~~f~~~~~~  550 (562)
                      .+....|.+.+..+.++
T Consensus        91 d~~~~~yq~~~l~le~q  107 (1238)
T KOG1127|consen   91 DRAAKCYQRAVLILENQ  107 (1238)
T ss_pred             hHhHHHHHHHHHhhhhh
Confidence            23344666666655444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.54  E-value=0.00034  Score=78.14  Aligned_cols=109  Identities=14%  Similarity=0.070  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHH--HHHHH--HHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK--KQAKA--LKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~--~~~~~--~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ..+.-.|..+++++++..|...  .++...+.......-+.  ..+..  ....+++.+|.||-++|++++|...++++|
T Consensus        66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L  143 (906)
T PRK14720         66 SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV  143 (906)
T ss_pred             ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4466677788888888887777  66766665442211000  00000  112367889999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      +++|+|+.++.++|..|... ++++|++.+++|+..
T Consensus       144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            99999999999999999999 999999999999875

>PRK10941 hypothetical protein; Provisional

Probab=97.53  E-value=0.00093  Score=65.00  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      .+....+.|+=.+|++.++|+.|+.+++.+|.++|+++.-+.-||.+|.+++.+..|+.+|+..++..|+++.+...
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            34555677999999999999999999999999999999988889999999999999999999999999998765443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.52  E-value=0.00015  Score=46.36  Aligned_cols=33  Identities=39%  Similarity=0.564  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578889999999999999999999999988854

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.50  E-value=0.0009  Score=70.30  Aligned_cols=120  Identities=19%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      ..+.+-..|-.+...|+-++|...-..+++......               .||.-+|+.+..-++|++||.+|+.||.+
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---------------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---------------VCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccc---------------hhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            345555667777777777777777777776544333               23667777777777788888888888887


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      +|+|...|+-++....++++|+.....-.+.+++.|++...+.-++..+-....+
T Consensus       105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen  105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777766666655554444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.0031  Score=59.42  Aligned_cols=115  Identities=21%  Similarity=0.313  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC------------CChH------------HHHHHH--HHHHHHHhcHH
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS------------FGDE------------EKKQAK--ALKVACNLNNA  455 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~~------------~~~~~~--~~~~~~~~nla  455 (562)
                      .....+.+.-.|+|.-.+..|.+.++..+....            ..+.            +...+.  .....++.|.|
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            344566667777777777777777776532111            0110            011111  12456788999


Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      .+|+-.++|..|...+.+++..||.++.|-.++|.|++.+|+..+|++.++.++...|...
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999863

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.48  E-value=0.00019  Score=45.88  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      .+++++|.+++++|+|++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            357899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.47  E-value=0.00048  Score=59.47  Aligned_cols=68  Identities=19%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      +++.|...++.|+|.+|++.++.+....|-.   .+|.+.++.+|++.++|++|+..+++.++|+|+++.+
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            6788999999999999999999999988754   7899999999999999999999999999999999743

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.46  E-value=0.001  Score=68.32  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=94.8

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      .++++.|+..+++.....|.   .               ..-+|.+++..++-.+|++..+++|...|.+...+.-.|..
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v---------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---V---------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---H---------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56789999999886655432   1               34578888899999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      ++..++++.|+...++|..+.|++-..+..|..++..+.+.+.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999999999999999999998887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.004  Score=57.66  Aligned_cols=136  Identities=21%  Similarity=0.262  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          402 KKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       402 ~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      +.+.|..|-.. .++++|+.+|++|-++...+.+         .....+|++..|..-..+++|.+|+..|+++....-+
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34444444443 5789999999999888764332         2345566777777777899999999999999876554


Q ss_pred             C------HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          481 N------VK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       481 ~------~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      |      +| .++..|.||+...+.-.|...+++..+++|...+. ++...++..+...++.....|......+
T Consensus       187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds-REckflk~L~~aieE~d~e~fte~vkef  259 (288)
T KOG1586|consen  187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS-RECKFLKDLLDAIEEQDIEKFTEVVKEF  259 (288)
T ss_pred             chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            4      34 44567999999999999999999999999987643 3334444445555555555555444333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.44  E-value=0.0012  Score=55.28  Aligned_cols=62  Identities=31%  Similarity=0.246  Sum_probs=57.3

Q ss_pred             HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      .|.+....++.+.|++.+.++|.+.|.++.+|.+||++|.-.|+.++|+.++++|+++....
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            46677788999999999999999999999999999999999999999999999999996543

>PRK11906 transcriptional regulator; Provisional

Probab=97.43  E-value=0.00086  Score=68.74  Aligned_cols=88  Identities=15%  Similarity=0.082  Sum_probs=78.3

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008540          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI  493 (562)
Q Consensus       414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~  493 (562)
                      +-..|.+.-.+|+++.+.++..               +..+|.+....++++.|+..+++|+.++|+...++|.+|..+.
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a---------------~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKI---------------LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            4566777778888887766543               7788888888999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH
Q 008540          494 QMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       494 ~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ..|+.++|++.+++|++++|.-.
T Consensus       384 ~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        384 HNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999864

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.43  E-value=0.00068  Score=65.48  Aligned_cols=68  Identities=22%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      ++..|.-+++.|+|++|+..+++++...|...   ++.+++|.+|+++++|++|+..++++++++|+++.+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~  105 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI  105 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence            66788899999999999999999999999874   455999999999999999999999999999998744

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.43  E-value=0.0004  Score=68.85  Aligned_cols=97  Identities=22%  Similarity=0.273  Sum_probs=76.3

Q ss_pred             HHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540          408 TLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (562)
Q Consensus       408 ~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (562)
                      ..+..|  +++.|...|+...+..+.+               ..+++.+|.|++.+|+|++|...+.+++..+|+++.++
T Consensus       174 v~l~~g~e~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  174 VNLATGGEKYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            334444  6999999999865543321               23367899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 008540          486 YRRAQAYIQMADL-DLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       486 ~~~a~a~~~l~~~-~~A~~~~~~al~l~p~~~~~~  519 (562)
                      .+++.|...+|+. +.+.+.+.+....+|+++-+.
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            9999999999998 677788888888999986443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.0016  Score=65.45  Aligned_cols=137  Identities=12%  Similarity=-0.025  Sum_probs=105.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh----------HHHHHHHH---------HHHHHHhcHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKA---------LKVACNLNNAA  456 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------~~~~~~~~---------~~~~~~~nla~  456 (562)
                      ++.++.+.+.++.|-...+..+|++.|.++..+.|+++..-.          +.....+.         -.+...-.+|.
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a  634 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA  634 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence            455667778888888888888888888888888887653210          00111110         01222346788


Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      .|+...-|++||.+++++--+.|+..|-..-.|.|+.+.|+|..|.+.|+..-...|.+-++.+.|-++...+.-.
T Consensus       635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            8999999999999999999999999999999999999999999999999999999999999999888776555443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.34  E-value=0.0017  Score=54.85  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             HHHHHhcHHHHHhhccC---HHHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          447 KVACNLNNAACKLKLKD---YKQAEKLCTKVLD-LDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~---~~~A~~~~~~al~-~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      ...+.+|+|.|..+..+   -++.+..+...++ -.| ....++|.+|..|+++++|+.|+.+++..++.+|+|.++..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34457789999888764   5677888888886 444 346789999999999999999999999999999999988877


Q ss_pred             HHHHHHHHH
Q 008540          522 YKTLKEKMK  530 (562)
Q Consensus       522 l~~l~~~~~  530 (562)
                      -+.++.++.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            766655554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0011  Score=66.16  Aligned_cols=119  Identities=15%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ...+.-+|+.+.+.++.++|+-.|+.|+.+.|.               +..+|--+-.||+..+++.+|....+.+++.-
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhcchh---------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence            456677788888888888888888888877654               33447777788888888888888888888888


Q ss_pred             CCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRA-QAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       479 p~~~ka~~~~a-~a~~~-l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      |++.+++--.| .+++. -.--++|.+.++++|+++|....+...++.+.......
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~  454 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT  454 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc
Confidence            88888887775 33333 33457888888888888888865555555554444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.00097  Score=65.15  Aligned_cols=105  Identities=20%  Similarity=0.154  Sum_probs=79.1

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHH
Q 008540          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY  486 (562)
Q Consensus       407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~  486 (562)
                      ..++.+.+|..|+...+-.+....       |+.       ..+-..+|.|++++|+|++|+..|.-+.+.+..+.+.+.
T Consensus        30 edfls~rDytGAislLefk~~~~~-------EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v   95 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDR-------EEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV   95 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccch-------hhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence            356778899999888876663321       121       122457899999999999999999999998888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      ++|.|++.+|.|.+|...-.+|    |.++-..+++-.+..++
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence            9999999999999998776654    56665555554443333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.29  E-value=0.0008  Score=47.71  Aligned_cols=41  Identities=24%  Similarity=0.451  Sum_probs=34.3

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~  490 (562)
                      +++.+|..++++|+|..|..+|+.+|+++|+|.+|.--+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            47789999999999999999999999999999887665443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.28  E-value=0.00059  Score=70.60  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=90.5

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (562)
Q Consensus       410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a  489 (562)
                      -..|+-..|+++...|+...|......              ..|+|.+.++-+....|-..+.++|.+.-..+-.+|.+|
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g  683 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG  683 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence            347888999999999998877544332              569999999999999999999999999977788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       490 ~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      .+|+.+.+.+.|++.|+.|++++|++..+...|.++.
T Consensus       684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            9999999999999999999999999998888777653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.26  E-value=0.0026  Score=66.96  Aligned_cols=71  Identities=14%  Similarity=0.002  Sum_probs=40.3

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      |+-+|+++-.+++.+.|...|..-++..|+.+..|..+++.-.+.|+.-.|+..|.++..-+|.|...+.+
T Consensus       688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle  758 (913)
T KOG0495|consen  688 WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE  758 (913)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555444333

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.25  E-value=0.0018  Score=64.55  Aligned_cols=103  Identities=13%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+-+.||++.-.|+|..|+++|++++.+...-..         +..-+...+.+|..|.-+++|++||.+.++-|.+..
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999987653221         122334466899999999999999999999877532


Q ss_pred             ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          480 ------RNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       480 ------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                            ....|++.+|.+|..+|+.++|+.+.++.+++
T Consensus       307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                  34789999999999999999999999888765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.24  E-value=0.00072  Score=60.38  Aligned_cols=88  Identities=13%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      -|+.|++.++.....+|.+..+++|.|-+++.|.++          ++|+.-|+.||.++|+..++...++.+...+...
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999999999999654          6899999999999999999999988876655542


Q ss_pred             ---HHHHHHHHHhhccccCCC
Q 008540          533 ---NKKEAKFYGNMFAKMTEP  550 (562)
Q Consensus       533 ---~~~~~~~~~~~f~~~~~~  550 (562)
                         ....+..|++....+.+.
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHH
Confidence               222334555544444333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.24  E-value=0.00094  Score=65.46  Aligned_cols=137  Identities=20%  Similarity=0.266  Sum_probs=101.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC----------CC-----ChHH-------------HHHHHHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SF-----GDEE-------------KKQAKALKVA  449 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~~-----~~~~-------------~~~~~~~~~~  449 (562)
                      .+.+..+.|..+|.+.++.+|+..+.+.+..+.+..          ..     +.++             ..+....+..
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999988765421          00     0011             1112235667


Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL----  520 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~----  520 (562)
                      +|.|++..+-++.+|.+++.+|...+.+-...     ..++.-+|.||+.++.|++|++.|++|+++.-++.+...    
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            79999999999999999999999999874332     468888999999999999999999999998665544333    


Q ss_pred             --HHHHHHHHHHHHHH
Q 008540          521 --EYKTLKEKMKEYNK  534 (562)
Q Consensus       521 --~l~~l~~~~~~~~~  534 (562)
                        .|..+..+++.+++
T Consensus       165 cv~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhhHHHHHHHHHhhhH
Confidence              34555555555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.014  Score=57.33  Aligned_cols=71  Identities=20%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                      +.+|.+++-.-.|++||+.|.++|.-+|+..-.-..+|.||+++.-|+-+.+.+.--|..-|+.+-+..+.
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk  225 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK  225 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence            45677777788899999999999999998888888999999999999999999999999999987555444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.13  E-value=0.005  Score=64.92  Aligned_cols=131  Identities=18%  Similarity=0.115  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHHHHHH---------HHhcHHHHHhhcc
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLK  462 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~~~~~~~~---------~~~nla~~~~k~~  462 (562)
                      .+..-+..++..|+...|.....+|++..|++...         ...+.+.++.+..+         +|+.-+....-++
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence            45666778888999999999999999988874322         11233444444433         3344455555688


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      +.++|++.|+++|+.-|+..|.|..+|+++.++++.+.|++.|...++.-|...-.+-.|.++.++...
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999877753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.12  E-value=0.0016  Score=59.65  Aligned_cols=73  Identities=14%  Similarity=0.052  Sum_probs=67.9

Q ss_pred             HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      .++.+++.+|..|-.+|-|.-|.-++.++|.+.|.-+.++..+|.-+...|+|+.|.+.|..++++||.+.-+
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya  135 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  135 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH
Confidence            3566688999999999999999999999999999999999999999999999999999999999999998543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0054  Score=64.36  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=89.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      -..+.+.+..+|+..+|..|++.|...++.++.+...         ....+...|++.||+++.+.+.|.+++.+|-+.+
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            3457788999999999999999999999998865422         1236667899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      |.++-..+..-++...-+.-++|+..+.+....
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            999988888888999999999999988776644

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.00  E-value=0.0051  Score=65.70  Aligned_cols=101  Identities=18%  Similarity=0.139  Sum_probs=81.0

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      +++..+.++...|++++|+.++.+.-..-.+....+-.+|.+|+++|++++|...|+..++.+|+|......|..+....
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence            35567788899999999999999988888888999999999999999999999999999999999998888888776222


Q ss_pred             H----HHHHHHHHHHHhhccccCCC
Q 008540          530 K----EYNKKEAKFYGNMFAKMTEP  550 (562)
Q Consensus       530 ~----~~~~~~~~~~~~~f~~~~~~  550 (562)
                      .    ...+....+|..+-....++
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~yp~s  110 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKYPRS  110 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhCccc
Confidence            2    23344455666665555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.98  E-value=0.0014  Score=41.39  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      .|+|++|.||..+|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367888888888888888888888888888764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.92  E-value=0.024  Score=56.63  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=99.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      .-|...+......|..-+-.|+|.+|.+...++-+.-+.               ...+|.--|.+-..+|+++.|-.+..
T Consensus        78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL~  142 (400)
T COG3071          78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYLA  142 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            356777888888898888899999999998886654321               22335555677778899999999999


Q ss_pred             HHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          473 KVLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       473 ~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      ++-+..+ ++.-.+..+++.+...+++..|+..+.++++..|.++.+.....++..+.+.+..
T Consensus       143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            9888733 4567788889999999999999999999999999998888888877777766553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.0023  Score=61.22  Aligned_cols=93  Identities=22%  Similarity=0.350  Sum_probs=77.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc-
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-  477 (562)
                      |....+.|-.+|+.|+|+.|++.|+.|++.-...+-.               -+|+|+|+++.++|..|+++.++.++. 
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll---------------AYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL---------------AYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCchh---------------HHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            5567789999999999999999999999886654433               679999999999999999999998764 


Q ss_pred             ---CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540          478 ---DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK  506 (562)
Q Consensus       478 ---~p~----------------~---------~ka~~~~a~a~~~l~~~~~A~~~~~  506 (562)
                         .|.                |         +.|+.-++-++++.++++.|.+.+.
T Consensus       209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence               222                1         3467778899999999999988773

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.87  E-value=0.0063  Score=59.85  Aligned_cols=101  Identities=22%  Similarity=0.268  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-  480 (562)
                      +...|+.+...+.|++|++.|+.|+++.....+.         .+-..++..++..|-+++++++|+-+..+|+++-.. 
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~  195 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY  195 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence            3447888999999999999999999987765433         123345778899999999999999999888876321 


Q ss_pred             ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          481 ---------NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       481 ---------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                               ..-++|+++.+|..+|++-.|.++++.|.++
T Consensus       196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                     1347888999999999999999999998776

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.80  E-value=0.0015  Score=41.61  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      .+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            358899999999999999999999999999864

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.017  Score=54.78  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-----------CCChHHHHHHHHH-HHHHHhcHHHHHhhc----cCHH
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGDEEKKQAKAL-KVACNLNNAACKLKL----KDYK  465 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~nla~~~~k~----~~~~  465 (562)
                      +..-|..+.+.++|+.|++...+...+--..-           .....+.+..... --..++.+|.++.++    ..++
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence            33456778888999999887765332211000           0000000000000 011233456655553    3689


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       466 ~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      +|...|++.-+..|.++..+.-.|.|++.+++|++|...++.||.-++++++...++-.+.....+-
T Consensus       191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999877888899999999999999999999999999999999999888887776555543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0071  Score=58.92  Aligned_cols=68  Identities=24%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      |-.-|.-|++.++|..|+..|.+.|...-.    |.-.|.+||-|.+.+|+|..|+.++.+|+.++|.+.-+
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka  155 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA  155 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence            445688899999999999999999986533    46678899999999999999999999999999999533

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.74  E-value=0.0012  Score=42.81  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          484 ALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      +|.++|.+|..+|+|++|++.|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566677777777777777777775443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.72  E-value=0.054  Score=51.09  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=74.3

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC-------HHHHHHHHHHHHhcCC-
Q 008540          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLDS-  479 (562)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-------~~~A~~~~~~al~~~p-  479 (562)
                      .+-....+++|+..|.-|+-........        ...++.+++.+|.+|..+++       +..|+..|.++++... 
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~  157 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF  157 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            4555678999999999999765432211        12456668888999988888       4556666666665442 


Q ss_pred             -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          480 -----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       480 -----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                           +....+|.+|..+.++|++++|+.+|.+++..--.+
T Consensus       158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence                 236899999999999999999999999999754333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.72  E-value=0.00081  Score=65.63  Aligned_cols=63  Identities=24%  Similarity=0.341  Sum_probs=57.6

Q ss_pred             HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540          455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      |.-.+..|.++.|+++|..++.++|.+...|-.||.++++|++...|+.+|..|+.++|+...
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~  183 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK  183 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence            344556788999999999999999999999999999999999999999999999999998754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.67  E-value=0.0085  Score=56.82  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      ..+++-|+..++.|+|.+|+..++.+....|.+   .++++-++.++++-++|++|+..+++-+.+.|+++++
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            337799999999999999999999999988754   7999999999999999999999999999999998753

>smart00028 TPR Tetratricopeptide repeats

Probab=96.67  E-value=0.0028  Score=38.91  Aligned_cols=32  Identities=44%  Similarity=0.657  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      .+++++|.+|..++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45677777777777777777777777777665

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.66  E-value=0.0021  Score=65.72  Aligned_cols=64  Identities=31%  Similarity=0.335  Sum_probs=60.5

Q ss_pred             hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      -+-|...++-+.|+.|+..|.+||+++|+++-.+-+|+.+|++.++|..|+.++.+|++++|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            3667788899999999999999999999999999999999999999999999999999999986

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.60  E-value=0.015  Score=61.83  Aligned_cols=101  Identities=19%  Similarity=0.200  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      --+..+|..+..+|+.+.|+..|++|+..-           ...+++...+++.+|.|++-+.+|++|..++.+.++.+ 
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-  335 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-  335 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence            346778888999999999999999988421           23445667789999999999999999999999999853 


Q ss_pred             CCHH--HHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 008540          480 RNVK--ALYRRAQAYIQMADL-------DLAEFDIKKALEID  512 (562)
Q Consensus       480 ~~~k--a~~~~a~a~~~l~~~-------~~A~~~~~~al~l~  512 (562)
                      ++.+  ..|-.|.||..+++.       ++|.+.|+++-.+-
T Consensus       336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            3445  445789999999999       88888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.57  E-value=0.043  Score=49.78  Aligned_cols=102  Identities=20%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      ...+.+..++..++++.|....+.++..-.+            ..++..+-.++|.+++.++.+++|+..++..-.-.-.
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~  158 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA  158 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence            4567888999999999999999998854221            1334445678999999999999999987765442211


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                       ....-.+|.+++..|+-++|+..|++|+..++++
T Consensus       159 -~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         159 -AIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             -HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence             2235578999999999999999999999998555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.48  E-value=0.001  Score=42.53  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (562)
Q Consensus       421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (562)
                      +|++||++.|++...               |+|+|.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhcC
Confidence            488999999987765               9999999999999999863

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.022  Score=59.58  Aligned_cols=114  Identities=21%  Similarity=0.170  Sum_probs=81.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHH----HHHH-----HHHHHHhcHHHHHhhc
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKK----QAKA-----LKVACNLNNAACKLKL  461 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~----~~~~-----~~~~~~~nla~~~~k~  461 (562)
                      ..+...-|.+.+.++|++|+....+.+...|++...         ..+..+    .++.     ......+..|-|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            345555677778889999999988888887654322         001111    1111     0111125778999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      +..++|+.+++   -+++...+.+.-+|+.++++++|++|...|+...+.+-++.
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            99999999988   55667788999999999999999999999999887765553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.039  Score=56.82  Aligned_cols=106  Identities=19%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008540          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA  496 (562)
Q Consensus       417 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~  496 (562)
                      +-...|+.|+...+.+..               ++++...-..+.+.+.+.-..|.++|..+|+|+..|...|.-.+..+
T Consensus        89 rIv~lyr~at~rf~~D~~---------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n  153 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVK---------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN  153 (568)
T ss_pred             HHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence            345667777776665443               26666655566677999999999999999999999999999888887


Q ss_pred             C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          497 D-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       497 ~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                      . .+.|++.|.++|..+|+++.++.++=++..........++
T Consensus       154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr  195 (568)
T KOG2396|consen  154 LNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRR  195 (568)
T ss_pred             cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            7 9999999999999999999999888776555554444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.14  Score=49.58  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH---------
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC---------  471 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~---------  471 (562)
                      ....++..+...+++..|...|..++...+.....               ..-+|.||+..|+.+.|...+         
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~~  200 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQD  200 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence            35677889999999999999999999998876433               445666666666664443333         


Q ss_pred             -------------------------HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 008540          472 -------------------------TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKT  524 (562)
Q Consensus       472 -------------------------~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~  524 (562)
                                               .+.+..+|++..+-+.+|..|...|+.++|.+.|-..++.|-.  +..+++.|-.
T Consensus       201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle  280 (304)
T COG3118         201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE  280 (304)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence                                     2333457999999999999999999999999999888876533  4456666655


Q ss_pred             HHHHHH
Q 008540          525 LKEKMK  530 (562)
Q Consensus       525 l~~~~~  530 (562)
                      +-..+.
T Consensus       281 ~f~~~g  286 (304)
T COG3118         281 LFEAFG  286 (304)
T ss_pred             HHHhcC
Confidence            544444

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.30  E-value=0.014  Score=56.13  Aligned_cols=74  Identities=23%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~  524 (562)
                      -++.|.-..+.|+.++|...+..||.++|.|+.++.+.|.....-++.-+|-.+|-+||.++|.|.++..+-.+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34667777789999999999999999999999999999999999999999999999999999999887665443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.23  E-value=0.14  Score=47.26  Aligned_cols=57  Identities=32%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             HhhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      +...+++..|+..+.+++...+. ...++..++.++...++++.|+..+.+++...|.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            44455555555555555555555 4555555555555555555555555555555554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.068  Score=49.77  Aligned_cols=114  Identities=19%  Similarity=0.115  Sum_probs=83.6

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-cCHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTK  473 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~  473 (562)
                      +-+.+..+.+.+|+ |++.+..+|+++..+|+++.......         .+..+-+..+|-.|-.- .++++||.+|+.
T Consensus        70 khDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~  139 (288)
T KOG1586|consen   70 KHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQ  139 (288)
T ss_pred             chhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence            33455566665554 56678999999999999988765433         12233355667766554 899999999999


Q ss_pred             HHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          474 VLDLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       474 al~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      +-+.-.      .--|++...|.--..+++|.+|+..|+++....-+|.-.
T Consensus       140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            976532      225788889998999999999999999998877776543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.20  E-value=0.0058  Score=39.61  Aligned_cols=28  Identities=21%  Similarity=0.162  Sum_probs=24.1

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      ++.|+|.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3789999999999999999999996654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.12  E-value=0.064  Score=58.90  Aligned_cols=115  Identities=17%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHH
Q 008540          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY  486 (562)
Q Consensus       407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~  486 (562)
                      -.....++|.+|+....+.++..|+....               ..--|..+.++|++++|....+..-..-+++-..+-
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a---------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq   81 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYA---------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ   81 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHH---------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence            34566788999999999999888764422               334688899999999999555555455567778888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                      -+-.||..++++++|...|+++...+|+ .+....+=.+..+...+.++++
T Consensus        82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999 6666666556666666555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.11  E-value=0.037  Score=44.32  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~~~  533 (562)
                      .+..+++.++.+|++..+.|.+|.++...|++++|++.|-.+++.+++.  ..++..+-.+-..+....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4567888999999999999999999999999999999999999998765  567676666655555433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.10  E-value=0.0068  Score=38.06  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            47799999999999999999999999998874

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.096  Score=53.60  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHH---------------------------------H
Q 008540          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA---------------------------------C  457 (562)
Q Consensus       411 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~---------------------------------~  457 (562)
                      ...+.+.+...|+.+|+++|...-.           ..++++-.|.                                 .
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFt-----------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel  446 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFT-----------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL  446 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccch-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            4678999999999999998864321           1112222222                                 2


Q ss_pred             HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      -+++++++.|...|.+-|+..|.|..+|..-|..-..||+.+.|+..|+-|+..
T Consensus       447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            345666777777777777777777777777676666777777777777666643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.03  E-value=0.25  Score=48.77  Aligned_cols=122  Identities=16%  Similarity=0.150  Sum_probs=90.7

Q ss_pred             cCChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHH
Q 008540          389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (562)
Q Consensus       389 ~~~~~e~~~~a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (562)
                      .++++.....+..+.+-|..+++++ +|..|....++|.++++.... .........+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4566777788999999999999999 999999999999999855211 11122345677888899999999998887654


Q ss_pred             HHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          468 EKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       468 ~~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      .+ |..+++    -.|+.+-.++-.=.++.+.++.+.+.+.+.+++.--
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            44 444433    346666666566666666788888988888888653

It is also involved in sporulation [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.98  E-value=0.023  Score=58.10  Aligned_cols=79  Identities=20%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHh-c--------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD-L--------DS---------RNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~-~--------~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      ....++|++.++++++.|..++.++.+||+ .        .|         .....+|+.|..|+..|+.-.|.++|.+|
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            334468999999999999999999999995 1        11         23568999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q 008540          509 LEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       509 l~l~p~~~~~~~~l~~l  525 (562)
                      ....-.|+.+|..++.|
T Consensus       362 v~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HHHHhcCcHHHHHHHHH
Confidence            99988998888887765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.96  E-value=0.075  Score=49.10  Aligned_cols=65  Identities=37%  Similarity=0.489  Sum_probs=60.3

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      .+.+++.++...+.+..|+..+..++...|.....++.++..+...+.++.|...+.+++..+|.
T Consensus       204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            47788999999999999999999999999998888999999999888899999999999999997

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.92  E-value=0.085  Score=56.73  Aligned_cols=94  Identities=13%  Similarity=0.038  Sum_probs=70.6

Q ss_pred             HHhcHHHHHhhc--------cCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          450 CNLNNAACKLKL--------KDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       450 ~~~nla~~~~k~--------~~~~~A~~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      +|.-+|.||...        .++..+.....+++.+  +|..+.+|.-+|..+...|++++|...|++|+.++| +..+.
T Consensus       378 a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~  456 (517)
T PRK10153        378 AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNY  456 (517)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHH
Confidence            344455555443        2345666667776664  778889999999999999999999999999999999 46788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          520 LEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       520 ~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ..++++.....+.+++.. .|++.+.
T Consensus       457 ~~lG~~~~~~G~~~eA~~-~~~~A~~  481 (517)
T PRK10153        457 VLLGKVYELKGDNRLAAD-AYSTAFN  481 (517)
T ss_pred             HHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence            888988888877766543 5555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.92  E-value=0.15  Score=59.36  Aligned_cols=101  Identities=21%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC---
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---  479 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p---  479 (562)
                      ...|..++..|+++.|...|.+++.........         .....++.++|.+++.+|++++|...+.+++.+..   
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~  565 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH  565 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence            344555555566666666666655544322111         11233567889999999999999999999887521   


Q ss_pred             -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          480 -----RNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       480 -----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                           ...-.+..+|.++...|++++|...+.+++.+.
T Consensus       566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence                 122345677889999999999999999988763

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.081  Score=55.55  Aligned_cols=69  Identities=14%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (562)
                      .+++-++|+.+..++|+..++ .++-++                 ..+..-+|+.++++++|++|+..|+..++.+.+..
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~-----------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLDRLD-----------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-cccccc-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            588889999999999998887 222111                 11244579999999999999999999998877665


Q ss_pred             HHHHHHH
Q 008540          483 KALYRRA  489 (562)
Q Consensus       483 ka~~~~a  489 (562)
                      ....+..
T Consensus       145 d~~~r~n  151 (652)
T KOG2376|consen  145 DEERRAN  151 (652)
T ss_pred             HHHHHHH
Confidence            5554433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.079  Score=50.91  Aligned_cols=74  Identities=20%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      ....+..|+=..++..++|+.|..+.++.+.++|.++.-+--+|.+|.+++.+.-|++++...++.-|+++.+.
T Consensus       179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            34445667888899999999999999999999999999999999999999999999999999999999987543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=0.18  Score=48.02  Aligned_cols=91  Identities=19%  Similarity=0.158  Sum_probs=71.7

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (562)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~  492 (562)
                      .+++.|.-.|+..-+..+.++.               +.+-+|.|++.+++|++|....+.+|..+++.+..+-++-.+-
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~---------------llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPL---------------LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChH---------------HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            4577888888776654443332               3678999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHH-HHHHHhCCCCHHH
Q 008540          493 IQMADLDLAEFDI-KKALEIDPDNRDV  518 (562)
Q Consensus       493 ~~l~~~~~A~~~~-~~al~l~p~~~~~  518 (562)
                      ..+|.-.++.+.+ .+....+|+++-+
T Consensus       252 ~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            9999887766655 4444557777533

>smart00028 TPR Tetratricopeptide repeats

Probab=95.79  E-value=0.015  Score=35.47  Aligned_cols=32  Identities=38%  Similarity=0.471  Sum_probs=29.3

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +++++|.++..+++++.|+..++++++.+|++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            47899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.74  E-value=0.016  Score=53.68  Aligned_cols=60  Identities=20%  Similarity=0.312  Sum_probs=56.5

Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ...+.++.+.|.+.|+++|++-|.+...|||+|....+.|+++.|.+.|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            445778999999999999999999999999999999999999999999999999999875

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.12  Score=48.56  Aligned_cols=128  Identities=15%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH----HhcC--C
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD--S  479 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~~~--p  479 (562)
                      +-...+..+.+.|+..|++++.+...+...         .+...++...+..+.+++.|.+|-..+.+-    ++.+  +
T Consensus       117 Aak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~  187 (308)
T KOG1585|consen  117 AAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN  187 (308)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence            333444556777777888777776654322         223334556677888888888877666553    3333  3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      .-.|++.-.-..|+.+.+|..|..+++...++..-+  -...-+.+...+..+++.+...++++.
T Consensus       188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~kvl  250 (308)
T KOG1585|consen  188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKKVL  250 (308)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            445677777777888889999999999877664322  122233344555555555555555554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.051  Score=52.32  Aligned_cols=121  Identities=12%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH---------
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC---------  471 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~---------  471 (562)
                      .+--.|-+||...+|..|..+|++.-.+.|.....               .+..|+..++.+.|..|+...         
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY---------------rlY~AQSLY~A~i~ADALrV~~~~~D~~~L  110 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY---------------RLYQAQSLYKACIYADALRVAFLLLDNPAL  110 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH---------------HHHHHHHHHHhcccHHHHHHHHHhcCCHHH
Confidence            35568899999999999999999988877753221               112233333333333333222         


Q ss_pred             ---------------------HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          472 ---------------------TKVLDLDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       472 ---------------------~~al~~~p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                                           +..++.-|  +......+.|..+++-|+|+.|.+-|+.|++...-++-+.-.++.+.-+
T Consensus       111 ~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~  190 (459)
T KOG4340|consen  111 HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS  190 (459)
T ss_pred             HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh
Confidence                                 12222223  3456677888888888888888888888888887777777777766555


Q ss_pred             HHHHHHHH
Q 008540          529 MKEYNKKE  536 (562)
Q Consensus       529 ~~~~~~~~  536 (562)
                      .+++..+-
T Consensus       191 ~~qyasAL  198 (459)
T KOG4340|consen  191 SRQYASAL  198 (459)
T ss_pred             hhhHHHHH
Confidence            55554433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.61  E-value=0.11  Score=58.64  Aligned_cols=63  Identities=6%  Similarity=-0.080  Sum_probs=55.5

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      .+|..+..++.+.|+++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            347777778889999999999999999999999889999999999999999999999887644

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.57  E-value=0.14  Score=57.86  Aligned_cols=143  Identities=8%  Similarity=0.007  Sum_probs=97.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh--hhcC------------CCChHHHHHHHHHH--------HHHHhcHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYDT------------SFGDEEKKQAKALK--------VACNLNNAAC  457 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~--~~~~------------~~~~~~~~~~~~~~--------~~~~~nla~~  457 (562)
                      ..+......|.+.|++++|++.|++.++.-  |+..            ...++-....+.+.        ...|..+..+
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            456677778888888888888888876531  1100            00011111122221        1246778888


Q ss_pred             HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                      +.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...++++++++|++......+..+..+..+.+++. 
T Consensus       472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~-  548 (697)
T PLN03081        472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA-  548 (697)
T ss_pred             HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH-
Confidence            999999999999887642 334 45678888999999999999999999999999998777777777777776665544 


Q ss_pred             HHHHhhcc
Q 008540          538 KFYGNMFA  545 (562)
Q Consensus       538 ~~~~~~f~  545 (562)
                      ++++.|-.
T Consensus       549 ~v~~~m~~  556 (697)
T PLN03081        549 KVVETLKR  556 (697)
T ss_pred             HHHHHHHH
Confidence            35555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.50  E-value=0.11  Score=51.31  Aligned_cols=128  Identities=14%  Similarity=0.089  Sum_probs=85.9

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHhcCCCC
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ....+..-+.+..+.|...|.+|++......               .+|...|...++ .++.+.|...++.+++.-|.+
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~---------------~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~   69 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTY---------------HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T---------------HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCCCH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence            3344555556668899999999974222111               236666777556 567777999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      ...|..-..-+..+++.+.|+..|++++..-|...   .++..+-....+..... .-.++++++...
T Consensus        70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~  136 (280)
T PF05843_consen   70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH
Confidence            99999999999999999999999999998866655   34444444444444332 222344444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.49  E-value=0.31  Score=49.01  Aligned_cols=118  Identities=16%  Similarity=0.077  Sum_probs=85.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ..-....+..+...|+++.|.+.-.++++..-+..                  +.+=.-.++.+++..=++..++.+...
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~------------------L~~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR------------------LCRLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh------------------HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            44445566677888999999999998887532110                  111223457788888888889999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      |+++-.++.+|+.|++.+.|.+|...|+.|+++.|+.. ....++.+...+.+-..+
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEA  380 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHH
Confidence            99998899999999999999999999999998888754 345555555555544433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.39  E-value=0.082  Score=55.37  Aligned_cols=131  Identities=11%  Similarity=0.089  Sum_probs=98.4

Q ss_pred             hhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          400 GKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       400 ~~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      -.+...+..|++ +|+..+|+.+|..|+-+.+....             -..++.+|.+..+.|.-.+|--.+..|+...
T Consensus       213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCC
Confidence            345566666666 78999999999999988765332             2236789999999999999988888888877


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV---KLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      |.-..-+|-++.+|.++++|.....+|..|++.+|.....   ++..-.|.+++.+..+++.+..+.|
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~  347 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT  347 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666669999999999999999999999999999876432   2233335555555555554444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.35  E-value=0.28  Score=44.83  Aligned_cols=101  Identities=19%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.-..+.+.|+.|++.|+++.|++.|.++.+.+...            ..++.+++++-.+.+..++|..+..+..++-.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            334568899999999999999999999988764321            23555677888888899999999999999866


Q ss_pred             cCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540          477 LDS--RNV----KALYRRAQAYIQMADLDLAEFDIKKAL  509 (562)
Q Consensus       477 ~~p--~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (562)
                      +-.  .++    +.....|.+++..++|..|-..|-.+.
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            432  222    233345777888899999988886654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.31  E-value=0.31  Score=50.33  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=79.4

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--C-----HHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--D-----YKQA  467 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~-----~~~A  467 (562)
                      .+.......+.|..++..|+|.+|+..|+..|..++-....+.++..+++++...|.-.+-.+.+.+.  .     .+..
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            34444556678999999999999999999999999887766777888888887776655544433322  2     2233


Q ss_pred             HHHHHHHH-----hcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540          468 EKLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       468 ~~~~~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      .+.|+-+.     ++.|.|...-+|.|+ ..+++++|-.|....++.|++.|..+.
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence            34444442     334444333334443 456789999999999999999998753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.29  E-value=0.15  Score=49.07  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      .+.+++.+.+..+..+++.-.|..|++.+.+.+|++.|++++.++|-+...+.-+-..|..+|+--.|++.|++.
T Consensus       265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344567778888888888888999999999999999999999999999999999999999999987787777664

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.26  E-value=0.2  Score=51.89  Aligned_cols=127  Identities=20%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             CChHHHHHHHhhhHHHH----HH--HHH---cCcHHHHHHHHHHHHHHhhhcCCCCh------H--HHHHHH--HHHHHH
Q 008540          390 MNTEEKIEAAGKKKEQG----NT--LFK---AGKYARASKRYEKAVKYIEYDTSFGD------E--EKKQAK--ALKVAC  450 (562)
Q Consensus       390 ~~~~e~~~~a~~~~~~G----~~--~~~---~g~~~~A~~~y~~al~~~~~~~~~~~------~--~~~~~~--~~~~~~  450 (562)
                      -+.+.+++.|.+-.+.-    ..  ++.   .....+|.+.|++|++.-+.......      .  +....+  ....-+
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~  261 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA  261 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence            46666776665433322    22  222   23478889999999987654322110      0  111111  123334


Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNR  516 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~p~~~  516 (562)
                      ...+|.|..++|+.++|++.++..++..|.  +...++++..|++.++.|.++...+.+--++ -|...
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA  330 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA  330 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence            567899999999999999999999987774  6789999999999999999999999886433 24443

The molecular function of this protein is uncertain.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.24  E-value=0.33  Score=43.77  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=66.4

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKE  527 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~  527 (562)
                      .+.+|.....+|++.+|..+|.+++. +--++...+.-++++.+.++++-.|...+++..+.+|..  ++-...+++...
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            56789999999999999999999987 345778899999999999999999999999999988763  344455555544


Q ss_pred             HHHHH
Q 008540          528 KMKEY  532 (562)
Q Consensus       528 ~~~~~  532 (562)
                      ...+.
T Consensus       172 a~g~~  176 (251)
T COG4700         172 AQGKY  176 (251)
T ss_pred             hcCCc
Confidence            44433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.09  E-value=0.23  Score=40.88  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHH----HhhccCHHHHHHHHHHHHhcCCC
Q 008540          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC----KLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      ++..+|++|++-+|++..+..+..-..+...+     .+..+.-.++..+|..    -.|..-.-.|++.++++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            56789999999999999999998766544321     2222222333333321    12222355678888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      ....+|.+|.-+-....|++|..-.+++|.+
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            8888888888777777788888888888765

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.07  E-value=0.041  Score=53.09  Aligned_cols=84  Identities=19%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      +...|..-...+....+.|+.++|...|..|+.+.|..+..               +..+|...-..++.-+|-++|-+|
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~A  176 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKA  176 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhee
Confidence            33444444556667788999999999999999999987654               666777776678888999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHH
Q 008540          475 LDLDSRNVKALYRRAQAYI  493 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~  493 (562)
                      |.++|.|.+|+.+|++..-
T Consensus       177 LtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  177 LTISPGNSEALVNRARTTP  195 (472)
T ss_pred             eeeCCCchHHHhhhhccch
Confidence            9999999999999886543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=0.33  Score=51.54  Aligned_cols=74  Identities=19%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++-|-|.-+++.++|..+++.|...+..-|.      ..|....++.||+.+.+++.|.+.+..|-+.+|.+.-.....-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            3447888999999999999999999987654      3788889999999999999999999999999999965544443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.03  E-value=0.16  Score=59.12  Aligned_cols=100  Identities=10%  Similarity=0.058  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-  480 (562)
                      ....|..++..|++..|...+.+++...+...          ......+++++|.++...|++++|+..+.+++..... 
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~  524 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH  524 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            34467888899999999999999998644211          1113334678999999999999999999999875321 


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          481 -----NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       481 -----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                           -..++.++|.++...|+++.|...+.+++.+
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 1357788999999999999999999999886

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.03  E-value=0.49  Score=48.65  Aligned_cols=126  Identities=15%  Similarity=0.173  Sum_probs=98.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+..-|.--..+++++.|...|++||.....+               +.+++..|-+-+|.++...|....++|+.+-|.
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPR  139 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR  139 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence            34555666667889999999999999876443               344888999999999999999999999999998


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      --+.||.--..-..||+..-|+..|++-++..|+.. ++.-+-+...+.++.+. .+..|.+.
T Consensus       140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRykeier-aR~IYerf  200 (677)
T KOG1915|consen  140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYKEIER-ARSIYERF  200 (677)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhHHHH-HHHHHHHH
Confidence            889999988888899999999999999999999863 55555555555554432 34455543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.99  E-value=0.21  Score=51.85  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCC----ChHHH---HHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          408 TLFKAGKYARASKRYEKAVKYIEYDTSF----GDEEK---KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~----~~~~~---~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      ...+..+.+.-++.-.+|+++.|++...    .+|+.   .+...+..++ .+.|...++.....+.....-..+...+.
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqA-vkAgE~~lg~s~~~~~~g~~~e~~~~Rdt  255 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQA-VKAGEASLGKSQFLQHHGHFWEAWHRRDT  255 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHH-HHHHHHhhchhhhhhcccchhhhhhcccc
Confidence            4566889999999999999999876543    11110   1111111110 01111111111111111111111111122


Q ss_pred             C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 008540          481 N--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       481 ~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      |  +.+-+|+|.|..++|+.++|++.++..++..|.  +..++..|-.+...++++.+.+
T Consensus       256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence            2  456678999999999999999999999998876  3467777666655555554433

The molecular function of this protein is uncertain.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.98  E-value=0.15  Score=44.92  Aligned_cols=91  Identities=20%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             HHHHhhccCHHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          455 AACKLKLKDYKQAEKLCTKVLDLDSR----------------------NVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p~----------------------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      |......++...++..+.+++.+...                      ...++.+++.++...|++++|+..+++++.++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            44445567788888888888876421                      13466688999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          513 PDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       513 p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |.+..+...+-.+....+...... +.|.++-..
T Consensus        93 P~~E~~~~~lm~~~~~~g~~~~A~-~~Y~~~~~~  125 (146)
T PF03704_consen   93 PYDEEAYRLLMRALAAQGRRAEAL-RVYERYRRR  125 (146)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHH-HHHHHHHHH
Confidence            999988888888877777665443 355444333

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.89  E-value=0.23  Score=41.37  Aligned_cols=114  Identities=17%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH----Hh
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD  476 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~  476 (562)
                      ++...|+..++.+++-.|+-+|++|+.+........+.+.+.+-.+.+....|+|..+..+|+-+-.+++++-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999998776544455566666777777889999999999999999888655    55


Q ss_pred             cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540          477 LDSRNV----KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (562)
Q Consensus       477 ~~p~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~  524 (562)
                      +-|.-+    .++.      -.+|--..|+-+|   ++-.|+ +.+.+.+..
T Consensus        83 LiPQCp~~~C~afi------~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~  124 (140)
T PF10952_consen   83 LIPQCPNTECEAFI------DSLGCCKKALLDF---MKRHPN-PEIARLVQH  124 (140)
T ss_pred             hccCCCCcchHHHH------HhhhccHHHHHHH---HHhCCC-HHHHHHHHh
Confidence            555432    2322      1234444555444   445665 455555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.82  E-value=0.48  Score=55.49  Aligned_cols=58  Identities=7%  Similarity=-0.151  Sum_probs=26.2

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      |+.+..+|.+.+++++|++.+.+..+.. +.+...|..+..+|.+.|++++|++.|++.
T Consensus       652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3334444444444444444444444332 123344444455555555555555555444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.79  E-value=0.24  Score=42.16  Aligned_cols=43  Identities=21%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      .+.+.+|..|+++++|+.++.+++..|+.+|+|.+|.--+-.+
T Consensus        72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI  114 (149)
T ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4567899999999999999999999999999998886544433

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.77  E-value=0.47  Score=55.53  Aligned_cols=62  Identities=8%  Similarity=-0.040  Sum_probs=37.5

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      .|+.+-.+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|++++|+..|++..+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            34455556666666666666666666554 334555666666666666666666666666543

>PLN03077 Protein ECB2; Provisional

Probab=94.69  E-value=0.4  Score=55.56  Aligned_cols=142  Identities=11%  Similarity=0.064  Sum_probs=95.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHH--hhhcCCC------------ChHHHHHHHHH--------HHHHHhcHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF------------GDEEKKQAKAL--------KVACNLNNAA  456 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~--~~~~~~~------------~~~~~~~~~~~--------~~~~~~nla~  456 (562)
                      ...+......|.+.|+.++|+..|++..+.  .|+....            .++-....+.+        ....|..+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            345777888889999999999999987763  2221111            01111112222        1235777888


Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      ++.+.|++++|.+.+++. .+.|+ ...|-.+-.++..-++.+.|....+++++++|++......|..+.....++++..
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence            888889999998888775 34454 4556666667777888888888888999999999888888887777766665443


Q ss_pred             HHHHHhh
Q 008540          537 AKFYGNM  543 (562)
Q Consensus       537 ~~~~~~~  543 (562)
                      + ..+.|
T Consensus       712 ~-vr~~M  717 (857)
T PLN03077        712 R-VRKTM  717 (857)
T ss_pred             H-HHHHH
Confidence            2 33444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.67  E-value=0.15  Score=39.02  Aligned_cols=69  Identities=14%  Similarity=0.236  Sum_probs=54.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+....++|..+|.+.+.++|+..+++|++..++..            .+-.++-.++.+|...|+|.+++++..+-++
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999998776422            1333466788888899999998887766554


Q ss_pred             c
Q 008540          477 L  477 (562)
Q Consensus       477 ~  477 (562)
                      +
T Consensus        72 ~   72 (80)
T PF10579_consen   72 I   72 (80)
T ss_pred             H
Confidence            3

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=1  Score=42.59  Aligned_cols=102  Identities=18%  Similarity=0.091  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC---
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD---  478 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~---  478 (562)
                      +-.-++.|-..++|++|..+..+|.+..+++.+.+         ...+.|-..+....++..|.++...+++|..+.   
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            33444555557889999999999998877766542         133445555666667888889999999887753   


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       479 --p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                        |+..-.-..+|-=.+..-+.++|+..|++++.+-
T Consensus       105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV  140 (308)
T ss_pred             CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence              3333333344444556667889999999988763

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.46  E-value=0.67  Score=47.22  Aligned_cols=114  Identities=19%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCCCC------------------hHHHHHHHHHHHHHHhcHHHHHhhc
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL  461 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~k~  461 (562)
                      ...+.+..++.+|+...|+...+..+. .+.......                  .............+++-+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            345566777777788888888777776 332221000                  0012233445667777777777777


Q ss_pred             ------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008540          462 ------KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPD  514 (562)
Q Consensus       462 ------~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~-----------------~~A~~~~~~al~l~p~  514 (562)
                            +.+++++..|.++++++|++.++|+..|..+..+=+.                 ..|+..|-+|+.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  8899999999999999999999999999888776332                 2477777777777776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.35  E-value=0.063  Score=35.57  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=18.1

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      +++|+|.+|..+|+|++|+..+++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4566777777777777777777666654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.32  E-value=0.34  Score=47.26  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       438 ~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      +......+..+.++.-++..+...++++.++...++.+..+|-+.++|.++-.+|+..|+...|+..|++.-++
T Consensus       143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999999999999999999999999999999988764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.22  E-value=1.8  Score=39.50  Aligned_cols=140  Identities=16%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             HHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH------HHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          405 QGNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       405 ~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      -|-.|++..   +...|-..|.++++.............+.+..      +-.-..+.+|..+...+++++|+..++.+|
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            345555544   45588999999998876443322222222221      122234567888889999999999999999


Q ss_pred             hcCC-CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          476 DLDS-RNVK--ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       476 ~~~p-~~~k--a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      ..-. .+.+  +-.|+|++.+.++.+++|+..+...-  +++-.....++ +.+.....+.. ..+..|++....+
T Consensus       117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~-~Ar~ay~kAl~~~  189 (207)
T COG2976         117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQ-EARAAYEKALESD  189 (207)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchH-HHHHHHHHHHHcc
Confidence            6533 3445  44689999999999999999887543  23323333333 33433333333 3445666655554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.97  E-value=0.98  Score=44.55  Aligned_cols=108  Identities=16%  Similarity=0.047  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC------------hHH-HHHHHH----------HHHHHHhcHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------DEE-KKQAKA----------LKVACNLNNAA  456 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~~~-~~~~~~----------~~~~~~~nla~  456 (562)
                      ++....+..++.+|++.+|...+.+.++-.|.+--..            .+. ...+..          ...-++--+|-
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            4555667788899999999999999998877643110            000 000000          01112223455


Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK  507 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  507 (562)
                      |....|-|.+|.+..+++|++++.+.-|...++-++...+++.++.++..+
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            666666666666666666666666666666666666666666666666554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.88  E-value=0.5  Score=50.41  Aligned_cols=94  Identities=11%  Similarity=0.004  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 008540          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRA  489 (562)
Q Consensus       414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~----~ka~~~~a  489 (562)
                      +...|.+.........|+..-+               ++..|..+...|+.++|++.+++++......    .-++|.+|
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lf---------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~  312 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALF---------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELA  312 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHH
Confidence            3444555555555555543322               5678999999999999999999998643322    34788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       490 ~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                      -||..+.+|++|..+|.+..+.+.-.+.....+
T Consensus       313 w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~  345 (468)
T PF10300_consen  313 WCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence            999999999999999999998765555443333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.66  E-value=0.94  Score=46.49  Aligned_cols=134  Identities=10%  Similarity=0.127  Sum_probs=89.1

Q ss_pred             HHHHHHhhhHHHHHHHHHcCc-HHHHHHHHHHHHHHhhhcCCCCh-------------------HH--------------
Q 008540          394 EKIEAAGKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYDTSFGD-------------------EE--------------  439 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~-------------------~~--------------  439 (562)
                      ++...+..+..-+..+++.|. =+.|++..+.+++.-+.+.....                   .+              
T Consensus       374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            456677778888888888887 56677777766665443210000                   00              


Q ss_pred             HHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 008540          440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN----  515 (562)
Q Consensus       440 ~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~----  515 (562)
                      ...+++.-+.-++.=|.-.+..|+|.+|.-++.-+.+.+| ++.+|.-+|.|++...+|++|..+|..   +-|++    
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~d  529 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRD  529 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHH
Confidence            0000111111123345567789999999999999999999 899999999999999999999999865   44433    


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008540          516 RDVKLEYKTLKEKMKE  531 (562)
Q Consensus       516 ~~~~~~l~~l~~~~~~  531 (562)
                      ..+.+.+..|++.+.+
T Consensus       530 skvqKAl~lCqKh~~k  545 (549)
T PF07079_consen  530 SKVQKALALCQKHLPK  545 (549)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            2345556666555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.65  E-value=0.41  Score=38.64  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=42.4

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      ...+.++|..|++.+.+..+..........      ......+.+|+|.++...|++++|+..+++++.+
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356789999999999999987655433210      1122233556777777777777777777777665

>PRK10941 hypothetical protein; Provisional

Probab=93.63  E-value=0.44  Score=46.55  Aligned_cols=78  Identities=12%  Similarity=-0.053  Sum_probs=66.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      .-+.+.=..+.+.++|..|+++-+..+.+.|.++..               +..+|.+|.+++++..|+.+++.-++..|
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            334555678889999999999999999999987744               56799999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAY  492 (562)
Q Consensus       480 ~~~ka~~~~a~a~  492 (562)
                      +.+.+-.-+.+..
T Consensus       247 ~dp~a~~ik~ql~  259 (269)
T PRK10941        247 EDPISEMIRAQIH  259 (269)
T ss_pred             CchhHHHHHHHHH
Confidence            9988776655443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.62  E-value=2  Score=42.32  Aligned_cols=104  Identities=18%  Similarity=0.162  Sum_probs=75.2

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhc----CC---C
Q 008540          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R  480 (562)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~----~p---~  480 (562)
                      ..++|+++.|..+|.|+-.+.....+       .........++|.|...++.+ +++.|+...++++++    ..   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            45789999999999999988742111       112345556889999999999 999999999999887    21   1


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHH
Q 008540          481 -------NVKALYRRAQAYIQMADLDL---AEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       481 -------~~ka~~~~a~a~~~l~~~~~---A~~~~~~al~l~p~~~~~~  519 (562)
                             ..+.+..++.+|+..+.++.   |...++.+-.-.|+.+.+.
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence                   14577789999999988764   4444444545567766555

It is also involved in sporulation [].

>PLN03077 Protein ECB2; Provisional

Probab=93.51  E-value=0.63  Score=53.93  Aligned_cols=60  Identities=13%  Similarity=0.004  Sum_probs=52.3

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      |..+-.++...++.+.|....+++++++|++...|..++.+|...|+|++|.+..+...+
T Consensus       660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            445545566788999999999999999999999999999999999999999999887754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.51  E-value=0.17  Score=33.37  Aligned_cols=30  Identities=33%  Similarity=0.268  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999875

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.50  E-value=1  Score=43.04  Aligned_cols=91  Identities=16%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             HHHHHHhcHHHHHhhccCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      ....+..-++...++-|+-+.|..+++.+-+    ++  ..+.-.+-+.+..|...++|-+|...|.+.+..||.++.+.
T Consensus       210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~  289 (366)
T KOG2796|consen  210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN  289 (366)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence            3445566789999999999999999996543    22  24456677788888888999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008540          520 LEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       520 ~~l~~l~~~~~~~~~~~  536 (562)
                      ..-+.|...+++...+-
T Consensus       290 NnKALcllYlg~l~DAi  306 (366)
T KOG2796|consen  290 NNKALCLLYLGKLKDAL  306 (366)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            77777776666655443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.31  E-value=4  Score=36.21  Aligned_cols=114  Identities=13%  Similarity=0.035  Sum_probs=80.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+.+......+.++.+.+...+...--+-|.....               -.--|..+++.++|.+|+..++.+.+-
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            34566777778888888888888776555454544332               345688899999999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .|.++-+---++.|+..+++.+ =+.+-..+++-.+ ++.+....+.+..+
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence            8988877778899999999864 1222334444443 56666666665443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.22  E-value=0.91  Score=52.66  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..+|...|...+++++-++|...+.+||+.-|.  +++..-.-|+.-++.|+-+.++..|+-.+.-+|.-.++|.-|-..
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence            445777788888888888888888888888886  777777788888888888888888888888888877777776554


Q ss_pred             HHH
Q 008540          526 KEK  528 (562)
Q Consensus       526 ~~~  528 (562)
                      ..+
T Consensus      1644 eik 1646 (1710)
T KOG1070|consen 1644 EIK 1646 (1710)
T ss_pred             HHc
Confidence            433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.11  E-value=1.6  Score=50.72  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLK  526 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~  526 (562)
                      ++|.-|+-.|.+-+.+++|.+.++..++.--+..+.|...|..++...+-++|...+++||+.-|.  +.++....+.+.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            345667788888999999999999998876678899999999999999999999999999999998  555655555554


Q ss_pred             HHHHH
Q 008540          527 EKMKE  531 (562)
Q Consensus       527 ~~~~~  531 (562)
                      -+...
T Consensus      1611 Fk~GD 1615 (1710)
T KOG1070|consen 1611 FKYGD 1615 (1710)
T ss_pred             hhcCC
Confidence            44433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.11  E-value=0.087  Score=54.07  Aligned_cols=97  Identities=15%  Similarity=0.043  Sum_probs=72.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCCC-Ch-HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSF-GD-EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~-~~-~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+.+.|..+|+.+.|..+..+|.+|++ .+...... .. ........-...+.+|.+..|+..|+...|.+++.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            44557889999999999999999999996 33221100 00 00011111233347899999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHc
Q 008540          476 DLDSRNVKALYRRAQAYIQM  495 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l  495 (562)
                      ..-..|+..|.|+|.|....
T Consensus       363 ~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHHH
Confidence            98889999999999998764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.89  E-value=0.4  Score=38.65  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~---------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p  513 (562)
                      -.++.++|..|++.+.+.+.....         ..-++.++|.++...|++++|+..++.|+++.-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            456889999999988888765421         146788999999999999999999999998743

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.72  E-value=1.4  Score=43.64  Aligned_cols=105  Identities=20%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             hHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          402 KKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       402 ~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      +...|..-++ .++...|.+.|+.+++.++.+...               ++.....+.++++.+.|...+++++..-+.
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~---------------~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF---------------WLEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH---------------HHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            4455555555 677888999999999998875433               445556677899999999999999998665


Q ss_pred             CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          481 NV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       481 ~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      ..   ..|-+...-=...|+++...+..+++.++-|++..+...
T Consensus       103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f  146 (280)
T PF05843_consen  103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF  146 (280)
T ss_dssp             HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            54   355555666667899999999999999998886554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.58  E-value=1.5  Score=38.96  Aligned_cols=83  Identities=17%  Similarity=-0.005  Sum_probs=73.8

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      ..+..+..+-++.++.+++...+..+--+.|+++..-.--|..|...|+|.+|+..|+.+..-.|..+-++.++..|...
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34556777778889999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             HHH
Q 008540          529 MKE  531 (562)
Q Consensus       529 ~~~  531 (562)
                      ++.
T Consensus        91 ~~D   93 (160)
T PF09613_consen   91 LGD   93 (160)
T ss_pred             cCC
Confidence            554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.33  E-value=3.5  Score=37.57  Aligned_cols=77  Identities=17%  Similarity=0.082  Sum_probs=62.0

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLEY  522 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--p~~~~~~~~l  522 (562)
                      ..++..+|.-|.+.|+++.|++.|.++.......   ...++++-++.+..+++..+..++.+|-.+-  +.+.+.+..|
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3457899999999999999999999998876432   6788899999999999999999999998763  3445555444


Q ss_pred             HH
Q 008540          523 KT  524 (562)
Q Consensus       523 ~~  524 (562)
                      ..
T Consensus       116 k~  117 (177)
T PF10602_consen  116 KV  117 (177)
T ss_pred             HH
Confidence            43

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.26  E-value=4.5  Score=42.05  Aligned_cols=100  Identities=24%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH-
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL-  475 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al-  475 (562)
                      ..+..+.-.|-....-+.|+.|...|..|.+....            .++.+.+..|+|..|++.++-+.    +.+++ 
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld  428 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALD  428 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHH
Confidence            34455666777777788899999999999886542            34467778899999999776443    33333 


Q ss_pred             hcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          476 DLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       476 ~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      .+.|.|          ..++|-.|.-.+..+++.+|...+.+.|+..
T Consensus       429 ~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  429 LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            344543          4578888999999999999999999999886

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.16  E-value=2.4  Score=47.00  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=87.8

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-------ccCHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQA  467 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------~~~~~~A  467 (562)
                      ++.......+.|-.+...|+|.+|+++|+.+|-..+-.-..+.++..+++++...+.-.+....+.       ..+.+.+
T Consensus       987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen  987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred             cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence            366677788999999999999999999999998887665555666677777766664444333222       2234444


Q ss_pred             --HHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          468 --EKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       468 --~~~~~~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                        +..|=.-+.+.|-+ +-|+..--..++++++|..|....++.+++.|..+.+
T Consensus      1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence              23333334556654 4455555678899999999999999999999987544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.08  E-value=0.18  Score=48.96  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      |...+.-..+.+.|.+.-..|.++|..+|.|+..|.. .+.-|...++++.|++.|.+++.++|+++.++.++-++.
T Consensus       110 w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E  186 (435)
T COG5191         110 WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRME  186 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence            5555666667889999999999999999999998876 566678889999999999999999999998888776553

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.03  E-value=0.72  Score=46.60  Aligned_cols=98  Identities=13%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--  477 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--  477 (562)
                      ..+.+.|..|+..|+++.|++.|.++-+++....            -.+..+.|+-.+-.-+++|.+...+.++|...  
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~  218 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK------------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPD  218 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence            3467889999999999999999999877765422            13444677777778899999999999998876  


Q ss_pred             --C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540          478 --D----SRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (562)
Q Consensus       478 --~----p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (562)
                        .    .-..+.....|.+++.+++|..|..+|-.+.
T Consensus       219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              1    1235677788999999999999999987664

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.92  E-value=1.8  Score=49.60  Aligned_cols=122  Identities=11%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (562)
                      ..-.++++..+.|++|+..|++.-.-.|......    +..-..-++ ++..|.-.-....+.+|+..+++.-. .|.-+
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  552 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY----EAQFRLGIT-LLEKASEQGDPRDFTQALSEFSYLHG-GVGAP  552 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch----HHHHHhhHH-HHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc
Confidence            3455678888999999999999887776543221    111111111 11222222222468888888877544 46667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      --|.-.|.+|..+++|++-+++|..|++-.|+++++-..-..+--++.
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (932)
T PRK13184        553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH  600 (932)
T ss_pred             hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            779999999999999999999999999999999987766655544443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.89  E-value=0.21  Score=46.56  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ...++.+++..|.+.|.+|+.+.|....-               |+.++....|.|+++.|.+.|.++|+++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34677899999999999999998876655               7889999999999999999999999999965

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.83  E-value=3  Score=42.35  Aligned_cols=126  Identities=17%  Similarity=0.090  Sum_probs=90.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.+..+...+..+.+.|+++.|.....++....+.....           ...+.+..|......|+..+|+...+..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445677888889999999999999999988765332211           112244556667777888888887777766


Q ss_pred             c--C--------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCH
Q 008540          477 L--D--------------------------------SRNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       477 ~--~--------------------------------p~~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~l~p~~~  516 (562)
                      .  .                                ....++++.+|.-...+      +.++++...|+.|.+++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            1  0                                01146777788877777      888999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008540          517 DVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       517 ~~~~~l~~l~~~~~~~~  533 (562)
                      .+...++.....+-...
T Consensus       293 k~~~~~a~~~~~~~~~~  309 (352)
T PF02259_consen  293 KAWHSWALFNDKLLESD  309 (352)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            77777776655554433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.45  E-value=0.36  Score=31.57  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      .+|.++|.+-+..++|++|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888888999999999999998876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.43  E-value=0.68  Score=31.38  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          485 LYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      .+.+|++|..+|+++.|++.++.++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            36788899999999999999988884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.01  E-value=2.6  Score=46.10  Aligned_cols=92  Identities=25%  Similarity=0.212  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHcC-----cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHHHHHH
Q 008540          402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK  473 (562)
Q Consensus       402 ~~~~G~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~  473 (562)
                      ....|..|++..     ++..|+..|.+|-+.-..+.                 .+++|.||..-.   ++..|.+++..
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a-----------------~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA-----------------QYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH-----------------HHHHHHHHHcCCccccHHHHHHHHHH
Confidence            446788888743     78889999999987654332                 568888888766   67899999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 008540          474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID  512 (562)
Q Consensus       474 al~~~p~~~ka~~~~a~a~~~l----~~~~~A~~~~~~al~l~  512 (562)
                      |...  .++.|++++|.||..-    .+...|..++++|-+..
T Consensus       354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8865  6889999999999864    57899999999999887

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.76  E-value=5.4  Score=44.24  Aligned_cols=106  Identities=20%  Similarity=0.122  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCC----hHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (562)
                      .+.--|......+..++|.+++.+|++......       ..+    .+.....+.++..++..++.+.+-+++|..|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            344457788888888899999999999876643       111    123445566778888899999999999999999


Q ss_pred             HHHHHHhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540          470 LCTKVLDLDS---------RNVKALYRRAQAYIQMADLDLAEFDIK  506 (562)
Q Consensus       470 ~~~~al~~~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~  506 (562)
                      ....+.....         -.+..+|-.|..+...|+.+.|+..|.
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            9988776532         247889999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.65  E-value=0.87  Score=29.37  Aligned_cols=33  Identities=24%  Similarity=0.128  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008540          483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN  515 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~--~~~al~l~p~~  515 (562)
                      +.++.+|..+...|++++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567777788888888888888  44676777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.48  E-value=2.1  Score=43.95  Aligned_cols=102  Identities=22%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--------------
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--------------  477 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--------------  477 (562)
                      ...|+++...|..++.....+.-   -..-....+++..++.++.++..+|++..|.+.+++||-.              
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp~~l---~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDPNAL---INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCHHHH---HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            34577777777777764311100   0011222346777889999999999999999999998632              


Q ss_pred             C------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Q 008540          478 D------------SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR  516 (562)
Q Consensus       478 ~------------p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~-~~  516 (562)
                      +            +.|   ..|++|...++.+.|-+..|.++++-.+.+||. |+
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            1            122   458889999999999999999999999999999 65

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.36  E-value=1.4  Score=43.48  Aligned_cols=66  Identities=14%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKAL--EIDPDNR  516 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al--~l~p~~~  516 (562)
                      ....|.++.-.++++++.+...+.-..-...    ..-|..-|.+|..-++|+.|++.|.+-+  +++.++.
T Consensus       212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            4466777777889999988776654322211    2335567999999999999999997755  5566665

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.53  E-value=3.6  Score=42.17  Aligned_cols=81  Identities=16%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---------CCC------hHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---------SFG------DEEKKQAKALKVACNLNNAACKLKLKD  463 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---------~~~------~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (562)
                      +..+.+.+..+..+|++..|....++||-.+....         ...      +-...+.+.+... .+.......+.|.
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla-l~r~i~~L~~RG~  118 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA-LFRYIQSLGRRGC  118 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH-HHHHHHHHHhcCc
Confidence            45677888888888998888888888887655210         000      0112223333333 3355667789999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 008540          464 YKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~  480 (562)
                      |..|++.|+-.+.+||.
T Consensus       119 ~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999997

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=89.49  E-value=2.1  Score=47.50  Aligned_cols=87  Identities=11%  Similarity=0.073  Sum_probs=73.2

Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      ..++|.+|+..|.++++..|+..-|..-.|..+.++|++++|...++..-.+-+++......+..|...+.+..+.- ..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~-~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV-HL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH-HH
Confidence            46789999999999999999999999999999999999999998888777777888888888888888888776543 35


Q ss_pred             HHhhcccc
Q 008540          540 YGNMFAKM  547 (562)
Q Consensus       540 ~~~~f~~~  547 (562)
                      |.+..++.
T Consensus       100 Ye~~~~~~  107 (932)
T KOG2053|consen  100 YERANQKY  107 (932)
T ss_pred             HHHHHhhC
Confidence            65555443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=89.45  E-value=3.5  Score=34.43  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      +-.+--....+...|+|++++..-.+||.++........++-+.    -+.+-+++|.++.-+|+.++|+..++.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            34556677788899999999999999999988766554444332    3455679999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.33  E-value=2.4  Score=32.54  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      ..|..+..++..+=+.|+|.+|+.+|..|++++-.
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35677788899999999999999999999998765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.18  E-value=0.53  Score=27.75  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 008540          483 KALYRRAQAYIQMADLDLAEFDIK  506 (562)
Q Consensus       483 ka~~~~a~a~~~l~~~~~A~~~~~  506 (562)
                      .+++.+|.+|..+|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356677777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.12  E-value=4.3  Score=31.45  Aligned_cols=66  Identities=17%  Similarity=0.111  Sum_probs=50.2

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHHHHHHHHhcHHHHHhhc
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL  461 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~k~  461 (562)
                      .+.|....++|-.+=..|+.++|+.+|+++++.+....      ....++++.++.++.+.-.|+..+-.++
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677788888888889999999999999999986532      2244677778777777777776665544

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.09  E-value=2.9  Score=32.00  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~  432 (562)
                      +.|..+..++..+=+.|+|.+|+.+|++|++.+..-
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            457778889999999999999999999999987653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.08  E-value=5  Score=41.72  Aligned_cols=100  Identities=23%  Similarity=0.162  Sum_probs=79.3

Q ss_pred             HHhhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHH
Q 008540          398 AAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVL  475 (562)
Q Consensus       398 ~a~~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al  475 (562)
                      .|....+.|..+|. ..+++.|..+.++|..+...-+...        ..+-.++.-+|.||.... .+..|....++++
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai  116 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI  116 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            46667778877775 8999999999999999877665542        223344667888888887 8999999999999


Q ss_pred             hcCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 008540          476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDI  505 (562)
Q Consensus       476 ~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~  505 (562)
                      ++..++    .|.++.+|+.+.-..+|..|.+.+
T Consensus       117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            987665    467788999999999999888764

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.07  E-value=2.9  Score=32.27  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      ..|..+..+|..+=+.|+|.+|+.+|.+||+.+..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34667788889999999999999999999998765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.00  E-value=14  Score=39.90  Aligned_cols=124  Identities=15%  Similarity=0.117  Sum_probs=89.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+...|..|-..|+.+.|...|++|+...=...           +-+..+|++-|..-++..+++.|+...++|+.. |.
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v-----------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~  456 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTV-----------EDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PT  456 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CC
Confidence            456777888888999999999999887522111           124566888898999999999999999888765 33


Q ss_pred             C-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          481 N-------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       481 ~-------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      +                   .+.|-..+.....+|-++.....|.+.++|---.+.+..+++...+...-.++.-
T Consensus       457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF  531 (835)
T KOG2047|consen  457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF  531 (835)
T ss_pred             chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence            3                   3344445555666778888888889999888888888888887765555554443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.93  E-value=2.5  Score=40.86  Aligned_cols=66  Identities=20%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+.|.+||+.|+|+.|++.|+.+........         ...+...++..+..|+.++++.+..+..|-+.+.
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            35788888999999999999988865554322         2244555567788888888888888888876653

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.91  E-value=14  Score=39.45  Aligned_cols=118  Identities=18%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHH
Q 008540          326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ  405 (562)
Q Consensus       326 ~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~  405 (562)
                      +.-..+..++..|.++....+.++.-|..                                      .-.+..|...+.+
T Consensus       256 qaq~~F~~av~~~d~n~v~~lL~ssPYHv--------------------------------------dsLLqva~~~r~q  297 (665)
T KOG2422|consen  256 QAQRDFYLAVIVHDPNNVLILLISSPYHV--------------------------------------DSLLQVADIFRFQ  297 (665)
T ss_pred             HHHHHHHHHHhhcCCcceeeeeccCCcch--------------------------------------hHHHHHHHHHHHh
Confidence            45566888888888888888777653321                                      1234455555555


Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHh--hhcCCCChH-HHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-C
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYI--EYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-N  481 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~--~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-~  481 (562)
                      |..-..++-.++|+-.+.+|+.-.  +......-+ ..-..+.+...+| ..-....+.|.|.-|.++|...+.++|. +
T Consensus       298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp~eD  376 (665)
T KOG2422|consen  298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDPSED  376 (665)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCCcCC
Confidence            555555555555666666655421  110000000 0011222222223 2234455899999999999999999997 5


Q ss_pred             H
Q 008540          482 V  482 (562)
Q Consensus       482 ~  482 (562)
                      +
T Consensus       377 P  377 (665)
T KOG2422|consen  377 P  377 (665)
T ss_pred             c
Confidence            3

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.41  E-value=5.2  Score=37.30  Aligned_cols=70  Identities=14%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ...++.+..++|+...+.-++..|.+.-....+-+.|.-.|+|++|...++-+-.++|++..-...++.+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l   78 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL   78 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            3566888999999999999999999988888888999999999999999999999999986555555544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=87.29  E-value=8.3  Score=38.93  Aligned_cols=87  Identities=9%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HH-HHHHHHHHHH
Q 008540          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM-KE-YNKKEAKFYG  541 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~-~~-~~~~~~~~~~  541 (562)
                      .+..+..+++||+.+|++.+.+..+-.+..++.+-++..+-+++++..+|++..++..+-...+.. .. .-..-+..|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            567788999999999999999999999999999999999999999999999988888776554431 11 1123345666


Q ss_pred             hhccccCCC
Q 008540          542 NMFAKMTEP  550 (562)
Q Consensus       542 ~~f~~~~~~  550 (562)
                      +.+..+...
T Consensus       127 ~~l~~L~~~  135 (321)
T PF08424_consen  127 KCLRALSRR  135 (321)
T ss_pred             HHHHHHHHh
Confidence            666555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.12  E-value=2.3  Score=46.83  Aligned_cols=114  Identities=15%  Similarity=0.039  Sum_probs=74.7

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHH-------HhhhcCCCChHHHHHHHHH-HHHHHhcHHHHHhhccCHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVK-------YIEYDTSFGDEEKKQAKAL-KVACNLNNAACKLKLKDYKQ  466 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~-------~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~k~~~~~~  466 (562)
                      ++..-..+.+.+..+-.+++...|+++|+++-.       ++..++..   -..-++.. -..+|..-|+..-..|+.+.
T Consensus       854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~---~e~Yv~~~~d~~L~~WWgqYlES~Gemda  930 (1416)
T KOG3617|consen  854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ---IEQYVRRKRDESLYSWWGQYLESVGEMDA  930 (1416)
T ss_pred             ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH---HHHHHHhccchHHHHHHHHHHhcccchHH
Confidence            333344556666666667777777777776532       11111110   00111111 12456777888888899999


Q ss_pred             HHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          467 AEKLCTKVLDL---------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       467 A~~~~~~al~~---------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      |+..|..|-..                     ...+.-|-|.+|+-|...|++.+|+..|.+|..+
T Consensus       931 Al~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  931 ALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99988887542                     2456778999999999999999999999988654

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.63  E-value=3.7  Score=31.49  Aligned_cols=36  Identities=25%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      +..|..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456778888999999999999999999999998765

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.49  E-value=15  Score=40.63  Aligned_cols=124  Identities=15%  Similarity=0.143  Sum_probs=87.7

Q ss_pred             cccCChHHHHHHHhhhHHHHHHHH-HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHH
Q 008540          387 SWDMNTEEKIEAAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK  465 (562)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~  465 (562)
                      .+.+++.   ..+....+.|..++ ...+++.|..+.++|+.+... ...        .+++-.+.+-++.++.+.+...
T Consensus        50 ~~~l~p~---~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   50 QFKLSPR---QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             cCCCCHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH
Confidence            3445543   34666778888888 588999999999999998876 222        2344455556688888887777


Q ss_pred             HHHHHHHHHHhcCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 008540          466 QAEKLCTKVLDLDSR----NVKALYRRAQAYIQ--MADLDLAEFDIKKALEID--PDNRDVKLEYK  523 (562)
Q Consensus       466 ~A~~~~~~al~~~p~----~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~--p~~~~~~~~l~  523 (562)
                       |+..|+++++...+    .+...|++-++.+.  .+++..|++.++....+.  ..++.+.-.+.
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~  182 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS  182 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence             99999999987655    46666666544333  369999999999998876  45655544433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.37  E-value=3.8  Score=30.75  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      +.|..+..+|..+=+.|+|+.|+.+|.+|+..+-.
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999998754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.28  E-value=5.1  Score=30.73  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~  432 (562)
                      +..|..+..+|...=+.|+|.+|+.+|..+++.+-..
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~   39 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3456777888888899999999999999999987653

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=86.19  E-value=15  Score=37.43  Aligned_cols=63  Identities=21%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      -+...|..+..+++++.|+.+.+-.--+++|+..|+..++-..++.+.+.+|. +++...+..+
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a  305 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA  305 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999875 4566555443

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.10  E-value=4.5  Score=30.98  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      ++.|..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456778888999999999999999999999998754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.06  E-value=4.8  Score=37.93  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV-KALYRRAQA  491 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~-ka~~~~a~a  491 (562)
                      +.+-+|..+.++|++++|+..+.+++.....+. ..+.++|+-
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD  209 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            466799999999999999999999998643332 366666653

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=86.00  E-value=16  Score=36.04  Aligned_cols=105  Identities=24%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----c--CHHHHHH
Q 008540          401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK  469 (562)
Q Consensus       401 ~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~A~~  469 (562)
                      .....|..++.    ..++.+|...|.+|.+.-....              ..+.++++.+|..-     -  +...|+.
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~  176 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY  176 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence            44557777766    4589999999999997643221              12244666666553     1  3347999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      .+.++-...  +..+.+++|.+|..    ..++.+|..+|++|-+...  ......+.
T Consensus       177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            999988765  88999999988866    3489999999999998875  44444444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.98  E-value=5.1  Score=40.91  Aligned_cols=52  Identities=15%  Similarity=0.332  Sum_probs=41.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK  538 (562)
Q Consensus       487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  538 (562)
                      .+..||+.+++.+.|+....+.+.++|.+..-..-.+.|.+++.++.++.+.
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS  284 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS  284 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999854444445567777777766554

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.65  E-value=20  Score=35.40  Aligned_cols=90  Identities=21%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             HHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCC
Q 008540          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------N--VKALYRRAQAYIQMADLDLAEFDIKKAL--EIDP  513 (562)
Q Consensus       444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~--~ka~~~~a~a~~~l~~~~~A~~~~~~al--~l~p  513 (562)
                      .+....+..-+|..|-+.++|..|.+.+.- +..+..      +  ...+.++|++|+..++-.+|..+..++-  ..+.
T Consensus        99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~  177 (399)
T KOG1497|consen   99 EEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES  177 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence            345566778899999999999998876643 333321      1  2345689999999999999999999874  3466


Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q 008540          514 DNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       514 ~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      .|....-+++.|+.+.-.++.
T Consensus       178 ~Ne~Lqie~kvc~ARvlD~kr  198 (399)
T KOG1497|consen  178 SNEQLQIEYKVCYARVLDYKR  198 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH
Confidence            888899999888887765544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=85.57  E-value=2.9  Score=40.36  Aligned_cols=71  Identities=15%  Similarity=0.025  Sum_probs=60.9

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (562)
                      =+.+.+.+++..|.+.-.+.+.+.|.++..               ...+|.+|.+++.+.-|+.+++..++..|+.+.+-
T Consensus       188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         188 KAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            356777899999999999999999988754               56899999999999999999999999999988776


Q ss_pred             HHHHHH
Q 008540          486 YRRAQA  491 (562)
Q Consensus       486 ~~~a~a  491 (562)
                      .-++..
T Consensus       253 ~ir~~l  258 (269)
T COG2912         253 MIRAQL  258 (269)
T ss_pred             HHHHHH
Confidence            655543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.10  E-value=9.2  Score=33.49  Aligned_cols=71  Identities=13%  Similarity=-0.052  Sum_probs=36.1

Q ss_pred             HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      +-+...+.+++.......--+.|++...-.--|..|...|+|.+|+..|+...+-.+..+-.+.++..|..
T Consensus        19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            33335555555555554444555555555555555555555555555555554444444444444444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.70  E-value=9.9  Score=37.22  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=45.4

Q ss_pred             HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK  506 (562)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~  506 (562)
                      .+.-....+++.+|...+..++..+|.|..+..-++.||...|+.+.|...|.
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~  192 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA  192 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence            34445578999999999999999999999999999999999999987665553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.13  E-value=16  Score=39.91  Aligned_cols=114  Identities=18%  Similarity=0.034  Sum_probs=79.4

Q ss_pred             HhhhHHHHHHHHH-----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-----CHHHHH
Q 008540          399 AGKKKEQGNTLFK-----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----DYKQAE  468 (562)
Q Consensus       399 a~~~~~~G~~~~~-----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-----~~~~A~  468 (562)
                      +......|..++.     .++.+.|+.+|+.|..-+-.          ........+.+.+|.||++..     ++..|+
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~  313 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL  313 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence            3445556666664     35899999999999872000          000001223678999999843     788899


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          469 KLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ..+.++-..  .|+.+.|++|.+|..-.   ++..|..+|..|.+.  .+..+...+..|.
T Consensus       314 ~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y  370 (552)
T KOG1550|consen  314 KLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCY  370 (552)
T ss_pred             HHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence            999998876  57889999999999877   678999999998754  3444555555553

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.12  E-value=7.5  Score=29.65  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~  432 (562)
                      +.+..+...|...=+.|+|++|+.+|..|++.+-..
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~   39 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            456677788888889999999999999999987653

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=83.82  E-value=17  Score=30.05  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             HHHHHhhccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 008540          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~k---a~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      +|.-++..|++-+|++..+..+...+++..   .+...|.++..+..           +-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            577888999999999999999998877654   44456777766643           3478999999999999984443


Q ss_pred             HHHH
Q 008540          520 LEYK  523 (562)
Q Consensus       520 ~~l~  523 (562)
                      -+++
T Consensus        82 ~~la   85 (111)
T PF04781_consen   82 FELA   85 (111)
T ss_pred             HHHH
Confidence            3333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.21  E-value=18  Score=31.79  Aligned_cols=109  Identities=11%  Similarity=0.028  Sum_probs=71.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+.+.........+...+.......--+-|.....               -.--+..++..|+|.+|++.++.+.+-.+
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            344445555555777777766665444444544433               33467889999999999999999999888


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..+-+---++.|+..+|+.+ =..+-..++.-+ .++++..+.+.+
T Consensus        76 ~~p~~kAL~A~CL~al~Dp~-Wr~~A~~~le~~-~~~~a~~Lv~al  119 (153)
T TIGR02561        76 APPYGKALLALCLNAKGDAE-WHVHADEVLARD-ADADAVALVRAL  119 (153)
T ss_pred             CchHHHHHHHHHHHhcCChH-HHHHHHHHHHhC-CCHhHHHHHHHH
Confidence            87877778899999999864 112223334333 344455555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=83.13  E-value=43  Score=34.34  Aligned_cols=97  Identities=15%  Similarity=0.072  Sum_probs=74.4

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQ---MADLDLAEFDIKKAL-EIDPDNRDVKLE  521 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~----~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~al-~l~p~~~~~~~~  521 (562)
                      ...|+-.+|....+|+.-+...+..-.+    -++.....+..|.|+-+   .|+.++|+..+..++ ..++.+++..-.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3558888899999999999988877665    34567777888899999   999999999999954 556677899999


Q ss_pred             HHHHHHHHHHH--------HHHHHHHHHhhccc
Q 008540          522 YKTLKEKMKEY--------NKKEAKFYGNMFAK  546 (562)
Q Consensus       522 l~~l~~~~~~~--------~~~~~~~~~~~f~~  546 (562)
                      ++++.+.+-..        ..+.-.+|++-|..
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            99887766432        33445677777654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=83.11  E-value=12  Score=38.42  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH--------Hhc----CCCC
Q 008540          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV--------LDL----DSRN  481 (562)
Q Consensus       414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a--------l~~----~p~~  481 (562)
                      ..++|+..|.+|.+..++..+                -.|+|.+..-.|.-.+....+.++        .+.    .-.+
T Consensus       241 ~ldkAi~~Y~kgFe~~~~~Y~----------------GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d  304 (374)
T PF13281_consen  241 SLDKAIEWYRKGFEIEPDYYS----------------GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD  304 (374)
T ss_pred             HHHHHHHHHHHHHcCCccccc----------------hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence            489999999999998765433                236666666655422222111111        111    1233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ...+-.++.|..-.+++++|+.++++++++.|.......-++.+
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni  348 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI  348 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence            44555778888999999999999999999999987666555544

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.09  E-value=2.8  Score=36.58  Aligned_cols=47  Identities=28%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD  497 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~  497 (562)
                      ...+|...+..|+|..|++.++.++..+|+|..+...++.+|.+++.
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            34566667777888888888888888888887777777777777664

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.05  E-value=18  Score=27.69  Aligned_cols=17  Identities=18%  Similarity=0.124  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHhCCCCHH
Q 008540          501 AEFDIKKALEIDPDNRD  517 (562)
Q Consensus       501 A~~~~~~al~l~p~~~~  517 (562)
                      |++.|.+++.+.|+++.
T Consensus        32 aIe~L~q~~~~~pD~~~   48 (75)
T cd02682          32 AIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHhCCChHH
Confidence            44445566666777654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.04  E-value=4.2  Score=39.81  Aligned_cols=62  Identities=19%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      |+.+|.+|+.+.|.+-..|..+|..+...++.=.|+-+|-|++...-..+.++..|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997765567788888777655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.91  E-value=8.1  Score=40.15  Aligned_cols=102  Identities=16%  Similarity=0.055  Sum_probs=77.1

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (562)
                      ..-...+..|+...|-+....+++..+.++..               ..-++..+..+|.|+.|.++..-+-..-....+
T Consensus       294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~  358 (831)
T PRK15180        294 LSITKQLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS  358 (831)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch
Confidence            33445667889999999888899888877654               345688888999999998888777666556667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (562)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~  520 (562)
                      +..-+-+.+.+++++++|...-...|.-+-+++++..
T Consensus       359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~  395 (831)
T PRK15180        359 TLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLT  395 (831)
T ss_pred             HHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhee
Confidence            7777788888999999998888777765555555443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.82  E-value=2.3  Score=27.76  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      ..+...|...+...+|.+|+..|.+|+.+...
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999987653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.70  E-value=3.6  Score=42.47  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 008540          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLE  521 (562)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~p~--~~~~~~~  521 (562)
                      .-.+++++..|-||+-+++|.+|++.+..+|..-......++.+..-|-. ....|+....+--++.+.|.  +..+...
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~  240 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ  240 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            34677789999999999999999999999986422111122222222222 23445666666667777885  4445555


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHhhcccc
Q 008540          522 YKT-LKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       522 l~~-l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      ++. ...++.+-.+..-..|..+|...
T Consensus       241 lkeky~ek~~kmq~gd~~~f~elF~~a  267 (404)
T PF10255_consen  241 LKEKYGEKMEKMQRGDEEAFEELFSFA  267 (404)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence            443 33344444444567888888753

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.60  E-value=7.1  Score=29.90  Aligned_cols=35  Identities=23%  Similarity=0.062  Sum_probs=30.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      +.+..+..+|...=..|+|++|+..|.+|++++-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            45677788888888999999999999999999876

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=82.34  E-value=6.2  Score=31.45  Aligned_cols=48  Identities=19%  Similarity=0.108  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       419 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +..+++++...|.+..               +.+.+|.+++..|++++|++.+-.++..++++
T Consensus         8 ~~al~~~~a~~P~D~~---------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLD---------------ARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HH---------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4556666766665433               26789999999999999999999999999876

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.29  E-value=9.8  Score=40.51  Aligned_cols=126  Identities=21%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             HHHHHHHHH---cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--
Q 008540          403 KEQGNTLFK---AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--  477 (562)
Q Consensus       403 ~~~G~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--  477 (562)
                      .+.|+.+|+   ...|++|.+.|.-|+...+......   .-.-..+++..++.+|..+..+|+.+-|.....++|-.  
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~---lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d  315 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLI---LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD  315 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceee---eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            445555664   4568889888888887654322110   00001345666778899999999988877777776531  


Q ss_pred             -------------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHHHH
Q 008540          478 -------------------DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NRD-VKLEYKTLKEKMKE  531 (562)
Q Consensus       478 -------------------~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~-~~~-~~~~l~~l~~~~~~  531 (562)
                                         .|.|   ..++||--+.+.+.|-+..|.++++..+.++|. |+- +...+.....+-++
T Consensus       316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrare  393 (665)
T KOG2422|consen  316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRARE  393 (665)
T ss_pred             HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHh
Confidence                               2333   457778888889999999999999999999999 763 44444433333333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.12  E-value=3.5  Score=40.37  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008540          418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ  494 (562)
Q Consensus       418 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~  494 (562)
                      |.++|.+|+.+.|.....               |+.+|..+...++.-.|+-+|-+++........|.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            789999999999988755               89999999999999999999999998776678888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.47  E-value=15  Score=35.53  Aligned_cols=84  Identities=17%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC--C----CHHHHHHHH
Q 008540          416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--R----NVKALYRRA  489 (562)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--~----~~ka~~~~a  489 (562)
                      ...+..+++|+..+.....         ..+...+...+|.-|++.|+|++|+..++.++....  .    ....+.++.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~  225 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL  225 (247)
T ss_pred             HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            4556667777766554332         234445567899999999999999999999965422  1    245677889


Q ss_pred             HHHHHcCCHHHHHHHHHHH
Q 008540          490 QAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       490 ~a~~~l~~~~~A~~~~~~a  508 (562)
                      .|+..+|+.+..+...-+.
T Consensus       226 ~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  226 ECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHhCCHHHHHHHHHHH
Confidence            9999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.40  E-value=11  Score=28.79  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      +..|..+..+|..+=+.|+|++|+.+|.+|++.+..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345677788888899999999999999999998765

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.20  E-value=12  Score=28.89  Aligned_cols=59  Identities=17%  Similarity=0.026  Sum_probs=44.1

Q ss_pred             cHHHHHhhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      ..++-++..++.++|+....++|+..++..   .++=.+..||...|+|++++++-.+=+.+
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445578889999999999999877664   44556778899999999888776554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=81.02  E-value=11  Score=40.32  Aligned_cols=77  Identities=16%  Similarity=0.023  Sum_probs=59.1

Q ss_pred             HHHhcHHHHHhhccC-HHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          449 ACNLNNAACKLKLKD-YKQAEKLCTKVLDLDSRNVKALYRR------AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       449 ~~~~nla~~~~k~~~-~~~A~~~~~~al~~~p~~~ka~~~~------a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      .++.|++.+....+. +..+...+..+....|+|...+..+      ++.+..+++..+|...+.++..+.|.++.+...
T Consensus       102 ~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~  181 (620)
T COG3914         102 PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA  181 (620)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence            447888887777665 4455556666999999998877776      888888899999999999999999999665554


Q ss_pred             HHHH
Q 008540          522 YKTL  525 (562)
Q Consensus       522 l~~l  525 (562)
                      +--.
T Consensus       182 ~~~~  185 (620)
T COG3914         182 LMTA  185 (620)
T ss_pred             HHHH
Confidence            4433

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.79  E-value=13  Score=35.90  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI-------DPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-------~p~~~~~~~~l~~l~~~  528 (562)
                      +..+.++|+..+.++|++.+..    .||+-..-++++++++|++-++.|++.|..       +-..+.+...+.-+...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            5668999999999999999764    689999999999999999988888877643       33333344444333221


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCC
Q 008540          529 MKEYNKKEAKFYGNMFAKMTEPKEAEPM  556 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~  556 (562)
                      .+.  .--..+|..-+..+.+.++..-|
T Consensus       119 ~~m--~LLQ~FYeTTL~ALkdAKNeRLW  144 (440)
T KOG1464|consen  119 KNM--DLLQEFYETTLDALKDAKNERLW  144 (440)
T ss_pred             hhh--HHHHHHHHHHHHHHHhhhcceee
Confidence            111  11234566555666555544433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=80.44  E-value=5.7  Score=41.77  Aligned_cols=74  Identities=18%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l---~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      ...+..|+.+|.+++..-|.+...|.++|.++++.   |+--.|+.++..|++++|....+..-|.++...+.+..+
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            34578899999999999999999999999999986   456689999999999999987777777776666665544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.37  E-value=2  Score=25.24  Aligned_cols=23  Identities=30%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      +++++|..+..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            46799999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.05  E-value=16  Score=41.70  Aligned_cols=109  Identities=16%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-  479 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-  479 (562)
                      ....-|+.+|..+.|+.|.-.|...-.                       |..+|.....+|+|+.|....++|-...- 
T Consensus      1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred             hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence            456789999999999999888864322                       66788889999999999999888754310 


Q ss_pred             --------C----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          480 --------R----------------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       480 --------~----------------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                              +                +..-+=.+-.-|...|-|++-+..++.+|-|+-.+-....+|+.+..+.+-.
T Consensus      1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred             HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHH
Confidence                    0                0111223445567788899999999999999877777788888877666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	562
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-148
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-145
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		2e-30
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-55
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-55
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-52
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		5e-50
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-34
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-23
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-12
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-32
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		5e-13
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		6e-29
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		3e-09
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		5e-28
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		1e-12
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		4e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-13
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		6e-27
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-13
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		6e-27
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-13
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		7e-26
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		8e-13
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		8e-26
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		9e-13
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		9e-26
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		9e-13
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		9e-26
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		9e-13
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		6e-25
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		6e-09
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		1e-24
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		2e-05
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-24
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		3e-09
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-24
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-24
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-07
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		5e-24
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		5e-24
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		1e-08
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		5e-24
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-08
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		6e-24
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		7e-06
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		6e-24
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		6e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		6e-24
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		2e-08
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		6e-24
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		2e-08
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		8e-24
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-08
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		1e-23
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		4e-08
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-23
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		1e-08
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-23
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		3e-23
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		1e-07
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		4e-23
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		1e-07
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		9e-23
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		1e-08
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-22
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		4e-09
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		3e-22
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		2e-08
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		4e-22
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		1e-04
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-21
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		5e-21
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		1e-09
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		5e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-04
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		4e-20
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		3e-10
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		4e-20
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		3e-10
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		7e-18
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		3e-13
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		3e-17
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		3e-17
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		4e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		7e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		1e-12
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		4e-14
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		1e-13
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-11
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		1e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		2e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		6e-06
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		2e-10
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		5e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-09
3oe2_A	219	1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		6e-04
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		4e-07
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		7e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		3e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		4e-04
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		3e-06
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		5e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		1e-05
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		6e-04
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		2e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-04
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		3e-04
1wao_1	477	Pp5 Structure Length = 477		3e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/363 (74%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 17  KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 76
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 77  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 136
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 137 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 196
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 197 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 256
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 257 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 315
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KE
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKE 374
Query: 387 SWD 389
           SWD
Sbjct: 375 SWD 377

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  513 bits (1320), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 2/358 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 299
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 166 WENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKV 221
           W+ P+  DEV V+Y   L DG     +    D  +F +  G       + +KTMKKGE  
Sbjct: 24  WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 83
Query: 222 LLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281
           L  + P+  +GE     SG+   +P NATLQ  +EL+SW +V +I  D  + KKILKEGD
Sbjct: 84  LFTIPPELAYGE-----SGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGD 138
Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
            +E P +   V VK   +L+DGTV  K       +  EF   +  +   L +AV TMKK 
Sbjct: 139 KWENPKDPDEVFVKYEARLEDGTVVSKS------EGVEFTVKDGHLCPALAKAVKTMKKG 192
Query: 342 EVALLTIAPEYAFG--SAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           E  LL + P+Y FG     +  E   VPPN+++  ++ELVS++   E  D
Sbjct: 193 EKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGD 242

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 210/388 (54%), Gaps = 19/388 (4%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y  +L +G     +    +   F++  G         V TMKKGE   
Sbjct: 45  ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     A+G+   +P NATL   +EL+ +K   ++ +D  +I++  + G+G
Sbjct: 105 LLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G VF  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           ++Y +A + C K L LDS N K LYRR +A + M + + A+ D +K LE++P N+  +L+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
               ++K KE+N+++ + Y NMF K  E
Sbjct: 391 IFMCQKKAKEHNERDRRTYANMFKKFAE 418

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  213 bits (541), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 213/388 (54%), Gaps = 19/388 (4%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +    +   F++  G         V TMK+GE   
Sbjct: 45  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 105 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           ++Y +A + C K L LDS N K LYRR +A + M + + A+ D +K LE++P N+  +L+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
               ++K KE+N+++ + Y NMF K  E
Sbjct: 391 ISMCQKKAKEHNERDRRIYANMFKKFAE 418

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 175/289 (60%), Gaps = 13/289 (4%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFEL 248
Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++ E
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  195 bits (496), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 174/289 (60%), Gaps = 13/289 (4%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D  +F       +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-KLF-------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+   +K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+ N+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++ E
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
               PE AYG +GS P IP NATL F++ELL +                      + NP 
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 167
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
           +   V ++ E R    M       V FTV +G  H  P  + KA++ M++ E+ +L + P
Sbjct: 168 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 225
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +YGFGE GK   G    + PNA L   + L S++   E
Sbjct: 226 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKE 259

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +    +   F++  G         V TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 162
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 163 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 216
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+
Sbjct: 217 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV-XXXXXXXXXXXXXXXXXXXWENP 169
            T  PE AYG +GSPP IPPNATL F+VEL  +                       +  P
Sbjct: 125 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKP 184
Query: 170 KDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVK 226
            +   V V  E   +D +   +   + F + +G        L +A++ M+KGE  ++ +K
Sbjct: 185 NEGAIVEVALEGYYKDKLFDQRE--LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLK 242
Query: 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           P Y FG  GK        +PPNA L+  L L S++   E
Sbjct: 243 PSYAFGSVGKEKF----QIPPNAELKYELHLKSFEKAKE 277

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 25/232 (10%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y   L DG      + + D   F +  G        A+ TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD--DKKVIKKILKEG 280
           +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++T+  D  +I++I   G
Sbjct: 125 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 178
Query: 281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
           +G+ +PNEGA+V+V L G  +D  +F       +++   F+  E + +D   GL+RA+  
Sbjct: 179 EGYAKPNEGAIVEVALEGYYKD-KLF-------DQRELRFEIGEGENLDLPYGLERAIQR 230
Query: 338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SFEK KESW+
Sbjct: 231 MEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 107
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 160

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score =  125 bits (314), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 66/90 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD G+ TM  GE A+FT
Sbjct: 40  PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 274 KKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR 333
           KK+L  GDG  +P  G  V V   G+  DG  F         + F+F     +VI G D+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
            V TM   E AL TI  + A+G    +    V+PP +T+ +EVEL++
Sbjct: 86  GVATMTLGEKALFTIPYQLAYG---ERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 68/93 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIKGWD+G+ TM KGE A FT
Sbjct: 30  PTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           I  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 90  IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKF--DSSRDRGDQFSFNLGRGNVI 70
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESW 388
            G D  V TM K EVA  TI  +Y +G A S  +   +P  +T+ +EVEL  +  E  S 
Sbjct: 71  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK---IPGGATLIFEVELFEWSAEDISP 127
Query: 389 DMN 391
           D +
Sbjct: 128 DRD 130

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 153/313 (48%), Gaps = 19/313 (6%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP              + +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVD-----------SEAEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKES---WDMNTXXXXXXXXXXXXQGNTLFKAG 413
            E       VPP + + YEVE++ F++ KE     DM               GN+LFK  
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193
Query: 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV--ACNLNNAACKLKLKDYKQAEKLC 471
           K   A ++YE A+ Y+  D  F    K Q  AL V   C+LN AAC +KLK Y +A   C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
             VL  + +N KAL+RR +A  ++  +D A  D +KA +  PD++ ++ E + L E+ K 
Sbjct: 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313
Query: 532 YNKKEAKFYGNMF 544
             +K+ + Y  +F
Sbjct: 314 LYQKQKEMYKGIF 326

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 65/93 (69%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI + TMK GE   
Sbjct: 44  ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 104 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 86
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D AV TMK  E+  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 87  KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 139

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 49  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 109 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 92  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 45  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 88  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 140

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 59/89 (66%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTGTL DG  FDSSR R  PF+FT+G+G VI+GWD G+  M  G+ A   
Sbjct: 17  PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
             P+ AYG  G P  IPPNATL FDVELL
Sbjct: 77  CSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L  GD    P  G V  V   G L DG VF         + F F     +VI G D  V 
Sbjct: 8   LAAGDEATYPKAGQVAVVHYTGTLADGKVF--DSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A L  +P+YA+G   S+    V+PPN+T+ ++VEL+  E
Sbjct: 66  QMSVGQRAKLVCSPDYAYG---SRGHPGVIPPNATLTFDVELLRVE 108

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G VIKGWD+GI  +  GE A  T
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           IP   AYG  G P  IPPN+TL FDVELL
Sbjct: 82  IPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +    I +I   GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGNVKIDRI-SPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSP-----FQC 54
Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                QVI G D  +  +   E A LTI   YA+G    +    ++PPNST+ ++VEL+
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELL 110

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPPNATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFVLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PPN+T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPNATLIFDVELLKLE 107

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G   ++    V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYG---ARGAAGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF+F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    FEF      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 89
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 90  QLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFK 321
           +++ +T +  +  + L EG G E    G  V V   G L DG  F      +    F F 
Sbjct: 4   SMTVVTTESGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFV 60
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 61  LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 115

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKAGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 18  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 78  ISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 7   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 64
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 109

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G+VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGHVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 111

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 35  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 92  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWQEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWAEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRD++ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      ++ + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDKNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGVP---GIIPPHATLVFDVELLKLE 107

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +F SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQ-LFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV 366
             G S++    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+
Sbjct: 140 --GSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVI 194
Query: 367 PPNSTVHYEVELV 379
           PPN+T+ +EVEL+
Sbjct: 195 PPNATLVFEVELL 207

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE--QLFEFKTDEEQVIDGLD 332
           + +  GDG   P  G    V   G L+DG    KK  S  +  + F+F   +++VI G +
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE--QLFEFKTDEEQVIDGLD 332
           + +  GDG   P  G    V   G L+DG    KK  S  +  + F+F   +++VI G +
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G++ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGFEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G + G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI GL+  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGLEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T
Sbjct: 16  PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143
             P++AYG +G P  IPPNATL FDVELL+ 
Sbjct: 76  CTPDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P +G    V   G LQ+G  F      +  + F+F+  +++VI G +    
Sbjct: 7   ISPGDGRTFPKKGQTCVVHYTGMLQNGKKF--DSSRDRNKPFKFRIGKQEVIKGFEEGAA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LT  P+ A+G+        V+PPN+T+ ++VEL++ E
Sbjct: 65  QMSLGQRAKLTCTPDVAYGATGHP---GVIPPNATLIFDVELLNLE 107

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +GE     IP 
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           EL YGE G+PP IP  ATL F+VELL
Sbjct: 69  ELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344
           +  +G V+ +   GKL+DGT F       + Q F F     QVI G D+ ++ M + E  
Sbjct: 5   KSRKGDVLHMHYTGKLEDGTEF--DSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR 62
Query: 345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            L I  E  +G   +  +   +P  +T+ +EVEL+  E+  E
Sbjct: 63  KLVIPSELGYGERGAPPK---IPGGATLVFEVELLKIERRTE 101

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDY 464
           GNT FK+  +  A K+Y K ++Y+E   +   D +  + + + ++C LN  ACKLK+ D+
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           + A   C + L++D  N KALYRRAQ +  + + D A  D+KKA EI P+++ ++ E   
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349
Query: 525 LKEKMKEYNKKEAKFYGNMFA 545
           +K+K+K    KE   Y  MFA
Sbjct: 350 VKQKIKAQKDKEKAAYAKMFA 370

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSSR+R+ PFKF LGQG VIKGWDI + +M K E  
Sbjct: 31  NAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKC 90
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
              +  +  YGE G   +IP N+ L F++EL+S+
Sbjct: 91  SVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 266 ITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKT 322
           +T+D  V+K IL++G+G E   P +G  V V  +GKL+  G VF      E    F+F  
Sbjct: 11  LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVF--DSSRERNVPFKFHL 68
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +VI G D  V +M KNE   + +  +Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES---IPGNSVLIFEIELISF 124

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+       +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLG---YGAGGAGGVIPPNATLVFEVELL 111

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++       +  + P  F +G G VI+GWD  + TM K
Sbjct: 17  PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 106 GENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPNA L F+VEL+
Sbjct: 77  GEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF           +  +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 116

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
            P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW   ++ M++G+    
Sbjct: 52  APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWTEALQLMREGDRWRL 109
Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            IP +LAYG +G    IPP + L+FDVEL+S
Sbjct: 110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRST-------PFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++   S+       P  F +G G VI+GWD  + TM K
Sbjct: 20  PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPN  L F+VEL+
Sbjct: 80  GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK    
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDID 119

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 53  PE--NGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDI------GIKTMK 104
           PE   G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD       GI  M 
Sbjct: 25  PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML 84
Query: 105 KGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
            G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 85  TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE---EKKQAKALKVACNLNNAACKLKL 461
           +GN  FK  +   A  +Y++A+ +  +   + D+   +KK  K ++++CNLN A C  K 
Sbjct: 44  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK--KNIEISCNLNLATCYNKN 101
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           KDY +A    +KVL +D  NVKALY+   A +    L+ A+ ++ KA  ++P+N D++  
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAK 546
           Y+    K+KE  KK+   +G MF K
Sbjct: 162 YELCVNKLKEARKKDKLTFGGMFDK 186

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 12/112 (10%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +GN LFK G Y  A   Y +A+         G +   Q +A+    + N AAC LKL+DY
Sbjct: 34  EGNELFKCGDYGGALAAYTQAL---------GLDATPQDQAV---LHRNRAACHLKLEDY 81
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
            +AE   +K ++ D  +VKALYRR+QA  ++  LD A  D+++ + ++P N+
Sbjct: 82  DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 54  ENGDEVEVHYTGTL-LDGTQFDSSR--DRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + GD + VHY G L  DG+ F S+   +   P  FTLG    +KGWD G+K M  GE   
Sbjct: 30  KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPP L YG+ G    IPP +TL F+++LL
Sbjct: 90  LIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 59  VEVHYTGTLLDGTQ-FDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
           V V Y+G L    + FDS+  R TP    LG+   + G ++G+ +M++GE A F   P  
Sbjct: 47  VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 118 AYGESGSPPTIPPNATLQFDVELLSW 143
           AYG  G PP IPPN T+ F++ELL +
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELLDF 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ------DGTVFVKKGHSEEEQL 317
           +I+ D+ V+K +++EG G    P+  A V VK  G L+      D   F K         
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRL----- 73
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
              K  E+  + G++  +++M++ E+A     P YA+G+        ++PPN+TV +E+E
Sbjct: 74  --MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIE 128
Query: 378 LVSF 381
           L+ F
Sbjct: 129 LLDF 132

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 121 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 178
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 45  PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 102
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 103 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y +A + Y+KA++    + S                NL NA    K  DY+
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNNAS-------------AWYNLGNAY--YKQGDYQ 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+LD  N KA YRR  AY +  D   A  D +KALE+DP+N   K      
Sbjct: 61  KAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+    VEV Y G L DG  FD S   + P  F L   +VI GW   ++ M  G      
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP + AYG  G+   I P   L F++EL++
Sbjct: 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 28  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 83
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 84  ADSKYCYGPQGRSPYIPPHAALCLEVTL 111

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 15  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 68
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 69  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 111

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 30  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 85
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 86  ADSKYCYGPQGRSPYIPPHAALCLEVTL 113

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 17  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 70
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 71  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D +        A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPN-------NAEAW---YNLGNA--YYKQGDYD 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+LD  N +A Y    AY +  D D A    +KALE+DP+N + K      
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 388 WDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQAK 444
           W M              +GN L++ G    A+ +Y  A+   K ++     G  E  Q  
Sbjct: 3   WAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLD 62
Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                  LN   CKL +++Y +    C+ +L+    NVKA ++R +A+  + +   A+ D
Sbjct: 63  QQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD 122
Query: 505 IKKALEIDPDNRD-VKLEYKTLKEKMKEYNKKE-AKFYG 541
             K LE+DP     V  E + L+ ++++ ++++ A+F G
Sbjct: 123 FAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRG 161

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +GN  FK G Y  A + Y +AVK         D E     +       N AAC  KL ++
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYS-------NRAACLTKLMEF 63
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
           ++A   C   + LDS+ +K   R+A   + M +   A+   + AL++DP N + +
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 34  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 89
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 90  ADSKYCYGPQGSRSPYIPPHAALCLEVTL 118

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 21  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 74
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 75  LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 118

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 60  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 115
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 116 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 144

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 47  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 100
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 101 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 144

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 72  QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG--SPPTI 128
           +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELAYG+ G  S P +
Sbjct: 84  KFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV 143
Query: 129 PPNATLQFDVELLSW 143
           PP A L ++VE++ +
Sbjct: 144 PPMADLLYEVEVIGF 158

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP    +           +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVDSE-----------AEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            E       VPP + + YEVE++ F++ KE
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 405 QGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
           +GN L++ G    A+ +Y  A+   K ++     G  E  Q         LN   CKL +
Sbjct: 14  EGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVV 73
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           ++Y +    C+ +L+    NVKA ++R +A+  + +   A+ D  K LE+DP
Sbjct: 74  EEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA++                ++ +   NL NA    K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE-------------LDPRSAEAWYNLGNA--YYKQGDYD 52
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           NL NA    K  DY +A +   K L+LD  N +A Y    AY +  D D A    +KALE
Sbjct: 14  NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 511 IDPDNRDVKLEYKTLKEKM 529
           +DP+N + K      K+K 
Sbjct: 72  LDPNNAEAKQNLGNAKQKQ 90

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----GDEEKKQAKALKVACNLNNAACKL 459
           +GN LF    Y  A   Y  A+  +  DT       G+ E  +     +    N + C L
Sbjct: 17  KGNELFVQKDYKEAIDAYRDALTRL--DTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74
Query: 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-V 518
            + D  +AE+  ++VL  +  N KAL+RRA+A I    LD AE D+K  L   P     V
Sbjct: 75  NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134
Query: 519 KLEYKTLKEKMKEYNKKEAKFYGNMF 544
             E K + E+  E        Y  MF
Sbjct: 135 AREMKIVTERRAEKKADSRVTYSKMF 160

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA++               A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELY----------PNNAEAW---YNLGNA--YYKQGDYD 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+L   N +A Y    AY +  D D A    +KALE+ P+N + K      
Sbjct: 61  EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Query: 526 KEK 528
           K+K
Sbjct: 121 KQK 123

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           QGN LF   KY  A+  Y +A+                   L      N A C LK++  
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQQP 59
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R
Sbjct: 60  EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           ++ ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   
Sbjct: 23  ESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTT 82
Query: 111 FTIPPELAYG 120
           F++ P+ A+G
Sbjct: 83  FSLEPDAAFG 92

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q N  FKA  Y  A K Y +A+            E   + A+      N +   L+ + Y
Sbjct: 12  QANDYFKAKDYENAIKFYSQAI------------ELNPSNAIYYG---NRSLAYLRTECY 56
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
             A    T+ ++LD + +K  YRRA + + +     A  D +  +++ P ++D K++Y+ 
Sbjct: 57  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
Query: 525 LKEKMKE 531
             + +K+
Sbjct: 117 CNKIVKQ 123

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           QGN LF   KY  A+  Y +A+                   L      N A C LK++  
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQQP 54
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R
Sbjct: 55  EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	562
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-160
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-57
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-125
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-99
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-18
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	9e-95
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-58
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	5e-29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-30
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-20
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	1e-66
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-26
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-66
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-63
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	7e-27
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-19
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-63
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	1e-24
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-17
2ppn_A	107	FK506-binding protein 1A; high resolution protein	4e-63
2ppn_A	107	FK506-binding protein 1A; high resolution protein	2e-25
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-17
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-61
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-23
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	8e-16
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-61
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-25
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-18
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-59
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-23
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	7e-16
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-58
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-26
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	5e-17
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-58
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	6e-21
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-12
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-58
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	8e-57
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-26
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	8e-56
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	8e-32
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-25
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-55
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-29
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-25
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-55
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-19
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	5e-12
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	9e-53
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	6e-28
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	7e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-52
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	9e-16
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	6e-52
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-29
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-22
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-51
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	4e-19
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	7e-14
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	4e-51
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	5e-16
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	9e-12
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-49
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	7e-18
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-10
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-48
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	5e-39
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-14
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	5e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-38
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-37
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	6e-13
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	4e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	5e-37
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-14
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	8e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-22
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-10
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	4e-19
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	1e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	3e-16
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-06
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-16
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	1e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	7e-16
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	8e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-14
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	4e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-04
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	3e-14
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	2e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	6e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	7e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	8e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-04

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  460 bits (1184), Expect = e-160
 Identities = 289/358 (80%), Positives = 318/358 (88%), Gaps = 2/358 (0%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG QGLKKKL+KEGEGWDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           +DI KDGGI KKILKEG+KWENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH +E++ FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEA 299

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  194 bits (495), Expect = 3e-57
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
             G+ KK+LKEGE W+ P+  DEV V+Y   L DG        + D  +F +  G     
Sbjct: 10  KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT 267
             + +KTMKKGE  L  + P+  +GE G         +P NATLQ  +EL+SW +V +I 
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSP-----PTIPANATLQFDVELLSWTSVRDIA 124

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D  + KKILKEGD +E P +   V VK   +L+DGTV        + +  EF   +  +
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVV------SKSEGVEFTVKDGHL 178

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA--VVPPNSTVHYEVELVSFEKEK 385
              L +AV TMKK E  LL + P+Y FG            VPPN+++  ++ELVS++   
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238

Query: 386 ESWDMNTEEK 395
           E  D     K
Sbjct: 239 EIGDDKKILK 248

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  374 bits (960), Expect = e-125
 Identities = 140/413 (33%), Positives = 228/413 (55%), Gaps = 19/413 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDG 202
               KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G
Sbjct: 25  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262
                    V TMK+GE   L  KP+Y +G  G         +P NATL   +EL+ +K 
Sbjct: 85  QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS-----LPKIPSNATLFFEIELLDFKG 139

Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT 322
             ++ +D  +I++  ++G+G+  PNEGA V++ L G+   G +F  +  +     F    
Sbjct: 140 -EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCRDVA-----FTVGE 192

Query: 323 DEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            E+  +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SF
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSF 250

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK 310

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
            +++  +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           + D +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K  E    E
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKE 423

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  211 bits (539), Expect = 2e-62
 Identities = 100/262 (38%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMK+GE       PE AYG +GS P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 128 IPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM 187
           IP NATL F++ELL +   +D+ +DGGII++  ++GE + NP +   V ++ E R    M
Sbjct: 122 IPSNATLFFEIELLDFK-GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRM 180

Query: 188 VVGKADGVEFTVKDGHF---CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244
              +   V FTV +G        + KA++ M++ E+ +L + P+YGFGE GK     +  
Sbjct: 181 FDCR--DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFG 234

Query: 245 VPPNATLQIALELVSWKTVSEI 266
           + PNA L   + L S++   E 
Sbjct: 235 IEPNAELIYEVTLKSFEKAKES 256

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  304 bits (781), Expect = e-99
 Identities = 110/294 (37%), Positives = 182/294 (61%), Gaps = 13/294 (4%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70

Query: 324 EEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E +   +  GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKS 128

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248

Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++ E +   
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKA 302

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  100 bits (251), Expect = 2e-23
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---N 91
            + G+ +++   GEG+  P  G  VEV   G   D   FD         +F +G+G   +
Sbjct: 23  EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLD 76

Query: 92  VIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELLSWTSVKDI 149
           +  G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+ 
Sbjct: 77  LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 84.6 bits (209), Expect = 4e-18
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG---HF 204
            + +DGGII++I   GE +  P +   V V  E   +D +   +   + F + +G     
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDL 77

Query: 205 CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264
              L +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 133

Query: 265 EITD 268
           E  +
Sbjct: 134 ESWE 137

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  289 bits (742), Expect = 9e-95
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
            A EM A       AP+   G +     ++G+ K + +EG G + P  GD V VHYTG L
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
           LDGT+FDSS DR   F F LG+G VIK WDI I TMK GE    T  PE AYG +GSPP 
Sbjct: 82  LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK 141

Query: 128 IPPNATLQFDVELLS-WTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186
           IPPNATL F+VEL           +DGGII++I   GE +  P +   V V  E   +D 
Sbjct: 142 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK 201

Query: 187 MVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243
           +   +   + F + +G        L +A++ M+KGE  ++ +KP Y FG  GK     + 
Sbjct: 202 LFDQR--ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KF 255

Query: 244 AVPPNATLQIALELVSWKTVSE 265
            +PPNA L+  L L S++   E
Sbjct: 256 QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  194 bits (495), Expect = 4e-58
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 35/283 (12%)

Query: 127 TIPPNATLQFDVELLSWTSVK------------DICKDGGIIKKILKEGEKWENPKDLDE 174
            + P  +     E+ +  S                 +D G++K I +EG   E P   D 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 175 VLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
           V V+Y   L DG      + + D   F +  G        A+ TMK GE   +  KP+Y 
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 132

Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVS-WKTVSEITDDKKVIKKILKEGDGFERPNEG 289
           +G  G         +PPNATL   +EL           +D  +I++I   G+G+ +PNEG
Sbjct: 133 YGSAGSP-----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEG 187

Query: 290 AVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVITMKKNEVALL 346
           A+V+V L G  +D  +F ++          F+  E + +D   GL+RA+  M+K E +++
Sbjct: 188 AIVEVALEGYYKDK-LFDQRE-------LRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 239

Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
            + P YAFGS   ++    +PPN+ + YE+ L SFEK KESW+
Sbjct: 240 YLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  115 bits (289), Expect = 5e-29
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 234 KGKSASGNEGAVPPNATLQIALELVSWKTVSE------------ITDDKKVIKKILKEGD 281
                  +   + P  +   A E+ + ++ ++               D+ V+K I +EG 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGT 62

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITM 338
           G E P  G  V V   G L DGT F   + +        F F   + +VI   D A+ TM
Sbjct: 63  GTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRK-----DKFSFDLGKGEVIKAWDIAIATM 117

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE 397
           K  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E  + + +      
Sbjct: 118 KVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRR 173

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  278 bits (711), Expect = 2e-89
 Identities = 101/345 (29%), Positives = 164/345 (47%), Gaps = 26/345 (7%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
              E  ++         E  +     EG VPP    +                D+KV K+
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQ-----EGNVPPKVDSEA------------EVLDEKVSKQ 54

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT-DEEQVIDGLDRA 334
           I+KEG G  +P++ +   +      ++     +    E++   E     E++ + GL   
Sbjct: 55  IIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQP-IELVLGKEKKELAGLAIG 112

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK---ESWDMN 391
           V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F++ K      DM 
Sbjct: 113 VASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKALKVA 449
            EE+I AA ++K  GN+LFK  K   A ++YE A+ Y+  D  F    + +  A A+K  
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
           C+LN AAC +KLK Y +A   C  VL  + +N KAL+RR +A  ++  +D A  D +KA 
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           +  PD++ ++ E + L E+ K   +K+ + Y  +F    E     
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKS 336

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  120 bits (301), Expect = 3e-30
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 2   DEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEV 61
            E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       +
Sbjct: 14  QESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFL 72

Query: 62  HYTGTLLDGTQ-FDSSRDRSTPFKFTLGQ-GNVIKGWDIGIKTMKKGENAVFTIPPELAY 119
           HY     +    F+ +     P +  LG+    + G  IG+ +MK GE A+  +  ELAY
Sbjct: 73  HYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAY 132

Query: 120 GESGSPP--TIPPNATLQFDVELLSWTSVK 147
           G+ G+     +PP A L ++VE++ +   K
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETK 162

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 104 KKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEG 163
              E+ + T    + + E      +PP    + +V             D  + K+I+KEG
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL------------DEKVSKQIIKEG 59

Query: 164 EKWENPKDLDEVLVNYEARLEDGMVV---GKADGVEFTV---KDGHFCPTLAKAVKTMKK 217
                P       ++Y A  ++          +     +   K+      LA  V +MK 
Sbjct: 60  H-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKS 118

Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271
           GE+ L+ V  +  +G++G  +      VPP A L   +E++ +    E      
Sbjct: 119 GERALVHVGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKEGKARSD 169

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  211 bits (539), Expect = 1e-66
 Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 29  GEEKEI---GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GE+ +I    + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F
Sbjct: 3   GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
            LG+GNVIKGWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W S
Sbjct: 63  NLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-S 121

Query: 146 VKDIC--KDGGIIK 157
            +DI   +DG I++
Sbjct: 122 AEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  102 bits (257), Expect = 3e-26
 Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D  V+K I KEG G  +P  G  VKV  +G L++GT F     +G       F F  
Sbjct: 10  PKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRG-----DQFSFNL 64

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
               VI G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  + 
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS 121

Query: 383 KEKESWDMN 391
            E  S D +
Sbjct: 122 AEDISPDRD 130

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G        + D   F +  G+   
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TM KGE     ++  YG+G+ G   S     +P  ATL   +EL  W      
Sbjct: 72  GWDLGVATMTKGEVAEFTIRSDYGYGDAG---SP--PKIPGGATLIFEVELFEWSAEDIS 126

Query: 267 TDDKKVIKK 275
            D    I +
Sbjct: 127 PDRDGTILR 135

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  213 bits (543), Expect = 3e-66
 Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 2/194 (1%)

Query: 363 LAVVPPNSTVHYEVELVSFEK-EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKR 421
           +     +       E + F+  +K  +D   EEK+++A   KE+GN  FK  +   A  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVK 60

Query: 422 YEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           Y++A+ +  +   + D+    + K ++++CNLN A C  K KDY +A    +KVL +D  
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALY+   A +    L+ A+ ++ KA  ++P+N D++  Y+    K+KE  KK+   +
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTF 180

Query: 541 GNMFAKMTEPKEAE 554
           G MF K    +E +
Sbjct: 181 GGMFDKGPLYEEKK 194

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  203 bits (518), Expect = 1e-63
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 22  DAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRS 80
            A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+
Sbjct: 3   PATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN 62

Query: 81  TPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVEL 140
            PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P IP NATL F++EL
Sbjct: 63  EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIEL 122

Query: 141 LSW 143
           L +
Sbjct: 123 LDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  104 bits (262), Expect = 7e-27
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 15  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 69

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S      +P N+T+ +E+EL+ F+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126

Query: 383 KE 384
            E
Sbjct: 127 GE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 77  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 126

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  202 bits (516), Expect = 2e-63
 Identities = 56/111 (50%), Positives = 70/111 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL  
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +   V    +  GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRG-----SPFQC 54

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
                QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G      V +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+  
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRG---FP--GLIPPNSTLVFDVELLKV 112

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  201 bits (513), Expect = 4e-63
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =   99 bits (250), Expect = 2e-25
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           V  + +  GDG   P  G    V   G L+DG  F     +      + F+F   +++VI
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRN-----KPFKFMLGKQEVI 56

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            G +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 57  RGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG        +    +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G  G       G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATG---HP--GIIPPHATLVFDVELLKLE 107

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  197 bits (504), Expect = 2e-61
 Identities = 63/105 (60%), Positives = 75/105 (71%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
            L+KK++  G+G   P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD
Sbjct: 25  QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWD 84

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+ TM  GE A+FTIP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 85  QGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
           +T    +   ++ KK+L  GDG  +P  G  V V   G+  DG  F     +G     + 
Sbjct: 15  QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRG-----KP 69

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F+F     +VI G D+ V TM   E AL TI  + A+G         V+PP +T+ +EVE
Sbjct: 70  FQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP---PVIPPKATLVFEVE 126

Query: 378 LVS 380
           L++
Sbjct: 127 LLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
              + KK+L  G+    P+   +V V+Y+ R  DG        +    +FT+  G     
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V TM  GEK L  +  Q  +GE+G         +PP ATL   +EL++
Sbjct: 83  WDQGVATMTLGEKALFTIPYQLAYGERG---YP--PVIPPKATLVFEVELLA 129

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  197 bits (502), Expect = 6e-61
 Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P 
Sbjct: 66  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK 125

Query: 128 IPPNATLQFDVELLSW 143
           IP NATL F++ELL +
Sbjct: 126 IPSNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 99.7 bits (249), Expect = 6e-25
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 31  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 85

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 142

Query: 383 KE 384
            E
Sbjct: 143 GE 144

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 142

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  191 bits (488), Expect = 4e-59
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 26  MKVGEEKE----IGNQGLKKKLVKEGEGWD--TPENGDEVEVHYTGTLLD-GTQFDSSRD 78
           M   +E E      + G+ K ++K+G+  +   P+ G+EV VHY G L   G  FDSS D
Sbjct: 1   MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60

Query: 79  RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDV 138
           R+ PFKF L QG VIKGWDI + +M+K E  +  I     YG+ G   +IP N+ L F++
Sbjct: 61  RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120

Query: 139 ELLSWTSVK 147
           ELLS+  ++
Sbjct: 121 ELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 93.9 bits (234), Expect = 4e-23
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 14/127 (11%)

Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVF---VKKGHSEEEQLF 318
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF     +        F
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN-----VPF 65

Query: 319 EFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           +F  ++ +VI G D  V +M+KNE  L+ I   Y +G          +P NS + +E+EL
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIEL 122

Query: 379 VSFEKEK 385
           +SF + +
Sbjct: 123 LSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 73.5 bits (181), Expect = 7e-16
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 12/124 (9%)

Query: 147 KDICKDGGIIKKILKEGEKWE--NPKDLDEVLVNYEARLED-GMV----VGKADGVEFTV 199
            ++  DGG+IK ILK+G++ E   PK  +EV V+Y  +LE  G V      +    +F +
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL 69

Query: 200 KDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + G         V +M+K EK L+ ++  YG+G++G    G   ++P N+ L   +EL+S
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG---CG--ESIPGNSVLLFEIELLS 124

Query: 260 WKTV 263
           ++ +
Sbjct: 125 FREL 128

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  189 bits (483), Expect = 2e-58
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 20  PDDAPMMKVGEEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSS 76
           P  +   ++ +      G++G+ K +++EG G D       V V Y+G L      FDS+
Sbjct: 7   PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSN 65

Query: 77  RDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
             R TP    LG+   + G ++G+ +M++GE A F   P  AYG  G PP IPPN T+ F
Sbjct: 66  YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLF 125

Query: 137 DVELLSWT 144
           ++ELL + 
Sbjct: 126 EIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  103 bits (260), Expect = 1e-26
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 242 EGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ 301
           EG   P  +L   L     + + +I+ D+ V+K +++EG G +     A V VK  G L+
Sbjct: 2   EGDDAPGQSLYERLS----QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLE 56

Query: 302 D-GTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA 357
                F     +           K  E+  + G++  +++M++ E+A     P YA+G+ 
Sbjct: 57  HMDRPFDSNYFRK-----TPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTL 111

Query: 358 ESQQELAVVPPNSTVHYEVELVSF 381
                  ++PPN+TV +E+EL+ F
Sbjct: 112 GCP---PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLED-GMV----VGKADGVEFTVKDG 202
           DI  D G++K +++EG   +       VLV Y   LE           +       + + 
Sbjct: 21  DISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED 79

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                +   + +M++GE      KP Y +G  G         +PPN T+   +EL+ +
Sbjct: 80  ITLWGMELGLLSMRRGELARFLFKPNYAYGTLG---CP--PLIPPNTTVLFEIELLDF 132

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  188 bits (479), Expect = 4e-58
 Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 47  GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106
           G        GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +G
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59

Query: 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDI 149
           E     IP EL YGE G+PP IP  ATL F+VELL      ++
Sbjct: 60  EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 86.8 bits (216), Expect = 6e-21
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 280 GDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           G    +  +G V+ +   GKL+DGT F   + +      Q F F     QVI G D+ ++
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQN-----QPFVFSLGTGQVIKGWDQGLL 54

Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            M + E   L I  E  +G   +      +P  +T+ +EVEL+  E+  E
Sbjct: 55  GMCEGEKRKLVIPSELGYGERGAP---PKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
              +  D + ++Y  +LEDG      + +     F++  G       + +  M +GEK  
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
           L +  + G+GE+G   +     +P  ATL   +EL+  +  +E+
Sbjct: 64  LVIPSELGYGERG---AP--PKIPGGATLVFEVELLKIERRTEL 102

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  190 bits (484), Expect = 4e-58
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---DTSFGDEEKKQAKAL 446
              ++K+++    +++GN LF    Y  A   Y  A+  ++        G+ E  +    
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
            +    N + C L + D  +AE+  ++VL  +  N KAL+RRA+A I    LD AE D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 507 KALEIDPDNRD-VKLEYKTLKEKMKEYNKKEAKFYGNMF 544
             L   P     V  E K + E+  E        Y  MF
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  185 bits (471), Expect = 8e-57
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTL 87
           G     K ++K+G+  + P+ GD V   YTGTL DGT FD++       +  + P  F +
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLSW 143
           G G VI+GWD  + TM KGE A   I PE AYG+ G P   IPPN  L F+VEL+  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  101 bits (255), Expect = 4e-26
 Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTD 323
             K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK  
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV-----------VGKADGVEFTVK 200
                K ILK+G+K   PK  D V   Y   L DG V              A  + F V 
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 201 DGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
            G       +A+ TM KGEK  L ++P++ +G+KG+        +PPN  L   +ELV  
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD----AKIPPNTKLIFEVELVDI 118

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  183 bits (466), Expect = 8e-56
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 29  GEEKE--IGNQGLKKKLVKEG-EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GEE    +GN  L+KK +  G  G   P  G  V VH   +L +GT+            F
Sbjct: 7   GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPTIPPNATLQFDVELLSWT 144
           TLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P IPP+A L  +V L +  
Sbjct: 63  TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 122

Query: 145 SVKDICKDG 153
              D+   G
Sbjct: 123 DRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  118 bits (298), Expect = 8e-32
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 265 EITDDKKVIKKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G  G  RP +G VV V L   L++GT        +EE    F   
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 65

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  VI  LD +V  M   E A++T   +Y +G   S+     +PP++ +  EV L +   
Sbjct: 66  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVD 123

Query: 384 EKE 386
             +
Sbjct: 124 RPD 126

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  101 bits (253), Expect = 1e-25
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +     ++
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDRPDL 127

Query: 267 TDD 269
              
Sbjct: 128 EMS 130

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  181 bits (462), Expect = 2e-55
 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 35  GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVI 93
           GN  L+KK +  G      P  G  V VH   +L +GT+            FTLG  +VI
Sbjct: 11  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVI 66

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144
           +  D+ +  M  GE A+ T   +  YG  G  P IPP+A L  +V L +  
Sbjct: 67  QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  111 bits (281), Expect = 1e-29
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G     RP +G VV V L   L++GT        +EE    F   
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 61

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  VI  LD +V  M   E A++T   +Y +G          +PP++ +  EV L +  
Sbjct: 62  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 99.2 bits (248), Expect = 4e-25
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 148 DICKDGGIIKKILKEGE-KWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
            L  +V  M  GE  ++    +Y +G +G+        +PP+A L + + L +  
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTLKTAV 117

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  181 bits (462), Expect = 3e-55
 Identities = 58/105 (55%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GLK + + EG G      G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD
Sbjct: 29  GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPP+L YG  G+   IPPNATL F+VELL 
Sbjct: 88  EGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
             ++ +T +  +  + L EG G      G  V V   G L DG  F     +        
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DP 72

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F F      VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVE
Sbjct: 73  FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVE 129

Query: 378 LVS 380
           L+ 
Sbjct: 130 LLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  + L EG      +    V V+Y   L DG        + D   F +  G     
Sbjct: 27  ESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 85

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V+ MK G    L + PQ G+G +G   +G  G +PPNATL   +EL+ 
Sbjct: 86  WDEGVQGMKVGGVRRLTIPPQLGYGARG---AG--GVIPPNATLVFEVELLD 132

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  176 bits (449), Expect = 9e-53
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
             E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       
Sbjct: 13  DQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCF 71

Query: 61  VHYTGTLLDGT-QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           +HY     +   +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELA
Sbjct: 72  LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131

Query: 119 YGESG--SPPTIPPNATLQFDVELLSWTSVKDI 149
           YG+ G  S P +PP A L ++VE++ +   K+ 
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  109 bits (273), Expect = 6e-28
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VF---VKKGHSEEEQLFEFK- 321
             D+KV K+I+KEG G  +P++ +   +      ++    F     +      Q  E   
Sbjct: 46  VLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQ-----QPIELVL 99

Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
             E++ + GL   V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYG-KEGNFSFPNVPPMADLLYEVEVIGF 158

Query: 382 EKEKES---WDMNTEEKIEAA 399
           ++ KE     DM  EE+I AA
Sbjct: 159 DETKEGKARSDMTVEERIGAA 179

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 86.4 bits (214), Expect = 7e-20
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 101 KTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160
                 E+ + T    + + E      +PP    + +V             D  + K+I+
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV------------LDEKVSKQII 56

Query: 161 KEGEKWENPKDLDEVLVNYEARLEDGMVV-----GKADGVEFTV-KDGHFCPTLAKAVKT 214
           KEG     P       ++Y A  ++          +   +E  + K+      LA  V +
Sbjct: 57  KEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115

Query: 215 MKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD 268
           MK GE+ L+ V  +  +G++G   + +   VPP A L   +E++ +    E   
Sbjct: 116 MKSGERALVHVGWELAYGKEG---NFSFPNVPPMADLLYEVEVIGFDETKEGKA 166

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  176 bits (448), Expect = 3e-52
 Identities = 61/128 (47%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 15  ADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFD 74
            D D+ +       G        GLK + + EG G      G  V VHYTG L DG +FD
Sbjct: 82  EDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFD 140

Query: 75  SSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATL 134
           SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP+L YG  G+   IPPNATL
Sbjct: 141 SSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATL 200

Query: 135 QFDVELLS 142
            F+VELL 
Sbjct: 201 VFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 87.2 bits (216), Expect = 8e-20
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
           K+  K + +++  Y         +  +  +  N  ++   E +   TV  +T +  +  +
Sbjct: 52  KRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTV--VTTESGLKYE 109

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLD 332
            L EG G      G  V V   G L DG  F     +        F F      VI G D
Sbjct: 110 DLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DPFAFVLGGGMVIKGWD 163

Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+ 
Sbjct: 164 EGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 78  DRSTPFKFTLGQGNVIKGWDIGIKTM-KKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
           D S+   F + +   ++           K  +++  +   +      +P  +        
Sbjct: 28  DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87

Query: 137 DVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKA 192
           +           +  + G+  + L EG   E  +    V V+Y   L DG        + 
Sbjct: 88  EAHREQIGGSTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRN 146

Query: 193 DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQ 252
           D   F +  G       + V+ MK G    L + PQ G+G +G +     G +PPNATL 
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA-----GVIPPNATLV 201

Query: 253 IALELVS 259
             +EL+ 
Sbjct: 202 FEVELLD 208

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  173 bits (441), Expect = 6e-52
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 10  ANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTL 67
           A E  A M+ P+ AP     E  +I GN  L+KK +  G      P  G  V VH   +L
Sbjct: 16  AREFLAAME-PEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PP 126
            +GT+            FTLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P
Sbjct: 75  ENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP 130

Query: 127 TIPPNATLQFDVELLSWTSVK 147
            IPP+A L  +V L +   ++
Sbjct: 131 YIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  112 bits (283), Expect = 2e-29
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-D 281
           +   P     + G  A     A+ P      A E   W    +I  +  + KK L  G  
Sbjct: 1   MGQPPAEEAEQPGALAREFLAAMEPEPAPAPAPE--EWL---DILGNGLLRKKTLVPGPP 55

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
           G  RP +G VV V L   L++GT        +EE    F   +  VI  LD +V  M   
Sbjct: 56  GSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLGDCDVIQALDLSVPLMDVG 109

Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E A++T   +Y +G   S+     +PP++ +  EV L +    +     +
Sbjct: 110 ETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +   +  
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDLEH 152

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  172 bits (437), Expect = 1e-51
 Identities = 46/128 (35%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
               E  +   GL       G G      G  ++ HY G L +G  FDSS +R  P  F 
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60

Query: 87  LGQGNVIKGWDIGI------KTMKKGENAVFTIPPELAYGESG-----SPPTIPPNATLQ 135
           +G G VIKGWD GI        M  G      IPPELAYG+ G         IPP + L 
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 136 FDVELLSW 143
           FD+E +  
Sbjct: 121 FDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           +       G G     +G ++K   +GKL++G VF     +G     +   F+    +VI
Sbjct: 14  LAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRG-----KPLTFRIGVGEVI 67

Query: 329 DGLDRAVI------TMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELVS 380
            G D+ ++       M       L I PE A+G   A  +    ++PP S + +++E + 
Sbjct: 68  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP- 206
             G+       G           +  +Y  +LE+G V      +   + F +  G     
Sbjct: 11  PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 69

Query: 207 -----TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                  +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +  
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  172 bits (437), Expect = 4e-51
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 19/148 (12%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW 
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWT 95

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS--------------- 140

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLED 185
             +K+G K    +++DE+L   E   ED
Sbjct: 141 --IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           + +  G G   P      +V   G+L+DGTVF    ++G     +   F+ +  +VI G 
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERG-----KPTTFRPN--EVIKGW 94

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
             A+  M++ +   L I  + A+G         ++PP S + ++VEL+S +   +     
Sbjct: 95  TEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRTAE 151

Query: 392 TEEKIEAAGKKKEQ 405
             ++I    ++  +
Sbjct: 152 EVDEILRKAEEDRE 165

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ + +  G     P   D+  V+Y  RL DG V      +     F            
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWT 95

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS------WKTV 263
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S       +T 
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 150

Query: 264 SEITDDKKVIKKILKE 279
            E+ +  +  ++  ++
Sbjct: 151 EEVDEILRKAEEDRED 166

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  165 bits (420), Expect = 3e-49
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 38  GLKKKLVKEGEGW-DTPENGDEVEVHYTGTL-LDGTQFDSS--RDRSTPFKFTLGQGNVI 93
            +K +++++        + GD + VHY G L  DG+ F S+   +   P  FTLG    +
Sbjct: 13  EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           KGWD G+K M  GE     IPP L YG+ G    IPP +TL F+++LL 
Sbjct: 73  KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 260 WKTVSEITDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQL 317
           ++++  +  + +V  ++L++     R    G ++ V   G L+ DG++F         Q 
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
             F     + + G D+ +  M   E   L I P   +G     +    +PP ST+ + ++
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGK----EGKGKIPPESTLIFNID 117

Query: 378 LVSFEK 383
           L+    
Sbjct: 118 LLEIRN 123

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 143 WTSVKDICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLE-DGMV----VGKADG-- 194
           + S+  +  +  +  ++L++        K  D +LV+YE  LE DG +        +G  
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA 254
           + FT+          + +K M  GEK  L + P  G+G++GK      G +PP +TL   
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK------GKIPPESTLIFN 115

Query: 255 LELVSWKTV 263
           ++L+  +  
Sbjct: 116 IDLLEIRNG 124

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  171 bits (435), Expect = 2e-48
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
                  F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E   
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257

Query: 434 SFGDEEKKQA-KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492
           +  ++      + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW 317

Query: 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545
             + + D A  D+KKA EI P+++ ++ E   +K+K+K    KE   Y  MFA
Sbjct: 318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score =  141 bits (357), Expect = 5e-39
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F + Q  VI GW 
Sbjct: 107 GLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWT 163

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      +P  LAYG       I PN TL F + L+S
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           K++  G+G  +P +   V V+  G+L DGTVF    K G     +   F+    QVI G 
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTG-----KPATFQVS--QVIPGW 162

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 211

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVK 213
           K++  G     P   D V V Y  RL DG V            F V      P   +A++
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQ 167

Query: 214 TMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            M  G    + V     +G +        G + PN TL   + L+S
Sbjct: 168 LMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLIS 208

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  137 bits (346), Expect = 2e-38
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 12/141 (8%)

Query: 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV 448
                    +  + +++GN LFK G Y  A   Y +A   +  D +  D         + 
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQD---------QA 65

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
             + N AAC LKL+DY +AE   +K ++ D  +VKALYRR+QA  ++  LD A  D+++ 
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

Query: 509 LEIDPDNRDVKLEYKTLKEKM 529
           + ++P N+  +   + +    
Sbjct: 126 VSLEPKNKVFQEALRNISGPS 146

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score =  136 bits (345), Expect = 2e-37
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 178

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL 
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++++ G G E P +   V V   G L DG  F     +G     +   F+ D   VI G 
Sbjct: 126 QVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRG-----EPLSFRLD--GVIPGW 177

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
              +  +KK     L I PE A+G A        +PPNST+ ++VEL+  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ ++++ G+  E PKD D V+VNY+  L DG        + + + F +      P   
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + +K +KKG K+ L + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 224

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score =  136 bits (343), Expect = 5e-37
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G+    +  G G   P+    VEV Y G L DG  FD S     P  F L    VI GW 
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      IP + AYG  G+   I P   L F++EL++
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
             L  G G  +P+    V+V+ +G+L DG +F +       Q   F+ D   VI G   A
Sbjct: 122 TELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQST-----QPQWFRLD--SVISGWTSA 173

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  M       L I  + A+G+   +    ++ P + + +E+EL++  +
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGA---EGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAV 212
           GI+   L  G     P     V V Y  RL DG +  ++     F +           A+
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRL--DSVISGWTSAL 174

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + M  G K  L +     +G +G         + P   L   +EL++
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  119 bits (300), Expect = 1e-31
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 15/170 (8%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA  Y  A K Y +A   IE +          A        
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQA---IELN-------PSNAIYYG---- 51

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
            N +   L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++
Sbjct: 52  -NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

Query: 512 DPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMSVDSK 561
            P ++D K++Y+   + +K+   + A         + +  + E M+++ +
Sbjct: 111 KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 160

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  108 bits (272), Expect = 3e-28
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           + +EE    A + K +GN   K   +  A   Y KA   IE + +        A      
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKA---IELNPAN-------AVYF--- 49

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
              N AA   KL +Y  A + C + + +D    KA  R   A   +     A    KKAL
Sbjct: 50  --CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 510 EIDPDNRDVKLEYKTLKEKMKE 531
           E+DPDN   K   K  + K++E
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  105 bits (263), Expect = 5e-27
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
                 ++    + A   K +GN  F+ G Y +A K Y +A   I+ +        K AK
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEA---IKRN-------PKDAK 51

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                   N AAC  KL +++ A K C + + L+   +K   R+A A   M D   A   
Sbjct: 52  LYS-----NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 106

Query: 505 IKKALEIDPDNRDVKLEYKTLKEKMK 530
            +KAL++D   ++    Y+       
Sbjct: 107 YQKALDLDSSCKEAADGYQRCMMAQY 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  105 bits (263), Expect = 6e-27
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
             K  +A + KEQGN LF   KY  A+  Y +A+        +                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YT 47

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N A C LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  + 
Sbjct: 48  NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 513 PDNRDVKLEY---KTLKEKMKEYNKKEAK 538
            + R    +         K K +N  E +
Sbjct: 108 KEQRLNFGDDIPSALRIAKKKRWNSIEER 136

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  103 bits (258), Expect = 2e-26
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +E   + KE+GN     G    A + Y +A   I+ D                    N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEA---IKLD-------PHNHVLYS-----NRS 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           A   K  DY++A +   K +DL     K   R+A A   +   + A+   ++ L+ + +N
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 516 RDVKLEYKTLKEK 528
             +K   + ++ +
Sbjct: 106 PQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  102 bits (257), Expect = 3e-26
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E A ++K +GN  FK G Y  A + Y +A   ++ D        + A         N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEA---VKRD-------PENAILYS-----NRAA 55

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           C  KL ++++A   C   + LDS+ +K   R+A   + M +   A+   + AL++DP N 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 517 DVKLEYKTLK 526
           + +   +   
Sbjct: 116 EAREGVRNCL 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  100 bits (250), Expect = 3e-25
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A + + +G   F    +  A K Y +    I+          + A+        N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---IKRA-------PEDARGYS-----NRAAAL 48

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            KL  + +A   C K ++ D   V+A  R+A A I + +   A   +  A   D +  + 
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

Query: 519 --KLEYKTLKEKMKE 531
               E   L  K  +
Sbjct: 109 SSAREIDQLYYKASQ 123

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  101 bits (253), Expect = 3e-25
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
            +      + K K +GN      +Y++A   Y +A   +                     
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQA---LSIAP-------------ANPI 46

Query: 451 NLNN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
            L+N AA       +++A +       +D +  KA  R   A   MAD   A+   +K +
Sbjct: 47  YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106

Query: 510 EIDPDNRD--VKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPM 556
           E + +     +K   +T K K++E N+       ++       + A  M
Sbjct: 107 EAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAGGM 155

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 97.3 bits (243), Expect = 4e-22
 Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S  +      ++      +  
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEY---TVRSK---ERI-- 278

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             C  K +   +A ++C++VL ++  NV AL  RA+AY+     D A  D + A E + +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 515 NRDVKLEYKTLKEKMKEYNKK 535
           ++ ++   +  +  +K+  K+
Sbjct: 339 DQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
            E G  L  AG+ A A  ++  A   ++ D            A         A   L + 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAA---VDGDPDN-------YIAY-----YRRATVFLAMG 51

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
             K A    TKV+ L      A  +R    ++   LD AE D KK L+ +P  ++     
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE---K 108

Query: 523 KTLKEKMKEYNKKEAKFYGNMFAKMTEPKEA 553
           +   + +K    +  +          +   A
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAA 139

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           K +   + + Q    F    Y  A    +K    +E            A+          
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKI---LEVCVWD-------AELR-----ELR 160

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A C +K  + ++A         L S N +A Y+ +  Y Q+ D +L+  ++++ L++D D
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEA 553
           ++     YK +K+  K               +     +A
Sbjct: 221 HKRCFAHYKQVKKLNKLIES------AEELIRDGRYTDA 253

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+ L K GK   A   ++K +K    +    + E +  KA ++    + A       DY 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            A     K+L++   + +    RA+ +I+  +   A  D+K A ++  DN +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 30/144 (20%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  GK   A     K    I     F         A      L      LK     
Sbjct: 44  ATVFLAMGKSKAALPDLTKV---IALKMDF-------TAAR-----LQRGHLLLKQGKLD 88

Query: 466 QAEKLCTKVLDLDSRNVKA---------------LYRRAQAYIQMADLDLAEFDIKKALE 510
           +AE    KVL  +    +                L  +A      AD   A   + K LE
Sbjct: 89  EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNK 534
           +   + +++        K  E  K
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRK 172

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 95.4 bits (237), Expect = 4e-22
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 15/141 (10%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+        +                 N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 518 VKLEYKTLKEKMKEYNKKEAK 538
              +      ++ +  +  + 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSI 128

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 95.1 bits (237), Expect = 5e-21
 Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 15/165 (9%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           ++ A + K Q N  FKA  Y  A K Y +A++    +  +                 N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
              L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++ P +
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 516 RDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMSVDS 560
           +D K++Y+   + +K+   + A         + +  + E M+++ 
Sbjct: 108 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 152

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + A K+KE GN  +K   +  A K Y+KA +    + ++                + N A
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------------ITNQA 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKA 508
           A   +  DY +  +LC K +++   N        KA  R   +Y +      A     K+
Sbjct: 46  AVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105

Query: 509 LEIDPDNRDVKLEYKTLKEKMKEYNK 534
           L       DV  + +  ++ +KE  +
Sbjct: 106 LAEHRTP-DVLKKCQQAEKILKEQER 130

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S             V      
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSI--------AEYTVRSKERI 301

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             C  K +   +A ++C++VL ++  NV AL  RA+AY+     D A  D + A E + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++ ++   +  +  +K+  K++   
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 7e-19
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
            + +    K  E G  L  AG+ A A  ++  A   ++ D                    
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDN-------------YIAY 63

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
              A   L +   K A    TKV+ L      A  +R    ++   LD AE D KK L+ 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 512 DPDNRDVKLEYKTLK--EKMKEYNKK 535
           +P   + K     L   ++M+    +
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQ 149

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 21/159 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           K +   + + Q    F +G Y  A    +K    +E            A+          
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWD-------AELR-----ELR 183

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A C +K  + ++A         L + N +A Y+ +  Y Q+ D +L+  ++++ L++D D
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEA 553
           ++     YK +K+  K               +     +A
Sbjct: 244 HKRCFAHYKQVKKLNKLIES------AEELIRDGRYTDA 276

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 24/112 (21%), Positives = 49/112 (43%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+ L K GK   A   ++K +K    +    + + +  K+ ++    + A       DY 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            A     K+L++   + +    RA+ +I+  +   A  D+K A ++  DN +
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 26/110 (23%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L     Y ++    EK                +  K L            L      
Sbjct: 10  GVDLGTENLYFQSMADVEKH--------------LELGKKL------------LAAGQLA 43

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A       +D D  N  A YRRA  ++ M     A  D+ K +++  D 
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85

Query: 114 PPELAYGE 121
            P+ A+G 
Sbjct: 86  EPDAAFGV 93

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
             + V V    KL DGT           +   F+  +  + +GL++ ++ +K  +    +
Sbjct: 27  SNSAVLVHFTLKLDDGTTAEST--RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84

Query: 348 IAPEYAFG 355
           + P+ AFG
Sbjct: 85  LEPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
             VLV++  +L+DG              F + D      L + +  +K G+K   +++P 
Sbjct: 29  SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88

Query: 229 YGFGE 233
             FG 
Sbjct: 89  AAFGV 93

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 24/136 (17%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
           +    +AA  +K+ GN  +K   + +A   Y+KA++    + +F                
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------- 44

Query: 452 LNN-AACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEF 503
            NN AA   + K + +  + C K +++            KA+ R   A+ +  DL LA  
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

Query: 504 DIKKALEIDPDNRDVK 519
              ++L    D   VK
Sbjct: 105 WFHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 22/120 (18%)

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496
           +     A A K   +L NAA   K KD+++A     K ++LD  N+     +A  Y +  
Sbjct: 2   NAMTDAAIAEK---DLGNAA--YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK 56

Query: 497 DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM---FAKMTEPKEA 553
                    +KA+E+  + R                    AK        F K  +   A
Sbjct: 57  KFAECVQFCEKAVEVGRETRADYKLI--------------AKAMSRAGNAFQKQNDLSLA 102

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
           +L + EKE +  +       E A + + +G   F    +  A K Y +    I+      
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM---IKRAPED- 172

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496
                 A+        N AA   KL  + +A   C K ++ D   V+A  R+A A I + 
Sbjct: 173 ------ARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221

Query: 497 DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           +   A   +  A   D +         + +E  + Y K  
Sbjct: 222 EYASALETLDAARTKDAEVN----NGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 28/170 (16%), Positives = 63/170 (37%), Gaps = 31/170 (18%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A K+K +GN  +KA ++  A + Y KA    E          K    L      N AA +
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKA---WELH--------KDITYL-----NNRAAAE 48

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---- 514
            +  +Y+ A       ++            ++++ ++ +      D+KK +E        
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 515 --NRDVKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEA 553
               D+  + +  ++++K+         ++A+     G  +   ++   A
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +  + G         +K    IEY      E                A    KL++ +
Sbjct: 79  SKSFARIGNAYHKLGDLKKT---IEYYQKSLTEH-------------RTADILTKLRNAE 122

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +  K       ++    +      + Y   +D   A     + ++  P++
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +    K+KEQGN+LFK G Y  A   Y++    I           +           N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQL---ITAQ-------PQNPVGYS-----NKA 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL-EIDPD 514
              +KL +Y QA ++C + L   S       R    Y ++     A   ++  + E+D  
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDEL 104

Query: 515 NRDVK 519
                
Sbjct: 105 PEGYD 109

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
            Q +  K      N+    K   Y++A     +++    +N      +A A I++ +   
Sbjct: 2   SQFEKQK---EQGNSL--FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQ 56

Query: 501 AEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKF 539
           A    ++ L              ++   +  +  +        + 
Sbjct: 57  AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 32/224 (14%)

Query: 346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405
                E   G +   +        +   +      FE++ +  + + + K + A   +  
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F       A +  +KA++              +  +      +  A       D  
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIEL-----------FPRVNSY-----IYMALIMADRNDST 287

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------V 518
           +      K L LDS N    Y R Q    + + D A  D  KA E+DP+N         +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 519 KLEYKTLKEKMKEYNK---------KEAKFYGNMFAKMTEPKEA 553
                   +    +++         +   F+  +     +  +A
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK + A   K++GN  F+  KY  A K Y  A++            K+           N
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDPVFY-----SN 44

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK-ALEID 512
            +AC + + D K+  ++ TK L+L     K L RRA A   +     A FD+   +L  D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 513 PDNRDVKLEYKTLKEKMKEYNKKEA 537
            ++  ++   +    K      KE 
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEK 129

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L     + +A K+Y+ A   IE +          A  +              ++++ 
Sbjct: 379 AEILTDKNDFDKALKQYDLA---IELENKLDGIYVGIAPLVG---KATLLTRNPTVENFI 432

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A  L  K   LD R+ +A    AQ  +Q  D+D A    +++ ++     +     + +
Sbjct: 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK---LQAI 489

Query: 526 KEKMKEYNKKEAKFYGNMFAKMTE 549
                   ++  +    +  K+ E
Sbjct: 490 TFAEAAKVQQRIRSDPVLAKKIQE 513

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 18/178 (10%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
              +  +          + F   K       Y+++    E D    +      K    + 
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDES---NEADKELMNGLSNLYKRSPESY 205

Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           +  + +     + +++      +   L  +   +L           D   A  DIKKA+E
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265

Query: 511 IDPD-----NR-DVKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEA 553
           + P          +  +     E    ++K        +  Y   G M   +    +A
Sbjct: 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F    Y +A K ++KA    E D        + A                +   + 
Sbjct: 311 GQMNFILQNYDQAGKDFDKA---KELDPENIFPYIQLACLAY------------RENKFD 355

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             E L ++         +     A+      D D A      A+E++   
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M+ G+     IP E AYG 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN 83

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV+
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 337 TMKKNEVALLTIAPEYAFG 355
            M+  +   + I  E A+G
Sbjct: 64  DMEVGDEKTVKIPAEKAYG 82

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 75.1 bits (185), Expect = 7e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 1/138 (0%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKY-IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
           ++ +   +AG+  +A   + + +   I+    +      +   +        A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           +Y +A     ++L     NV  L   A+  +       A    +K L+++ DN    +  
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 523 KTLKEKMKEYNKKEAKFY 540
                   E  KK+ +  
Sbjct: 129 GNYYYLTAEQEKKKLETD 146

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G+   A + YEK ++           E     A      L N    L  +  K
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQL----------EADNLAAN---IFLGNY-YYLTAEQEK 140

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +  +   K L   ++   A YR   + +     + A   ++K +   P   + +     +
Sbjct: 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199

Query: 526 KEKMKEYNK 534
               KE N+
Sbjct: 200 LRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 16/148 (10%)

Query: 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK 447
           W    +    ++    E      K   Y +A   Y++ ++                  L 
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----------APNNVDCL- 91

Query: 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI-K 506
                  A  ++     K A ++  K+L L++ N+ A       Y   A+ +  + +   
Sbjct: 92  ----EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNK 534
           K L      +  +      K     Y K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 16/99 (16%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR----------------AQAYIQM 495
           L   +  ++     QA     + + L+    +  Y                  A AY + 
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
            + D A    K+ L+  P+N D       ++    +   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 23/185 (12%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +        + K    ++  ++   A + K +GN  F A  +  A K Y+ A   IE D 
Sbjct: 3   HMNGEPDIAQLKG---LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA---IELDP 56

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +                  N +AC +   D ++  +  TK L++   + KAL RRA A  
Sbjct: 57  NEPV------------FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104

Query: 494 QMADLDLAEFDIKKALEIDPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
            + +   A FD+   L ++ D         LE    K+ MK  N+  +K  G     +  
Sbjct: 105 SLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163

Query: 550 PKEAE 554
                
Sbjct: 164 NTSLA 168

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 25/231 (10%)

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEA 398
              EV+ +  +  Y    A     L  +   +   Y V      K  + +          
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
              ++     L   G +         A        S          +      +  A   
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVL--LQESI--NLHPTPNSY-----IFLALTL 286

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD- 517
              ++ ++  K   K +DL+       Y R Q Y  + D   A+ D +KA  ++P+N   
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

Query: 518 ------VKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEA 553
                 +  +     E    +N+         +       +     +   A
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
              L   G +  A K+Y+ A +     +           KA  +A   +    +L  + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK----- 519
             A KL TK  +LD R+ +A    AQ  +QM  +D A    + +  +     +       
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 520 LEYKTLKEKMKEYNKKEAKFYGNMFA 545
            E   ++++++      AK    +  
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
           G +        +             + +  A  LK     N        K++ +A K   
Sbjct: 1   GSHMNGEPDIAQLKGLSP------SQRQAYAVQLK-----NRGNHFFTAKNFNEAIKYYQ 49

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++LD          +  YI   DL+       KALEI PD+
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 22/176 (12%), Positives = 45/176 (25%), Gaps = 15/176 (8%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E +            + F              +  Y        D  ++   A      +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
            N         Y       T    L      AL      +    +L  A+  +++++ + 
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 513 PDNR------DVKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEA 553
           P             + +  +E  K + K      +    Y   G M+  + + K A
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 15/113 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F    Y  A + ++KA      +                   +  A    K   + 
Sbjct: 317 GQMYFILQDYKNAKEDFQKA---QSLNPEN-------VYPY-----IQLACLLYKQGKFT 361

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           ++E    +         +     A+      D D A      A  ++     +
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 48  EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107
           +  D         + Y       +    S     P +F +G   +I G +  +   + GE
Sbjct: 2   QNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGE 61

Query: 108 NAVFTIPPELAYGE 121
                I PE AYG 
Sbjct: 62  WEEVVIAPEEAYGV 75

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
           +      ++   + Q  ++ +    +  ++  EF     Q+I GL++AV+  +  E   +
Sbjct: 8   SIKQAALIEYEVREQGSSIVLDS--NISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV 65

Query: 347 TIAPEYAFG 355
            IAPE A+G
Sbjct: 66  VIAPEEAYG 74

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G   ++AGK+  A K ++       YD  +                L   AC+  L  
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARY---------------FLGLGACRQSLGL 67

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y+QA +  +    +D    +  +  A+ ++Q+ DLD AE     A  +          ++
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP----AHE 123

Query: 524 TLKEKMKEY 532
            L  +    
Sbjct: 124 ALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532
            +  L    ++ LY       Q    D A+   +    +D  +    L     ++ +  Y
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 533 NK 534
            +
Sbjct: 69  EQ 70

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + YT  + +G   D          +  G  N+I G +  ++  ++GE     +
Sbjct: 4   GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57

Query: 114 PPELAYGE 121
           P E AYG 
Sbjct: 58  PAEKAYGP 65

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                 +  G+   A   +     Y  Y+  +                +  AA     + 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------IMGLAAIYQIKEQ 85

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           ++QA  L      L   +   ++   Q  +++     A+   +  ++   D   +K++ +
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-KLKIKAQ 144

Query: 524 TLKEKMK 530
           +  + ++
Sbjct: 145 SYLDAIQ 151

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E G   F       A   ++ A   +         EK  A         N      KLK 
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEKPWAATW-----ANLGHAYRKLKM 531

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           Y  A     + L L + +       A  Y+      LA   + ++L I P+ 
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 15/134 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G       K + A + + K+      D  FG            A     A       ++ 
Sbjct: 380 GIYYLCVNKISEARRYFSKS---STMDPQFGP-----------AWI-GFAHSFAIEGEHD 424

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           QA    T    L              ++Q+ ++ LA   ++ +  +   +  +  E   +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

Query: 526 KEKMKEYNKKEAKF 539
                +       F
Sbjct: 485 AFNKSDMQTAINHF 498

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.2 bits (146), Expect = 9e-10
 Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 22/152 (14%)

Query: 405 QGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG-------DEEKKQAKALK------ 447
           +G        + RA + Y++A+       E             DEE      L       
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 448 -----VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                +         K   +D  +  +     ++   ++   L  +A      +      
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
               K LEIDP N DV   +     +  E NK
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 18/118 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----- 460
           G    + G    A++  + +    +YD             L     L   A         
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD----------PLLL---NELGVVAFNKSDMQTA 494

Query: 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           +  ++ A  L  K    +            AY ++   D A   + + L +  ++ +V
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           + +TLF   ++        K ++   Y+               +     + A   +  + 
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYN---------------LDVYPLHLASLHESGEK 355

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +   +   ++D               Y+ +  +  A     K+  +DP  
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +L ++G+  +        V          D   ++A        +      L +    
Sbjct: 346 LASLHESGEKNKLYLISNDLV----------DRHPEKAVTW---LAV--GIYYLCVNKIS 390

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +  +K   +D +   A    A ++    + D A      A  +    
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R ++ Y  ++  +          +K +  L     L  A        
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGL----------EKSSDLL-----LCKADTLFVRSR 320

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +     + TK+L++D  N+        +  +  + +         ++  P+ 
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 32/126 (25%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G YARA     K   Y                    AC    A C +KL D++
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRS----------------SACRYLAAFCLVKLYDWQ 167

Query: 466 QAEKLC------------TKVLDLDSRNVK----ALYRRAQAYIQMADLDLAEFDIKKAL 509
            A  L                L +    +K      Y R Q Y  +++ D A+   K+AL
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227

Query: 510 EIDPDN 515
            +D   
Sbjct: 228 MVDAKC 233

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 21/137 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA-CKLKLKDY 464
           G  L++  +Y  A +R  +A +   Y           ++         N     L++K  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPER--------SRVF------ENLGLVSLQMKKP 157

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-----VK 519
            QA++   K L L+          A    +  +   A        +    N       ++
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217

Query: 520 LEYKT-LKEKMKEYNKK 535
           L      ++    Y  +
Sbjct: 218 LAKVFEDRDTAASYGLQ 234

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 436 GDEEKKQAKALK-----VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490
              ++   K  K         +      L+  + +QA+    K L++D  +  A    A 
Sbjct: 20  HMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAV 79

Query: 491 AYIQMADLDLAEFDIKKALEIDPDNRDV 518
            +    +  LA+ + +KAL  D  N  V
Sbjct: 80  VFQTEMEPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 55/172 (31%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G    + G   +A     KA   +E D S        A A          A   +   + 
Sbjct: 44  GLGYLQRGNTEQAKVPLRKA---LEIDPSS-------ADAH------AALAVVFQTEMEP 87

Query: 465 KQAEKLCTKVLDLDSRNVKALY-----------------------------RRAQAY--- 492
           K A++   K L  DSRN + L                               R++ +   
Sbjct: 88  KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147

Query: 493 ----IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
               +QM     A+   +K+L ++ +   V LE   L  K +EY    A+ Y
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY--VPARQY 197

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           ++ +  L  +     ++   K          A  +    Y+Q  + + A+  ++KALEID
Sbjct: 8   HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67

Query: 513 PDN 515
           P +
Sbjct: 68  PSS 70

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E G   F+ G++  A K +  A   +E   + G+E            N N      KLK 
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDA---LEKIKAIGNEVTVDKWEP--LLN-NLGHVCRKLKK 251

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y +A     + L L  +N          +  M + + A      AL +  D+        
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS---VT 308

Query: 524 TLKEKMKEYNK-KEA 537
            L   ++ Y    EA
Sbjct: 309 MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 16/129 (12%)

Query: 415 YARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470
           Y     + E A +Y       + ++G            A             ++ QA   
Sbjct: 100 YLMVGHKNEHARRYLSKATTLEKTYGP-----------AWI-AYGHSFAVESEHDQAMAA 147

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530
                 L       +      Y    +  LAE    +AL I P++  V  E   +  +  
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207

Query: 531 EYNKKEAKF 539
           E+   E  F
Sbjct: 208 EWKTAEKWF 216

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 24/150 (16%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
            G++     ++ +A   Y  A    +               +     L          + 
Sbjct: 131 YGHSFAVESEHDQAMAAYFTA---AQLMKGC-------HLPM-----LYIGLEYGLTNNS 175

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           K AE+  ++ L +   +   ++       Q  +   AE     ALE      +     K 
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK- 234

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
                   N       G++  K+ +  EA 
Sbjct: 235 ---WEPLLNNL-----GHVCRKLKKYAEAL 256

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                +    +    K     ++          ++   A  L       +    ++L   
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVME----------KDPFHASCLP-----VHIGTLVELNKA 72

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDN 515
            +   L  K++DL   N  + +     Y+ +    + A   + KA  ++   
Sbjct: 73  NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           ++ A       D+K   KL + V++ D  +   L       +++   +   +   K +++
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 512 DPDN 515
            P N
Sbjct: 86  YPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 26/70 (37%)

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           K +E +  + +D    N+  +   A+ +    D  +        +E DP +      +  
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 525 LKEKMKEYNK 534
              ++ + N+
Sbjct: 65  TLVELNKANE 74

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L K G+ + A ++Y+ A   ++ DT+                     +      ++ 
Sbjct: 81  GKILMKKGQDSLAIQQYQAA---VDRDTTR-------LDMYG-----QIGSYFYNKGNFP 125

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A +   K +   + + K  Y   QAY    +   A+    K LE+ P+ 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 20/159 (12%), Positives = 38/159 (23%), Gaps = 29/159 (18%)

Query: 405 QGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG---DEEKKQAKALKVACNLNNAA- 456
             + LFK   YA A + + K                    E  K   A K      +   
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 457 --------------CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                           +K      A +     +D D+  +    +    +    +  LA 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 503 FDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNK 534
             ++K +     +              K   +    + K
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 22/137 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G   +   +Y +A   + K    +E                        A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKV---LELK-------PNIYIGY---LWRARANAAQDPDTKQ 195

Query: 465 KQAEKLCTKVLDLDSRN--------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
             A+    K++++ +          ++A    A  Y    D   A+   K  L +DP N+
Sbjct: 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

Query: 517 DVKLEYKTLKEKMKEYN 533
                 K   E    ++
Sbjct: 256 KAIDGLKMKLEHHHHHH 272

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 34/154 (22%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+  +  G +  A +  EK    I   T+         K                 K+Y 
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQ---IRPTTTD-------PKVF-----YELGQAYYYNKEYV 159

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEY 522
           +A+    KVL+L          RA+A           LA+   +K +E+           
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA----- 214

Query: 523 KTLKEKMKEYNKKEAKFYGNM---FAKMTEPKEA 553
                   +Y  +  +    +   +    +  +A
Sbjct: 215 --------KYKDELIEANEYIAYYYTINRDKVKA 240

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 31/167 (18%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L        ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVLL-----LLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
             ++    T  +  +    +A       Y +   L  A    + AL + PD  D      
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 518 -VKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEAE 554
              +    ++  ++ Y                 GN+   +   +EA+
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N L + G  A A   Y  A   +    +        A +L    NL  A  K +  + +
Sbjct: 278 ANALKEKGSVAEAEDCYNTA---LRLCPTH-------ADSL---NNL--ANIKREQGNIE 322

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           +A +L  K L++      A    A    Q   L  A    K+A+ I P   D
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G+   A   +EKA   +  D +F         A     NL N     + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKA---VTLDPNF-------LDAY---INLGNV--LKEARIFD 220

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A     + L L   +       A  Y +   +DLA    ++A+E+ P  
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
               ++ G    A   Y +A   IE    F         A    CNL NA    +     
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA---IELQPHF-------PDAY---CNLANA--LKEKGSVA 288

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +AE      L L   +  +L   A    +  +++ A    +KALE+ P+ 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 31/165 (18%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L  AG    A + Y  A   ++Y+                  +L N      L   +
Sbjct: 108 AAALVAAGDMEGAVQAYVSA---LQYNPDL-------YCVR---SDLGNL--LKALGRLE 152

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------V 518
           +A+    K ++       A       +    ++ LA    +KA+ +DP+  D       V
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212

Query: 519 KLEYKTLKEKMKEYNK------KEAKFYGNM---FAKMTEPKEAE 554
             E +     +  Y +        A  +GN+   + +      A 
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN   + G+   A + Y  A   +     F D               N AA  +   D +
Sbjct: 74  GNVYKERGQLQEAIEHYRHA---LRLKPDFID-----------GYI-NLAAALVAAGDME 118

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A +     L  +                +  L+ A+    KA+E  P+ 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 9e-10
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN L +A  + RA   Y +A   +    +        A       NL  A    +     
Sbjct: 210 GNVLKEARIFDRAVAAYLRA---LSLSPNH-------AVVH---GNL--ACVYYEQGLID 254

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A     + ++L      A    A A  +   +  AE     AL + P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +  A  + +  D++ AE+ C ++   +  N   L   +  + Q   LD +      A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 512 DPDN 515
           +P  
Sbjct: 63  NPLL 66

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 9/113 (7%), Positives = 27/113 (23%), Gaps = 15/113 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            +     G         ++    +              +A+           +   + + 
Sbjct: 30  ADAELGMGDTTAGEMAVQRG---LALHPGH-------PEAV-----ARLGRVRWTQQRHA 74

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           +A  L  +  D    +         A       + A     +A ++ P+   +
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471
                R   +   AV++            +   A      L  A  +L + D    E   
Sbjct: 2   TADGPRELLQLRAAVRH----------RPQDFVAW-----LMLADAELGMGDTTAGEMAV 46

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            + L L   + +A+ R  +          A   +++A +  P++  +
Sbjct: 47  QRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      ++   K  L+  +
Sbjct: 385 GGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SHDGGKQALETVQ 429

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   +  +   L  + V A+         +  +         AL    ++  V L     
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGG 489

Query: 526 KEKMKEYNK 534
           +  +    K
Sbjct: 490 RPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 12/136 (8%), Positives = 35/136 (25%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +A               +Q  A+      +N   K  L+  +
Sbjct: 351 DGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SNGGGKQALETVQ 395

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NR-DV 518
           +   +  +   L    V A+         +  +      + +A  + P       +    
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

Query: 519 KLEYKTLKEKMKEYNK 534
           +   +++  ++   + 
Sbjct: 456 RPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 14/136 (10%), Positives = 38/136 (27%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      ++   K  L+  +
Sbjct: 317 GGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SHDGGKQALETVQ 361

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVK 519
           +   +  +   L    V A+         +  +      + +A  + P+      + D  
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 520 LEY-KTLKEKMKEYNK 534
            +  +T++  +    +
Sbjct: 422 KQALETVQRLLPVLCQ 437

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 16/168 (9%), Positives = 42/168 (25%), Gaps = 31/168 (18%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A               +Q  A+      +N   K  L+ 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SNGGGKQALET 257

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L  + V A+   +     +  +      + +A  + P          
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 518 -VKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEAEP 555
             K   +T++  +    +      ++             +   +   P
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 365

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 22/138 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                               +A               +Q  A+      +N   K  L+ 
Sbjct: 145 SHDGGKQALETVQALLPVLCQA---HGLTP-------EQVVAIA-----SNGGGKQALET 189

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L  + V A+         +  +      + +A  + P          
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 518 -VKLEYKTLKEKMKEYNK 534
             K   +T++  +    +
Sbjct: 250 GGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 22/137 (16%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A               +Q  A+      +N   K  L+  
Sbjct: 282 NSGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAI-----ASNGGGKQALETV 326

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRD- 517
           ++   +  +   L  + V A+         +  +      + +A  + P+      +   
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGG 386

Query: 518 VKLEYKTLKEKMKEYNK 534
            K   +T++  +    +
Sbjct: 387 GKQALETVQRLLPVLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 11/111 (9%), Positives = 26/111 (23%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A               +Q  A+      ++   K  L+  
Sbjct: 112 HDGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SHDGGKQALETV 156

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +    +  +   L    V A+         +  +      + +A  + P  
Sbjct: 157 QALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R      +A               +Q  A+      ++   K  L+ 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SHDGGKQALET 121

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + P+ 
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 15/161 (9%), Positives = 44/161 (27%), Gaps = 30/161 (18%)

Query: 413 GKYARASKRYEKAV--KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470
                A   +  A+    +           +Q  A+      ++   K  L+  ++   +
Sbjct: 47  VTAVEAVHAWRNALTGAPLNLTP-------EQVVAI-----ASHDGGKQALETVQRLLPV 94

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYK 523
             +   L  + V A+         +  +      + +A  + P+           K   +
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154

Query: 524 TLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEAEP 555
           T++  +    +      ++       G     +   +   P
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 9/91 (9%), Positives = 24/91 (26%), Gaps = 2/91 (2%)

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
                       +  ++ A  L    L+L    V A+         +  +      + +A
Sbjct: 41  IAKRGGVTAVEAVHAWRNA--LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98

Query: 509 LEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
             + P        +   K+ ++   +     
Sbjct: 99  HGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 23/137 (16%)

Query: 406 GNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA-CKLKLKD 463
           G  L  +  + A +   ++KA+    Y T           A        N   C  K   
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTP--------YIAN------LNKGICSAKQGQ 128

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
           +  AE    + L    +   A    A+  +    L  A++  KK        +       
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188

Query: 518 VKLEYKTLKEKMKEYNK 534
            K+    L      Y  
Sbjct: 189 WKIAKA-LGNAQAAYEY 204

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 32/188 (17%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EEK 440
           E+  + +  K +      +   Y +A+   E A   ++ D                 +  
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDA---LKSDPKNELAWLVRAEIYQYLKVN 58

Query: 441 KQA-----KALKVA-------CNLNNAACKLKLKDYKQAEKLCTKVL--DLDSRNVKALY 486
            +A     +AL +         N     C  +L    ++     K L          A  
Sbjct: 59  DKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANL 117

Query: 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546
            +     +     LAE  +K++L   P       E    K    +    +A +Y   +  
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL--GDADYYFKKYQS 175

Query: 547 MTEPKEAE 554
             E  +A+
Sbjct: 176 RVEVLQAD 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 31/165 (18%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N L    +  RA   Y+KA   +E D+S              A         +  + YK
Sbjct: 64  ANLLSSVNELERALAFYDKA---LELDSSAAT-----------AYY-GAGNVYVVKEMYK 108

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------V 518
           +A+ +  K L     N    Y      +++    LA   +++A+E++ ++ +        
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168

Query: 519 KLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEAE 554
                 L E + ++          A  +   G  +A     ++A 
Sbjct: 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 15/127 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L K  +   A    ++A   +E + +  +           A       C        
Sbjct: 132 GTVLVKLEQPKLALPYLQRA---VELNENDTE-----------ARF-QFGMCLANEGMLD 176

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A      V + D  +  A Y     Y    + + A   + KA++I PD+       K L
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236

Query: 526 KEKMKEY 532
                 +
Sbjct: 237 GHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 31/166 (18%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q     + G Y +A++ + KA   IE +          A        +N A     + + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKA---IEENKED-------AIPY-----INFANLLSSVNEL 73

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------- 517
           ++A     K L+LDS    A Y     Y+       A+   +KAL    +N D       
Sbjct: 74  ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133

Query: 518 VKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMTEPKEAE 554
           V ++ +  K  +    +       + +     G   A      EA 
Sbjct: 134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 31/157 (19%)

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLKDYKQAEKLCTK 473
             +   +  +   +              +   +A            +  DY++A +  TK
Sbjct: 2   GSSHHHHHHSSGLVP-------------RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTK 48

Query: 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLK 526
            ++ +  +       A     + +L+ A     KALE+D            V +  +  K
Sbjct: 49  AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108

Query: 527 EKMKEYNK------KEAKFY---GNMFAKMTEPKEAE 554
           E    + K      +    +   G +  K+ +PK A 
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLAL 145

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 28/158 (17%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEY-------DTSFGDEEKKQA------KALKV 448
           G  L+  G+   A        +               +    +++ K+       K+ K 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 449 ACNLNNAACKL----KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
               N     L    +    ++ +   T    L     +  +   + Y+ + DLD A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 505 IKKALEIDPDN-------RDVKLEYKTLKEKMKEYNKK 535
            K A+  +  N                 ++ + E +++
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 24/185 (12%)

Query: 356 SAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKY 415
           ++  + E+  VP   T+  EV L   E+   S  +  +E+ +   ++   G      G  
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYER---GVLYDSLGLR 59

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475
           A A   + +A   +              +       L       +  ++  A +    VL
Sbjct: 60  ALARNDFSQA---LAIRPDM-------PEVF---NYLGIY--LTQAGNFDAAYEAFDSVL 104

Query: 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVKLEYKTLKEKM 529
           +LD     A   R  A        LA+ D+    + DP+         +  +    K+  
Sbjct: 105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 164

Query: 530 KEYNK 534
           +   +
Sbjct: 165 EVLKQ 169

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 15/135 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                 +++G Y  A   ++        D                   L   AC+  +  
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQAL---CVLDHYDSR------------FFLGLGACRQAMGQ 70

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y  A    +    +D    +  +  A+  +Q  +L  AE  +  A E+  +  +      
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

Query: 524 TLKEKMKEYNKKEAK 538
            +   ++    K+  
Sbjct: 131 RVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 12/85 (14%), Positives = 23/85 (27%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A  + +   Y+ A  +   +  LD  + +           M   DLA         +D  
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
                        +  E  + E+  
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGL 112

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 10/72 (13%), Positives = 23/72 (31%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
                      + ++ S  ++ LY  A    Q    + A    +    +D  +    L  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 523 KTLKEKMKEYNK 534
              ++ M +Y+ 
Sbjct: 62  GACRQAMGQYDL 73

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           M   +++  A            AG+Y  A+    +A   +E   +   EE          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----------VKALYRRAQAYIQMADL 498
           C+   A     L+ + +A     K L   +R            + A+Y RA A   +   
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118

Query: 499 DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
             A  + KK +E+  + +      + + E   +
Sbjct: 119 AEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 18/151 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G ++ K    A A+  +E      +      +           A   +    + + + 
Sbjct: 26  EEGLSMLKLANLAEAALAFEAV---CQAAPEREE-----------AWR-SLGLTQAENEK 70

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
              A         LD +++      A ++    + + A   ++  L   P    +     
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL---GS 127

Query: 524 TLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
              +   + +    +     FA   E +E  
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 23/150 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           G     +  Y  A+    +A   +E            A+        N   A        
Sbjct: 179 GVLYNLSNNYDSAAANLRRA---VELRPDD-------AQLW------NKLGATLANGNRP 222

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           ++A     + LD++   V+ +Y  A +Y  M+  DLA   + +A+ +         E   
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
              +           +  +   M  P   E
Sbjct: 283 EATRSMWDF------FRMLLNVMNRPDLVE 306

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 18/149 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +         A       +         G    +    +      +         +Y+
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   L    L+++  + +        Y    + D A  ++++A+E+ PD+  +       
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL------- 208

Query: 526 KEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
                 +NK      G   A    P+EA 
Sbjct: 209 ------WNKL-----GATLANGNRPQEAL 226

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +      LKL +  +A      V        +A         +     LA   +  A  +
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 512 DPDNRDV 518
           DP +  V
Sbjct: 85  DPKDIAV 91

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 18/151 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G    + G    A   +E AV+          ++ K  +A      L     + +   
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQ----------QDPKHMEAW---QYLGTTQAENE--Q 113

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
              A     + L+L   N  AL   A ++   +    A   ++  L   P    +     
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL---VT 170

Query: 524 TLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
             +E         +K         +   E +
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 201

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 379 VSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYAR-----ASKRYEKAVKYIEYDT 433
           + FE+ K + + + +   +   + +E      +A  +        S  Y+K  ++     
Sbjct: 1   MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQF----- 55

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
                 +++               +L+  D   A  L    +  D ++++A         
Sbjct: 56  ------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109

Query: 494 QMADLDLAEFDIKKALEIDPDNRDV 518
           +     LA   +++ LE+ PDN+  
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 24/150 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G     +G+Y +A   +  A   +    +                 L      L      
Sbjct: 224 GVLFNLSGEYDKAVDCFTAA---LSVRPND-------YLLW---NKLGAT---LANGNQS 267

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           ++A     + L+L    +++ Y    + I +     A     +AL +   +R  + E   
Sbjct: 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           + E +               + + +     
Sbjct: 328 MSENIWST-------LRLALSMLGQSDAYG 350

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +        +A +     ++Y           ++ A    +  +       L    + 
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 466 QAEKLCTKVLDLDSRNVKA--LYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           + ++L    + LD  ++           +    + D A      AL + P++
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 15/117 (12%)

Query: 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
           G  K    +L     +    + +  A   +  D +  D                      
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAA---VRLDPTSID-----------PDVQCGLGVLF 227

Query: 460 K-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
               +Y +A    T  L +   +     +           + A    ++ALE+ P  
Sbjct: 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +A                Q  A+      +N   K  L+  +
Sbjct: 233 DGGKQALETMQRLLPVLCQA---HGLPP-------DQVVAIA-----SNIGGKQALETVQ 277

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R      +A                Q  A+      +N   K  L+ 
Sbjct: 638 SHDGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASNGGGKQALET 682

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A                Q  A+      ++   K  L+ 
Sbjct: 299 SHGGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASHDGGKQALET 343

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 6e-08
 Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      ++   K  L+  
Sbjct: 198 NNGGKQALETVQRLLPVLCQA---HGLTP-------AQVVAIA-----SHDGGKQALETM 242

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 6e-08
 Identities = 10/111 (9%), Positives = 26/111 (23%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      ++   K  L+  
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGL----------TPAQVVAI-----ASHDGGKQALETV 649

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  +  + 
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 11/112 (9%), Positives = 25/112 (22%), Gaps = 16/112 (14%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A                Q  A+       +   K  L+ 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI------ASNGGKQALET 410

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +   + P  
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 30/190 (15%)

Query: 335 VITMKKNEVALLTIAPEY-----AFGSAESQQELAVVPPNSTVHYEVELVSFEKE--KES 387
           ++ + ++  AL T+A  Y     A   A  +  + V    S       L++   E     
Sbjct: 91  IVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPP 150

Query: 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAV--KYIEYDTSFGDEEKKQAKA 445
             ++T + ++ A +                A      A+    +            Q  A
Sbjct: 151 LQLDTGQLVKIAKRGG---------VTAMEAVHASRNALTGAPLNLTP-------AQVVA 194

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
           +      +N   K  L+  ++   +  +   L    V A+         +  +      +
Sbjct: 195 I-----ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 506 KKALEIDPDN 515
            +A  + PD 
Sbjct: 250 CQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A                Q  A+      +N   K  L+  +
Sbjct: 572 GGGKQALETVQRLLPVLCQA---HGLTQ-------VQVVAI-----ASNIGGKQALETVQ 616

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A                Q  A+      +N   K  L+  +
Sbjct: 538 GGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASNGGGKQALETVQ 582

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   +  +   L    V A+         +  +      + +A  + P        +   
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642

Query: 526 KEKMKEYNK 534
           K+ ++   +
Sbjct: 643 KQALETVQR 651

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 12/112 (10%), Positives = 26/112 (23%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      +      +A                Q  A+      +N   K  L   +
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGL----------TPDQVVAIA-----SNIGGKQALATVQ 514

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           +   +  +   L    V A+         +  +      + +A  + PD   
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      +N   K  L+  
Sbjct: 503 NIGGKQALATVQRLLPVLCQA---HGLTP-------DQVVAIA-----SNGGGKQALETV 547

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  +    
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +                 Q  A+      ++   K  L+  +
Sbjct: 436 DGGKQALETVQRLLPVLCQT---HGLTP-------AQVVAI-----ASHDGGKQALETVQ 480

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           Q   +  +   L    V A+         +A +      + +A  + PD 
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK---VACNLN 453
           +  G    Q   +       +A +  ++ +               QA  L    V    +
Sbjct: 794 QDHGLTLAQVVAIASNIGGKQALETVQRLL-----------PVLCQAHGLTQDQVVAIAS 842

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           N   K  L+  ++   +  +   L    V A+         +  +      + +   +  
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902

Query: 514 DNRDVKLEYKTLKEKMKEYNKKEAKF 539
           D   V +     K+ ++   +     
Sbjct: 903 DQ-VVAIASNGGKQALETVQRLLPVL 927

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 14/160 (8%), Positives = 46/160 (28%), Gaps = 19/160 (11%)

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           E+         +  G   +Q   +       +A +  ++ +               Q   
Sbjct: 851 ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLL-----------PVLCQDHG 899

Query: 446 LKVACN--LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503
           L +     + +   K  L+  ++   +  +   L    V A+   +     +  +     
Sbjct: 900 LTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLP 959

Query: 504 DIKKALEIDPD------NRDVKLEYKTLKEKMKEYNKKEA 537
            + +   + P+      +   K   +++  ++   +   A
Sbjct: 960 VLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALA 999

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G        +  A   +       +            ++        N       LK+ 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPH----------SRIC-----FNIGCMYTILKNM 53

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            +AEK  T+ ++ D     A ++R   Y Q    DLA  D+K+AL     N+ +  +YK 
Sbjct: 54  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--DYKI 111

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           L  + K +  +       M+AK  E K+AE
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 36/147 (24%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G           A K + ++   I  D          A A              + + Y 
Sbjct: 44  GCMYTILKNMTEAEKAFTRS---INRDKHL-------AVAY-----FQRGMLYYQTEKYD 88

Query: 466 QAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKAL 509
            A K   + L     N                 + LY  A  Y +  +   AE  +  A 
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            +  + R  K++     + M+   K++
Sbjct: 149 SMKSEPRHSKID-----KAMECVWKQK 170

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N        KD+K A    + V D  S   +  +     Y  + ++  AE    +++  D
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 513 PDN 515
              
Sbjct: 68  KHL 70

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G +  KAG+Y++A    E+     + D                  +L  A   +K     
Sbjct: 15  GISHAKAGRYSQAVMLLEQV---YDADAFD-------VDVA---LHLGIA--YVKTGAVD 59

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +  +L  + L     NVK        Y+Q+   DLA   + K  E +P N
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G    K G   R ++  E++   +              K       L      ++++ Y 
Sbjct: 49  GIAYVKTGAVDRGTELLERS---LADAPDN-------VKVA---TVLGLT--YVQVQKYD 93

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------V 518
            A  L  KV + +  N    +R   A   +   D A    K AL + P+           
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153

Query: 519 KLEYKTLKEKMKEYNK 534
             +    +E +  + K
Sbjct: 154 YEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 24/110 (21%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G T  +  KY  A     K     E +                   L  A     L  + 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKV---AEANPIN-------FNVR---FRLGVA--LDNLGRFD 127

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A       L L     K     A +Y QM   + A    KKA E+D   
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQ----------AKALKV--- 448
            N   + G    A + Y KA++    +    ++     ++Q           +A+++   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 449 -ACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
            A   +N    LK ++D + A +  T+ + ++     A    A  +    ++  A    +
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
            AL++ PD  D         + + ++   + + 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 25/176 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAK---ALK-----VACN-- 451
            + L + GK   A   Y++A++    + +  ++ G+  K+      AL+     +  N  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 452 ----LNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
                +N A   K   +  +A       L L      A    A     + D    +  +K
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

Query: 507 KALEIDPDNRDVKLEYKTLKEKMK------EYNKKEAKFYGNMFAKMTEPKEAEPM 556
           K + I  D  +                    + K  A+ +GN+           P 
Sbjct: 170 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPY 225

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 452 LNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           LNN A   +   + ++A +L  K L++      A    A    Q   L  A    K+A+ 
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 511 IDPDN 515
           I P  
Sbjct: 72  ISPTF 76

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G ++ K    A A+  +E   +          +E ++ +A +   +L     + + + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQ----------KEPEREEAWR---SL--GLTQAENEK 66

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              A         LD +++      A ++    + + A   ++  L   P    +
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 21/67 (31%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +      LKL +  +A      V   +    +A         +     LA   +  A  +
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 512 DPDNRDV 518
           DP +  V
Sbjct: 81  DPKDIAV 87

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.2 bits (129), Expect = 9e-09
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D          A+A     NL NA    K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKA---LELDPRS-------AEAW---YNLGNA--YYKQGDYD 52

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP +
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D          A+A     NL NA    K  DY 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKA---LELDPRS-------AEAW---YNLGNA--YYKQGDYD 86

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP +
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D +        A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPNN-------AEAW---YNLGNA--YYKQGDYD 60

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD  N +A Y    AY +  D D A    +KALE+DP+N
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALE 510
           L      +   D + A +   + L  +     +A Y    AY ++ D   A  + + A+E
Sbjct: 4   LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNK 534
           ++PD+  ++   K + + +  YNK
Sbjct: 64  LNPDSPALQ-ARKMVMDILNFYNK 86

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 14/145 (9%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +E    + E + E WD    E  E A   +    +  +  +        EK   +     
Sbjct: 5   FERAKAAVESDTEFWDKMQAEWEEMA---RRNWISENQEAQNQVTVSASEKGYYFHT--- 58

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
                   +               +LK  D           +  D  + +A         
Sbjct: 59  --------ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA 110

Query: 494 QMADLDLAEFDIKKALEIDPDNRDV 518
           +  +   A   +++ LE+ P+N   
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 22/141 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G    K G         E A   I  D          A+A +    L     + +  +
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAA---ILQDPGD-------AEAWQ---FLGITQAENE--N 114

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRD 517
            + A     + L+L   N+KAL   A +Y   +    A   +K  ++ +P       N+ 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 518 VKL-EYKTLKEKMKEYNKKEA 537
                 + + +   + +  E 
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEG 195

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 19/149 (12%), Positives = 45/149 (30%), Gaps = 21/149 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G     +G++ RA   +  A   +                     N    A        +
Sbjct: 220 GVLFHLSGEFNRAIDAFNAA---LTVRPEDYS-----------LWN-RLGATLANGDRSE 264

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +  T+ L++    +++ Y    + I +     A  +   AL +   +R+ +      
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

Query: 526 KEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
                    + A       + M +P+  +
Sbjct: 325 ISGNIWAALRIA------LSLMDQPELFQ 347

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 14/98 (14%), Positives = 37/98 (37%)

Query: 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477
            +  +E+A   +E DT F D+ + + + +     ++             +EK      + 
Sbjct: 1   GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60

Query: 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++    +      ++  DL +    ++ A+  DP +
Sbjct: 61  PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 29/188 (15%)

Query: 395 KIEAAGKKKEQGNTLFKAGK--YARASKRYEKAVK----YIEYDTSFG------DEEKKQ 442
           +IE+     E+G T  K G     RA   +EKA++      E+ +         D     
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 443 AKALK--------------VACNLNNA--ACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486
             A+               +   L       + + ++  + EKL  + L+        L 
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNMFA 545
             A+ Y +  + D A   +KKALE  P+N  +  +     + K+ +              
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 546 KMTEPKEA 553
            +     A
Sbjct: 312 LLELIGHA 319

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 13/125 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACK 458
            +    A +Y  A   ++K                 +G+ +  Q K    A +      K
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400

Query: 459 LKLKDY------KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           +  K         + +K+    L  +  + +AL+  A        +  A+ D ++ LE  
Sbjct: 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460

Query: 513 PDNRD 517
                
Sbjct: 461 SLIPS 465

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 16/141 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G+   A +   KA + I+       E   QA+   +    N A     +    
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQ------QEHADQAEIRSLVTWGNYAWVYYHMGRLS 111

Query: 466 QAEKLCTKVLDL--------DSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDN 515
             +    KV  +           + +         ++      + A+   +KALE  P N
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 516 RDVKLEYKTLKEKMKEYNKKE 536
            +          ++  +   +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQ 192

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 34/189 (17%)

Query: 363 LAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRY 422
           L  +P N+ +H ++      K  +  ++           +               A    
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLR----------ENGMYGKRKLLELIGHAVAHL 323

Query: 423 EKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482
           +KA    E + +                    A+       Y++AE    K    +   V
Sbjct: 324 KKA---DEANDNLFR------------VCSILASLHALADQYEEAEYYFQKEFSKELTPV 368

Query: 483 KA-----LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD---VKLEYKTLKEKMKEYNK 534
                   Y   Q Y QM   D A     + ++I+  +R+   +K + + + +     N 
Sbjct: 369 AKQLLHLRYGNFQLY-QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG 427

Query: 535 KEAKFYGNM 543
            +++    +
Sbjct: 428 ADSEALHVL 436

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G   + AG Y  +   +EKA   I+ D                            L+ Y
Sbjct: 12  EGVLQYDAGNYTESIDLFEKA---IQLDPEESK-----------YWL-MKGKALYNLERY 56

Query: 465 KQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++A      V+++  D  N      +A A   +   ++     +   +++  +
Sbjct: 57  EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
                +    +Y ++  L  K + LD    K    + +A   +   + A       + + 
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70

Query: 513 PDNRDV 518
            D  + 
Sbjct: 71  EDEYNK 76

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 17/168 (10%)

Query: 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKA 412
                + +   +V   N+T       + F  +     + T  + ++          L K 
Sbjct: 84  IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKL 143

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKL 470
            +   A K  +K     E  T                  L  A   L    +  + A  +
Sbjct: 144 DRLDLARKELKKMQDQDEDAT---------------LTQLATAWVSLAAGGEKLQDAYYI 188

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
             ++ D  S  +  L  +A  ++     + AE  +++AL+ D  + + 
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
            +Y  +  R +  V  ++       E  +          L  A+     ++   A +   
Sbjct: 72  AEYLASHSRRDAIVAELD------REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532
           +   L+      +    Q  +++  LDLA  ++KK  + D D    +L    +       
Sbjct: 126 QGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180

Query: 533 NKKEAKFYGNMFAKMTEPKEAEPMSVDSKA 562
             ++A +    F +M +      + ++ +A
Sbjct: 181 KLQDAYYI---FQEMADKCSPTLLLLNGQA 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 86/627 (13%), Positives = 169/627 (26%), Gaps = 183/627 (29%)

Query: 4   DFDIPAANEMD---------------ADMDLPDDAPMMK-VGEEKEIGNQGLKKKLVKEG 47
           DF+     E                  + D  D   M K +  ++EI        ++   
Sbjct: 8   DFET---GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSK 58

Query: 48  EG--------W---DTPEN------GDEVEVHYT-----------GTLLDGTQFDSSRDR 79
           +         W      E        + + ++Y               +    +   RDR
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 80  --STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE---LAYGESGSPPTIPPNATL 134
             +    F   + NV +     ++   K   A+  + P    L  G  GS  T       
Sbjct: 119 LYNDNQVFA--KYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 135 QFDVELLS-------WTSVKDICKDGGIIKKILK-----------EGEKWENPK----DL 172
               ++         W ++K+      +++ + K             +   N K     +
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 173 DEVLVNY--EARLEDGMVVGKADGVE-------FTVKDGHFCPTLAKAVKTMKKG----- 218
              L         E+ ++V     V+       F +     C  L   + T  K      
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLS----CKIL---LTTRFKQVTDFL 281

Query: 219 ----EKVLLAVKPQYGFGEK------GKSASGNEGAVPPNAT----LQIAL--ELVS--- 259
                  +                   K        +P         ++++  E +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 260 --WKTVSEITDDK--KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE 315
             W     +  DK   +I+  L   +    P E               +VF    H    
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE----PAE-------YRKMFDRLSVFPPSAHIPTI 390

Query: 316 QL----FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNS 370
            L    F+    +   V++ L +  +  K+ + + ++I    +        EL V   N 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSI-----YLELKVKLENE 442

Query: 371 -TVHYE-VELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428
             +H   V+  +  K  +S D+                      G + +  +  E   + 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDL---------IPPYLDQYFYSHIGHHLKNIEHPE---RM 490

Query: 429 IEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTKVLDLDSRNVKA-- 484
             +   F D    + K ++      NA+  +   L+  K  +           R V A  
Sbjct: 491 TLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 485 --LYRRAQAYIQMADLDLAEFDIKKAL 509
             L +  +  I     DL    ++ AL
Sbjct: 550 DFLPKIEENLICSKYTDL----LRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 52/421 (12%), Positives = 102/421 (24%), Gaps = 170/421 (40%)

Query: 261 KTVSEITDD---KKVIKKILKEGDGFER-----------PNEGAVVKVK---------LI 297
           K V ++      K+ I  I+   D                 E     V+         L+
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 298 GKLQ----------------------DGTVFVKKGHSEEEQ-------LFEFKTDEEQVI 328
             ++                      D  VF K   S  +        L E +  +  +I
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 329 DGL--------------DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHY 374
           DG+                 V      ++  L         +  S + + +      ++ 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------LKNCNSPETV-LEMLQKLLY- 207

Query: 375 EVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA---------------- 418
             ++      +     N + +I +    + +   L K+  Y                   
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 419 -------------------SKRYEKAVKYIEYDTSFGDEEKKQ--AKALKV--------A 449
                              S      +    +  +   +E K    K L           
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 450 CNLNNAACKL---KLKD-------YKQ--AEKLCTKVLD-----LDSRNVKALYRRAQAY 492
              N     +    ++D       +K    +KL T +++     L+    + ++      
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFD----- 376

Query: 493 IQMADLDLAEF--DIK---KALEI---DPDNRDV-----KLEYKTLKEKMKEYNKKEAKF 539
                  L+ F          L +   D    DV     KL   +L EK      KE+  
Sbjct: 377 ------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTI 426

Query: 540 Y 540
            
Sbjct: 427 S 427

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 21/163 (12%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKV 448
           E K+     + E+    FK  +     K+   ++ Y     E          +  +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC--- 186

Query: 449 ACNLNN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLA 501
               +  A   L LK Y+ A     K   +       + + + LY         +  + A
Sbjct: 187 ---HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEY----NKKEAKFY 540
               K+A+ +  ++  +    +      + +       +A  Y
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 20/154 (12%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKVACNL 452
           E                      K+YE A+ +         +    +        +   L
Sbjct: 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL-------MGRTL 227

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDLD------SRNVKALYRRAQAYIQMADLDLAEFDI 505
            N   CK     Y+ A     + + +           +A +   Q + ++  +D A    
Sbjct: 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 506 KKALEI--DPDNRDVKLEYKTLKEKMKEYNKKEA 537
            K +       +     E++ LK        +EA
Sbjct: 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---- 460
           +G       +Y  A K ++KA   + +      +  ++A+       ++ +   +K    
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIF----VKDRIEKAEFF---FKMSESYYYMKQTYF 161

Query: 461 -LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            +   +QA ++  +    + R ++     A  ++ +   + A    +KA  +    +  +
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221

Query: 520 LEYKTL------KEKMKEYNK 534
           L  +TL      K    +Y  
Sbjct: 222 LMGRTLYNIGLCKNSQSQYED 242

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N   + G   +    +E+ +K +        E     +   V    N+A        Y+
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQL--------EALHDNEEFDVKVRYNHAKALYLDSRYE 213

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--------DLDLAEFDIKKALEIDPDNRD 517
           ++     K +++ S  + ++    Q Y Q          +    E   KKA     D  +
Sbjct: 214 ESLYQVNKAIEI-SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF-DILE 271

Query: 518 VKLEYKTLKEKMKEYNKKE 536
           +    + L  K+       
Sbjct: 272 MHAYKEALVNKISRLEHHH 290

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 350 PEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKK----EQ 405
             ++ G       +A +     +     +   E+E +      +  ++     +    E 
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFET 67

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            +      K     +  EK ++ +       +E    A+    A  L   A  +      
Sbjct: 68  HSVEDAGRKQQDVQEEMEKTLQQM-------EEVLGSAQVEAQALMLKGKALNVTPDYSP 120

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           +AE L +K + L+   V+A  +  + Y +  D+  A      AL    +
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 45/189 (23%)

Query: 406 GNTLFKAGKYARASKRYEKAVK--------------YIEYDTSFGDEEKKQA-------- 443
           G   +K G    A   +  A+                 +  T  GDE  +          
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 444 KALKVA-------CNLNNA------ACKLKLKDYKQAEKLCTKVLDLDSR---NVKALYR 487
            A+++          L NA            K  +QA     +   +D +   N      
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKKEAKFY 540
           RA  +        A     +A  +DP   +       +      L   ++   K + K  
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKL 323

Query: 541 GNMFAKMTE 549
            +M   +  
Sbjct: 324 QSMLGSLRP 332

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVK--YIEYDTSF--GDEEKKQAKALKVACN 451
           +    +         +  +     ++ +  V   Y   D+ F     E    K   V   
Sbjct: 24  MTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ-- 81

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL-AEFDIKKALE 510
                     ++ ++  +   +VL       +AL  + +A     D    AE  + KA++
Sbjct: 82  ----------EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++P+  +   +   +  K  +       F
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + +G    +   L + G   R +  ++ A +   +              L  + N    A
Sbjct: 57  QKSGDHTAEHRALHQVGMVERMAGNWDAARRC--FLEERELLASLPEDPLAASANAYEVA 114

Query: 456 ACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKAL 509
              L   D   A +   K L       D   +  A         Q  +L  A+    +A 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

Query: 510 EI 511
           +I
Sbjct: 175 DI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G       ++  A   ++      +     GD    + +AL     +          ++ 
Sbjct: 33  GYVYAFMDRFDEARASFQAL---QQQAQKSGDHTA-EHRAL---HQVGMVERMAG--NWD 83

Query: 466 QAEKLCTKVLDL------DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            A +   +  +L      D        Y  A   +   DL  A  + +K+L  
Sbjct: 84  AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
             T  K G    A +  +  V     Y+       +       A            +   
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE-------AYVALYR-QAEDRERGK 97

Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
              +QA  +      ++ R      +R   Y  + + D AE  +K+AL ++  
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 26/121 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L+  G+Y  A   +E+A   ++ +           +AL     L     +LKL    
Sbjct: 12  GVQLYALGRYDAALTLFERA---LKENPQD-------PEAL---YWLART--QLKLGLVN 56

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPD 514
            A +    ++    R +      ++AY+ +             L+ A   +K A  ++P 
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116

Query: 515 N 515
            
Sbjct: 117 Y 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           L        L  Y  A  L  + L  + ++ +ALY  A+  +++  ++ A  + K  +  
Sbjct: 9   LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 512 DPDN 515
            P  
Sbjct: 69  TPRY 72

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G        Y+ +   Y +A++    +          A  L    + +            
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAEL---YAALATVLYYQASQH---------MTA 98

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           Q   +  K L LDS  + AL   A      A+   A    +K ++++    +
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 18/119 (15%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
           ++  +            +  +  ++             + ++              L   
Sbjct: 14  RDPLHQFASQQNPEAQLQALQDKIR----------ANPQNSEQW-----ALLGEYYLWQN 58

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL---AEFDIKKALEIDPDNRDV 518
           DY  +     + L L   N +     A      A   +       I KAL +D +    
Sbjct: 59  DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 6/64 (9%), Positives = 24/64 (37%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              ++ +   +     +  + +N +      + Y+   D   +    ++AL++  +N ++
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 519 KLEY 522
               
Sbjct: 81  YAAL 84

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 39/180 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                    Y +A    E A   +E      ++         +A +L N A    +  D 
Sbjct: 189 AGNYDDFKHYDKALPHLEAA---LELAMDIQNDRF-------IAISLLNIANSYDRSGDD 238

Query: 465 KQAEKLCTKVLDL-----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-- 517
           + A +   K   +          K L+  +    +      A   I++ L+         
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298

Query: 518 -------------VKLEYKTLKEKMKEYNKKEAKFY--------GNMFAKMTEPKEAEPM 556
                          ++ + + + +  + KK    Y          +F      ++A   
Sbjct: 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAF 358

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E+++       E+    FK  +     K+   ++ +     +    +     +++   +L
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH--ILQALDIYQNHPLYSIRTIQSL 185

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDI 505
              A      K Y +A       L+L     + R +  +L   A +Y +  D  +A    
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEY----NKKEAKFY 540
           +KA ++  +     L  K L             ++A  +
Sbjct: 246 QKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQF 283

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 23/153 (15%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
             Y    K Y       E   +    +KK    LK          +   K+Y +A     
Sbjct: 66  LDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125

Query: 473 KVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526
           +          D    +  ++ A+AY  M    ++ + I +AL+I               
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------Y 171

Query: 527 EKMKEYNKKEAKFYGNM---FAKMTEPKEAEPM 556
           +    Y+ +  +    +   +       +A P 
Sbjct: 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPH 204

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 22/143 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G   F   +Y  A   Y +A K + +      ++ ++A+          A     +K  
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFV----SDDIEKAEFHF-----KVAEAYYHMKQT 157

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-------DLDLAEFDIKKALEIDPDNRD 517
             +     + LD+   +     R  Q+   +A         D A   ++ ALE+  D ++
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217

Query: 518 VKLEYKTL------KEKMKEYNK 534
            +    +L       ++  +   
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQM 240

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           LK  +  +A  L  ++++ D   V   Y   + Y ++   D A     + +E+  +    
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 519 KLEYKTLKEKMKEYNKKEA 537
               K L E      K E 
Sbjct: 78  ----KDLSELQDAKLKAEG 92

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 32/145 (22%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L  AG        ++ A++         ++ +  +        L NA     L DY
Sbjct: 54  EGERLCNAGDCRAGVAFFQAAIQA------GTEDLRTLSAIY---SQLGNAY--FYLGDY 102

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            +A +     L L     D     K+          M   D A    ++ L +       
Sbjct: 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL------- 155

Query: 519 KLEYKTLKEKMKEYNKKEAKFYGNM 543
               + L ++       E +   N+
Sbjct: 156 ---ARQLGDR-----LSEGRALYNL 172

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 33/160 (20%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GNT +  G +  A + +++    +     FGD    + +A     NL N+   + L  ++
Sbjct: 230 GNTYYLLGDFQAAIEHHQER---LRIAREFGD-RAAERRAN---SNLGNSH--IFLGQFE 280

Query: 466 QAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            A +   + L L     +     ++ Y     Y  + + + A     + L I        
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI-------- 332

Query: 520 LEYKTLKEKMKEYNKKEAKFYGNM---FAKMTEPKEAEPM 556
              + L ++       EA+   ++    + +   + A   
Sbjct: 333 --AQELGDR-----IGEARACWSLGNAHSAIGGHERALKY 365

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GN+    G++  A++ Y++    +      G+ E         A +  +       L ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKRT---LALAVELGEREV-------EAQSCYSLGNTYTLLHEF 319

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
             A +   + L +     D     +A +    A+  +   + A    ++ L++
Sbjct: 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 12/150 (8%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
              G        L +AGK         KAV    Y  +    E ++            + 
Sbjct: 107 VENGTPDTAAMALDRAGKLME-PLDLSKAVHL--YQQAAAVFENEERLRQAAELIGKASR 163

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALE 510
             ++ + + +A     K   +           K    +    +  AD   A+  ++++  
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 511 ID--PDNRDVKLEYKTLKEKMKEYNKKEAK 538
           I     + D     + L +   E ++++  
Sbjct: 224 IPGFSGSEDCAA-LEDLLQAYDEQDEEQLL 252

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
                         +AG   +  +R  +AV+YIE  +    E      A   A  L+ A 
Sbjct: 67  ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA---AMALDRAG 123

Query: 457 CKLKLKDYKQAEKLCTKVLDL-----DSRNVKALYRR-AQAYIQMADLDLAEFDIKKALE 510
             ++  D  +A  L  +   +       R    L  + ++  ++    D A   ++K   
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183

Query: 511 IDPDNRDVKLEYKTL 525
           +  +  +    YK  
Sbjct: 184 MYKEMENYPTCYKKC 198

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
              E   + ++    + KA +     +++++A   ++ + S   E +      K      
Sbjct: 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ- 201

Query: 454 NAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQMADLDLAE 502
               +L   DY  A+K   +   +     S +  AL    QAY +  D +   
Sbjct: 202 -VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ-DEEQLL 252

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 1/83 (1%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
                + + +  A       LD D     A     +      D   A    +  L     
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 515 NRDVKLEYKTLKEKMKEYNKKEA 537
             D ++  K L+  ++   +++A
Sbjct: 86  RGDQQV-VKELQVFLRRLAREDA 107

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             +L   + N+   +   + Y +    D A   ++ AL+ DP 
Sbjct: 9   EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L K+G        +E AV+         ++ K  +        L        L DY
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIY---SQL--GNAYFYLHDY 63

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            +A +     L L     D     KA          + + D A    ++ L+I
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 33/160 (20%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GNT +  G +  A   +E+ +   +    FGD +  + +A     NL NA     L +++
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAK---EFGD-KAAERRAY---SNLGNAYI--FLGEFE 244

Query: 466 QAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            A +   K L L     D     ++ Y     Y  + D + A     K L I        
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-------- 296

Query: 520 LEYKTLKEKMKEYNKKEAKFYGNM---FAKMTEPKEAEPM 556
              + L ++       E +   ++   +  +    +A   
Sbjct: 297 --AQELNDR-----IGEGRACWSLGNAYTALGNHDQAMHF 329

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 30/132 (22%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK--------- 447
           +  G K  +       G        +E A +Y +             K L          
Sbjct: 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK-------------KTLLLARQLKDRA 264

Query: 448 -VACNLNN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLD 499
             A +  +       L+DY++A     K L +     D     +A +    AY  + + D
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324

Query: 500 LAEFDIKKALEI 511
            A    +K LEI
Sbjct: 325 QAMHFAEKHLEI 336

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 13/111 (11%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
           G  A+A   YEKA+         G + K  A+       L   +    L +Y++AE +  
Sbjct: 4   GLEAQAVPYYEKAIAS-------GLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLA 51

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
             +     +       A     +   +     + K +    D+  ++  YK
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ-SYK 101

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            L+D  Q  +    +L+ D++N  A   R     +    D     + + L+ D  N
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L K+G        +E AV+         ++ K  +        L NA     L DY
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIY---SQLGNAYF--YLHDY 59

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            +A +     L L     D     KA          + + D A    ++ L+I
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GNT +  G +  A   +E+ +   +    FGD+              +N     + L ++
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAK---EFGDKA-------AERRAYSNLGNAYIFLGEF 239

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           + A +   K L L     D     ++ Y     Y  + D + A     K L I  + +D 
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299

Query: 519 KLEYKTLK------EKMKEYNK 534
             E +           +  +++
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQ 321

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GN     G++  AS+ Y+K    +       D           A +  +       L+DY
Sbjct: 230 GNAYIFLGEFETASEYYKKT---LLLARQLKDRAV-------EAQSCYSLGNTYTLLQDY 279

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           ++A     K L +     D     +A +    AY  + + D A    +K LEI
Sbjct: 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 12/73 (16%), Positives = 24/73 (32%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           L   +  L+  ++ QA  +   + D           +A   ++    +LA+  +      
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 512 DPDNRDVKLEYKT 524
             DN    L  K 
Sbjct: 70  YQDNSYKSLIAKL 82

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + AG + E GNT  +A K  ++      AV  +E          +  +    A       
Sbjct: 68  KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG---ANFKFELG 124

Query: 457 --CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
              +  L DY +A        +      +++    + +I+ ADL   +    +A +I   
Sbjct: 125 EILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183

Query: 515 NRDVKLEYKTLKEKMKEY 532
                +  +  +  +K+Y
Sbjct: 184 LIKSSMGNRLSQWSLKDY 201

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 356 SAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKY 415
               Q+ L  + P+          +F +  +      ++ +  A +   +         Y
Sbjct: 179 PQRMQETLQKILPHRGALLT----NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA--------------CNLNNAACKLKL 461
           ARA    EKA+  I   +    +EK+ A                         A   L  
Sbjct: 235 ARA----EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290

Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL- 520
               ++ +     +DL+  +        + Y        A      A  + P    +   
Sbjct: 291 GKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349

Query: 521 -------EYKTLKEKMKEYNKKE 536
                      +   + ++   E
Sbjct: 350 ENGIFQTSVPYVVPYLDKFLASE 372

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                   KY  A+     A+   E   + G +         VA  LNN A    K   Y
Sbjct: 76  ALVYRDQNKYKDAANLLNDALAIRE--KTLGKDH------PAVAATLNNLAVLYGKRGKY 127

Query: 465 KQAEKLCTKVLDLDSRNV---------KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           K+AE LC + L++    V         K L   A         +  E+  ++ALEI
Sbjct: 128 KEAEPLCKRALEI-REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           NL NA    K  DY +A +   K L+LD  N +A Y    AY +  D D A    +KALE
Sbjct: 14  NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 511 IDPDN 515
           +DP+N
Sbjct: 72  LDPNN 76

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL-KLKDY 464
            +   K GKY  A   Y++ +    ++  FG                 +A  +       
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRA-HEKEFGSVN------GDNKPIWMHAEEREESKDKR 228

Query: 465 KQAEK-----LCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           + +          K   +DS  V   L      Y +   L+ A      A   
Sbjct: 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                   KY  A+     A+   E   + G +         VA  LNN A    K   Y
Sbjct: 50  ALVYRDQNKYKEAAHLLNDALAIRE--KTLGKDH------PAVAATLNNLAVLYGKRGKY 101

Query: 465 KQAEKLCTKVLDLDSRNV---------KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           K+AE LC + L++    V         K L   A         +  E+  ++ALEI
Sbjct: 102 KEAEPLCKRALEI-REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	562
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.93
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.92
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.91
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.9
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.9
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.9
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.89
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.89
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.89
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.87
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.87
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.87
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.85
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.83
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.83
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.82
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.82
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.81
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.81
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.79
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.79
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.79
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.78
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.78
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.78
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.78
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.77
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.77
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.77
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.76
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.76
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.76
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.76
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.76
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.75
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.75
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.74
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.74
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.74
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.73
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.72
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.71
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.67
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.66
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.58
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.49
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.47
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.46
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.44
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.41
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.37
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.36
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.35
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.34
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.3
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.28
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.24
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.21
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.2
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.2
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.19
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.18
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.1
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.1
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.1
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.1
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.1
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.03
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.03
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.03
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.01
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.96
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.94
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.93
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.92
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.9
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.9
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.89
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.88
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.85
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.85
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.85
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.84
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.84
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.84
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.83
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.83
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.82
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.8
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.79
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.76
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.76
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.74
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.73
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.73
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.65
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.61
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.6
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.58
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.55
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.55
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.52
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.51
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.5
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.46
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.39
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.36
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.31
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.27
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.25
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.17
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.14
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.12
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.07
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.07
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.03
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.9
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.88
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.85
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.76
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.73
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.6
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.39
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.3
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.23
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.13
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.89
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.51
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.31
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.22
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.88
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.67
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	95.22
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.73
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	94.64
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.63
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.52
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.51
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.84
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.84
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.24
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.42
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.27
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	89.09
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.0
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.81
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.14
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.61
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	85.87
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	85.48
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	85.17
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	83.97
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	83.66
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	82.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	82.63
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	82.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	81.81
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	81.37
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.07

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=3.7e-66  Score=526.92  Aligned_cols=355  Identities=81%  Similarity=1.270  Sum_probs=222.4

Q ss_pred             cCcceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccc
Q 008540           27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG  106 (562)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~G  106 (562)
                      +++++.+++++|++|+++++|+|+..|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||+++|.+|++|
T Consensus         1 ~~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~G   80 (356)
T 3jxv_A            1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKG   80 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence            46788899999999999999999778999999999999999999999999987789999999999999999999999999


Q ss_pred             cEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCC
Q 008540          107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG  186 (562)
Q Consensus       107 e~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g  186 (562)
                      ++++|+|||++|||+.+.++.||++++|+|+|+|++|..+.++..++.+.++++++|.|+.+|..|+.|++||+++++||
T Consensus        81 e~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dg  160 (356)
T 3jxv_A           81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDG  160 (356)
T ss_dssp             -------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS
T ss_pred             CEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCC
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceee
Q 008540          187 MVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI  266 (562)
Q Consensus       187 ~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~  266 (562)
                      ++|+++.+..|.+|.+++++||+.+|.+|++||+++|.|||+++||+.|.+.......|||+++|+|+|+|++|....++
T Consensus       161 t~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv  240 (356)
T 3jxv_A          161 TVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI  240 (356)
T ss_dssp             CEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEE
T ss_pred             CEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEeccccc
Confidence            99999999999999999999999999999999999999999999999998766666679999999999999999999999


Q ss_pred             cCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEE
Q 008540          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (562)
Q Consensus       267 ~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v  346 (562)
                      +.|++++++++++|.|..+|..|+.|+|||.+++.||++|+++.. .+..|++|.+|.+.+|+||+.+|..|++||++.|
T Consensus       241 ~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v  319 (356)
T 3jxv_A          241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV  319 (356)
T ss_dssp             STTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred             ccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence            999999999999999988999999999999999999999998753 4578999999999999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (562)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (562)
                      .|+|.++||+.+... ...||++++++|+|+|.++.+
T Consensus       320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            999999999886532 256899999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=8.4e-57  Score=477.05  Aligned_cols=386  Identities=36%  Similarity=0.637  Sum_probs=336.3

Q ss_pred             cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (562)
Q Consensus       151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp  226 (562)
                      .++++.++++++|.|...|..||.|+|||++++.+|++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            678999999999999777999999999999999999999986    6999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEE
Q 008540          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF  306 (562)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~  306 (562)
                      |+++||+.|.+     +.|||+++|+|+|+|++|.. .++..|++++++++++|.|..+|..|+.|+|||.+++ +|++|
T Consensus       109 ~~~~yg~~g~~-----~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f  181 (457)
T 1kt0_A          109 PEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMF  181 (457)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEE
T ss_pred             hHHhccccCCC-----CCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEE
Confidence            99999998875     67999999999999999987 5778899999999999999889999999999999999 89999


Q ss_pred             EecCCCCCcccEEEEcCCc---chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540          307 VKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (562)
Q Consensus       307 ~~~~~~~~~~~~~~~lg~~---~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (562)
                      +++       +++|.+|++   .++++|+.++..|++||++.+.++|.++|+..+...  ..||+++.+.|.++|..+.+
T Consensus       182 ~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~  252 (457)
T 1kt0_A          182 DCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  252 (457)
T ss_dssp             EEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG--GTBCTTCCEEEEEEEEEEEC
T ss_pred             ecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc--cCCCCCCEEEEEhhhhhccc
Confidence            863       489999987   489999999999999999999999999999988653  46899999999999999999


Q ss_pred             ccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540          384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (562)
Q Consensus       384 ~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (562)
                      ....|.+..+++...+..++.+|+.++++|+|.+|+..|++|+.+.+.......++.......+..+|+|+|.||+++++
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  332 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE  332 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999887777778888888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      |++|+.+|++||+++|+++++||++|.+|+.+++|++|+.+|++|++++|++..++..++.+..++.+..++++.+|++|
T Consensus       333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC
Q 008540          544 FAKMTEPKE  552 (562)
Q Consensus       544 f~~~~~~~~  552 (562)
                      |+++....+
T Consensus       413 f~k~~~~d~  421 (457)
T 1kt0_A          413 FKKFAEQDA  421 (457)
T ss_dssp             ---------
T ss_pred             Hhhhhhccc
Confidence            998866554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=1e-43  Score=376.55  Aligned_cols=376  Identities=31%  Similarity=0.493  Sum_probs=274.6

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      +++|++|+++++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.||++|++++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            68999999999999955599999999999999989999999988778999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecccc
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (562)
                      |++|||..+.++.||++++++|+|+|++|... ++..++.++++++..|.|+..|..|+.|++||++++ +|++|++ .+
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~-~~  185 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDC-RD  185 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEE-EE
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEec-Cc
Confidence            99999999998899999999999999999875 566888999999999999999999999999999999 8888886 57


Q ss_pred             eEEEecCC---CCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcc
Q 008540          195 VEFTVKDG---HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK  271 (562)
Q Consensus       195 ~~~~~g~~---~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~  271 (562)
                      ..|.+|.|   .++++|+.|+..|+.|+++.|.++|.++|+..|.+    ...|||++.+.|.+.+.+|.........  
T Consensus       186 ~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~----~~~ip~~~~l~y~~~l~~~~~A~~~~~~--  259 (457)
T 1kt0_A          186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFEKAKESWEM--  259 (457)
T ss_dssp             EEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG----GGTBCTTCCEEEEEEEEEEECCCCGGGS--
T ss_pred             eEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc----ccCCCCCCEEEEEhhhhhcccCcchhhc--
Confidence            89999976   48999999999999999999999999999988864    2358999999999999987652211100  


Q ss_pred             eEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEEEEcC
Q 008540          272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAP  350 (562)
Q Consensus       272 v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v~i~~  350 (562)
                          .+.     ..|..   .    ..+..-|..             -+..|+. .-+..++.++...           +
T Consensus       260 ----~~~-----~~~~~---a----~~~~~~G~~-------------~~~~g~~~~A~~~y~~Al~~~-----------p  299 (457)
T 1kt0_A          260 ----DTK-----EKLEQ---A----AIVKEKGTV-------------YFKGGKYMQAVIQYGKIVSWL-----------E  299 (457)
T ss_dssp             ----CHH-----HHHHH---H----HHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHH-----------T
T ss_pred             ----CHH-----HHHHH---H----HHHHHHHHH-------------HHhCCCHHHHHHHHHHHHHHh-----------c
Confidence                000     00000   0    000000000             0111221 1233344443211           1


Q ss_pred             CCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008540          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (562)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~  430 (562)
                                       ....+         ..     ....+.....+..+.++|.++++.++|++|+..|++|+.+.|
T Consensus       300 -----------------~~~~~---------~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          300 -----------------MEYGL---------SE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             -----------------TCCSC---------CH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             -----------------ccccC---------Ch-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence                             00000         00     000122334467889999999999999999999999999987


Q ss_pred             hcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008540          431 YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI  505 (562)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~  505 (562)
                      .+.               .+|+++|.+|+++++|++|+.+|+++++++|++..+++.++.++..++++++|...+
T Consensus       349 ~~~---------------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~  408 (457)
T 1kt0_A          349 ANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI  408 (457)
T ss_dssp             TCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            643               348999999999999999999999999999999999999999999999999887543

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=3e-40  Score=322.68  Aligned_cols=223  Identities=44%  Similarity=0.760  Sum_probs=205.3

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      +++||+|+++++|+|...|..||.|+|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            68999999999999955599999999999999999999999987678999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccc--cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~--~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      |++|||+.+.++.||++++++|+|+|+++... ++.  .++++.++++++|+|...+..||.|++||++++ +|++|++ 
T Consensus       129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~-  205 (280)
T 1q1c_A          129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQ-  205 (280)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEE-
T ss_pred             cHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEec-
Confidence            99999999988899999999999999999864 443  788999999999999878999999999999998 8888887 


Q ss_pred             cceEEEecCCC---CcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccce
Q 008540          193 DGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS  264 (562)
Q Consensus       193 ~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  264 (562)
                      .++.|.+|.++   +++||+++|.+|++||++.|.|||+++||+.+.+.    ..|||+++|+|+|+|+++....
T Consensus       206 ~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~----~~IP~~~~l~f~V~L~~i~~~~  276 (280)
T 1q1c_A          206 RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAK  276 (280)
T ss_dssp             EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG----GTBCTTCCEEEEEEEEEEECCC
T ss_pred             CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc----CccCCCCeEEEEEEEEEEeCCC
Confidence            68999999987   59999999999999999999999999999887641    2599999999999999987643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=4e-37  Score=312.81  Aligned_cols=276  Identities=39%  Similarity=0.721  Sum_probs=257.2

Q ss_pred             eeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcc---hhhHHHHHHhccCC
Q 008540          264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKK  340 (562)
Q Consensus       264 ~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~---v~~gle~~l~~M~~  340 (562)
                      .+++.|++++|+|+++|.|..+|..|+.|+|||.+++ +|++||++       |++|.+|.+.   ++++|+.+|..|++
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~~   90 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRMEK   90 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCCC
Confidence            5567799999999999999878999999999999999 89999864       7999999886   58999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHH
Q 008540          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK  420 (562)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~  420 (562)
                      ||++.+.++|+++||..+...  ..||+++.+.|.++|.++.+....|.+..+.....+..+..+|+.+++.|+|++|+.
T Consensus        91 Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~  168 (336)
T 1p5q_A           91 GEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALL  168 (336)
T ss_dssp             TCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999988653  258999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008540          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL  500 (562)
Q Consensus       421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~  500 (562)
                      .|++|+.+.|.......+...........+++|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|++++
T Consensus       169 ~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  248 (336)
T 1p5q_A          169 QYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL  248 (336)
T ss_dssp             HHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            99999999998876667777888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540          501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE  549 (562)
Q Consensus       501 A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~  549 (562)
                      |+.+|++|++++|++..++..++.+...+.+..++++.+|++||+++..
T Consensus       249 A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999987643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=6.9e-38  Score=318.66  Aligned_cols=277  Identities=34%  Similarity=0.532  Sum_probs=212.4

Q ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecC-CcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEE
Q 008540          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (562)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~-g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v  346 (562)
                      +.++.++|+++|.|. .|..|+.|+|||.+++.+ |++|+++..  ++.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~  124 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence            567999999999995 899999999999999985 999998642  468999999999 899999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEeeeeec---cccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHH
Q 008540          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE---KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE  423 (562)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~---~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~  423 (562)
                      +|++.++||..+... .+.||+++++.|.++|..+...   ...|.++.+++++.+..++.+|+.+++.|+|.+|+..|+
T Consensus       125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~  203 (338)
T 2if4_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE  203 (338)
T ss_dssp             EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred             EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999987632 2469999999999999988764   347889999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC--CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008540          424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA  501 (562)
Q Consensus       424 ~al~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A  501 (562)
                      +|+.+.+.+.  ............++..+|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|
T Consensus       204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A  283 (338)
T 2if4_A          204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA  283 (338)
T ss_dssp             HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999987643  12223334455566678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540          502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE  549 (562)
Q Consensus       502 ~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~  549 (562)
                      +.+|++|++++|++..++..|..+..+.....++++++|++||+....
T Consensus       284 ~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             HHHHHHTTC---------------------------------------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999888888888889999999976543

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=3.6e-37  Score=313.38  Aligned_cols=221  Identities=38%  Similarity=0.685  Sum_probs=206.5

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      .+.++.++++++|.|+..|..||.|.|||++++.||++|+++    .++.|.+|.+++++||+.||.+|++||+++|+||
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~  200 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK  200 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence            568999999999999999999999999999999999999988    4799999999999999999999999999999999


Q ss_pred             CCCccCCCCCCC-----CCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEe
Q 008540          115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV  189 (562)
Q Consensus       115 ~~~~yg~~~~~~-----~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~  189 (562)
                      |+++||+.+.++     .||+++.|.|+|+|++|..+.++..+..+.++++++|.|+..|..||.|++||++++.+|++|
T Consensus       201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f  280 (356)
T 3jxv_A          201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF  280 (356)
T ss_dssp             GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred             hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence            999999998764     699999999999999999988999999999999999999999999999999999999999999


Q ss_pred             ecc-----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540          190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       190 ~~~-----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (562)
                      +++     +|+.|.+|.+++++||+++|.+|++||++.|.|||++|||+.+...   ...||||++|+|+|+|++|..
T Consensus       281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEES---SSEECTTCCEEEEEEEEEEEC
T ss_pred             eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCC---CCcCCcCCeEEEEEEEEEEEc
Confidence            865     6899999999999999999999999999999999999999876421   146899999999999999853

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=2.5e-36  Score=294.90  Aligned_cols=223  Identities=37%  Similarity=0.671  Sum_probs=203.0

Q ss_pred             cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (562)
Q Consensus       151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp  226 (562)
                      .++++.++++++|.|...|..||.|++||++++.+|++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            678999999999999777999999999999999999999986    6899999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeec--CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCc
Q 008540          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT  304 (562)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~  304 (562)
                      |++|||+.|.+     +.|||+++|+|+|+|++|.. .++.  .|+++.++++++|.|...|..|+.|+|||.+++ +|+
T Consensus       129 p~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~  201 (280)
T 1q1c_A          129 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK  201 (280)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE
T ss_pred             cHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCE
Confidence            99999998875     57999999999999999986 5666  789999999999999878999999999999998 899


Q ss_pred             EEEecCCCCCcccEEEEcCCcc---hhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540          305 VFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (562)
Q Consensus       305 ~~~~~~~~~~~~~~~~~lg~~~---v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (562)
                      +|++       .+++|.+|.+.   +|+||+.+|.+|++||++.|.||++|+||..+...  ..||+++++.|+|+|.++
T Consensus       202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i  272 (280)
T 1q1c_A          202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF  272 (280)
T ss_dssp             EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEE
Confidence            9975       37999999997   59999999999999999999999999999876542  259999999999999999


Q ss_pred             eecccccc
Q 008540          382 EKEKESWD  389 (562)
Q Consensus       382 ~~~~~~~~  389 (562)
                      ...++.|+
T Consensus       273 ~~~~~~W~  280 (280)
T 1q1c_A          273 EKAKESWE  280 (280)
T ss_dssp             ECCCC---
T ss_pred             eCCCCCCC
Confidence            99888884

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.93  E-value=3.6e-26  Score=232.15  Aligned_cols=291  Identities=20%  Similarity=0.268  Sum_probs=173.3

Q ss_pred             ccCcceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcC-CCEEeecCCCCCcEEEEcCCC-ccchhHHHHHccc
Q 008540           26 MKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGWDIGIKTM  103 (562)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~-g~~~~~t~~~~~p~~~~~g~~-~~~~g~~~~l~gm  103 (562)
                      .++.....++++|+.++++++|.| ..|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ ++|+||+++|.||
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m  116 (338)
T 2if4_A           38 PKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASM  116 (338)
T ss_dssp             CCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHC
T ss_pred             CCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcC
Confidence            356666677899999999999999 7899999999999999985 999999976668999999999 8999999999999


Q ss_pred             ccccEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEE
Q 008540          104 KKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEA  181 (562)
Q Consensus       104 ~~Ge~~~v~ip~~~~yg~~~~--~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~  181 (562)
                      ++|++++|+|||+++||..+.  .+.||++++++|.|+|+++....+..             .                 
T Consensus       117 ~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~-------------~-----------------  166 (338)
T 2if4_A          117 KSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK-------------A-----------------  166 (338)
T ss_dssp             CBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCB-------------T-----------------
T ss_pred             CCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcccc-------------c-----------------
Confidence            999999999999999999887  36789999999999887776421100             0                 


Q ss_pred             EeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          182 RLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       182 ~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                                           .+-..+++-+..                                             . 
T Consensus       167 ---------------------~~~~~~~~~~~~---------------------------------------------a-  179 (338)
T 2if4_A          167 ---------------------RSDMTVEERIGA---------------------------------------------A-  179 (338)
T ss_dssp             ---------------------TTBCCHHHHHHH---------------------------------------------H-
T ss_pred             ---------------------cccCCHHHHHHH---------------------------------------------H-
Confidence                                 000000000000                                             0 


Q ss_pred             cceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCC
Q 008540          262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKK  340 (562)
Q Consensus       262 ~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~  340 (562)
                        ..                                 +..-|...             +..|+. .-+..++.++.....
T Consensus       180 --~~---------------------------------~~~~g~~~-------------~~~g~~~~A~~~y~~Al~~~p~  211 (338)
T 2if4_A          180 --DR---------------------------------RKMDGNSL-------------FKEEKLEEAMQQYEMAIAYMGD  211 (338)
T ss_dssp             --HH---------------------------------HHHHHHHT-------------CSSSCCHHHHHHHHHHHHHSCH
T ss_pred             --HH---------------------------------HHHHHHHH-------------HhcCCHHHHHHHHHHHHHHhcc
Confidence              00                                 00001100             001111 223345555432110


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHH
Q 008540          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK  420 (562)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~  420 (562)
                      ..          .|...+..                              ......-....+.++|..+++.++|++|+.
T Consensus       212 ~~----------~~~~~~~~------------------------------~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          212 DF----------MFQLYGKY------------------------------QDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HH----------HHTCCHHH------------------------------HHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             ch----------hhhhcccH------------------------------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            00          00000000                              000011122467899999999999999999


Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCHH
Q 008540          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY-IQMADLD  499 (562)
Q Consensus       421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~-~~l~~~~  499 (562)
                      .|++|+.+.|.+.               .+|+++|.+|+.+++|++|+.+++++++++|++..++..++.+. ...+..+
T Consensus       252 ~~~~al~~~p~~~---------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          252 HCNIVLTEEEKNP---------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999877543               34899999999999999999999999999999999999999984 4567788


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 008540          500 LAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       500 ~A~~~~~~al~l~p~~~~  517 (562)
                      .|...|++++.++|++..
T Consensus       317 ~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHhhCCCCCCCC
Confidence            999999999999998854

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.92  E-value=2.8e-24  Score=181.22  Aligned_cols=111  Identities=51%  Similarity=0.889  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v  111 (562)
                      +++++|++|+++++|+| .. ++.||.|.|||++++.||++|++++..+.|+.|.+|.+++++||++||.+|++|++++|
T Consensus         2 ~~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v   80 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL   80 (113)
T ss_dssp             EECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE
T ss_pred             CCCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence            35789999999999999 55 99999999999999999999999987668999999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       112 ~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      .|||++|||+.+.++.||++++++|+|+|++++
T Consensus        81 ~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           81 TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             EECHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            999999999999888899999999999998873

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=5e-24  Score=181.51  Aligned_cols=109  Identities=46%  Similarity=0.832  Sum_probs=102.1

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCC-------CCcEEEEcCCCccchhHHHHHccccccc
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~-------~~p~~~~~g~~~~~~g~~~~l~gm~~Ge  107 (562)
                      .|+|++|+++++|+|...|+.||.|.|||++++.||++|++++..       +.|+.|.+|.+++++||++||.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            589999999999999657999999999999999999999999752       4799999999999999999999999999


Q ss_pred             EEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEeEe
Q 008540          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW  143 (562)
Q Consensus       108 ~~~v~ip~~~~yg~~~~~~-~ip~~~~l~~~vel~~~  143 (562)
                      +++|+|||++|||+.+.++ .||++++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999999864 79999999999999986

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=5.1e-24  Score=187.01  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.9

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      .++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||+++|.+|++|++++|+||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            68999999999999955899999999999999999999999987778999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      |++|||..+.++.||++++|+|+|+|++|..
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEecC
Confidence            9999999999889999999999999999863

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=4.1e-24  Score=184.00  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.4

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      .++|++|+++++|+|...|+.||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            78999999999999955789999999999999999999999976668999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      |++|||+.+.++.||++++|+|+|+|+++..
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence            9999999999889999999999999999864

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=4.4e-24  Score=185.37  Aligned_cols=112  Identities=55%  Similarity=0.988  Sum_probs=105.4

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      +++|++|+++++|+|...++.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            68999999999999955799999999999999999999999976558999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~  146 (562)
                      |++|||+.+.++.||++++++|+|+|+++...
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence            99999999988899999999999999999864

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.91  E-value=1.1e-23  Score=181.87  Aligned_cols=110  Identities=53%  Similarity=0.881  Sum_probs=104.8

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| ..++.||.|+|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999876789999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      |||++|||+.+.++.|||+++++|+|+|+++
T Consensus       103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            9999999999988889999999999999874

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=1.3e-23  Score=175.32  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=100.2

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCC
Q 008540           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (562)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~  117 (562)
                      |++|+++++|+|...++.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            78999999999944499999999999999999999999976557999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       118 ~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |||+.+.++.||++++++|+|+|+++.
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            999999888899999999999998863

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=2.9e-23  Score=188.67  Aligned_cols=130  Identities=29%  Similarity=0.552  Sum_probs=114.5

Q ss_pred             CCCCCCcCccCcceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEcCCC-ccchh
Q 008540           18 DLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKG   95 (562)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~~~~g~~-~~~~g   95 (562)
                      -+++.+.+.+.......+++|++|+++++|+| ..|..||.|+|||++++. +|++|++++.++.|+.|.+|.+ ++++|
T Consensus        30 ~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G  108 (180)
T 2f4e_A           30 PSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAG  108 (180)
T ss_dssp             ----CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHH
T ss_pred             CCCcccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHH
Confidence            33444555566677788999999999999999 789999999999999998 6999999987778999999999 99999


Q ss_pred             HHHHHcccccccEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEeEeeeccc
Q 008540           96 WDIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD  148 (562)
Q Consensus        96 ~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~--~~~ip~~~~l~~~vel~~~~~~~~  148 (562)
                      |+++|.+|++|++++|+|||++|||..+.  ++.||++++++|+|+|+++..+..
T Consensus       109 ~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e  163 (180)
T 2f4e_A          109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE  163 (180)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred             HHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence            99999999999999999999999999986  468999999999999999986543

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.90  E-value=1.3e-23  Score=180.82  Aligned_cols=113  Identities=54%  Similarity=0.963  Sum_probs=104.7

Q ss_pred             eeeecCCCeEEE--EEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccE
Q 008540           31 EKEIGNQGLKKK--LVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN  108 (562)
Q Consensus        31 ~~~~~~~g~~~~--~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~  108 (562)
                      .+..+++|++|+  ++++|+|...++.||.|+|+|++++.||++|++++..+.|+.|.+|.+++++||+++|.+|++|++
T Consensus        16 ~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~   95 (130)
T 2lgo_A           16 TQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEK   95 (130)
T ss_dssp             SCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEE
T ss_pred             cceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence            345588999999  999999943399999999999999989999999987668999999999999999999999999999


Q ss_pred             EEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540          109 AVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       109 ~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      ++|.|||++|||+.+.++.||++++++|+|+|+++
T Consensus        96 ~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           96 ALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EEEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999999988889999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.9e-24  Score=185.47  Aligned_cols=124  Identities=35%  Similarity=0.639  Sum_probs=103.9

Q ss_pred             CCCCcCccCccee--eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEcCCCccchhH
Q 008540           20 PDDAPMMKVGEEK--EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGW   96 (562)
Q Consensus        20 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~~~~g~~~~~~g~   96 (562)
                      +...|+..++.+.  .++++|++|+++++|+| ..+..||.|+|||++++. +|++|++++.++.|+.|.+|.+++++||
T Consensus         7 ~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~   85 (134)
T 3b7x_A            7 PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGM   85 (134)
T ss_dssp             --CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHH
T ss_pred             CCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHH
Confidence            3355666655554  34899999999999999 778899999999999998 6999999987668999999999999999


Q ss_pred             HHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540           97 DIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus        97 ~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      ++||.+|++|++++|+|||++|||+.+.++.||++++++|+|+|+++.
T Consensus        86 e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           86 ELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            999999999999999999999999999888899999999999999875

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.90  E-value=5.3e-23  Score=176.59  Aligned_cols=111  Identities=38%  Similarity=0.668  Sum_probs=103.9

Q ss_pred             eecCCCeEEEEEEccc--CCCCCCCCCEEEEEEEEEEc-CCCEEeecCC--CCCcEEEEcCCCccchhHHHHHccccccc
Q 008540           33 EIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~--G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~--~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge  107 (562)
                      +++++|++|+++++|+  | ..++.||.|.|||++++. ||++|++++.  .+.|+.|.+|.+++++||++||.+|++|+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             EECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            4589999999999999  6 889999999999999998 9999999973  35899999999999999999999999999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       108 ~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      +++|.|||++|||+.+.+ .||++++|+|+|+|+++..
T Consensus        87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            999999999999999965 8999999999999999875

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=185.90  Aligned_cols=115  Identities=24%  Similarity=0.371  Sum_probs=97.9

Q ss_pred             ecCCCeEEEEEEcccCCC-CCCCCCEEEEEEEEEEc--CCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540           34 IGNQGLKKKLVKEGEGWD-TPENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~-~~~~gd~V~v~y~~~~~--~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      ++++||+|+++++|+|.. .+..||.|+|||++++.  ||++||||+.+++|+.|.+|.+++|+||++||.+|++|++++
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~   86 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQ   86 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEE
T ss_pred             ccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEE
Confidence            578999999999999932 23579999999999996  499999999999999999999999999999999999999999


Q ss_pred             EEecCCCccCCC--------CCCCC-----------------------------CCCCCcEEEEEEEeEeeeccc
Q 008540          111 FTIPPELAYGES--------GSPPT-----------------------------IPPNATLQFDVELLSWTSVKD  148 (562)
Q Consensus       111 v~ip~~~~yg~~--------~~~~~-----------------------------ip~~~~l~~~vel~~~~~~~~  148 (562)
                      |+|||++|||..        .....                             ++++++|+|+|||++|..+..
T Consensus        87 ~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           87 FLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             EECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             EEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            999999999921        00011                             233478999999999987654

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=3.4e-23  Score=185.14  Aligned_cols=112  Identities=43%  Similarity=0.696  Sum_probs=104.9

Q ss_pred             eeecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540           32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      ...+++|++|+++++|+| .. |..||.|+|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++
T Consensus        32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~  108 (167)
T 1jvw_A           32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR  108 (167)
T ss_dssp             EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence            456999999999999999 66 999999999999999999999999876689999995  89999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008540          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (562)
Q Consensus       111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~  146 (562)
                      |+|||++|||+.+.++.||||++|+|+|+|+++...
T Consensus       109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~  144 (167)
T 1jvw_A          109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG  144 (167)
T ss_dssp             EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred             EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC
Confidence            999999999999988899999999999999999853

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.89  E-value=9.2e-23  Score=188.96  Aligned_cols=106  Identities=34%  Similarity=0.616  Sum_probs=101.5

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| ..|..||.|+|||++++.||++|+++   +.|+.|.+|  ++||||+++|.+|++|++++|+
T Consensus       113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999   589999998  8999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |||++|||+.+.++.|||+++|+|+|+|+++.
T Consensus       187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999999999888899999999999999886

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.89  E-value=2e-22  Score=173.86  Aligned_cols=112  Identities=46%  Similarity=0.834  Sum_probs=101.4

Q ss_pred             eecCCCeE-EEEEEcc---cCCCCCCCCCEEEEEEEEEE-cCCCEEeecCCCCCcEEEEcCCCccchhHHHHHccccccc
Q 008540           33 EIGNQGLK-KKLVKEG---EGWDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (562)
Q Consensus        33 ~~~~~g~~-~~~~~~G---~G~~~~~~gd~V~v~y~~~~-~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge  107 (562)
                      .++++|+. ++++++|   +| ..++.||.|.|||++++ .||++|++++.++.|+.|.+|.+++++||+++|.+|++|+
T Consensus        11 ~~~~~g~~~~~il~~G~~g~g-~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge   89 (129)
T 2vn1_A           11 ELTADGGVIKTILKKGDEGEE-NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNE   89 (129)
T ss_dssp             ECSTTSSEEEEEEECCCCSGG-GSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             EECCCCCEEEEEEeCCCCCCC-CcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCC
Confidence            34666655 5689966   45 78999999999999999 6999999998766899999999999999999999999999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       108 ~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      +++|+|||++|||+.+.++.||++++++|+|+|+++..
T Consensus        90 ~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           90 KCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999999999998888999999999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.89  E-value=1.1e-22  Score=189.42  Aligned_cols=132  Identities=47%  Similarity=0.818  Sum_probs=113.8

Q ss_pred             CCCCcCCCCCCCCcC----ccCc-ceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEE
Q 008540           11 NEMDADMDLPDDAPM----MKVG-EEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF   85 (562)
Q Consensus        11 ~~~~~~~~~~~~~~~----~~~~-~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~   85 (562)
                      +.-|.....+++.-.    .+.+ .....+++|++|+++++|+| ..|..||.|.|||++++.||++|++++..+.|+.|
T Consensus        73 ~~Tpk~L~~ed~d~I~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f  151 (209)
T 3uf8_A           73 DQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAF  151 (209)
T ss_dssp             TCCTTTTTCCTTEEEEEECSCTTCCCCEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEE
T ss_pred             CCChHHhhhcccccchhhccccccccccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEE
Confidence            334455555553322    2222 22456899999999999999 77999999999999999999999999877789999


Q ss_pred             EcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540           86 TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (562)
Q Consensus        86 ~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~  143 (562)
                      .+|.+++++||++||.+|++|++++|.|||++|||+.+.++.||++++|+|+|+|+++
T Consensus       152 ~lG~g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          152 VLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             ETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EeCCCccchhHHHHHhCCCCCCEEEEEECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999999999999999999999999999999988889999999999999874

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=5e-23  Score=177.46  Aligned_cols=111  Identities=41%  Similarity=0.706  Sum_probs=103.4

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcc------ccc
Q 008540           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (562)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~g------m~~  105 (562)
                      ...+++|++|+++++|+| ..++.||.|+|||++++.||++|++++.+++|+.|.+|.+++++||+++|.|      |++
T Consensus         7 ~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~   85 (129)
T 1u79_A            7 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   85 (129)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence            456899999999999999 7899999999999999999999999986558999999999999999999999      999


Q ss_pred             ccEEEEEecCCCccCCCCCC-----CCCCCCCcEEEEEEEeEe
Q 008540          106 GENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW  143 (562)
Q Consensus       106 Ge~~~v~ip~~~~yg~~~~~-----~~ip~~~~l~~~vel~~~  143 (562)
                      |++++|.|||++|||+.+.+     +.||++++++|+|+|+++
T Consensus        86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999998863     479999999999999876

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.88  E-value=3.3e-22  Score=169.64  Aligned_cols=108  Identities=34%  Similarity=0.563  Sum_probs=100.4

Q ss_pred             eecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540           33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        33 ~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      .++++| ++|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++++
T Consensus         8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~   83 (118)
T 2awg_A            8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM   83 (118)
T ss_dssp             ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEE
Confidence            456777 999999999993 27999999999999999899999984    799999999999999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |.|||++|||+.+.++.||++++++|+|+|+++.
T Consensus        84 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           84 VTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999888899999999999999875

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=2.6e-22  Score=177.25  Aligned_cols=109  Identities=34%  Similarity=0.576  Sum_probs=101.8

Q ss_pred             eecCCCe-EEEEEEcccCCC--CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEE
Q 008540           33 EIGNQGL-KKKLVKEGEGWD--TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (562)
Q Consensus        33 ~~~~~g~-~~~~~~~G~G~~--~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~  109 (562)
                      .++++|+ +|+++++|+| .  .|..||.|+|||++++.||++|+++    .|+.|.+|.+++|+||+++|.+|++|+++
T Consensus        38 ~~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~  112 (157)
T 2jwx_A           38 DILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA  112 (157)
T ss_dssp             ESSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEE
T ss_pred             eECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEE
Confidence            4578886 8999999999 5  8999999999999999999999984    79999999999999999999999999999


Q ss_pred             EEEecCCCccCCCC-CCCCCCCCCcEEEEEEEeEeeec
Q 008540          110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSV  146 (562)
Q Consensus       110 ~v~ip~~~~yg~~~-~~~~ip~~~~l~~~vel~~~~~~  146 (562)
                      +|+|||++|||+.+ .++.||++++++|+|+|+++...
T Consensus       113 ~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          113 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             EEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             EEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            99999999999999 67789999999999999998864

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=1.9e-22  Score=187.21  Aligned_cols=111  Identities=36%  Similarity=0.624  Sum_probs=104.6

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEE
Q 008540           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (562)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v  111 (562)
                      ...+++|++|+++++|+| ..|..||.|+|||++++.||++|++++.++.|+.|.+|  ++||||+++|.+|++|++++|
T Consensus       101 v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v  177 (213)
T 1fd9_A          101 VVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEI  177 (213)
T ss_dssp             EEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             cEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEE
Confidence            456899999999999999 89999999999999999999999999876689999995  899999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       112 ~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      +|||++|||+.+.++.||++++++|+|+|+++..
T Consensus       178 ~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          178 YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            9999999999998788999999999999999874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.87  E-value=3.4e-22  Score=202.68  Aligned_cols=270  Identities=22%  Similarity=0.286  Sum_probs=196.4

Q ss_pred             cccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCC---CcchHHHHHhhccCCcEEEE
Q 008540          147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLL  223 (562)
Q Consensus       147 ~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~v  223 (562)
                      .+++.++++.+++++.|.|...|..|+.|+|||++++ +|++|+++ |+.|.+|.|.   ++++|+.||.+|+.|+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l   96 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   96 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEE
Confidence            4567789999999999999778999999999999999 89999886 8999999886   58999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCC
Q 008540          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG  303 (562)
Q Consensus       224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g  303 (562)
                      .|||+++||..|.+.    ..||+++++.|++.|.+|........      +.+.     ..|..   ...    +..-|
T Consensus        97 ~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~~------~a~~-----~~p~~---a~~----~~~~g  154 (336)
T 1p5q_A           97 YLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESWE------MNSE-----EKLEQ---STI----VKERG  154 (336)
T ss_dssp             EECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGGG------CCHH-----HHHHH---HHH----HHHHH
T ss_pred             EECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchhc------CCHH-----HHHHH---HHH----HHHHH
Confidence            999999999988741    25899999999999999865221110      0000     00000   000    00000


Q ss_pred             cEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          304 TVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      .             .-+..|+. .-+..++.++...                            |....+         .
T Consensus       155 ~-------------~~~~~g~~~~A~~~y~~Al~~~----------------------------p~~~~~---------~  184 (336)
T 1p5q_A          155 T-------------VYFKEGKYKQALLQYKKIVSWL----------------------------EYESSF---------S  184 (336)
T ss_dssp             H-------------HHHHHTCHHHHHHHHHHHHHHT----------------------------TTCCCC---------C
T ss_pred             H-------------HHHHCCCHHHHHHHHHHHHHHh----------------------------hccccC---------C
Confidence            0             00111221 1233344444221                            110000         0


Q ss_pred             eccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc
Q 008540          383 KEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK  462 (562)
Q Consensus       383 ~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~  462 (562)
                           .....+.....+..+.++|..+++.|+|++|+..|++|+++.|.+.               .+++++|.+|..++
T Consensus       185 -----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          185 -----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVN  244 (336)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHCC
Confidence                 0001122334467889999999999999999999999999987643               34899999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALE  510 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~  510 (562)
                      +|++|+.+++++++++|++..+++.+|.++..++++++| ...|++++.
T Consensus       245 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 556676664

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.87  E-value=7.6e-22  Score=184.45  Aligned_cols=108  Identities=49%  Similarity=0.915  Sum_probs=101.7

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| ..|..||.|+|||++++.||++|++++.++.|+.|.+|  ++||||+++|.+|++|++++|+
T Consensus       117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999877789999996  8999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |||+++||+.+.++ ||++++++|+|+|+++.
T Consensus       194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred             ECchhhcCcCCCCC-CCCCCEEEEEEEEEEeC
Confidence            99999999999875 99999999999999873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.87  E-value=6.1e-22  Score=178.36  Aligned_cols=154  Identities=29%  Similarity=0.392  Sum_probs=132.1

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHH
Q 008540          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (562)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~  468 (562)
                      .++++..+..++++|+.+|++|+|..|+..|++|+.+++...   ....+++.........+|+|+|.||+++++|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            457788999999999999999999999999999999966432   22345556667778889999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      .+|+++|+++|+++++|+++|.+|..+|++++|+.+|++|++++|++. .+...+..+..++++..+++++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999998 88999999999999999999999999996

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=6.7e-22  Score=171.59  Aligned_cols=113  Identities=34%  Similarity=0.539  Sum_probs=103.0

Q ss_pred             eeecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEE
Q 008540           32 KEIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (562)
Q Consensus        32 ~~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~  109 (562)
                      ..++++| ++|+++++|+|. ..++.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|+++
T Consensus        11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~   86 (135)
T 2d9f_A           11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA   86 (135)
T ss_dssp             EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEE
T ss_pred             cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence            3456777 999999999992 28999999999999999999999984    79999999999999999999999999999


Q ss_pred             EEEecCCCccCCCC-CCCCCCCCCcEEEEEEEeEeeeccc
Q 008540          110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD  148 (562)
Q Consensus       110 ~v~ip~~~~yg~~~-~~~~ip~~~~l~~~vel~~~~~~~~  148 (562)
                      +|.|||++|||+.+ .++.||++++++|+|+|+++....+
T Consensus        87 ~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           87 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             EEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             EEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            99999999999998 6778999999999999999987544

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.85  E-value=5.9e-21  Score=157.69  Aligned_cols=96  Identities=52%  Similarity=0.898  Sum_probs=90.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      ..++.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.+.++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            67899999999999998899999999876689999999999999999999999999999999999999999998888999


Q ss_pred             CCcEEEEEEEeEeeec
Q 008540          131 NATLQFDVELLSWTSV  146 (562)
Q Consensus       131 ~~~l~~~vel~~~~~~  146 (562)
                      +++++|+|+|+++...
T Consensus        84 ~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           84 GATLVFEVELLKIERR   99 (102)
T ss_dssp             TCCEEEEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEeccc
Confidence            9999999999998753

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.83  E-value=3.1e-20  Score=161.07  Aligned_cols=118  Identities=32%  Similarity=0.594  Sum_probs=100.9

Q ss_pred             cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (562)
Q Consensus       151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp  226 (562)
                      .++++.++++++|.|...+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            678999999999999767999999999999999999999986    7999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeec--CCcceEE
Q 008540          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIK  274 (562)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~--~d~~v~k  274 (562)
                      |++|||+.|.+     +.|||+++|+|+|+|+++.. .++.  .|++|+|
T Consensus        92 ~~~aYG~~g~~-----~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           92 SDYGYGDAGSP-----PKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             hHHcCCCCCCC-----CCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            99999998875     57999999999999999977 4666  6777765

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.83  E-value=7e-20  Score=160.58  Aligned_cols=114  Identities=39%  Similarity=0.619  Sum_probs=105.1

Q ss_pred             eeec--CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCC
Q 008540          264 SEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (562)
Q Consensus       264 ~~~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~G  341 (562)
                      +|++  .|++++++++++|.|..+|..|+.|+|||.+++.||++|+++.  .++.|++|.+|.+.+|+||+.+|.+|++|
T Consensus        27 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~G  104 (144)
T 3o5e_A           27 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKKG  104 (144)
T ss_dssp             EECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESG--GGTSCEEEETTSSSSCHHHHHHHTTCCBT
T ss_pred             ccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeec--ccCCCeEEEeCCCcccHHHHHHHhCCCCC
Confidence            5666  6899999999999997789999999999999999999999865  35789999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       342 E~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      |++.|.|+|.++||+.+..   +.||++++|.|+|+|+++.
T Consensus       105 e~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          105 EICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence            9999999999999998765   4799999999999999886

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.82  E-value=3.9e-19  Score=165.47  Aligned_cols=175  Identities=33%  Similarity=0.478  Sum_probs=140.3

Q ss_pred             EEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHHHH
Q 008540          373 HYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACN  451 (562)
Q Consensus       373 ~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~  451 (562)
                      .....+..+.+.++.|.++.+++...+..+...|+.++..|+|++|+..|.+|+.+.+........ .......+...++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            344556778889999999999999999999999999999999999999999999998876644332 2333455567889


Q ss_pred             hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      +|+|.||+++++|++|+.+|++++.++|++.++++++|.+|..+|++++|+.+|+++++++|++..++..+..+...+.+
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 008540          532 YNKKEAKFYGNMFAKM  547 (562)
Q Consensus       532 ~~~~~~~~~~~~f~~~  547 (562)
                      ..+.++..|++||+.-
T Consensus       172 ~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          172 ARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHC-------------
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999999854

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.82  E-value=1.4e-19  Score=164.42  Aligned_cols=127  Identities=35%  Similarity=0.503  Sum_probs=102.3

Q ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEE
Q 008540          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (562)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v  346 (562)
                      +.++.++++++|.|. .|..|+.|+|||.+++. +|++|+++..  ++.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus        48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v  124 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (180)
T ss_dssp             ETTEEEEEEECCBSC-CBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEE
T ss_pred             CCceEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEE
Confidence            457999999999995 89999999999999998 5999998753  568999999999 999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccc---cccCChHHHHHHH
Q 008540          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAA  399 (562)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~---~~~~~~~e~~~~a  399 (562)
                      .|+++++||..+... .+.||+++++.|+|+|+++....+   .|+|+.+||+..|
T Consensus       125 ~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            999999999887531 246999999999999999998777   8999999998876

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.81  E-value=2.4e-19  Score=154.13  Aligned_cols=110  Identities=39%  Similarity=0.613  Sum_probs=101.9

Q ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~  347 (562)
                      .|++++++++++|+|...|..++.|+|||.+++.||++|+++.  .++.|++|.+|.+.+++||+.+|..|++||++.|.
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~   94 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL   94 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecC--CCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE
Confidence            6889999999999997789999999999999999999999864  24689999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      |++.++||+.+..   ..||++++|.|+|+|+++.
T Consensus        95 ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           95 CKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             EChHHcCCCCCCC---CCcCCCCEEEEEEEEEEec
Confidence            9999999998765   4799999999999999886

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.81  E-value=4.1e-19  Score=150.97  Aligned_cols=111  Identities=41%  Similarity=0.624  Sum_probs=99.5

Q ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCC-----CCcccEEEEcCCcchhhHHHHHHhccCCCcE
Q 008540          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (562)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~-----~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~  343 (562)
                      +.++.++|+++|+|...|..|+.|+|||.+++.||++|+++...     ....|++|.+|.+.+++||+.+|..|++||+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            45799999999999778999999999999999999999987531     1248999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (562)
Q Consensus       344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (562)
                      +.|.|+++++||+.+...  ..||++++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEe
Confidence            999999999999987643  369999999999999876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=2.4e-19  Score=154.38  Aligned_cols=114  Identities=31%  Similarity=0.489  Sum_probs=107.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.+..++++|+.+|++|+|++|+..|++|+++.|.+..               +|+|+|.||.++|+|++|+.+|+++++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------------LYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999886543               489999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ++|+++.+|+++|.+|..+|++++|+.+|++|++++|+|.+++..|+.|
T Consensus        76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999888876

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.81  E-value=4.4e-20  Score=163.21  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             CCcceEEEEEecCCCCCC-CCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEE
Q 008540          268 DDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~-p~~~~~v~v~~~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~  344 (562)
                      .+.++.|+|+++|.|... +..|++|+|||.+++.|  |++||+++.  ++.|++|.||.+.+|+||+.+|.+|++||++
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~--rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA--RGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT--TTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc--CCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            367799999999999532 35799999999999954  999999864  7899999999999999999999999999999


Q ss_pred             EEEEcCCCccC
Q 008540          345 LLTIAPEYAFG  355 (562)
Q Consensus       345 ~v~i~~~~~yg  355 (562)
                      .|+|||+++||
T Consensus        86 ~~~ipp~laYG   96 (165)
T 2lkn_A           86 QFLCDIKHVVL   96 (165)
T ss_dssp             EEECCHHHHSS
T ss_pred             EEEECHHHhcC
Confidence            99999999999

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.79  E-value=3.7e-19  Score=156.88  Aligned_cols=138  Identities=16%  Similarity=0.141  Sum_probs=120.4

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ....+..+++.|+.+|+.|+|++|+..|++||++.|..+...   ..........+|+|+|.|+.++|+|++|+.+|+++
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            356788999999999999999999999999999999854321   00112233458999999999999999999999999


Q ss_pred             Hhc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          475 LDL-------DSRNVKAL----YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       475 l~~-------~p~~~ka~----~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      |++       +|++.++|    |++|.+|..+|++++|+.+|++|++++|++..+...+..+++.+.+..++
T Consensus        84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999       99999999    99999999999999999999999999999999999999988887776544

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.79  E-value=5.5e-19  Score=155.95  Aligned_cols=110  Identities=27%  Similarity=0.409  Sum_probs=99.8

Q ss_pred             cccCcceeEeeeecCccc-cCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecC
Q 008540          149 ICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP  227 (562)
Q Consensus       149 ~~~d~~~~k~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~  227 (562)
                      +..++.+.++++++|+|. ..+..||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|++++|.|||
T Consensus        39 ~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~  118 (157)
T 2jwx_A           39 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS  118 (157)
T ss_dssp             SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECG
T ss_pred             ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECc
Confidence            445566689999999983 4899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCCCCCCCCeEEEEEEeeccccc
Q 008540          228 QYGFGEKG-KSASGNEGAVPPNATLQIALELVSWKTV  263 (562)
Q Consensus       228 ~~~~g~~~-~~~~~~~~~ip~~~~l~~~v~l~~~~~~  263 (562)
                      +++||+.+ .+     +.||||++|+|+|+|+++...
T Consensus       119 ~~aYG~~g~~~-----~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          119 KYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             GGTTTTTCCSS-----SCCCTTCCEEEEEEEEEEEEC
T ss_pred             hhcCCcccccC-----CCcCCCCeEEEEEEEEEEEcc
Confidence            99999988 43     579999999999999998653

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.79  E-value=9e-19  Score=145.91  Aligned_cols=102  Identities=26%  Similarity=0.515  Sum_probs=94.1

Q ss_pred             ceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCC
Q 008540          154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY  229 (562)
Q Consensus       154 ~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~  229 (562)
                      ++.++++++|+|...+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.+.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            356789999999656999999999999999999999987    6999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          230 GFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       230 ~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      +||+.+.+     +.|||+++|+|+|+|+++
T Consensus        81 ayG~~~~~-----~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHP-----GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence            99998875     569999999999999875

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.78  E-value=1.2e-18  Score=147.68  Aligned_cols=109  Identities=28%  Similarity=0.422  Sum_probs=99.7

Q ss_pred             ccccCcceeEeeeecCccc-cCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540          148 DICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (562)
Q Consensus       148 ~~~~d~~~~k~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp  226 (562)
                      ++..++.+.++++++|.|. ..+..||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|+++.+.||
T Consensus         8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip   87 (118)
T 2awg_A            8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD   87 (118)
T ss_dssp             ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEEEC
Confidence            3456677899999999984 479999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      |++|||+.+.+     +.|||+++|+|+|+|+++.
T Consensus        88 ~~~ayG~~~~~-----~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           88 SKYCYGPQGRS-----PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             hHHccCCCCCC-----CccCCCCeEEEEEEEEEec
Confidence            99999998875     5799999999999998863

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.78  E-value=1.4e-18  Score=146.14  Aligned_cols=104  Identities=25%  Similarity=0.450  Sum_probs=95.9

Q ss_pred             CcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecC
Q 008540          152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP  227 (562)
Q Consensus       152 d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~  227 (562)
                      +.++.++++++|+|...+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.|||
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~   84 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG   84 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence            45788999999999555999999999999999999999987    58999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       228 ~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      +++||+.+.+     +.|||+++|+|+|+|+++
T Consensus        85 ~~ayG~~~~~-----~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           85 PYAYGPRGFP-----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGTTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             HHCcCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence            9999998875     569999999999999875

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.78  E-value=6.4e-19  Score=152.55  Aligned_cols=115  Identities=29%  Similarity=0.497  Sum_probs=97.5

Q ss_pred             cceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCC
Q 008540          262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (562)
Q Consensus       262 ~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~  340 (562)
                      .+.+++.++++.++++++|.|. .+..++.|+|||.+++. +|++|+++..  +..|++|.+|.+.+++||+.+|..|++
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~--~~~p~~f~lG~g~~i~G~e~aL~gm~~   94 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYF--RKTPRLMKLGEDITLWGMELGLLSMRR   94 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred             ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCC--CCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence            3467888999999999999995 57789999999999998 6999998652  468999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      ||++.|.||++++||+.+..   +.||+++++.|+|+|+++.
T Consensus        95 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           95 GELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHHCcCCCCCC---CCcCcCCeEEEEEEEEEEe
Confidence            99999999999999998764   3599999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.78  E-value=4.4e-18  Score=146.57  Aligned_cols=115  Identities=38%  Similarity=0.633  Sum_probs=101.9

Q ss_pred             eeecCCcceEEEEEecC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCC
Q 008540          264 SEITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (562)
Q Consensus       264 ~~~~~d~~v~k~il~~G-~g-~~~p~~~~~v~v~~~~~~-~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~  340 (562)
                      .+.++++.++++++++| .| ...|..|+.|+|||.+++ .+|++|+++..  +..|++|.+|.+.+++||+.+|..|++
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~--~~~p~~f~lG~g~~i~g~e~~l~gm~~   87 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD--RNVPFKFHLEQGEVIKGWDICVSSMRK   87 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG--TTCCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred             cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC--CCccEEEEeCCCCcCHHHHHHHhCCCC
Confidence            34567888999999988 55 368999999999999999 79999998752  468999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (562)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (562)
                      ||++.|.|+++++||+.+..   +.||+++++.|+|+|+++..
T Consensus        88 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           88 NEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHcCCCCCCC---CCcCCCCeEEEEEEEEEEec
Confidence            99999999999999988754   36999999999999998874

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.77  E-value=2.9e-18  Score=147.35  Aligned_cols=105  Identities=29%  Similarity=0.479  Sum_probs=94.6

Q ss_pred             cCcceeEe--eeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEE
Q 008540          151 KDGGIIKK--ILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA  224 (562)
Q Consensus       151 ~d~~~~k~--i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~  224 (562)
                      .+.++.++  ++++|+|...+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~   99 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT   99 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            34555555  9999999655999999999999999999999987    58999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       225 vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      |||+++||+.+.+     +.|||+++|+|+|+|+++
T Consensus       100 ip~~~aYG~~~~~-----~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          100 IPYQLAYGERGYP-----PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ECTTTSTTTTCCS-----TTSCSSCCEEEEEEEEEC
T ss_pred             ECcHHHCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence            9999999998875     569999999999999864

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.77  E-value=3e-19  Score=158.75  Aligned_cols=132  Identities=22%  Similarity=0.332  Sum_probs=100.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      .++.||.|+|||++++.||++||+|+..+.|+.|.+|.+++||||++||.||++|++++|.|||++|||+++        
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~--------   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS--------   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            588999999999999999999999987668999999999999999999999999999999999999999876        


Q ss_pred             CcEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      ..++..|..-.|.....+ ..|..+..-...|.   +......++.|++++||+|++.++.+.-
T Consensus        96 ~~lv~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v  158 (169)
T 4dt4_A           96 PDLIQYFSRREFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI  158 (169)
T ss_dssp             GGGEEEEEGGGGTTTCCC-CTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred             hHHEEEeCHHHCCCcCCC-CCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEE
Confidence            566666665555421111 11221111111121   1222335589999999999999887753

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.77  E-value=1.6e-18  Score=152.57  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=100.8

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP  129 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip  129 (562)
                      ..++.||.|++||++++. ||++|++|+.. .|+.|.+|.++++|||++||.||++|++++|.|||++|||+++      
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence            568899999999999998 99999999864 7999999999999999999999999999999999999999876      


Q ss_pred             CCCcEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       130 ~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                        ..+++.+....|. ... ...|..+......|.   +......++.|+++|||+|++.++.+.-
T Consensus        78 --~~~v~~v~~~~f~-~~~-~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  139 (151)
T 2kr7_A           78 --SSYLQEVPRDQFE-GIE-LEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRF  139 (151)
T ss_dssp             --SCEEEEEEGGGGT-TSC-CCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEE
T ss_pred             --cceEEEEcHHHcC-CCC-CccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEE
Confidence              5677777776661 111 112222221111121   1123335689999999999999987764

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.77  E-value=2.8e-18  Score=147.98  Aligned_cols=105  Identities=30%  Similarity=0.509  Sum_probs=96.8

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      ..+.++.++++++|.| ..+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.|
T Consensus        25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i  103 (133)
T 2y78_A           25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI  103 (133)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence            4567888999999998 68999999999999999999999986    689999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      ||+++||+.+.+     +.||||++|+|+|+|+++
T Consensus       104 p~~~aYG~~~~~-----~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          104 PPQLGYGARGAG-----GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             CGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred             CcHHhCCCCCCC-----CCCCCCCeEEEEEEEEEC
Confidence            999999998875     579999999999999863

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.76  E-value=7.3e-18  Score=172.84  Aligned_cols=155  Identities=35%  Similarity=0.599  Sum_probs=136.0

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (562)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (562)
                      +.++..+.+..++.+|+.++++|+|++|+..|++|+++.+... ....++..........+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5788899999999999999999999999999999999876532 111233334566678889999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +|+++|+++|++.++|+++|.+|..++++++|+.+|++|++++|++..++..+..+...+++.+++++.+|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999984

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.76  E-value=2.8e-18  Score=158.96  Aligned_cols=104  Identities=23%  Similarity=0.378  Sum_probs=96.6

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc-cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCC
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ  228 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~  228 (562)
                      +.+.++.++++++|+| ..|..||.|+|||++++.+|++|+++ .|+.|.+|  ++++||+++|.+|++|++++|+|||+
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp~  190 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSD  190 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECch
Confidence            4578899999999999 68999999999999999999999987 88899987  89999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          229 YGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       229 ~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      +|||+.|.+     +.||||++|+|+|+|+++.
T Consensus       191 lAYG~~g~~-----~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          191 QAYGAEGAG-----DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             hcCCCCCCC-----CCCCCCCeEEEEEEEEEEe
Confidence            999999885     5699999999999999874

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.76  E-value=4.7e-18  Score=145.62  Aligned_cols=115  Identities=21%  Similarity=0.368  Sum_probs=101.2

Q ss_pred             ecCCcceEEEEEecCCC-CCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcE
Q 008540          266 ITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (562)
Q Consensus       266 ~~~d~~v~k~il~~G~g-~~~p~~~~~v~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~  343 (562)
                      ...+.++.++++++|.+ ...|..|+.|+|||.+++. ||++|+++.......|++|.+|.+.+++||+.+|..|++||+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            34577899999999982 3789999999999999998 999999875212368999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeec
Q 008540          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (562)
Q Consensus       344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~  384 (562)
                      +.|.|++.++||+.+..    .||++++++|+|+|+++.+.
T Consensus        88 ~~~~ip~~~aYG~~g~~----~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           88 RKLIIPPALGYGKEGKG----KIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             EEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEECC
T ss_pred             EEEEEChHHhcCCCCCC----CCCCCCeEEEEEEEEEEEcC
Confidence            99999999999998743    69999999999999998753

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.76  E-value=3.8e-19  Score=165.86  Aligned_cols=169  Identities=23%  Similarity=0.288  Sum_probs=115.3

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCcc
Q 008540           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (562)
Q Consensus        53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~-------------~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~y  119 (562)
                      ++.||.|+|||++++ ||++||+|+..             +.|+.|.+|.++++|||++||.||++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecccceEEEe
Q 008540          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTV  199 (562)
Q Consensus       120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~  199 (562)
                      |+++        ..++..+..-.|.........|..+. . ....|......++.|++++||+|+|.++.+.-+-....-
T Consensus        81 Ge~~--------~~lv~~vp~~~f~~~~~~~~vG~~~~-~-~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~e  150 (231)
T 3prb_A           81 GKRD--------PSKIKLIPLSEFTKRGIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD  150 (231)
T ss_dssp             CCCC--------GGGEEEEETHHHHTTTCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECC
T ss_pred             CCCC--------hHHEEecCHHHCCcccCCCCCCcEEE-e-cCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEec
Confidence            9887        45555555444432100011122111 0 001133334456899999999999999987653333322


Q ss_pred             cCCCCcchHHHHHhh----cc---CCcEEEEEecCCCccC
Q 008540          200 KDGHFCPTLAKAVKT----MK---KGEKVLLAVKPQYGFG  232 (562)
Q Consensus       200 g~~~~~~gl~~~l~~----m~---~Ge~~~v~vp~~~~~g  232 (562)
                      ...+-+.++-.-..+    |+   .++++.|.+|+...|-
T Consensus       151 at~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~  190 (231)
T 3prb_A          151 DKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFI  190 (231)
T ss_dssp             SHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGGS
T ss_pred             CCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhhh
Confidence            222222232222221    22   4678888889887653

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.76  E-value=4e-19  Score=156.49  Aligned_cols=128  Identities=27%  Similarity=0.390  Sum_probs=97.5

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCcc
Q 008540           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (562)
Q Consensus        53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~-------------~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~y  119 (562)
                      ++.||.|+|||++++ ||++||+|+..             +.|+.|.+|.+++||||++||.||++|++++|+|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEeEeeeccccc-cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          120 GESGSPPTIPPNATLQFDVELLSWTSVKDIC-KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~~~-~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      |+++        ..++..+....+... ++. ..|..+. . ....+......++.|++++||+|++.++.++-
T Consensus        81 G~~~--------~~~V~~v~~~~f~~~-~~~~~~G~~~~-~-~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v  143 (157)
T 3pr9_A           81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRI  143 (157)
T ss_dssp             CCCC--------GGGEEEEEHHHHHHT-TCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred             CCCC--------hHhEEEcCHHHCCcc-cCCcCCCcEEE-e-cCCCeEEEEEcCCEEEEECCCccCCCeEEEEE
Confidence            9877        456666655444321 111 1122211 1 11123334445689999999999999987764

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.4e-18  Score=149.13  Aligned_cols=110  Identities=28%  Similarity=0.418  Sum_probs=100.7

Q ss_pred             ccccCcceeEeeeecCccc-cCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540          148 DICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (562)
Q Consensus       148 ~~~~d~~~~k~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp  226 (562)
                      ++..++.+.++++++|.|. ..+..||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus        12 ~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip   91 (135)
T 2d9f_A           12 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD   91 (135)
T ss_dssp             ESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEEC
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEC
Confidence            3456677899999999983 489999999999999999999999989999999999999999999999999999999999


Q ss_pred             CCCccCCCC-CCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540          227 PQYGFGEKG-KSASGNEGAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       227 ~~~~~g~~~-~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (562)
                      |+++||+.+ .+     +.|||+++|+|+|+|+++..
T Consensus        92 ~~~aYG~~~~~~-----~~Ip~~~~l~f~vel~~v~~  123 (135)
T 2d9f_A           92 SKYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVD  123 (135)
T ss_dssp             HHHHTCTTCCSS-----SCCCTTCCEEEEEEEEEEES
T ss_pred             hhHccCcCCcCC-----CccCCCCeEEEEEEEEEeec
Confidence            999999887 43     57999999999999999865

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.75  E-value=1.2e-17  Score=149.19  Aligned_cols=122  Identities=25%  Similarity=0.406  Sum_probs=104.5

Q ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~  347 (562)
                      -+.++.++++++|+|...|..|+.|+|||.+++.||++|+++..  ++.|++|.+|  .+|+||+.+|.+|++||++.|.
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~~~  110 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKPTTFRPN--EVIKGWTEALQLMREGDRWRLF  110 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSCEEECGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEeC--chhHHHHHHHcCCCCCCEEEEE
Confidence            35679999999999964599999999999999999999998642  4589999994  7999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHH
Q 008540          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEA  398 (562)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~  398 (562)
                      ||+.++||..+..   +.||++++++|+|+|+++.+.  .+.++.++..+.
T Consensus       111 Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~~  156 (167)
T 1jvw_A          111 IPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDEI  156 (167)
T ss_dssp             ECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHHH
T ss_pred             ECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHHH
Confidence            9999999998754   469999999999999999853  455666665443

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.74  E-value=1.7e-17  Score=154.27  Aligned_cols=107  Identities=30%  Similarity=0.503  Sum_probs=98.8

Q ss_pred             ccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEE
Q 008540          148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLL  223 (562)
Q Consensus       148 ~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v  223 (562)
                      ..+.+.++.++++++|+| ..+..||.|+++|++++.+|++|+++    .|+.|.+|.+++++||+++|.+|++|+++.|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            455778899999999999 55999999999999999999999987    6899999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      .|||++|||+.|.+     +.||||++|+|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~-----~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAA-----GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence            99999999999875     569999999999999863

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.74  E-value=3.2e-19  Score=157.02  Aligned_cols=131  Identities=23%  Similarity=0.384  Sum_probs=96.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCc
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA  118 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~-------------~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~  118 (562)
                      +++.||.|+|||++++.||++|++|+.             ...|+.|.+|.++++|||++||.||++|++++|.|||++|
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a   80 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA   80 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence            367899999999999889999999963             2369999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       119 yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      ||+++        ..+++.|.+..|.........+..+. . ..-.+......++.|+++|||++++.++.++-
T Consensus        81 YG~~~--------~~~v~~v~~~~f~~~~~~~~~G~~~~-~-~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  144 (151)
T 1ix5_A           81 YGNRN--------EMLIQKIPRDAFKEADFEPEEGMVIL-A-EGIPATITEVTDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             SCSCC--------STTBCCEETHHHHTSTTCCCTTEEEE-S-SSCEEEEEEEETTEEEEECCCSSTTCCEEEEC
T ss_pred             CCCCC--------ccEEEEEEHHHcCccCCcccccCEEE-E-CCeEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            99876        45566666655542100011111110 0 00111122334589999999999999987753

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.74  E-value=4.9e-18  Score=154.92  Aligned_cols=130  Identities=18%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCC
Q 008540           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (562)
Q Consensus        53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~  132 (562)
                      ++.||.|+|+|++++.||++|++|+.. +|+.|.+|.+++||||++||.+|++|++++|+|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~--------~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC--------T
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC--------h
Confidence            678999999999998899999999864 7999999999999999999999999999999999999999876        4


Q ss_pred             cEEEEEEEeEeeeccccccCcceeEeeeecC--ccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      .+++.|....|.....+ ..+..+......|  .+..+...++.|+++|||+|++.++.|+-
T Consensus        74 ~lV~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v  134 (196)
T 2kfw_A           74 NLVQRVPKDVFMGVDEL-QVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNV  134 (196)
T ss_dssp             TTCEEECGGGCCCSSCC-CTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEE
T ss_pred             hhEEEEEHHHCCCccCc-ccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            45566655555321111 1222222111111  12244456789999999999999887763

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.73  E-value=1e-17  Score=144.12  Aligned_cols=110  Identities=19%  Similarity=0.342  Sum_probs=96.8

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhh------ccCCc
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE  219 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge  219 (562)
                      ..+.++.+++++.|.| ..+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+      |++|+
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            3456788999999998 67899999999999999999999986    6899999999999999999998      99999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       220 ~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      +++|.|||+++||+.+.+.......||||++|+|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999998875211112469999999999999875

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.72  E-value=1.8e-17  Score=148.36  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCC
Q 008540           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (562)
Q Consensus        53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~  132 (562)
                      ++.||.|+|+|++++.||++|++|+.. .|+.|.+|.++++|||++||.||++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~--------~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC--------T
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC--------h
Confidence            678999999999998899999999864 7999999999999999999999999999999999999999876        4


Q ss_pred             cEEEEEEEeEeeeccccccCcceeEeeeecCc--cccCCCCCCeEEEEEEEEeCCCeEeeccc
Q 008540          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE--KWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (562)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~--g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (562)
                      .+++.|....|.....+ ..+..+......|.  +......++.|+++||++|++.++.|+-+
T Consensus        74 ~~v~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~ve  135 (171)
T 2k8i_A           74 NLVQRVPKDVFMGVDEL-QVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVE  135 (171)
T ss_dssp             TSEEEEEGGGGTTSSCC-CTTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEE
T ss_pred             hhEEEeeHHHCCcccCc-cCCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEE
Confidence            55666655554321111 11111111111110  11222345899999999999999988653

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.71  E-value=4.7e-17  Score=150.98  Aligned_cols=104  Identities=28%  Similarity=0.464  Sum_probs=95.3

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      +.+.++.+++++.|+| ..|..||.|+|||.+++.+|++|+++    .|+.|.+  +++++||+++|.+|++|+++.|+|
T Consensus       103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I  179 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV  179 (213)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence            4567889999999999 78999999999999999999999987    6888988  589999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      ||+++||+.|.+     +.|||+++|+|+|+|+++.
T Consensus       180 P~~laYG~~g~~-----~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          180 PSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             CGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEE
T ss_pred             CchhccCccCCC-----CCCCCCCeEEEEEEEEEEE
Confidence            999999998864     5799999999999999875

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.70  E-value=5.2e-17  Score=133.87  Aligned_cols=91  Identities=25%  Similarity=0.445  Sum_probs=84.6

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008540          167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE  242 (562)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~  242 (562)
                      ..+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+.+.+     
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-----   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP-----   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-----
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-----
Confidence            46889999999999999999999986    689999999999999999999999999999999999999988774     


Q ss_pred             CCCCCCCeEEEEEEeecccc
Q 008540          243 GAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       243 ~~ip~~~~l~~~v~l~~~~~  262 (562)
                      +.|||+++|+|+|+|+++..
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGG
T ss_pred             CCcCcCCeEEEEEEEEEecc
Confidence            57999999999999999865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.69  E-value=1.5e-16  Score=136.92  Aligned_cols=115  Identities=24%  Similarity=0.355  Sum_probs=101.2

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ..+.|..+++.|+.+|++|+|++|+..|++|+++.|.+.               .+|+|+|.||+++|+|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------------~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------------TFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            356788899999999999999999999999999988654               34899999999999999999999999


Q ss_pred             HhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          475 LDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       475 l~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      |+++|++       .++|+++|.+|..++++++|+++|++++.++|+ +++...+..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            9998876       468999999999999999999999999999885 4555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.7e-16  Score=134.63  Aligned_cols=117  Identities=24%  Similarity=0.310  Sum_probs=108.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+..+|+.+++.|+|++|+..|++++++.|.+.               .+++++|.|+.++++|++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999988654               34899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~------p~~~~~~~~l~~l~~~~  529 (562)
                      +|++..+++++|.+|..+|++++|+.+|+++++++      |++..+...+..+..++
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999      99999999988876543

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.67  E-value=6.3e-17  Score=142.94  Aligned_cols=126  Identities=20%  Similarity=0.263  Sum_probs=96.5

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCC
Q 008540           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (562)
Q Consensus        53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~  132 (562)
                      ++.||.|+|||+++ .||++|++++     +.|.+|.++++|||++||.||++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence            67899999999999 8999999996     89999999999999999999999999999999999999876        5


Q ss_pred             cEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeeccc
Q 008540          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (562)
Q Consensus       133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (562)
                      .+++.|.+..|.....+ ..|..+......|.   +...-..++.|++++||++++.++.++-+
T Consensus        69 ~lv~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~ve  131 (158)
T 3cgm_A           69 EGVQVVPLSAFPEDAEV-VPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVE  131 (158)
T ss_dssp             GGEEEEEGGGSCTTSCC-CTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred             ceEEEEEHHHCCCCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEE
Confidence            77888877766431111 11221111111121   12233355899999999999999887653

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.66  E-value=9.9e-16  Score=143.05  Aligned_cols=104  Identities=32%  Similarity=0.546  Sum_probs=94.3

Q ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEE
Q 008540          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (562)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i  348 (562)
                      +.++..+++++|.| ..|..|+.|+|||.+++.||++|+++..  ++.|++|.+|  .+|+||+.+|..|++||++.|.|
T Consensus       120 ~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~I  194 (224)
T 1q6h_A          120 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  194 (224)
T ss_dssp             TTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             CCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccc--cCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEEE
Confidence            56789999999999 5899999999999999999999998753  5689999994  79999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (562)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (562)
                      |++++||..+..    .||++++++|+|+|+++
T Consensus       195 P~~laYG~~g~~----~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          195 PPELAYGKAGVP----GIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             CGGGTTTTTCBT----TBCTTCCEEEEEEEEEE
T ss_pred             CchhhcCcCCCC----CCCCCCEEEEEEEEEEe
Confidence            999999988753    39999999999999876

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.66  E-value=1.5e-16  Score=132.75  Aligned_cols=85  Identities=22%  Similarity=0.438  Sum_probs=76.0

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      ..++.||.|+|+|++++ ||++|+++.  +.|+.|.+|.+++||||+++|.||++|++++|.||+...||..+.     +
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~-----~   99 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----Q   99 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----G
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC-----C
Confidence            57899999999999998 999999996  489999999999999999999999999999999974444998763     5


Q ss_pred             CCcEEEEEEEeEe
Q 008540          131 NATLQFDVELLSW  143 (562)
Q Consensus       131 ~~~l~~~vel~~~  143 (562)
                      +++++|+|+|+++
T Consensus       100 g~~l~F~V~l~~V  112 (113)
T 1hxv_A          100 SKPVTFEVVLKAI  112 (113)
T ss_dssp             SCCCEEEEEECCB
T ss_pred             CCEEEEEEEEEEE
Confidence            7999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=3e-15  Score=134.52  Aligned_cols=121  Identities=23%  Similarity=0.222  Sum_probs=107.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|+.+++.|+|++|+..|++++++.|.+.               .+++++|.||+++++|++|+.+|+++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------------IYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999988643               3489999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD--VKLEYKTLKEKMKEY  532 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~--~~~~l~~l~~~~~~~  532 (562)
                      ++|++..+|+++|.+|..+|++++|+.+|+++++++|++..  +...+..++.++.+.
T Consensus        74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999977  555555555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.61  E-value=4.9e-15  Score=131.42  Aligned_cols=105  Identities=12%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.+..+...|..+++.|+|++|+..|++++.+.|.+...               |+++|.|+.++|+|++|+..|+++++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~---------------~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------IMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            456778999999999999999999999999998876544               89999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ++|+++.+|+++|.||..+|++++|+..|++|++++|+++
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=1.2e-14  Score=127.29  Aligned_cols=123  Identities=20%  Similarity=0.209  Sum_probs=109.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..+++.|+|++|+..|++++...|.+..               +++++|.|+.++|+|++|+..|++++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------------YFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34567788999999999999999999999999886543               388999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      ++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...+....+
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988777766666666555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.58  E-value=9.5e-15  Score=129.21  Aligned_cols=119  Identities=16%  Similarity=0.202  Sum_probs=105.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..+++.|+|++|+..|++++...|.+...               ++++|.|+.++|+|++|+..|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF---------------FLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            346678889999999999999999999999998865433               88999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.......++...+.
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998766555554444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.57  E-value=1.1e-14  Score=128.95  Aligned_cols=115  Identities=13%  Similarity=0.035  Sum_probs=100.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +....+...|+.|++.|+|++|+..|++|+++.|.+..               +|+++|.||.++|++++|+.+++++++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------------AHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            44566778999999999999999999999999887543               388999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFD-IKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~-~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ++|+++.+++++|.+|..++++++|... +++|++++|+|+.+......+.
T Consensus        94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            9999999999999999999999876655 6899999999998877766554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=1.5e-14  Score=125.20  Aligned_cols=120  Identities=29%  Similarity=0.391  Sum_probs=109.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|+|+.|+..|.+++.+.|.+.               .+++++|.|+.++++|++|+.+++++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999987643               348999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-----NRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~~~~~~~~  533 (562)
                      |+++.+++++|.+|..+|++++|+..|+++++++|+     +..+...+..+..+.....
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998     7788888888876665544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=6.7e-15  Score=130.49  Aligned_cols=125  Identities=15%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (562)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (562)
                      .|..+..+|++++|+..|.+++...|.....               ++++|.+|+++|+|++|+.+++++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            5778888999999999999999888765554               8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      |+++|.+|..+|++++|+..|+++++++|++..+...++.+.....+..++.+.++++..
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al  127 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA  127 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887777665444433444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.52  E-value=1.7e-13  Score=128.36  Aligned_cols=132  Identities=14%  Similarity=0.075  Sum_probs=108.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      +..+..+|..++..|+|++|+..|++++...|.+...... ...........+++++|.+|.++|+|++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999998864322000 000001112233445999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+.-...
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988764443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=4e-13  Score=119.73  Aligned_cols=123  Identities=24%  Similarity=0.395  Sum_probs=111.2

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH
Q 008540          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (562)
Q Consensus       392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (562)
                      .....+.+..+...|..++..|+|+.|+..|.+++...+.+.               .+++++|.++..+++|++|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence            356778899999999999999999999999999999877542               34889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      ++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+....
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  128 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  128 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887777664333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=1.7e-13  Score=114.21  Aligned_cols=114  Identities=23%  Similarity=0.265  Sum_probs=105.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|+.|+..|++++...|.+.               .+++++|.++.++++|++|+..++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            466788999999999999999999999999877543               34889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      +|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998888887764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.49  E-value=1.6e-13  Score=151.93  Aligned_cols=137  Identities=15%  Similarity=0.103  Sum_probs=79.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHH------HHHHHHHHHhcHHHH
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAAC  457 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~nla~~  457 (562)
                      +.+..+.+.|+.+.++|+|++|+..|++|+++.|.....             .++-...      +..-...+|+|+|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456777888888888888888888888888877654321             0000000      000112345555556


Q ss_pred             HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      +.++|++++|+.+|+++++++|++..+|+++|.+|..+|++++|++.|++|++++|++..+...++.+...+.+..
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            6566666666666666666556555566666666666666666666666666666665555555555555544433

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.49  E-value=5.2e-14  Score=125.02  Aligned_cols=82  Identities=20%  Similarity=0.351  Sum_probs=74.4

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG  243 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~  243 (562)
                      .+..|+.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+.         
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~---------   94 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP---------   94 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC---------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence            5778999999999999999999987    799999999999999999999999999999999999999954         


Q ss_pred             CCCCCCeEEEEEEeecccc
Q 008540          244 AVPPNATLQIALELVSWKT  262 (562)
Q Consensus       244 ~ip~~~~l~~~v~l~~~~~  262 (562)
                          +..+++.+....|..
T Consensus        95 ----~~~lv~~vp~~~f~~  109 (169)
T 4dt4_A           95 ----SPDLIQYFSRREFMD  109 (169)
T ss_dssp             ----CGGGEEEEEGGGGTT
T ss_pred             ----ChHHEEEeCHHHCCC
Confidence                455788888888853

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.47  E-value=6.1e-13  Score=112.92  Aligned_cols=123  Identities=30%  Similarity=0.326  Sum_probs=110.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      +.....+..+...|..++..|+|+.|+..|++++...+...               .++.++|.++..++++++|+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------------VYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhhchHHHHHHHH
Confidence            34456778899999999999999999999999999876532               348899999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999988888887765543

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.46  E-value=2.3e-13  Score=119.59  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=90.0

Q ss_pred             cCCCCCCeEEEEEEEEeC-CCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008540          167 ENPKDLDEVLVNYEARLE-DGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE  242 (562)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~  242 (562)
                      ..+..||.|++||++++. +|++|+++   .|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+.        
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~--------   76 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVY--------   76 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSS--------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCC--------
Confidence            456789999999999998 99999987   699999999999999999999999999999999999999954        


Q ss_pred             CCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCC---CCCCCCCCCEEEEEEEEEecCCcE
Q 008540          243 GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD---GFERPNEGAVVKVKLIGKLQDGTV  305 (562)
Q Consensus       243 ~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~---g~~~p~~~~~v~v~~~~~~~~g~~  305 (562)
                           +..+++.+....|.. . ....|..+..--..|.   +...-..++.|+|+|++.|++-++
T Consensus        77 -----~~~~v~~v~~~~f~~-~-~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L  135 (151)
T 2kr7_A           77 -----ESSYLQEVPRDQFEG-I-ELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTL  135 (151)
T ss_dssp             -----CSCEEEEEEGGGGTT-S-CCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCE
T ss_pred             -----CcceEEEEcHHHcCC-C-CCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEE
Confidence                 345888898888821 1 1222333322111121   111223456677777766654443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=6.7e-13  Score=113.28  Aligned_cols=116  Identities=10%  Similarity=0.086  Sum_probs=102.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..++..|+|++|+..|++++...|.+..            ...+++++|.|+.++|+|++|+..+++++..+|
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            45678899999999999999999999998876542            223488999999999999999999999999999


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ++   ..+++++|.+|..+|++++|+..|+++++.+|++..+......+..
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            99   8999999999999999999999999999999999877766665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=3.9e-13  Score=117.33  Aligned_cols=116  Identities=33%  Similarity=0.559  Sum_probs=105.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|+|..|+..|+++++..+..            .....+++++|.+|.++++|++|+..|++++.++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            5678899999999999999999999999876642            1235568999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      |++..+++++|.+|..+|++++|+..|+++++++|++..++..+..+.
T Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888877664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.46  E-value=1.5e-13  Score=116.93  Aligned_cols=102  Identities=13%  Similarity=0.057  Sum_probs=89.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+..+|..+++.|++++|+..|++++...|.+..               +++++|.++..+|++++|+..++++++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4678899999999999999999999999887543               3889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      +..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999998743

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=3.5e-13  Score=115.18  Aligned_cols=116  Identities=30%  Similarity=0.386  Sum_probs=105.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|+.|+..|++++...+.+.               .+++++|.++..++++++|+..++++++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------------KLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            366788999999999999999999999998876532               34889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      +|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888888776543

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.45  E-value=2.3e-13  Score=113.32  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=72.6

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCC
Q 008540          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEG  243 (562)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp-~~~~~g~~~~~~~~~~~  243 (562)
                      ..+..||.|+++|++++ +|++|+++  +|+.|.+|.++++|||+++|.+|++|+++.|.|| |+. ||..+.       
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~-------   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL-------   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-------
Confidence            36788999999999999 99999987  7999999999999999999999999999999996 553 886543       


Q ss_pred             CCCCCCeEEEEEEeecc
Q 008540          244 AVPPNATLQIALELVSW  260 (562)
Q Consensus       244 ~ip~~~~l~~~v~l~~~  260 (562)
                         ++++|+|+|+|+++
T Consensus        99 ---~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 ---QSKPVTFEVVLKAI  112 (113)
T ss_dssp             ---GSCCCEEEEEECCB
T ss_pred             ---CCCEEEEEEEEEEE
Confidence               56899999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=7.1e-13  Score=112.63  Aligned_cols=119  Identities=27%  Similarity=0.338  Sum_probs=106.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|+.|+..|.+++...+...               .+++++|.++..+++|++|+.++++++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            467788999999999999999999999999876532               34889999999999999999999999999


Q ss_pred             CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          478 DSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       478 ~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      .|.+       ..+++++|.+|..+|++++|+..|+++++++| +..+...+..+...+++.
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            9887       99999999999999999999999999999999 678888888877666543

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.44  E-value=1e-13  Score=121.94  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=70.3

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~  231 (562)
                      ...||.|++||++++ +|++|+++                 +|+.|.+|.+++++||++||.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            467899999999999 99999986                 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      |+.+.             .+++.+....|.
T Consensus        81 G~~~~-------------~~V~~v~~~~f~   97 (157)
T 3pr9_A           81 GKRDP-------------SKIKLIPLSEFT   97 (157)
T ss_dssp             CCCCG-------------GGEEEEEHHHHH
T ss_pred             CCCCh-------------HhEEEcCHHHCC
Confidence            96544             467777777764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=1.1e-12  Score=124.17  Aligned_cols=130  Identities=20%  Similarity=0.269  Sum_probs=110.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE-YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ..+...|..++..|+|++|+..|++++++.+ .+.               .+++++|.|+.++++|++|+.+++++++.+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---------------VTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            5688999999999999999999999999986 322               237789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      |++..+++++|.+|..+|++++|+..|+++++++|++..       +...++.+....++.+++. ..|.+...
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~  145 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE-ENYKHATD  145 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH-HHHHHHHh
Confidence            999999999999999999999999999999999999984       4566666655555554433 35555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=4.1e-13  Score=126.66  Aligned_cols=126  Identities=17%  Similarity=0.141  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----------cCHHHHHHH
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAEKL  470 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~~~  470 (562)
                      +...|..+++.|++++|+..|++++.+.|.+.               .+++++|.++.++           |++++|+..
T Consensus        42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           42 LYWLARTQLKLGLVNPALENGKTLVARTPRYL---------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            34444444444444444444444444444322               2366677777777           777777777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       471 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      ++++++++|++..+++.+|.+|..+|++++|+..|++|++++ ++..+...++.+.....+..+.. ..|++..
T Consensus       107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  178 (217)
T 2pl2_A          107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL-AQYAKAL  178 (217)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            777777777777777777777777777777777777777777 66666666666666666555443 3444443

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.43  E-value=2.3e-13  Score=124.04  Aligned_cols=123  Identities=19%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      +..+|.|+++|++++.+|++|+++   +|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||+.+          
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~----------   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD----------   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC----------
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC----------
Confidence            567899999999999999999987   6999999999999999999999999999999999999999643          


Q ss_pred             CCCCeEEEEEEeeccccceeecCCcceEEEEEecCC--CCCCCCCCCEEEEEEEEEecCCcE
Q 008540          246 PPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD--GFERPNEGAVVKVKLIGKLQDGTV  305 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~--g~~~p~~~~~v~v~~~~~~~~g~~  305 (562)
                         ..+++.|.+..|..... ...+..+...-..|.  +...-..+++|+|+|+..|++.++
T Consensus        73 ---~~lV~~vp~~~f~~~~~-~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L  130 (196)
T 2kfw_A           73 ---ENLVQRVPKDVFMGVDE-LQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNL  130 (196)
T ss_dssp             ---TTTCEEECGGGCCCSSC-CCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCC
T ss_pred             ---hhhEEEEEHHHCCCccC-cccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeE
Confidence               34677777777743111 222333321111110  112334466777777777755444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.42  E-value=5.9e-13  Score=147.39  Aligned_cols=68  Identities=18%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ..+|+|+|.+|.++|++++|+.+|+++|+++|++..+++++|.+|..++++++|++.|++++++.|+.
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            45689999999999999999999999999999999999999999999999999999999999987664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=2.9e-13  Score=118.95  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=91.3

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH----------HHHHHHHHHHHhcCC
Q 008540          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----------KQAEKLCTKVLDLDS  479 (562)
Q Consensus       410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----------~~A~~~~~~al~~~p  479 (562)
                      -+.+.|++|+..|++|+++.|.+...               |+|+|.+++.++++          ++|+..|++||+++|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea---------------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP   77 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence            34567999999999999999986644               88999999999875          599999999999999


Q ss_pred             CCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ++..+||++|.+|..+|           +|++|+++|++|++++|++...+..+..+.
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999985           899999999999999999988877777554

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.41  E-value=5.9e-13  Score=119.00  Aligned_cols=81  Identities=20%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      +..||.|+++|++++.+|++|+++   +|+.|.+|.++++|||+++|.+|++|+++.|.|||+.|||+.+          
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~----------   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD----------   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC----------
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC----------
Confidence            567899999999999999999987   6999999999999999999999999999999999999999543          


Q ss_pred             CCCCeEEEEEEeecccc
Q 008540          246 PPNATLQIALELVSWKT  262 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (562)
                         ..+++.+....|..
T Consensus        73 ---~~~v~~v~~~~f~~   86 (171)
T 2k8i_A           73 ---ENLVQRVPKDVFMG   86 (171)
T ss_dssp             ---TTSEEEEEGGGGTT
T ss_pred             ---hhhEEEeeHHHCCc
Confidence               34678888888753

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.41  E-value=3.9e-14  Score=124.53  Aligned_cols=80  Identities=21%  Similarity=0.393  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~  231 (562)
                      +..||.|++||++++.+|++|+++                 .|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            567899999999999999999986                 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      |+.+.             .+++.+.+..|.
T Consensus        82 G~~~~-------------~~v~~v~~~~f~   98 (151)
T 1ix5_A           82 GNRNE-------------MLIQKIPRDAFK   98 (151)
T ss_dssp             CSCCS-------------TTBCCEETHHHH
T ss_pred             CCCCc-------------cEEEEEEHHHcC
Confidence            96543             467777777774

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=1.5e-12  Score=128.13  Aligned_cols=102  Identities=31%  Similarity=0.446  Sum_probs=95.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+..+|+.+++.|+|++|+..|++|+...|.+.               .+++|+|.+|.++|+|++|+.+|+++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999987643               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      |++.++++++|.+|..+|++++|+..|+++++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999976

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.38  E-value=9.9e-13  Score=134.99  Aligned_cols=130  Identities=16%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHHH------HHHHHHhcHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAKA------LKVACNLNNAACK  458 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------------~~~~~~~~~~------~~~~~~~nla~~~  458 (562)
                      +..+...|..+.+.|++++|+..|++|+.+.|.+...              ..+.....+.      -...+|+++|.++
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            4445555666666666666666666666655543221              0000000000      0112355666666


Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .++|+|++|+.+|+++|+++|+|..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666555555444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.37  E-value=4e-12  Score=119.76  Aligned_cols=107  Identities=20%  Similarity=0.211  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008540          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (562)
Q Consensus       420 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~  499 (562)
                      ..|.+|+..+...        ..+..-...+++++|.++..+|++++|+..++++++++ +++.+++.+|.+|..+|+++
T Consensus        98 g~~~~A~~~~~~a--------l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           98 GYLEQALSVLKDA--------ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             HHHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred             cCHHHHHHHHHHH--------HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence            5666666554421        12222345678999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       500 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      +|+..|+++++++|++..+...+..+.....+.++.
T Consensus       169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            999999999999999999999998887777766554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.37  E-value=5.2e-12  Score=115.06  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=117.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHHH------HHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAKA------LKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~nla~~~~  459 (562)
                      +..+.+.|+.++++|+|++|+..|++|+++.|.+....             ++.......      ....++.++|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            55678899999999999999999999999987653220             000111111      12345678889999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      ..++++.|+..+.+++.++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...++.+...+++.+++. ..
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~  163 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-KY  163 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888776654 45


Q ss_pred             HHhhcc
Q 008540          540 YGNMFA  545 (562)
Q Consensus       540 ~~~~f~  545 (562)
                      |++..+
T Consensus       164 ~~~al~  169 (184)
T 3vtx_A          164 FKKALE  169 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            665544

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.37  E-value=5.8e-13  Score=124.18  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~  231 (562)
                      ...||.|++||++++ +|++|+++                 .|+.|.+|.++++|||+++|.+|++|+++.|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            467899999999999 99999976                 389999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (562)
Q Consensus       232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (562)
                      |+.+.             .+++.+....|.
T Consensus        81 Ge~~~-------------~lv~~vp~~~f~   97 (231)
T 3prb_A           81 GKRDP-------------SKIKLIPLSEFT   97 (231)
T ss_dssp             CCCCG-------------GGEEEEETHHHH
T ss_pred             CCCCh-------------HHEEecCHHHCC
Confidence            96544             467777777764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.36  E-value=1.2e-11  Score=103.79  Aligned_cols=114  Identities=32%  Similarity=0.418  Sum_probs=103.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|+++.|+..|.+++...+...               .+++++|.++.+.+++++|+..+++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999998866432               247899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      |.+..+++.+|.+|..+|++++|+..|++++.++|++..+...+..+..
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888876654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.36  E-value=2.4e-12  Score=132.14  Aligned_cols=132  Identities=11%  Similarity=-0.030  Sum_probs=102.6

Q ss_pred             HhhhHHHHHHHHHcCc-HHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHH------HHHHHHHHhcHHHHH
Q 008540          399 AGKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYDTSF-------------GDEEKKQA------KALKVACNLNNAACK  458 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~-~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~------~~~~~~~~~nla~~~  458 (562)
                      +..+..+|..+...|+ +++|+..|++|+.+.|.+...             ..+.....      ..-...+|+|+|.++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            4456677777777775 777777777777776653211             01111111      111245689999999


Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLA-----EFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A-----~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .++|+|++|+.+|+++|+++|++..+|+++|.+|.. .+.+++|     +++|++|+.++|++..++..++.+.....
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999 5554888     59999999999999999999999987754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.35  E-value=8.8e-13  Score=111.15  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             HcCcHHHHHHHHHHHHHH---hhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 008540          411 KAGKYARASKRYEKAVKY---IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (562)
Q Consensus       411 ~~g~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~  487 (562)
                      ..|+|++|+..|++|+++   .|.               ...+++++|.+|.++|+|++|+..++++++++|++..++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   66 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF   66 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            368899999999999987   343               33458999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       488 ~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                      +|.+|..+|++++|+..|++++.++|+++.+....
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999999999999999998765433

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.35  E-value=1.2e-12  Score=115.52  Aligned_cols=79  Identities=15%  Similarity=0.283  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPN  248 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~  248 (562)
                      +..||.|+++|+++ .+|++|+++. +.|.+|.++++|||+++|.+|++|+++.|.|||+.|||+.             +
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------------~   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------------D   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------------C
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------------C
Confidence            46789999999999 8999999888 9999999999999999999999999999999999999954             4


Q ss_pred             CeEEEEEEeecccc
Q 008540          249 ATLQIALELVSWKT  262 (562)
Q Consensus       249 ~~l~~~v~l~~~~~  262 (562)
                      ..+++.|.+..|..
T Consensus        68 ~~lv~~v~~~~f~~   81 (158)
T 3cgm_A           68 PEGVQVVPLSAFPE   81 (158)
T ss_dssp             GGGEEEEEGGGSCT
T ss_pred             cceEEEEEHHHCCC
Confidence            56889999988853

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.34  E-value=1.7e-12  Score=137.57  Aligned_cols=120  Identities=26%  Similarity=0.408  Sum_probs=109.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      .+.+..+...|+.++++|+|++|+..|++|+++.|...               .+++|+|.+|.++++|++|+.++++++
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            35677889999999999999999999999999977643               348999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +++|++..+++++|.+|..+|++++|++.|++|++++|++..+...++.+....+
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  122 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  122 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888888744443

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.32  E-value=1.8e-12  Score=134.09  Aligned_cols=100  Identities=25%  Similarity=0.446  Sum_probs=89.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      ..++.||.|+|||+++. ||+.|+++.  +.|+.|.+|.|+++|||+++|.||++|++++|.+|++.+||..+.     +
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a  227 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K  227 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence            56899999999999995 999999987  489999999999999999999999999999999999999998764     5


Q ss_pred             CCcEEEEEEEeEeeeccccccCcceeEe
Q 008540          131 NATLQFDVELLSWTSVKDICKDGGIIKK  158 (562)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~  158 (562)
                      +.+++|+|+|+++........|..+++.
T Consensus       228 g~~~~F~V~v~~v~~~~lpeldDEfak~  255 (432)
T 1w26_A          228 GKAAKFAINLKKVEERELPELTAEFIKR  255 (432)
T ss_dssp             SCEEEEEEECCEECCEECCCCSHHHHTT
T ss_pred             CceEEEEEEEEEEeccCCCCcchHHHHH
Confidence            6899999999999876666666666653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.30  E-value=1.6e-11  Score=114.88  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=91.1

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (562)
                      ..|..+++.|+|++|+..|++++++.|.+..               +++++|.++..+|++++|+.+|+++++++|++..
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVD---------------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            4999999999999999999999999887543               3889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          484 ALYRRAQAYIQ-----------------------------------MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       484 a~~~~a~a~~~-----------------------------------l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      +++++|.+|+.                                   +++|++|+.+|++|++++|++ ++...+.++.
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            88888777643                                   346889999999999999975 3445555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.30  E-value=1.3e-12  Score=115.68  Aligned_cols=97  Identities=12%  Similarity=0.006  Sum_probs=88.4

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .+++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++|++++|+++.++..++.+...
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 008540          529 MKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f~~  546 (562)
                      +.+..++. ..|.+....
T Consensus       117 lg~~~eA~-~~~~~al~l  133 (151)
T 3gyz_A          117 LKAPLKAK-ECFELVIQH  133 (151)
T ss_dssp             TTCHHHHH-HHHHHHHHH
T ss_pred             cCCHHHHH-HHHHHHHHh
Confidence            88877655 356655543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.30  E-value=3.2e-11  Score=109.78  Aligned_cols=118  Identities=15%  Similarity=0.058  Sum_probs=92.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------C-hHHHHHH------HHHHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------G-DEEKKQA------KALKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~~~~~~~------~~~~~~~~~nla~~~~  459 (562)
                      +..+...|..+++.|+++.|+..+.+++...+.....            . .......      ......++.++|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4456777788888888888888888877765543211            0 0000000      1112446789999999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ++|+|++|+..++++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            999999999999999999999999999999999999999999999999999999874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.30  E-value=7.1e-12  Score=103.28  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|+|++|+..|++++...+...               .+++++|.++..+++|++|+..++++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------------KYWLMKGKALYNLERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34577899999999999999999999999876533               237899999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008540          479 SR--NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       479 p~--~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~p~~  515 (562)
                      |.  +..+++.+|.+|..+ |++++|+++|++++...|.+
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99  999999999999999 99999999999999999976

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.29  E-value=2.4e-11  Score=110.04  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=100.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHH-HhhccCH--HHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-KLKLKDY--KQAEKLCTKVL  475 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~k~~~~--~~A~~~~~~al  475 (562)
                      +..+...|..++..|+|+.|+..|.+++.+.|.+.               .+++++|.+ +...+++  ++|+..+++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45678899999999999999999999999987643               237899999 8899999  99999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      +.+|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+.
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999876555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.28  E-value=2.9e-11  Score=114.24  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+...|..++..|+|++|+..|++|++..|..               ..+++++|.+|.++|++++|+..++++++++|+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            45568999999999999999999999887753               334889999999999999999999999999999


Q ss_pred             CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 008540          481 NV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       481 ~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~  532 (562)
                      +.       .+|+++|.++..+|++++|+..|++|++++|+  +..+...++.+.......
T Consensus       109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            98       77999999999999999999999999999999  888888888887655544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.28  E-value=2e-11  Score=113.77  Aligned_cols=129  Identities=22%  Similarity=0.191  Sum_probs=110.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|+.++..|+|++|+..|++++.   .               ...+++++|.+|.++|+|++|+.++++++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---P---------------HSRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455678999999999999999999999851   1               1235899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKEAKFYG  541 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~l~~~~~~~~~~~~~~~~  541 (562)
                      +|++..+++++|.+|..+|++++|+..|++++++.|++.                .+...++.+...+.+..++. ..|.
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~  145 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLA  145 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHH
Confidence            999999999999999999999999999999999998877                88888888887777665543 3455


Q ss_pred             hhcc
Q 008540          542 NMFA  545 (562)
Q Consensus       542 ~~f~  545 (562)
                      +...
T Consensus       146 ~al~  149 (213)
T 1hh8_A          146 LATS  149 (213)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.27  E-value=4.3e-11  Score=102.37  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=88.5

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ....+.|+|.+|+++|+|++|+..|+++|+++|.++.+|+++|.||..+|++++|+.+|++|++++|++..+...++.+.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            34458899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 008540          527 EKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       527 ~~~~~~~~~~~~~~~~~f~  545 (562)
                      ..+++..++. ..|++...
T Consensus        92 ~~~~~~~~A~-~~~~~al~  109 (126)
T 4gco_A           92 VAMREWSKAQ-RAYEDALQ  109 (126)
T ss_dssp             HHTTCHHHHH-HHHHHHHH
T ss_pred             HHCCCHHHHH-HHHHHHHH
Confidence            8888877654 46665554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.24  E-value=7.6e-11  Score=118.31  Aligned_cols=123  Identities=24%  Similarity=0.350  Sum_probs=109.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ......|..+++.|++++|+..|++++...|.+.           .....++.++|.++.++|++++|+..++++++.+|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3455679999999999999999999999877532           23445578899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      +++.+++++|.+|..+|++++|+..|+++++++|++..++..+..+...+++.+
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998887776543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.24  E-value=9.9e-11  Score=99.31  Aligned_cols=129  Identities=27%  Similarity=0.381  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+...|..++..|++++|+..|++++...+...               .+++++|.++...+++++|+..+++++...|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch---------------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            466789999999999999999999998765432               23778999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +..+++.+|.++..+|++++|+..|++++.+.|.+..+...+..+....++..+.. ..+..+..
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~  131 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALE  131 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHc
Confidence            99999999999999999999999999999999999888888888776666555443 35555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.22  E-value=5.2e-11  Score=113.77  Aligned_cols=112  Identities=25%  Similarity=0.320  Sum_probs=82.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|+|++|+..|++++...|.+.               .+++++|.++.++|++++|+..++++++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            44566777777777777777777777777665432               236677777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTL  525 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~------p~~~~~~~~l~~l  525 (562)
                      |++..+++.+|.+|..+|++++|+..|+++++++      |++..+...+..+
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            7777777777777777777777777777777777      7776666666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.21  E-value=1.9e-10  Score=111.19  Aligned_cols=114  Identities=19%  Similarity=0.055  Sum_probs=102.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|++++|+..|++++...|...               .+++++|.++..+|+|++|+..++++++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4567788999999999999999999999999877533               3488999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ++|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999998655555444

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.21  E-value=4.9e-12  Score=129.06  Aligned_cols=101  Identities=20%  Similarity=0.428  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      ..++.||.|+|||+++. ||+.|+++.  +.|+.|.+|.|++||||+++|.||++|++++|.|+++..||..+.     +
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----a  230 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K  230 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----C
Confidence            46889999999999995 999999884  479999999999999999999999999999999998788987664     6


Q ss_pred             CCcEEEEEEEeEeeeccccccCcceeEee
Q 008540          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (562)
Q Consensus       131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (562)
                      |.++.|+|+|+++........|..+++.+
T Consensus       231 Gk~~~F~V~v~~i~~~~lpeldDEfak~~  259 (392)
T 1t11_A          231 GKAAKFAIKVNKVEARELPELNDEFVARF  259 (392)
T ss_dssp             SCEEEECCCEEEEEEEECCCCSTGGGGGG
T ss_pred             CCeEEEEEEEEEEEcCCCCCcCHHHHHHh
Confidence            79999999999999877777777777643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.21  E-value=5.8e-11  Score=128.67  Aligned_cols=131  Identities=7%  Similarity=0.013  Sum_probs=115.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|+|++|+..|++|+++.|.+.               .+++++|.+|..+|++++|+.+++++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---------------EAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999877543               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM---KEYNKKEAKFYGNMFA  545 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~f~  545 (562)
                      |++..+++++|.+|..+|++++|++.|+++++++|++..+...+..+...+   .+..++. ..|++...
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~al~  156 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAAVA  156 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHHHh
Confidence            999999999999999999999999999999999999999999999888777   5554433 35555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.21  E-value=2.7e-10  Score=110.07  Aligned_cols=136  Identities=15%  Similarity=0.233  Sum_probs=109.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh--------ccCHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--------LKDYKQAEKL  470 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--------~~~~~~A~~~  470 (562)
                      ...+...|..+++.|+|++|+..|+++++..|.+..            ...+++++|.|+++        ++++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            456778888899999999999999999988775542            23458899999999        9999999999


Q ss_pred             HHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-
Q 008540          471 CTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKM-  529 (562)
Q Consensus       471 ~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~-  529 (562)
                      ++++++.+|++..+.                 +.+|.+|..+|++++|+..|+++++.+|++   ..+...++.+...+ 
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            999999999986666                 999999999999999999999999999984   45777777776655 


Q ss_pred             ---------HHHHHHHHHHHHhhcccc
Q 008540          530 ---------KEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       530 ---------~~~~~~~~~~~~~~f~~~  547 (562)
                               .+.+ +....|+++....
T Consensus       200 ~~~~~~~~~~~~~-~A~~~~~~~~~~~  225 (261)
T 3qky_A          200 EQSVRARQPERYR-RAVELYERLLQIF  225 (261)
T ss_dssp             HTSCGGGHHHHHH-HHHHHHHHHHHHC
T ss_pred             ccchhhcccchHH-HHHHHHHHHHHHC
Confidence                     3333 3344666665544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.20  E-value=5.2e-11  Score=115.11  Aligned_cols=135  Identities=19%  Similarity=0.249  Sum_probs=109.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|+|++|+..|++++...|.+..            ...+++++|.||+++|+|++|+..++++++..
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            567889999999999999999999999998876531            24458899999999999999999999999998


Q ss_pred             CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHH
Q 008540          479 SRN---VKALYRRAQAYIQ--------MADLDLAEFDIKKALEIDPDNRDVK-----------------LEYKTLKEKMK  530 (562)
Q Consensus       479 p~~---~ka~~~~a~a~~~--------l~~~~~A~~~~~~al~l~p~~~~~~-----------------~~l~~l~~~~~  530 (562)
                      |++   ..+++++|.+|..        +|++++|+..|+++++++|++..+.                 ..++.+....+
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  162 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE  162 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            854   6799999999999        9999999999999999999986555                 34455555555


Q ss_pred             HHHHHHHHHHHhhccc
Q 008540          531 EYNKKEAKFYGNMFAK  546 (562)
Q Consensus       531 ~~~~~~~~~~~~~f~~  546 (562)
                      +..++. ..|.+....
T Consensus       163 ~~~~A~-~~~~~~l~~  177 (261)
T 3qky_A          163 LYEAAA-VTYEAVFDA  177 (261)
T ss_dssp             CHHHHH-HHHHHHHHH
T ss_pred             CHHHHH-HHHHHHHHH
Confidence            444433 355555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.20  E-value=7e-11  Score=125.11  Aligned_cols=122  Identities=16%  Similarity=0.024  Sum_probs=111.2

Q ss_pred             hhhHHHHHHHHHc---------CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--------c
Q 008540          400 GKKKEQGNTLFKA---------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------K  462 (562)
Q Consensus       400 ~~~~~~G~~~~~~---------g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~  462 (562)
                      ..+...|..++..         |+|++|+..|++|+++.|.+..               +++++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---------------SWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHHHhhccccc
Confidence            5677889999999         9999999999999999876543               388999999999        9


Q ss_pred             CHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      +|++|+..|+++++++|   +++.+|+++|.+|..+|++++|++.|++|++++|++..++..+..+...+.+..+.-
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999999999999999999998888887766544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.20  E-value=2.2e-10  Score=103.22  Aligned_cols=132  Identities=17%  Similarity=0.152  Sum_probs=112.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ...+...|..++..|++++|+..|++++...+...               .++.++|.++...+++++|+..+++++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV---------------KVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            34567888999999999999999999998866432               347899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....++..++. ..|.+....
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~  173 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANEL  173 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHc
Confidence            9999999999999999999999999999999999999999999988887777665443 455555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.19  E-value=2.1e-11  Score=107.52  Aligned_cols=110  Identities=11%  Similarity=-0.021  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008540          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (562)
Q Consensus       420 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~  499 (562)
                      ..|++++.+.|.+               ..+++++|.++++.|+|++|+..+++++..+|+++.+|+.+|.+|..+|+++
T Consensus         8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence            3466777665543               3348899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       500 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +|+..|++|+.++|++..+...++.+...+.+..++. ..|.+...
T Consensus        73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~  117 (148)
T 2vgx_A           73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQE  117 (148)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            9999999999999999999999998887777766554 34444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.18  E-value=2.7e-10  Score=107.66  Aligned_cols=110  Identities=13%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+..+|..+++.|+|++|+..|++++...|....            ...+++++|.||+++|+|++|+..++++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            345778899999999999999999999998876442            23458899999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540          479 SRNVK---ALYRRAQAYIQ------------------MADLDLAEFDIKKALEIDPDNRDVKL  520 (562)
Q Consensus       479 p~~~k---a~~~~a~a~~~------------------l~~~~~A~~~~~~al~l~p~~~~~~~  520 (562)
                      |++..   ++|++|.+|..                  +|++++|+..|+++++.+|++..+..
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            99875   89999999987                  57899999999999999999975543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.18  E-value=8.7e-11  Score=109.40  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=94.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|+|++|+..|++|+.+.|...               .+++++|.+|.++|+|++|+.++++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            35688999999999999999999999999876543               348899999999999999999999999988


Q ss_pred             CCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          479 SRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       479 p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      |.+.                .+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            8776                9999999999999999999999999999999873

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.18  E-value=1.6e-10  Score=111.76  Aligned_cols=73  Identities=12%  Similarity=0.048  Sum_probs=45.8

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      +.++|.++.++|++++|+.+++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|.+..+...++
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            5566666666666666666666666666666666666666666666666666666666666666655555555

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.18  E-value=1.3e-11  Score=136.59  Aligned_cols=126  Identities=14%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHHH------HHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAKA------LKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~nla~~~~  459 (562)
                      +..+..+|..+++.|+|++|+..|++|++..|.+....             ++-....+.      -...+++|+|.++.
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            44566666666666777777777776666665433210             000000000      00122555566666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ++|+|++ +.+|+++++++|++..+|+++|.+|..+|++++|+++|++|++++|++..++..++.+
T Consensus       513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            6666666 6666666666666666666666666666666666666666666666655555555444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.1e-10  Score=109.43  Aligned_cols=146  Identities=18%  Similarity=0.181  Sum_probs=117.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-----h------HHHHHHHHHHHHHHhcHHHHHhhccCHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-----D------EEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~------~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (562)
                      +..+...|..+++.|++++|+..|++++.+.+......     .      +...........++.++|.++..+|+|++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            67788999999999999999999999999754311000     0      000001123456788999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +..+++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...++.+...+++..++. ..|++...
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~  235 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888777665543 35555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.17  E-value=1.2e-10  Score=123.24  Aligned_cols=130  Identities=15%  Similarity=-0.008  Sum_probs=115.1

Q ss_pred             HhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      +..+..+|..++..|+| ++|+..|++|+++.|...               .+++++|.+|.++|+|++|+.+|++++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV---------------EAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56788999999999999 999999999999987643               34889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQM---------ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM--------KEYNKKEAKFY  540 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l---------~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~--------~~~~~~~~~~~  540 (562)
                      +|+ ..+++++|.+|..+         |++++|+..|++|++++|++..++..++.+...+        .+..++. ..|
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~-~~~  244 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL-SAY  244 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH-HHH
Confidence            999 79999999999999         9999999999999999999999999999998777        6665543 355


Q ss_pred             Hhhcc
Q 008540          541 GNMFA  545 (562)
Q Consensus       541 ~~~f~  545 (562)
                      .+...
T Consensus       245 ~~al~  249 (474)
T 4abn_A          245 AQAEK  249 (474)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.16  E-value=1.3e-10  Score=117.84  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|++++|+..|++++...|.+.               .+++++|.+|.++|++++|+..++++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34567788889999999999999999998876543               247889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |++..+++++|.+|..+|++++|+..|+++++++|++            ..++..++.+...+.+.+..++ ...+-...
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~l~~  356 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA-ANLGDLDV  356 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH-HHTTCCGG
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH-HHHhhHHH
Confidence            9999999999999999999999999999999998873            4566777777666665544332 33333344


Q ss_pred             cCC
Q 008540          547 MTE  549 (562)
Q Consensus       547 ~~~  549 (562)
                      +.+
T Consensus       357 ~~~  359 (365)
T 4eqf_A          357 LLR  359 (365)
T ss_dssp             GTT
T ss_pred             HHH
Confidence            433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.16  E-value=4.7e-11  Score=132.25  Aligned_cols=94  Identities=13%  Similarity=0.016  Sum_probs=82.4

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ..+++++|.+++++|+|++|+.+|+++++++|++..+++++|.+|..+|++++ +++|++|++++|++..++..++.+..
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999 99999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhh
Q 008540          528 KMKEYNKKEAKFYGNM  543 (562)
Q Consensus       528 ~~~~~~~~~~~~~~~~  543 (562)
                      .+.+.+++. ..|.+.
T Consensus       546 ~~g~~~~A~-~~~~~a  560 (681)
T 2pzi_A          546 AEGDRVGAV-RTLDEV  560 (681)
T ss_dssp             HTTCHHHHH-HHHHTS
T ss_pred             HcCCHHHHH-HHHHhh
Confidence            777766543 344443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.16  E-value=9e-12  Score=102.98  Aligned_cols=94  Identities=29%  Similarity=0.418  Sum_probs=68.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|+|++|+..|++|+.+.|.+.               .+++|+|.|+.++|+|++|+.+|+++++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45567777777777777777777777777766432               236777777777777777777777777777


Q ss_pred             CCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540          479 SRN------VKALYRRAQAYIQMADLDLAEFDIKK  507 (562)
Q Consensus       479 p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~  507 (562)
                      |++      ..+++++|.++..+|+++.|+..+++
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            777      77777777777777777766655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.15  E-value=2e-11  Score=110.48  Aligned_cols=131  Identities=11%  Similarity=0.092  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      ++...++.++..|+|+.|+..|++++...|.+..               +++++|.+|..+++|++|+..++++++++|+
T Consensus        12 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   76 (177)
T 2e2e_A           12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSE---------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGE   76 (177)
T ss_dssp             CSSTTTCCCC-----CCCCHHHHHHHHHCCSCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred             HHhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            3445556678899999999999999998775432               3889999999999999999999999999999


Q ss_pred             CHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          481 NVKALYRRAQA-YIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       481 ~~ka~~~~a~a-~~~l~~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      +..+++.+|.+ |...|++  ++|+..|+++++++|++..+...++.+....++..++. ..|.+.+...
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~  145 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLN  145 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhC
Confidence            99999999999 8899999  99999999999999999999999999888877776554 4666665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.14  E-value=1.9e-10  Score=103.64  Aligned_cols=132  Identities=20%  Similarity=0.235  Sum_probs=114.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|++++|+..|++++...+..               ..++.++|.++..++++++|+..++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            45678889999999999999999999998876543               234789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +|.+..+++.+|.+|..+|++++|+..|++++.++|.+..+...++.+....++..+.. ..+.+...
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~  138 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI-DSFKIALG  138 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH-HHHHHHHh
Confidence            99999999999999999999999999999999999999998888888877766665443 35555444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.14  E-value=4.5e-10  Score=106.35  Aligned_cols=133  Identities=17%  Similarity=0.072  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH------HHHHHHhcHHHHHhh
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKLK  460 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~~~k  460 (562)
                      ..+...|..++..|++++|+..|++++...+.....             ..+-....+.      ....++.++|.++.+
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            345556666666666666666666666665432111             0000000000      001224455555555


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  532 (562)
                      +|++++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  209 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR  209 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH
Confidence            555555555555555555555555555555555555555555555555555555555555555554444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.13  E-value=2.5e-10  Score=95.37  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008540          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA  496 (562)
Q Consensus       417 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~  496 (562)
                      .|+..|++++...|.+.               .+++++|.+|..+|+|++|+..|++++.++|++..+++.+|.+|..+|
T Consensus         3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999998877543               248899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Q 008540          497 DLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       497 ~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~  531 (562)
                      ++++|+..|+++++++|.  +......+..+...+..
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            999999999999999885  44455555544444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.13  E-value=2e-10  Score=116.24  Aligned_cols=123  Identities=12%  Similarity=0.098  Sum_probs=103.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|++++|+..|++++.+.|...               .+++++|.++.++|++++|+..++++++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34567788889999999999999999998866532               347889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----------RDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      |++..+++++|.+|..+|++++|+..|++++.++|++           ..++..+..+...+.+.+...
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999999999999999999999999999999998888           778888888877776655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.13  E-value=3.5e-10  Score=107.07  Aligned_cols=79  Identities=19%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      .++.++|.++.++|++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus       160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999999999999999999999988888776644

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=4.6e-10  Score=110.70  Aligned_cols=130  Identities=14%  Similarity=0.016  Sum_probs=105.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-cCHHHHHHHHHHHH
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL  475 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~al  475 (562)
                      ..+..+.+.|+.+.+.|+|++|+.+|++|+.+.+.....         .....++.|+|.+|..+ |++++|+.+|++++
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            346778899999999999999999999999988754321         22345688999999996 99999999999999


Q ss_pred             hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHHHHHH
Q 008540          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~~~~~~~~~~  535 (562)
                      ++.|.+      ..++.++|.+|..+|+|++|+..|++++++.|++..       +...+..+...+.+..++
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence            998754      568999999999999999999999999999998753       334555555555544433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.13  E-value=6.2e-10  Score=115.98  Aligned_cols=121  Identities=25%  Similarity=0.355  Sum_probs=107.2

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ......|..+++.|++++|+..|++++...|.+.           .....++.++|.++.++|++++|+..|++++.++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            3345669999999999999999999999876532           22345688999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      ++..+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+....+.
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999887666544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.12  E-value=5.1e-10  Score=110.43  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHH----HhhccCHHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC----KLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~k~~~~~~A~~~~~~a  474 (562)
                      ...+...|..+.+.|++++|+..|+++++..|...                 ..+++.+    +...+++++|+..++++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34566788888899999999999999988765421                 1122211    11235555555555555


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      ++.+|+++.+++.+|.+|..+|++++|+..|++|++++|+++++...+..+...+.+
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            555555555555555555555555555555555555555555555555544444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=2.1e-10  Score=103.96  Aligned_cols=81  Identities=15%  Similarity=0.074  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYNKKEAKFYG  541 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~~~~~~~~~~~  541 (562)
                      ...|+..++++++.+|+++.+++.+|.+|..+|++++|+..|+++++++|+.  ..++..+..+...+.+..+.. ..|+
T Consensus        90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~  168 (176)
T 2r5s_A           90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA-SKYR  168 (176)
T ss_dssp             SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHH
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH-HHHH
Confidence            3346777788888889999999999999999999999999999999999875  458888887777666554433 3555


Q ss_pred             hhcc
Q 008540          542 NMFA  545 (562)
Q Consensus       542 ~~f~  545 (562)
                      +.+.
T Consensus       169 ~al~  172 (176)
T 2r5s_A          169 RQLY  172 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.12  E-value=4.6e-10  Score=112.53  Aligned_cols=111  Identities=26%  Similarity=0.282  Sum_probs=101.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|+.++..|+|++|+..|++++...|.+.               .+++++|.++..+|++++|+..++++++.+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999877543               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP---DNRDVKLEYKT  524 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p---~~~~~~~~l~~  524 (562)
                      |++..+++.+|.+|..+|++++|+..|+++++++|   ++..+...+..
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            99999999999999999999999999999999999   88877777743

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=2.8e-10  Score=112.03  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=99.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHH-----------
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA-----------  467 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A-----------  467 (562)
                      ...+...|..+++.|++++|+..|++++...|.+...               ++++|.+++.+|++++|           
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI---------------GLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH---------------HHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH---------------HHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            3567889999999999999999999999998875432               55666666666666655           


Q ss_pred             -----------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 008540          468 -----------------------EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEY  522 (562)
Q Consensus       468 -----------------------~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l  522 (562)
                                             +..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++  ..++..+
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                   455566677789999999999999999999999999999999999998  7788888


Q ss_pred             HHHHHHHHHHHHH
Q 008540          523 KTLKEKMKEYNKK  535 (562)
Q Consensus       523 ~~l~~~~~~~~~~  535 (562)
                      ..+...+.+....
T Consensus       262 ~~~~~~~g~~~~a  274 (287)
T 3qou_A          262 QEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHHHCTTCHH
T ss_pred             HHHHHHcCCCCcH
Confidence            8887777654443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=1e-09  Score=92.87  Aligned_cols=94  Identities=14%  Similarity=0.089  Sum_probs=85.8

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ++++|.++++.|++++|+..++++++.+|++..+|+.+|.+|..+|++++|+..|++|++++|++..++..++.+.....
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHhhcc
Q 008540          531 EYNKKEAKFYGNMFA  545 (562)
Q Consensus       531 ~~~~~~~~~~~~~f~  545 (562)
                      +..++. ..|.+...
T Consensus       100 ~~~~A~-~~~~~al~  113 (121)
T 1hxi_A          100 NANAAL-ASLRAWLL  113 (121)
T ss_dssp             HHHHHH-HHHHHHHC
T ss_pred             CHHHHH-HHHHHHHH
Confidence            877655 35555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.10  E-value=3.5e-10  Score=96.72  Aligned_cols=96  Identities=16%  Similarity=0.223  Sum_probs=78.2

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKL  520 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~-------~~~  520 (562)
                      ..++.|+|.+++++|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+++|++|++++|++..       +..
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            4457899999999999999999999999999999999999999999999999999999999999987643       444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          521 EYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       521 ~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      .++.+...+....++. ..|.+..
T Consensus        88 ~lg~~~~~~~~~~~A~-~~~~kal  110 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAV-QWFHRSL  110 (127)
T ss_dssp             HHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHH-HHHHHHH
Confidence            4555555555554433 3454443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.10  E-value=3.7e-10  Score=111.35  Aligned_cols=112  Identities=24%  Similarity=0.263  Sum_probs=91.7

Q ss_pred             HHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      .+..+...|..+... |++++|+.+|++|+++.+.....         .....+++++|.++.++|+|++|+.+|+++++
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356788999999996 99999999999999998854321         12345688999999999999999999999999


Q ss_pred             cCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          477 LDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       477 ~~p~~~k-------a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      +.|++..       +++++|.||..+|++++|+..|+++++++|++...
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9987643       68999999999999999999999999999987643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.10  E-value=7e-10  Score=105.91  Aligned_cols=85  Identities=15%  Similarity=0.031  Sum_probs=53.8

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .+++++|.++.++|++++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++|.+..+...+..+...
T Consensus       142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (252)
T 2ho1_A          142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV  221 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666555555555


Q ss_pred             HHHHH
Q 008540          529 MKEYN  533 (562)
Q Consensus       529 ~~~~~  533 (562)
                      ..+..
T Consensus       222 ~g~~~  226 (252)
T 2ho1_A          222 FEDRD  226 (252)
T ss_dssp             TTCHH
T ss_pred             ccCHH
Confidence            44443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.10  E-value=8e-10  Score=93.81  Aligned_cols=96  Identities=19%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ...+.++|.++++.|+|++|+..++++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..+...++.+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 008540          528 KMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       528 ~~~~~~~~~~~~~~~~f  544 (562)
                      .+++..++. ..|.+..
T Consensus        84 ~~~~~~~A~-~~~~~al   99 (126)
T 3upv_A           84 AVKEYASAL-ETLDAAR   99 (126)
T ss_dssp             HTTCHHHHH-HHHHHHH
T ss_pred             HHhCHHHHH-HHHHHHH
Confidence            877766544 3444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.10  E-value=2.3e-10  Score=116.02  Aligned_cols=129  Identities=9%  Similarity=0.014  Sum_probs=107.1

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (562)
                      ..|..+...|++++|+..|++++...|....             ..+++++|.+|.++|++++|+..++++++.+|++..
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  248 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS  248 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3488999999999999999999999776221             224889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      +++.+|.+|..+|++++|+..|+++++++|++..+...++.+...+.+..++. ..|++....
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~  310 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV-SNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh
Confidence            99999999999999999999999999999999999999999988877765543 456655543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.10  E-value=1e-09  Score=102.29  Aligned_cols=82  Identities=20%  Similarity=0.149  Sum_probs=50.9

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP-DNRDVKLEYKTLKE  527 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p-~~~~~~~~l~~l~~  527 (562)
                      .+++++|.++.++|++++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++| .+..+...+..+..
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK  193 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666 66555554444444


Q ss_pred             HHH
Q 008540          528 KMK  530 (562)
Q Consensus       528 ~~~  530 (562)
                      ..+
T Consensus       194 ~~~  196 (225)
T 2vq2_A          194 ALG  196 (225)
T ss_dssp             HTT
T ss_pred             hcC
Confidence            333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.09  E-value=4.4e-10  Score=118.99  Aligned_cols=106  Identities=30%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      +.+.+..+..+|+.+++.|+|.+|+..|++++...|+                ..+++++|.|+.++|+|++|+..|+++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            5677899999999999999999999999999998752                234889999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ++.+|++..+++.+|.+|..+|++++|+..|++++.++|.+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999999999999764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.09  E-value=8.4e-10  Score=102.86  Aligned_cols=96  Identities=14%  Similarity=0.061  Sum_probs=76.9

Q ss_pred             HHHhcHHHHHhhc-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKL-KDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       449 ~~~~nla~~~~k~-~~~~~A~~~~~~al~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      .++.++|.++..+ +++++|+..++++++  .+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3477888888888 999999999999888  6667788888999999999999999999999999998888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 008540          526 KEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~f~  545 (562)
                      .....+..++. ..+.+...
T Consensus       157 ~~~~~~~~~A~-~~~~~~~~  175 (225)
T 2vq2_A          157 KMLAGQLGDAD-YYFKKYQS  175 (225)
T ss_dssp             HHHHTCHHHHH-HHHHHHHH
T ss_pred             HHHcCCHHHHH-HHHHHHHH
Confidence            77776665543 35555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.09  E-value=2.5e-10  Score=113.06  Aligned_cols=133  Identities=19%  Similarity=0.195  Sum_probs=114.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|++++|+..|++++...|...               .++.++|.++..+|++++|+..++++++.+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA---------------QLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            35577889999999999999999999999876543               248899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------------NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |++..+++.+|.+|..+|++++|+..|++++.++|+            +..+...+..+...+.+.+++. ..+++....
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~  315 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE-LTYAQNVEP  315 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH-HHTTCCSHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999999            7888888888888777765543 355444444


Q ss_pred             c
Q 008540          547 M  547 (562)
Q Consensus       547 ~  547 (562)
                      +
T Consensus       316 ~  316 (327)
T 3cv0_A          316 F  316 (327)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.09  E-value=1.3e-10  Score=101.32  Aligned_cols=96  Identities=8%  Similarity=0.022  Sum_probs=85.6

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      ..++++|.++++.|+|++|+..+++++..+|++..+|+.+|.+|..+|++++|+.+|++|+.++|++..+...++.+...
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 008540          529 MKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f~  545 (562)
                      +.+..++. ..|.+...
T Consensus        99 ~g~~~~A~-~~~~~al~  114 (142)
T 2xcb_A           99 LGDLDGAE-SGFYSARA  114 (142)
T ss_dssp             TTCHHHHH-HHHHHHHH
T ss_pred             cCCHHHHH-HHHHHHHH
Confidence            87776554 35554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.07  E-value=6.4e-10  Score=113.82  Aligned_cols=146  Identities=16%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH------HHHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~nla~~~~  459 (562)
                      +..+...|..+.+.|++++|+..|++++.+.|.....             .++-.....      .....+++++|.++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            4455666667777777777777777776665542110             000000000      011345667777777


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      ++|++++|+..++++++.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.....+..++. ..
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~  327 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RL  327 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HH
Confidence            77777777777777777777777777777777777777777777777777777777777777776665555554432 34


Q ss_pred             HHhhcc
Q 008540          540 YGNMFA  545 (562)
Q Consensus       540 ~~~~f~  545 (562)
                      |.++..
T Consensus       328 ~~~al~  333 (388)
T 1w3b_A          328 YRKALE  333 (388)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            544443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=1.4e-09  Score=102.67  Aligned_cols=132  Identities=11%  Similarity=0.036  Sum_probs=107.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh------------------c
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK------------------L  461 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k------------------~  461 (562)
                      ..+...|..+++.|+|++|+..|+++++..|.+...            ..+++++|.++.+                  +
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  109 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDP  109 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------CC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence            457789999999999999999999999998876532            1235666766665                  6


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008540          462 KDYKQAEKLCTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE  521 (562)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~  521 (562)
                      +++++|+..++++++.+|++..+.                 +.+|.+|..+|++++|+..|+++++..|+++   ++...
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  189 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL  189 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence            899999999999999999987654                 6789999999999999999999999999986   56777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 008540          522 YKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      ++.+..++++..+.. ..++.+.
T Consensus       190 l~~~~~~~g~~~~A~-~~~~~l~  211 (225)
T 2yhc_A          190 MENAYRQMQMNAQAE-KVAKIIA  211 (225)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHcCCcHHHH-HHHHHHH
Confidence            777777777766553 3455443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.07  E-value=1.2e-09  Score=105.54  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=102.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++..|++++|+..|+++++..|....               ++.++|.+|.++|+|++|+..++++++.+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            344678999999999999999999999998876543               38899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      |.+..+++.+|...+..+++++|+..|+++++++|++..+...++.+...+..
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999999999444445599999999999999999998888888777666543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.07  E-value=4.7e-10  Score=119.71  Aligned_cols=116  Identities=25%  Similarity=0.358  Sum_probs=99.8

Q ss_pred             cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (562)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (562)
                      ...++.+++...+..+..+|+.+++.|+|++|+..|++++...|.+.               .+++++|.||.++|+|++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---------------VFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHH
Confidence            44578888999999999999999999999999999999999987643               348999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      |+..|+++++++|++..+++.+|.+|..+|++++|+..|+ ++.++|+....
T Consensus        78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~  128 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA  128 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence            9999999999999999999999999999999999999996 88999887543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.06  E-value=1.6e-09  Score=112.93  Aligned_cols=114  Identities=25%  Similarity=0.258  Sum_probs=102.9

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..+++.|+|.+|+..|++++...|.+.               .+++++|.++.++|++++|+..++++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4577889999999999999999999999999876543               3488999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTL  525 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~l~~l  525 (562)
                      .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+..+
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988   666655433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.06  E-value=7.3e-10  Score=105.79  Aligned_cols=96  Identities=19%  Similarity=0.191  Sum_probs=78.2

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      .+++++|.++..+|++++|+..+++++.  .+|.+..+++.+|.+|..+|++++|+..|+++++++|.+..+...+..+.
T Consensus       106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            4577888999999999999999999988  77888889999999999999999999999999999998888888888877


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 008540          527 EKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       527 ~~~~~~~~~~~~~~~~~f~  545 (562)
                      ...++..++. ..+.++..
T Consensus       186 ~~~g~~~~A~-~~~~~~~~  203 (252)
T 2ho1_A          186 YKEREYVPAR-QYYDLFAQ  203 (252)
T ss_dssp             HHTTCHHHHH-HHHHHHHT
T ss_pred             HHcCCHHHHH-HHHHHHHH
Confidence            7776665543 35555544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.4e-09  Score=89.47  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=65.0

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ..++++|.+++++|+|++|+..++++++++|++..+++++|.+|..+|++++|+.+|+++++++|++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4578999999999999999999999999999999999999999999999999999999999999998

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=9.6e-10  Score=112.49  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=103.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH------HHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~~~  459 (562)
                      ...+...|..+...|++++|+..|.+++...|.....             ..+-....+.      ....+++++|.++.
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  214 (388)
T 1w3b_A          135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK  214 (388)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            4567789999999999999999999999987753211             0000011111      12345677788888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      ..+++++|+..+++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.....+..+.. ..
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~  293 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE-DC  293 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH-HH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HH
Confidence            88888888888888888888888888888888888888888888888888888888877777777766666555443 34


Q ss_pred             HHhhcc
Q 008540          540 YGNMFA  545 (562)
Q Consensus       540 ~~~~f~  545 (562)
                      |.++..
T Consensus       294 ~~~al~  299 (388)
T 1w3b_A          294 YNTALR  299 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.05  E-value=2e-09  Score=85.19  Aligned_cols=81  Identities=33%  Similarity=0.419  Sum_probs=75.1

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ..+++++|.++.++++|++|+..+++++..+|++..+++++|.+|..+|++++|+..|+++++++|++..+...++.+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999988888877654


Q ss_pred             H
Q 008540          528 K  528 (562)
Q Consensus       528 ~  528 (562)
                      .
T Consensus        89 ~   89 (91)
T 1na3_A           89 K   89 (91)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.05  E-value=2.6e-09  Score=105.89  Aligned_cols=145  Identities=10%  Similarity=-0.004  Sum_probs=94.2

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-------------HHHHHHHH------HHHHHHhcHHHHHhh
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------------EEKKQAKA------LKVACNLNNAACKLK  460 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------~~~~~~~~------~~~~~~~nla~~~~k  460 (562)
                      ..+...|..++..|+|++|+..|++++...|.......             +-......      ....+++++|.++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34566777888888888888888888877766543310             00000000      112346677777777


Q ss_pred             cc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          461 LK-DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       461 ~~-~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      ++ ++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+.....+..++. ..
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~  181 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE-RF  181 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH-HH
Confidence            77 77777777777777777777777777777777777777777777777777777666666666666655554433 34


Q ss_pred             HHhhcc
Q 008540          540 YGNMFA  545 (562)
Q Consensus       540 ~~~~f~  545 (562)
                      |.+...
T Consensus       182 ~~~al~  187 (330)
T 3hym_B          182 FSQALS  187 (330)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.05  E-value=2.3e-09  Score=108.31  Aligned_cols=147  Identities=8%  Similarity=-0.016  Sum_probs=117.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------------------HHHH----HHHH-----
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------------------EEKK----QAKA-----  445 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------------------~~~~----~~~~-----  445 (562)
                      +..+...|..++..|++++|+..|++++...|.......                        ....    ....     
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  211 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  211 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence            345677888888888999999989888887765432211                        0000    0000     


Q ss_pred             -H--HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          446 -L--KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       446 -~--~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                       .  ...+++++|.++.++|++++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+
T Consensus       212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence             1  2467889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc
Q 008540          523 KTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       523 ~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      +.+....++..++. ..|.+....
T Consensus       292 ~~~~~~~g~~~~A~-~~~~~al~~  314 (368)
T 1fch_A          292 GISCINLGAHREAV-EHFLEALNM  314 (368)
T ss_dssp             HHHHHHHTCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHCCCHHHHH-HHHHHHHHh
Confidence            99988887776554 355555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.04  E-value=1.3e-09  Score=92.19  Aligned_cols=101  Identities=32%  Similarity=0.418  Sum_probs=91.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..++..|+++.|+..|++++...+...               .+++++|.++...+++++|+..+++++...|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3466789999999999999999999998866432               2377899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      .+..+++.+|.+|..+|++++|+..|++++.++|++
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.04  E-value=2e-09  Score=103.86  Aligned_cols=141  Identities=23%  Similarity=0.240  Sum_probs=114.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|+|++|+..|.+++.+........       ......++.++|.+|..+|++++|+.++.+++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999864331110       123455689999999999999999999999999


Q ss_pred             c--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (562)
Q Consensus       477 ~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (562)
                      +        +|....+++++|.+|..+|++++|+..|++++++        +|....+...++.+.....+..++. ..|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~  192 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE-TLY  192 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-HHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence            8        5778899999999999999999999999999999        6666677888888877777665543 345


Q ss_pred             Hhhcc
Q 008540          541 GNMFA  545 (562)
Q Consensus       541 ~~~f~  545 (562)
                      .+...
T Consensus       193 ~~~l~  197 (283)
T 3edt_B          193 KEILT  197 (283)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.03  E-value=1.7e-09  Score=96.44  Aligned_cols=97  Identities=21%  Similarity=0.215  Sum_probs=86.5

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ...++++|.+++++++|++|+..++++++++|++..+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 008540          528 KMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       528 ~~~~~~~~~~~~~~~~f~  545 (562)
                      .+.+..++. ..|.+.+.
T Consensus        91 ~~g~~~~A~-~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAK-EAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHH-HHHHHHHH
T ss_pred             HccCHHHHH-HHHHHHHH
Confidence            877766554 35555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.03  E-value=1.5e-09  Score=107.64  Aligned_cols=133  Identities=17%  Similarity=0.086  Sum_probs=115.6

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      +..+...|..++..| ++++|+..|++++...|....               ++.++|.++..++++++|+..++++++.
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---------------AWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345778899999999 899999999999988775443               3889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      .|++..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....++..++. ..|.+.....
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~  223 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE-KWFLDALEKI  223 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH-HHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998888777766554 3566665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.03  E-value=3.2e-09  Score=92.98  Aligned_cols=140  Identities=15%  Similarity=0.100  Sum_probs=108.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|+|++|+..|.+++.+.+.....         .....++.++|.++..++++++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3457788999999999999999999999999998764321         2345678899999999999999999999999


Q ss_pred             hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      .+.+..      ..+++++|.+|..+|++++|+..+++++.+.+..      ..+...++.+.....+..++. ..+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  155 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH  155 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence            876543      6789999999999999999999999999874322      234555666665555554433 344444


Q ss_pred             cc
Q 008540          544 FA  545 (562)
Q Consensus       544 f~  545 (562)
                      ..
T Consensus       156 ~~  157 (164)
T 3ro3_A          156 LE  157 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.01  E-value=1.5e-09  Score=95.44  Aligned_cols=97  Identities=14%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-------NVK-----ALYRRAQAYIQMADLDLAEFDIKKALEI----  511 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~a~a~~~l~~~~~A~~~~~~al~l----  511 (562)
                      ...+.++|.+++++|+|++|+..|+++|+++|+       +..     +|+++|.|+..+|+|++|+.+|.+|+++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            445789999999999999999999999999999       554     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          512 ---DPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       512 ---~p~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                         +|++..++    ...+.+...+.+.+++.. .|.+...
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAle  130 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVE  130 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHh
Confidence               99999888    888888888887776653 5555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.98  E-value=1.8e-09  Score=104.24  Aligned_cols=125  Identities=11%  Similarity=-0.022  Sum_probs=105.2

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008540          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (562)
Q Consensus       409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~  488 (562)
                      +...++|++|+..|+++++..+...           .....+++++|.++..+|+|++|+..++++++++|++..+++.+
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l   83 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTD-----------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL   83 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccC-----------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            3446889999999999998632111           12345688999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       489 a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      |.+|..+|++++|+..|+++++++|++..+...++.+....++..++. ..|.++..
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~  139 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQ  139 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence            999999999999999999999999999999999998887777665543 45555554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.97  E-value=3.2e-09  Score=104.64  Aligned_cols=97  Identities=13%  Similarity=0.067  Sum_probs=87.1

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (562)
Q Consensus       410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a  489 (562)
                      ...|++++|+..|+++++..|.+.               .+++++|.|+.++|+|++|+..++++++.+|+++.+++++|
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTL---------------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345899999999999999877543               34889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHH
Q 008540          490 QAYIQMADLDL-AEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       490 ~a~~~l~~~~~-A~~~~~~al~l~p~~~~~~~~  521 (562)
                      .++..+|++++ |...++++++++|+++.+...
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999976 578999999999999877653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.96  E-value=7.3e-09  Score=105.92  Aligned_cols=132  Identities=15%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|++..|+..|.+|+++.+.....        ......+++++|.+|..+|+|++|+.++++++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3456778888999999999999999999999887765431        12345668888888888888888888888888


Q ss_pred             hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHHHH
Q 008540          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEI-----D-PDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~-p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      ++.+..      ..+++++|.+|..+|++++|+.+|++|+++     + |....+...++.+...+++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            775433      358888888888888888888888888883     5 66666777777776665554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.96  E-value=3.5e-09  Score=86.22  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      .+++++|.+|+++|+|++|+..++++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.+
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4588999999999999999999999999999999999999999999999999999999999997653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.95  E-value=3e-09  Score=104.73  Aligned_cols=138  Identities=13%  Similarity=0.045  Sum_probs=106.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh-
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-  476 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~-  476 (562)
                      .+..+...|..++..++|++|+..|++|+.+.......         .....+++|+|.+|..+|+|++|+.+++++++ 
T Consensus       114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455678999998999999999999999965543332         12345689999999999999999999999994 


Q ss_pred             ------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          477 ------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       477 ------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                            ..+....+++++|.+|..+|+|++|+..+++|+++.+..      ..+...++.+...+++..++....|++.+
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence                  223446799999999999999999999999999986544      56777888887777643223334555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=4e-09  Score=110.72  Aligned_cols=125  Identities=14%  Similarity=0.049  Sum_probs=99.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..++.+|+|++|+..|++|+++.+......      .......+|.|+|.+|..+|+|++|+.++++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            45577899999999999999999999999876432110      001123458899999999999999999999998763


Q ss_pred             --------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          479 --------SRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       479 --------p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                              +....++..+|.++..++  +|++|+++|++|++++|+++++...+..+..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                    355788889998887765  699999999999999999998888777665444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.94  E-value=5.6e-09  Score=102.80  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=92.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|++|+..|++|++........        ......+++|+|.+|.++++|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45568899999999999999999999999987654322        2345667999999999999999999999999988


Q ss_pred             CCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008540          478 DSRN------VKALYRRAQAYIQMA-DLDLAEFDIKKALEID  512 (562)
Q Consensus       478 ~p~~------~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~  512 (562)
                      .+..      ..+|+++|.+|..+| .+++|+++|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            6543      789999999999999 5799999999999763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.94  E-value=4.9e-09  Score=84.68  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=65.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      .+++|.++++.++|++|+..++++++.+|++.. +++++|.+|..+|++++|+..|+++++++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            457899999999999999999999999999999 999999999999999999999999999999998766

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.94  E-value=7.8e-09  Score=88.59  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=86.3

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ...++++|.+++++++|++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...++.+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 008540          528 KMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       528 ~~~~~~~~~~~~~~~~f~  545 (562)
                      .+.+..++. ..|++...
T Consensus        89 ~~~~~~~A~-~~~~~a~~  105 (137)
T 3q49_B           89 EMESYDEAI-ANLQRAYS  105 (137)
T ss_dssp             HTTCHHHHH-HHHHHHHH
T ss_pred             HHhhHHHHH-HHHHHHHH
Confidence            877766554 35555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.93  E-value=1.4e-08  Score=107.14  Aligned_cols=143  Identities=16%  Similarity=0.135  Sum_probs=112.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      .+.+..+....+.+..+..+|+|++|+..|++++.+........       +...+.+++|+|.+|..+|+|++|+.+|+
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            45566677788888888899999999999999999876533221       12356668999999999999999999999


Q ss_pred             HHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHHHHHHHHH
Q 008540          473 KVLDL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKL---EYKTLKEKMKEYNKKE  536 (562)
Q Consensus       473 ~al~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~~~~~~---~l~~l~~~~~~~~~~~  536 (562)
                      ++|++     -|++   ...++++|.+|..+|+|++|+..|++|+++     .|+++.+..   .+..++..++++++++
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99975     2444   678999999999999999999999999974     688876555   4555566666666655


Q ss_pred             HHHHHhh
Q 008540          537 AKFYGNM  543 (562)
Q Consensus       537 ~~~~~~~  543 (562)
                      . +|+++
T Consensus       456 ~-~~~~~  461 (490)
T 3n71_A          456 F-MYHKM  461 (490)
T ss_dssp             H-HHHHH
T ss_pred             H-HHHHH
Confidence            4 45444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.93  E-value=7.6e-09  Score=109.37  Aligned_cols=119  Identities=17%  Similarity=0.139  Sum_probs=100.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh---ccCHHHHHHHHHHHHh
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKVLD  476 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k---~~~~~~A~~~~~~al~  476 (562)
                      ..+...|..++..|++++|+..|++++...+.......         ...+++++|.++.+   +|++++|+..+++++.
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            34567788888888888888888888888776643100         01248899999999   9999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      .+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877765543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.93  E-value=2.1e-09  Score=116.27  Aligned_cols=119  Identities=16%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      .|++++|+..|+++++..|.+.               .+++++|.++.++|+|++|+..++++++++|++..+++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDF---------------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4789999999999999877543               3488999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       492 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |..+|++++|++.|+++++++|++..+...++.+.....+.+++. ..|.+....
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  120 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA-AAYTRAHQL  120 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999988877776554 355555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=5.9e-10  Score=90.22  Aligned_cols=93  Identities=12%  Similarity=0.037  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ..++|..+++.|+|++|+..|+++++..|.+..              .+++++|.||.+++++++|+.+++++++++|++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD--------------EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            457899999999999999999999998775432              148899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ..++++        +.+.+|+..|+++..++|++.
T Consensus        69 ~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           69 PALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             THHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            998865        667889999999988888763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.92  E-value=1.7e-08  Score=99.71  Aligned_cols=147  Identities=11%  Similarity=0.041  Sum_probs=117.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------------------HHHHH----HHHH----
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------------------EEKKQ----AKAL----  446 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------------------~~~~~----~~~~----  446 (562)
                      ...+...|..++..|++++|+..|++++...+.......                        .....    ....    
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  168 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN  168 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence            345678899999999999999999999988765432210                        01111    1111    


Q ss_pred             --HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540          447 --KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (562)
Q Consensus       447 --~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~  524 (562)
                        ...++.++|.++.++|++++|+..++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence              245688999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 008540          525 LKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       525 l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      +....++..++. ..|.+....
T Consensus       249 ~~~~~g~~~~A~-~~~~~a~~~  269 (327)
T 3cv0_A          249 SYSNMSQYDLAA-KQLVRAIYM  269 (327)
T ss_dssp             HHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHhccHHHHH-HHHHHHHHh
Confidence            887777665544 355555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.91  E-value=6.9e-09  Score=84.93  Aligned_cols=97  Identities=13%  Similarity=0.077  Sum_probs=85.7

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKE  527 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~  527 (562)
                      +++++|.++.++++|++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++|+  +..+...++.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999  9999999998887


Q ss_pred             HH-HHHHHHHHHHHHhhcccc
Q 008540          528 KM-KEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       528 ~~-~~~~~~~~~~~~~~f~~~  547 (562)
                      .+ .+.+++. +.+.+.....
T Consensus        88 ~~~~~~~~A~-~~~~~~~~~~  107 (112)
T 2kck_A           88 YIEGKEVEAE-IAEARAKLEH  107 (112)
T ss_dssp             TCSSCSHHHH-HHHHHHGGGC
T ss_pred             HHhCCHHHHH-HHHHHHhhcc
Confidence            77 6665443 4565555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=5.2e-09  Score=103.85  Aligned_cols=118  Identities=14%  Similarity=0.037  Sum_probs=60.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-----------------HH-H---HH---------HHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------------EE-K---KQ---------AKALK  447 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------------~~-~---~~---------~~~~~  447 (562)
                      .+..+.+.|+.+.+.|+|++|+..|++|+.+.+.......                 ++ .   .+         .....
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            3455666677777777777777777777766543211100                 00 0   00         00112


Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ..+++|+|.+|.++|+|++|+.++++++.+.|.+      ..+++.+|.+|+.+|++++|+..|++++ ++|+..
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            3445555555555555555555555555544322      2345555555555555555555555555 555553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=7.1e-09  Score=102.87  Aligned_cols=102  Identities=19%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------------ChHHHHHH------------HHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------------GDEEKKQA------------KALK  447 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------------~~~~~~~~------------~~~~  447 (562)
                      +..+...|..+.. |+|++|+.+|++|+.+.+.....                   .++-....            ....
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            4556666666666 77777777777777666542110                   00000000            1122


Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-----ALYRRAQAYIQMADLDLAEF  503 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-----a~~~~a~a~~~l~~~~~A~~  503 (562)
                      ..++++++.|++.+|++++|+.++++++ ++|.+..     .+..++.++ ..++.+.+..
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            3478899999999999999999999999 9997643     345566655 4666554444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.90  E-value=5.4e-09  Score=82.60  Aligned_cols=84  Identities=26%  Similarity=0.315  Sum_probs=75.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..++|++|+..|++++...|.+.               .+++++|.++.+++++++|+..+++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456778899999999999999999999999876543               24789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 008540          478 DSRNVKALYRRAQAYIQMA  496 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~  496 (562)
                      +|++..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.90  E-value=5.7e-09  Score=92.84  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=83.6

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (562)
                      +..+.++|..+++.|+|++|+..|++++.+                  +|.+..+|+++|.||..+|+|++|+.+|++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445789999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       510 ~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      .++|++..+...++.+...+.+..++.. .|.+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~a  123 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLL  123 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHH
Confidence            9999999999999988888777665543 44433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.89  E-value=1.7e-08  Score=103.12  Aligned_cols=143  Identities=15%  Similarity=0.068  Sum_probs=103.8

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|++..|+..|.+|+.+.+.....        ......+++++|.+|..+|+|++|+.++++++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4456677778888888888888888888888877654332        11345667888888888888888888888888


Q ss_pred             hcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          476 DLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALE-----IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       476 ~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~-----l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      ++.+      ....+++++|.+|..+|++++|+..|++|+.     .+|....+...++.+...+++.+++. ..+.+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  288 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF-QFIEEGL  288 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Confidence            7632      1246788888888888888888888888888     66766677777777777666665443 3555554


Q ss_pred             ccc
Q 008540          545 AKM  547 (562)
Q Consensus       545 ~~~  547 (562)
                      ...
T Consensus       289 ~~~  291 (378)
T 3q15_A          289 DHI  291 (378)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.89  E-value=1.3e-08  Score=104.00  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=96.5

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      ....+..+...|..+...|+|++|+..|.+|+++.+.....         .....+++|+|.+|..+|++++|+.+++++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34456788899999999999999999999999998765321         345567899999999999999999999999


Q ss_pred             Hh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          475 LD-----LD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       475 l~-----~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      ++     .+ |....+++++|.+|..+|++++|+..|++|+++.
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            99     56 8889999999999999999999999999999884

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.89  E-value=4.5e-09  Score=112.04  Aligned_cols=151  Identities=15%  Similarity=0.045  Sum_probs=115.4

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc------------CCCChHHHHHHHH------HHHHHHhcHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD------------TSFGDEEKKQAKA------LKVACNLNNA  455 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~------------~~~~~~~~~~~~~------~~~~~~~nla  455 (562)
                      .....+..+...|..++..|++++|+..|++++...|..            .....+-......      ....+++++|
T Consensus       238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            344567778888888999999999999999988876641            0001111111111      1245688999


Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      .++..+++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....++..++
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988888888887777766554


Q ss_pred             HHHHHHhhcc
Q 008540          536 EAKFYGNMFA  545 (562)
Q Consensus       536 ~~~~~~~~f~  545 (562)
                      . ..|.++..
T Consensus       398 ~-~~~~~a~~  406 (537)
T 3fp2_A          398 I-KQYDIAKR  406 (537)
T ss_dssp             H-HHHHHHHH
T ss_pred             H-HHHHHHHH
Confidence            4 35555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.89  E-value=1.8e-08  Score=102.89  Aligned_cols=109  Identities=14%  Similarity=-0.024  Sum_probs=97.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|+|++|+..|.+|+++.+.....         .....+++|+|.+|..+|++++|+.++++++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            467788899999999999999999999999987654321         24566799999999999999999999999999


Q ss_pred             -----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          477 -----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       477 -----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                           .+|....+++++|.+|..+|++++|+..+++|+++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                 78888999999999999999999999999999998543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.88  E-value=6.4e-09  Score=90.25  Aligned_cols=102  Identities=15%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHH
Q 008540          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVLDLD-S-RNVKALYRR  488 (562)
Q Consensus       414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~al~~~-p-~~~ka~~~~  488 (562)
                      ....+.+.|.+++...+.               ...+.+++|.|+.+.+   +.++++..++.+++.+ | .+..++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~---------------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L   77 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   77 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCC---------------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence            345666777777653321               1234789999999988   7779999999999998 7 679999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       489 a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      |.+|+++++|++|+.+++++|+++|+|..+..+...+..++.
T Consensus        78 Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888887765553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.88  E-value=1.7e-08  Score=99.21  Aligned_cols=134  Identities=14%  Similarity=0.063  Sum_probs=99.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH---h
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL---D  476 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al---~  476 (562)
                      ..+...|..+...|+|++|+..|++|+..........         ....+++++|.+|..+++|++|+.++++++   +
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3345567777777788888888888887655433221         134578999999999999999999999999   4


Q ss_pred             cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008540          477 LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGN  542 (562)
Q Consensus       477 ~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~  542 (562)
                      ..|++    ..+++++|.+|..+|+|++|+..|++|+++.++.      ..+...++.+...+++.+++-...|++
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            45553    3799999999999999999999999999886431      456677777777666555442333443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.86  E-value=1.7e-08  Score=97.18  Aligned_cols=109  Identities=18%  Similarity=0.058  Sum_probs=93.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|++++|+..|.+|+.+........       ......++.++|.++..+|++++|+.++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567788999999999999999999999999864321110       02245568999999999999999999999999


Q ss_pred             hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       476 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      .+        +|....+++.+|.+|..+|++++|+..|++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7778899999999999999999999999999987

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.85  E-value=1.7e-08  Score=109.24  Aligned_cols=132  Identities=11%  Similarity=-0.029  Sum_probs=110.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|++++|+..|++++++.|.+.               .++++++.+|.+.|++++|+..++++++..
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG---------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556678888888888888888888887655432               248899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |++..+++.+|.+|...|++++|++.|+++++++|.+..+...+..+..+.++.+++. ..|.++...
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~  504 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI-NHFQNALLL  504 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHh
Confidence            9999999999999999999999999999999999999988888888877777665544 466666554

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.85  E-value=5.4e-09  Score=108.10  Aligned_cols=85  Identities=15%  Similarity=0.268  Sum_probs=76.3

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008540          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (562)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~  244 (562)
                      ..+..||.|++||.+.. +|+.|+++  .|+.|.+|.|+++|||+++|.||++|+++.|.||+..+||..+.        
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCCccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------
Confidence            35789999999999995 89999976  89999999999999999999999999999999999999996543        


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008540          245 VPPNATLQIALELVSWKT  262 (562)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (562)
                        ++.+++|+|+|.++..
T Consensus       227 --ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          227 --KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             --SSCEEEEEEECCEECC
T ss_pred             --CCceEEEEEEEEEEec
Confidence              6789999999998754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.85  E-value=2.4e-08  Score=98.20  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|++|+..|++|+.+.......        ......+++|+|.+|.++|+|++|+.++++++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999876654432        1122367899999999999999999999999987


Q ss_pred             CCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 008540          478 DSR------NVKALYRRAQAYIQMADLDLA-EFDIKKALEID  512 (562)
Q Consensus       478 ~p~------~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~  512 (562)
                      .+.      ...+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            543      278999999999999999999 88899998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.84  E-value=2.7e-08  Score=82.03  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      ..++++|.++...++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..++++++++|++..+...++.+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 008540          529 MKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f~  545 (562)
                      ..+..+.. ..|.+...
T Consensus        85 ~~~~~~A~-~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAK-RTYEEGLK  100 (118)
T ss_dssp             TTCHHHHH-HHHHHHHT
T ss_pred             HhhHHHHH-HHHHHHHH
Confidence            77665544 35555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.84  E-value=2e-08  Score=84.96  Aligned_cols=95  Identities=20%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT  524 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~~  524 (562)
                      ++++|.++++.|+|++|+..+++++..+|++.   .+++.+|.+|..+|++++|+..|++++.++|++   ..+...++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            67899999999999999999999999999998   899999999999999999999999999999999   788888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 008540          525 LKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       525 l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      +...+.+..++. ..|.++...
T Consensus        85 ~~~~~g~~~~A~-~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQ-QTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHcCCHHHHH-HHHHHHHHH
Confidence            887777665544 456665544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=1.4e-08  Score=104.44  Aligned_cols=125  Identities=14%  Similarity=0.083  Sum_probs=106.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|+|++|+..|+++++..+.+.           .....+++++|.+|..+|+|++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45677788999999999999999999999999865432           2344568899999999999999999999999


Q ss_pred             hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Q 008540          476 DL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       476 ~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~~~~~~  531 (562)
                      ++      +|....+++.+|.+|..+|++++|+..|++++.+      .|....+...++.+.....+
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            98      5777899999999999999999999999999998      44555677777777777666

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.83  E-value=2.7e-08  Score=97.51  Aligned_cols=140  Identities=22%  Similarity=0.234  Sum_probs=111.9

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|++++|+..|.+++.+........       ......+++++|.+|..+|++++|+..++++++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  139 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  139 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999864331100       123455688999999999999999999999998


Q ss_pred             cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (562)
Q Consensus       477 ~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (562)
                      +.        |....+++.+|.+|..+|++++|+..|++++.+        +|....+...++.+.....+..++. ..|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~  218 (311)
T 3nf1_A          140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE-TLY  218 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-HHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence            74        667889999999999999999999999999998        6666667777888777776665544 344


Q ss_pred             Hhhc
Q 008540          541 GNMF  544 (562)
Q Consensus       541 ~~~f  544 (562)
                      .++.
T Consensus       219 ~~al  222 (311)
T 3nf1_A          219 KEIL  222 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.83  E-value=2.8e-08  Score=86.82  Aligned_cols=108  Identities=21%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|++|+..|++++.+.+.....         .....+++++|.++..++++++|+..+++++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999998764321         234566889999999999999999999999987


Q ss_pred             CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          478 DS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       478 ~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                      .+      ....+++.+|.+|..+|++++|+..+++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            43      22678999999999999999999999999987554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.82  E-value=2.6e-08  Score=84.31  Aligned_cols=97  Identities=22%  Similarity=0.292  Sum_probs=85.9

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ...++++|.++.+.++|++|+..+++++..+|.+..+++.+|.+|..++++++|+..|+++++++|++..+...++.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 008540          528 KMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       528 ~~~~~~~~~~~~~~~~f~  545 (562)
                      ...+..++. ..|.+...
T Consensus        96 ~~~~~~~A~-~~~~~~~~  112 (133)
T 2lni_A           96 AMKDYTKAM-DVYQKALD  112 (133)
T ss_dssp             HTTCHHHHH-HHHHHHHH
T ss_pred             HHhhHHHHH-HHHHHHHH
Confidence            777666544 35555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.82  E-value=3.5e-08  Score=96.71  Aligned_cols=109  Identities=19%  Similarity=0.118  Sum_probs=92.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|++++|+..|.+++.+........       ......+++++|.++..+|++++|+..+++++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566788999999999999999999999999864321000       02245568899999999999999999999999


Q ss_pred             hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       476 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      .+        +|....+++.+|.+|..+|++++|+..|++++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7777899999999999999999999999999985

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.82  E-value=2.6e-08  Score=91.35  Aligned_cols=129  Identities=12%  Similarity=0.103  Sum_probs=101.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|++|+..|.+++.+......         ......+++++|.++..+|++++|+.++++++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999998765432         1234567899999999999999999999999998


Q ss_pred             ---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHHHHHHHH
Q 008540          478 ---DS----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP--DNRD----VKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       478 ---~p----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p--~~~~----~~~~l~~l~~~~~~~~~~  535 (562)
                         .+    ....+++++|.+|..+|++++|+..+++++.+.+  .+..    +...++.+.....+..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence               33    3367899999999999999999999999997643  2221    234555555555544433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.80  E-value=7.5e-08  Score=104.12  Aligned_cols=147  Identities=12%  Similarity=0.038  Sum_probs=114.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-------------HHHHHHHH------HHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------------EEKKQAKA------LKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------~~~~~~~~------~~~~~~~nla~~~~  459 (562)
                      +..+...|..+++.|++++|+..|++++...+.+.....             +-......      ....++++++.+|.
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (597)
T 2xpi_A          305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL  384 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            455678899999999999999999999988776443210             00011111      12456778899999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                      +.|++++|+..++++++++|.+..+|+.+|.+|...|++++|++.|+++++++|++..+...+..+..+....+++. ..
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~  463 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN-EY  463 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999988888888888877777665544 46


Q ss_pred             HHhhccc
Q 008540          540 YGNMFAK  546 (562)
Q Consensus       540 ~~~~f~~  546 (562)
                      |.++...
T Consensus       464 ~~~~~~~  470 (597)
T 2xpi_A          464 LQSSYAL  470 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6766554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.79  E-value=4.3e-08  Score=99.99  Aligned_cols=129  Identities=16%  Similarity=0.102  Sum_probs=102.5

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|+|++|+..|++++.+.+.....         .....+++++|.+|..+|++++|+.++++++.
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            345678889999999999999999999999998765431         23455688999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHH
Q 008540          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~  534 (562)
                      +.+..      ..+++.+|.+|..+|++++|+..|++++.+.+..      ..+...++.+....++..+
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            87655      7788999999999999999999999999885543      3455566666555554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.76  E-value=4.9e-08  Score=96.27  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=111.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+...|..++..|++++|+..|++++.+.+.....         .....++.++|.++..+|++++|+..+++++.
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  251 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345578889999999999999999999999988764321         23455689999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      +.+..      ..+++.+|.+|..+|++++|+..|++++.+.+..      ..+...++.+.....+..++. ..|.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~  330 (338)
T 3ro2_A          252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKHL  330 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Confidence            87655      7899999999999999999999999999886543      235566777776666665443 4566555


Q ss_pred             ccc
Q 008540          545 AKM  547 (562)
Q Consensus       545 ~~~  547 (562)
                      ...
T Consensus       331 ~~~  333 (338)
T 3ro2_A          331 EIS  333 (338)
T ss_dssp             HC-
T ss_pred             HHH
Confidence            443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.76  E-value=2.7e-08  Score=98.17  Aligned_cols=122  Identities=17%  Similarity=0.119  Sum_probs=100.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc-
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-  477 (562)
                      +..+...|..++..|+|++|+..|++++...+.+.           .....++.++|.++..+|++++|+..+++++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999855422           234556889999999999999999999999987 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHH
Q 008540          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR------DVKLEYKTLKEKMKE  531 (562)
Q Consensus       478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~------~~~~~l~~l~~~~~~  531 (562)
                           .+....+++.+|.+|..+|++++|+..|++++++.+...      .+...++.+.....+
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                 456688999999999999999999999999999865432      255566666665555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=8e-08  Score=83.02  Aligned_cols=96  Identities=21%  Similarity=0.163  Sum_probs=84.9

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..++++|.++++.++|++|+..++++++.+|++   ..+++++|.+|..++++++|+..|++++.++|++..+...++.+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            347789999999999999999999999999998   89999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 008540          526 KEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ...+.+..++. ..|.+...
T Consensus       109 ~~~~~~~~~A~-~~~~~al~  127 (148)
T 2dba_A          109 LEKLGRLDQAV-LDLQRCVS  127 (148)
T ss_dssp             HHHHTCHHHHH-HHHHHHHH
T ss_pred             HHHcCCHHHHH-HHHHHHHH
Confidence            88877766554 45555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.74  E-value=1.4e-07  Score=79.20  Aligned_cols=98  Identities=16%  Similarity=0.243  Sum_probs=86.2

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ...+++++|.++...++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..+++++.++|++..+...++.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 008540          527 EKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       527 ~~~~~~~~~~~~~~~~~f~  545 (562)
                      ....+..+.. ..|.+...
T Consensus        91 ~~~~~~~~A~-~~~~~~~~  108 (131)
T 2vyi_A           91 SSLNKHVEAV-AYYKKALE  108 (131)
T ss_dssp             HHTTCHHHHH-HHHHHHHH
T ss_pred             HHhCCHHHHH-HHHHHHHh
Confidence            7777665544 35555444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.73  E-value=9.4e-08  Score=84.34  Aligned_cols=99  Identities=18%  Similarity=0.198  Sum_probs=86.5

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ....++++|.+++..++|++|+..+.+++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...++.+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34558899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 008540          527 EKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       527 ~~~~~~~~~~~~~~~~~f~~  546 (562)
                      ..+.+..++. ..|.+....
T Consensus        92 ~~~~~~~~A~-~~~~~a~~~  110 (166)
T 1a17_A           92 MALGKFRAAL-RDYETVVKV  110 (166)
T ss_dssp             HHTTCHHHHH-HHHHHHHHH
T ss_pred             HHhccHHHHH-HHHHHHHHh
Confidence            7777665543 355555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.73  E-value=6.7e-08  Score=95.76  Aligned_cols=147  Identities=10%  Similarity=0.056  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-CChH---------HHHHHHHHH----------HHHHhcHHHHHh-
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDE---------EKKQAKALK----------VACNLNNAACKL-  459 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~~---------~~~~~~~~~----------~~~~~nla~~~~-  459 (562)
                      .+...|..+.+.|++++|...|++|+++.|.+.. ....         ..+......          ..+|...+.+.. 
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4556666666777777777777777775554321 1000         000000000          011222222222 


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI---DPD-NRDVKLEYKTLKEKMKEYNKK  535 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l---~p~-~~~~~~~l~~l~~~~~~~~~~  535 (562)
                      .+|++++|+..++++++.+|+++.+|..+|..+..+|++++|+..|++|+..   +|+ +..++..+..+..........
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            2566666666666666666666666666666666667777777777777664   443 455666555555555444333


Q ss_pred             HHHHHHhhccccC
Q 008540          536 EAKFYGNMFAKMT  548 (562)
Q Consensus       536 ~~~~~~~~f~~~~  548 (562)
                       ...++++.+...
T Consensus       261 -~~~~~~a~~~~p  272 (308)
T 2ond_A          261 -LKVEKRRFTAFR  272 (308)
T ss_dssp             -HHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHcc
Confidence             245555554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.72  E-value=1.6e-07  Score=97.36  Aligned_cols=123  Identities=12%  Similarity=0.067  Sum_probs=97.4

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+....+.+...-+.|+|++|+..|++++.+....-...       +...+..++|+|.+|..+|+|++|+.+|+++|
T Consensus       295 ~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          295 VRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            34455555666666667899999999999999876433221       12355668999999999999999999999999


Q ss_pred             hc-----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008540          476 DL-----DS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTL  525 (562)
Q Consensus       476 ~~-----~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l  525 (562)
                      ++     -|   +-...|+++|.+|..+|+|++|+..|++|+++     .|+++.+......+
T Consensus       368 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          368 KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            75     23   44678999999999999999999999999975     78998877766544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.72  E-value=1.1e-07  Score=91.99  Aligned_cols=75  Identities=15%  Similarity=0.059  Sum_probs=45.3

Q ss_pred             HHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          450 CNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       450 ~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      +++++|.+|..    .+++++|+.+++++++.  +++.+++++|.+|..    .+++++|+.+|++|++++  +..+...
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  151 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence            35566666666    66666666666666655  356666666666666    666666666666666654  3445555


Q ss_pred             HHHHHHH
Q 008540          522 YKTLKEK  528 (562)
Q Consensus       522 l~~l~~~  528 (562)
                      ++.+...
T Consensus       152 lg~~~~~  158 (273)
T 1ouv_A          152 LGSLYDA  158 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            5555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.72  E-value=3.3e-08  Score=100.92  Aligned_cols=122  Identities=17%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc-
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-  477 (562)
                      +..+...|..++..|+|++|+..|++++...+.+.           .....+++++|.++..+|+|++|+.++++++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999865432           234566889999999999999999999999887 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHH
Q 008540          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKE  531 (562)
Q Consensus       478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~  531 (562)
                           .|....+++.+|.+|..+|++++|+..|++++.+.|..      ..+...++.+.....+
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence                 45568899999999999999999999999999987653      2366666766666666

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.71  E-value=4.3e-08  Score=100.66  Aligned_cols=137  Identities=13%  Similarity=0.147  Sum_probs=106.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|++|+..|++++++.+.....         .....+++++|.+|..+|++++|+.++++++.+
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34567789999999999999999999999998764321         234456889999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       478 ~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      .+..      ..+++.+|.+|..+|++++|+..|++++.+.+..      ..+...++.+...+.+..++. ..|++..
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  370 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL-KYAEQHL  370 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            7754      7899999999999999999999999999885442      235556666666555544332 3444433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.70  E-value=1.7e-07  Score=86.10  Aligned_cols=98  Identities=13%  Similarity=0.005  Sum_probs=85.1

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      ....+.++|.++++.++|++|+..+++++.+.|.+.                .+++++|.+|..+|+|++|+.+|+++++
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            344578999999999999999999999999999887                8999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       511 l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ++|++..+...++.+...+.+..++. ..|++...
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~  150 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAK-ENLYKAAS  150 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHH-HHHHHHHH
Confidence            99999999999998887777766543 34554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.69  E-value=1.9e-07  Score=77.65  Aligned_cols=98  Identities=28%  Similarity=0.370  Sum_probs=85.4

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ..+++++|.++...+++++|+..+++++..+|.+..+++.+|.+|..+|++++|+..|++++.++|.+..+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999988888888877


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 008540          528 KMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       528 ~~~~~~~~~~~~~~~~f~~  546 (562)
                      ...+..+.. ..|.++...
T Consensus        89 ~~~~~~~A~-~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAI-EYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHH-HHHHHHHHH
T ss_pred             HhcCHHHHH-HHHHHHHHh
Confidence            766665443 455555543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.67  E-value=9.4e-08  Score=93.51  Aligned_cols=95  Identities=16%  Similarity=0.176  Sum_probs=84.5

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      ..+.++|.++++.|+|++|+..+++++..+|++..+++++|.+|..+|++++|+.+|++|++++|++..+...++.+...
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34779999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHHHhhc
Q 008540          529 MKEYNKKEAKFYGNMF  544 (562)
Q Consensus       529 ~~~~~~~~~~~~~~~f  544 (562)
                      +++..++.. .|.+..
T Consensus        85 ~g~~~~A~~-~~~~al   99 (281)
T 2c2l_A           85 MESYDEAIA-NLQRAY   99 (281)
T ss_dssp             TTCHHHHHH-HHHHHH
T ss_pred             cCCHHHHHH-HHHHHH
Confidence            776665543 444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=1.1e-07  Score=94.21  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             hhhHHHHHHHH-------HcCcH-------HHHHHHHHHHHH-HhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH
Q 008540          400 GKKKEQGNTLF-------KAGKY-------ARASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (562)
Q Consensus       400 ~~~~~~G~~~~-------~~g~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~  464 (562)
                      ..+...|..+.       +.|++       ++|+..|++|+. +.|....               +|.++|.++.++|++
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~---------------~~~~~~~~~~~~~~~  115 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---------------LYFAYADYEESRMKY  115 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH---------------HHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH---------------HHHHHHHHHHhcCCH
Confidence            34555555554       45775       999999999999 5664322               244444444455555


Q ss_pred             HHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          465 KQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       465 ~~A~~~~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ++|+..|+++++++|.+.. +|+.+|.++..+|++++|+..|++|++++|.+
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            5555555555555444443 44444444444444444444444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.66  E-value=1.1e-07  Score=79.94  Aligned_cols=96  Identities=22%  Similarity=0.247  Sum_probs=83.5

Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-------RDVKLE  521 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-------~~~~~~  521 (562)
                      ..++++|.++...++|++|+..+.+++..+|.+..+++.+|.+|..+|++++|+..|++++.++|++       ..+...
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999998877       778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          522 YKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ++.+....+...++. ..|.+...
T Consensus        85 la~~~~~~~~~~~A~-~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAI-HFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHhccHHHHH-HHHHHHHH
Confidence            888877776665543 45555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=3.5e-07  Score=94.89  Aligned_cols=126  Identities=8%  Similarity=-0.026  Sum_probs=99.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+......-..+.++|+|++|+..|++++......-...       +...+.++.|+|.+|..+|+|++|+.+|+++|.
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3445555666678889999999999999998754322211       123566789999999999999999999999997


Q ss_pred             c-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Q 008540          477 L-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       477 ~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~~~~  529 (562)
                      +     -|++   ...++++|.+|..+|++++|+..|++|+++     .|+++.+...+..+..-.
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            5     2344   678999999999999999999999999975     789988777766554433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.65  E-value=6.7e-08  Score=101.30  Aligned_cols=121  Identities=15%  Similarity=0.060  Sum_probs=96.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--cCHHHHHHHHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKLCTKVLD  476 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A~~~~~~al~  476 (562)
                      +..+.+.|..++..|+|++|+..|++++.+.+........       ....++.++|.++++.  ++|++|+.+++++++
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC-------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch-------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            3456789999999999999999999999998764322100       0123467787777665  479999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQ---MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                      ++|+++.+++.+|.++..   .+++++|++.|++|++++|++..+...+....
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            999999999999988665   46778999999999999999988877776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.65  E-value=8.1e-09  Score=109.18  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=88.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|+|++|+..|++|+++.|...               .+++|+|.+|.++|+|++|+..++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------------KGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999877543               348899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008540          479 SRNVKALYRRAQA--YIQMADLDLAEFDIK-----------KALEIDPDN  515 (562)
Q Consensus       479 p~~~ka~~~~a~a--~~~l~~~~~A~~~~~-----------~al~l~p~~  515 (562)
                      |++..+++.++.+  +..++++++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999  899999999999999           888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.64  E-value=2.1e-07  Score=100.27  Aligned_cols=116  Identities=13%  Similarity=0.005  Sum_probs=105.5

Q ss_pred             HhhhHHHHHHHHHcCc----------HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHH
Q 008540          399 AGKKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQ  466 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~  466 (562)
                      ...+..+|..+.+.++          |++|+..|.++++..|.....               |++++.+..+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a---------------W~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT---------------WHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcccccHHH
Confidence            4567778888888777          999999999999998876544               899999999999  7899


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      |+..|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+|..++.....+...+
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999999999999999 999999999999999999999999988887664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.61  E-value=2.9e-07  Score=89.02  Aligned_cols=109  Identities=15%  Similarity=0.058  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC--
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--  478 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--  478 (562)
                      ....+|..+++.++|..|+..|++++..-..             .+...+++++|.++..+|++++|+.+|++++.-.  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            5567788888888888888888765543110             0223458899999999999999999999998654  


Q ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          479 SR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       479 p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      |. ...+++++|.|+.++|+.++|+..|++++..+|+ ..+...|.
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            55 6679999999999999999999999999999999 77766654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.61  E-value=3.4e-07  Score=74.95  Aligned_cols=79  Identities=25%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++.+|..++++++|..|+..+++|++..       +.....+..+|.||.++|+++.|+..+++|++++|++..+...++
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            6689999999999999999999999863       356789999999999999999999999999999999998877777


Q ss_pred             HHHHHH
Q 008540          524 TLKEKM  529 (562)
Q Consensus       524 ~l~~~~  529 (562)
                      .+...+
T Consensus        88 ~~~~~~   93 (104)
T 2v5f_A           88 YFEYIM   93 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.60  E-value=1.7e-07  Score=87.55  Aligned_cols=129  Identities=14%  Similarity=0.011  Sum_probs=93.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc---------CCC----ChHHH-H----HHHHHHHHHHhcHHHHHhh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---------TSF----GDEEK-K----QAKALKVACNLNNAACKLK  460 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~---------~~~----~~~~~-~----~~~~~~~~~~~nla~~~~k  460 (562)
                      +..+...|..++..+++++|+..|++|++.....         ...    ..++- .    ....-...+++|+|.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            4566778888888888888888888887652110         000    01110 0    0111134567899999988


Q ss_pred             ----ccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          461 ----LKDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       461 ----~~~~~~A~~~~~~al~~~p--~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                          .+++++|+.+++++++..+  .++.+++++|.+|..    .+++++|+.+|++|.++ |.+..+...|+.+...
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence                8899999999999999887  458999999999999    88999999999999988 6666677777777644

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.59  E-value=2.6e-08  Score=101.50  Aligned_cols=84  Identities=11%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      .+..||.|++||.+.. +|+.|+++  .++.|.+|.|+++|||+++|.||+.|+++.|.||....||..+          
T Consensus       160 ~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~----------  228 (392)
T 1t11_A          160 AAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----------  228 (392)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----------
T ss_pred             CCCCCCEEEEEEEEEE-CCEEccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----------
Confidence            5789999999999995 89999976  7899999999999999999999999999999997334677432          


Q ss_pred             CCCCeEEEEEEeecccc
Q 008540          246 PPNATLQIALELVSWKT  262 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (562)
                      .+|.+++|+|+|.++..
T Consensus       229 laGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          229 LKGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             TSSCEEEECCCEEEEEE
T ss_pred             CCCCeEEEEEEEEEEEc
Confidence            36789999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.59  E-value=5.5e-08  Score=81.33  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             hccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDL---DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~---~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  536 (562)
                      .+|++++|+..+++++++   +|++..+++.+|.+|..+|+|++|+..|+++++++|++..+...++.+...+.+..++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999988888776654


Q ss_pred             HHHHHhhcc
Q 008540          537 AKFYGNMFA  545 (562)
Q Consensus       537 ~~~~~~~f~  545 (562)
                      . .+.+...
T Consensus        82 ~-~~~~al~   89 (117)
T 3k9i_A           82 E-LLLKIIA   89 (117)
T ss_dssp             H-HHHHHHH
T ss_pred             H-HHHHHHH
Confidence            3 4444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.59  E-value=5.8e-07  Score=86.83  Aligned_cols=91  Identities=16%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             HHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540          449 ACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKL  520 (562)
Q Consensus       449 ~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~  520 (562)
                      .+++++|.+|..    .+++++|+.+++++++.+  +..+++++|.+|..    .+++++|+.+|+++++++  +..+..
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  186 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCF  186 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            457788888888    888888888888888875  67888888888888    888888888888888774  556777


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHhhc
Q 008540          521 EYKTLKEK----MKEYNKKEAKFYGNMF  544 (562)
Q Consensus       521 ~l~~l~~~----~~~~~~~~~~~~~~~f  544 (562)
                      .++.+...    .....++. ..|++..
T Consensus       187 ~lg~~~~~g~~~~~~~~~A~-~~~~~a~  213 (273)
T 1ouv_A          187 NAGNMYHHGEGATKNFKEAL-ARYSKAC  213 (273)
T ss_dssp             HHHHHHHHTCSSCCCHHHHH-HHHHHHH
T ss_pred             HHHHHHHcCCCCCccHHHHH-HHHHHHH
Confidence            77777666    55544433 3555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.58  E-value=1.6e-07  Score=82.35  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      .++++|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++.+++..++.+...
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3677899999999999999999999999999999999876          599999999999999999999999999877


Q ss_pred             HH
Q 008540          529 MK  530 (562)
Q Consensus       529 ~~  530 (562)
                      +.
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.58  E-value=5.9e-07  Score=82.08  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=91.2

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+...|..++..|++++|+..|.+++.+.......        ......+++++|.++..+|++++|+.++++++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999999997654422        12345668999999999999999999999999


Q ss_pred             hcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540          476 DLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (562)
Q Consensus       476 ~~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p  513 (562)
                      .+.+  .+    ..++..+|.+|..+|++++|+..|++++++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            7632  22    44678999999999999999999999998743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.56  E-value=2.2e-07  Score=94.77  Aligned_cols=95  Identities=23%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLD----------------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~----------------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p  513 (562)
                      .+.++|.+++++++|++|+..|+++++                ++|.+..+|+++|.||+.+++|++|+.+|++|++++|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            377899999999999999999999998                7888899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          514 DNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       514 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ++..+...++.+...+.+.+++. ..|++...
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~-~~l~~Al~  335 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQAL-ADLKKAQE  335 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHH-HHHHHHHH
Confidence            99999999999888887776554 35555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.55  E-value=3.3e-07  Score=98.68  Aligned_cols=137  Identities=10%  Similarity=-0.003  Sum_probs=110.6

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC--------
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------  463 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~--------  463 (562)
                      ..|++.-...........+.++| ++|+..|.+++.+.|.....               |++++.+..++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~ta---------------W~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATL---------------WNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHhcccccchhhhh
Confidence            44555545555555556666665 57899999999999876544               8999999999998        


Q ss_pred             --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          464 --YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (562)
Q Consensus       464 --~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (562)
                        +++|+..++++++.+|++..||+.|+-++..++  ++++|++++.++++++|.|..++...+.+...+....+++-..
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence              999999999999999999999999999999999  7799999999999999999999988887777665222344444


Q ss_pred             HHhhc
Q 008540          540 YGNMF  544 (562)
Q Consensus       540 ~~~~f  544 (562)
                      +.++.
T Consensus       167 ~~~~I  171 (567)
T 1dce_A          167 TDSLI  171 (567)
T ss_dssp             HHTTT
T ss_pred             HHHHH
Confidence            44443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.55  E-value=2.1e-07  Score=86.85  Aligned_cols=110  Identities=15%  Similarity=0.117  Sum_probs=83.3

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc----CHHHHHHHHHHHHhcCCCC
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK----DYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~----~~~~A~~~~~~al~~~p~~  481 (562)
                      ...++..|..-.....|.+|+.++.....          .-...+++++|.+|.. +    ++++|+.+++++++  +.+
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~   84 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA----------QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS   84 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC
Confidence            34455555544445566677766554221          1134568899999998 7    89999999999965  578


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEK  528 (562)
Q Consensus       482 ~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~  528 (562)
                      +.+++++|.+|..    .+++++|+.+|++|.++.|.  +..+...|+.+...
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            9999999999998    89999999999999999883  46788888877655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.52  E-value=2e-07  Score=84.00  Aligned_cols=115  Identities=10%  Similarity=0.036  Sum_probs=90.5

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC--------------hHHHHHHHH------HHHHHHhcH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--------------DEEKKQAKA------LKVACNLNN  454 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------------~~~~~~~~~------~~~~~~~nl  454 (562)
                      ....+..+...|..+++.|++++|+..|++++...| +....              .+....++.      -...+++++
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            344566788899999999999999999999887655 21100              000111111      124678999


Q ss_pred             HHHHhhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          455 AACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      |.++..+|++++|+..++++++.+|++  ..+++++|.+|..+|++++|+..|++++.
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999999976  66999999999999999999999999875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.51  E-value=8.7e-07  Score=72.47  Aligned_cols=82  Identities=18%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+.+.|..+|+.++|..|+..|++|++..+......        ..+..++.++|.|+.++|+++.|+..++++++++|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            4567899999999999999999999999876543110        11445688999999999999999999999999999


Q ss_pred             CCHHHHHHHH
Q 008540          480 RNVKALYRRA  489 (562)
Q Consensus       480 ~~~ka~~~~a  489 (562)
                      ++..++.+++
T Consensus        78 ~~~~~~~n~~   87 (104)
T 2v5f_A           78 EHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHhhHH
Confidence            9999988886

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.51  E-value=2.6e-07  Score=91.14  Aligned_cols=130  Identities=12%  Similarity=-0.048  Sum_probs=109.1

Q ss_pred             hhHHHHHHH----HHc---CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHH--HHHHHH
Q 008540          401 KKKEQGNTL----FKA---GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK--QAEKLC  471 (562)
Q Consensus       401 ~~~~~G~~~----~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~--~A~~~~  471 (562)
                      .+..++..+    ...   +++.+++..+.++++..|.+...               +++++.+..+++.|+  +++..|
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a---------------W~~R~~vl~~l~~~~~~~EL~~~  169 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV---------------WSYRKWLVDTFDLHNDAKELSFV  169 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcccChHHHHHHH
Confidence            455666666    444   78999999999999998876544               889999999999999  999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          472 TKVLDLDSRNVKALYRRAQAYIQMAD------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       472 ~~al~~~p~~~ka~~~~a~a~~~l~~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      +++++.+|.|..||+.|+.++..++.      ++++++++++++.++|+|..++..++.+..+.......-...+.+++.
T Consensus       170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~  249 (306)
T 3dra_A          170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD  249 (306)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence            99999999999999999999999998      999999999999999999999999888877666544434445554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.51  E-value=7.9e-07  Score=87.72  Aligned_cols=117  Identities=12%  Similarity=-0.137  Sum_probs=101.9

Q ss_pred             HhhhHHHHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHH----hhc---cCHHHHHH
Q 008540          399 AGKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKL---KDYKQAEK  469 (562)
Q Consensus       399 a~~~~~~G~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~k~---~~~~~A~~  469 (562)
                      ...+..+|..+...+  .+++|+..+.+++...|.....               +++++.+.    .++   +++++++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a---------------W~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI---------------WNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH---------------HHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH---------------HHHHHHHHHHHHHhccccCCHHHHHH
Confidence            456778888888888  8999999999999988876654               77787777    666   78999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLD--LAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~--~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .|+++|+.+|.|..+|+.|+.++..++.++  ++++.+.++++++|.|-.++.....+...+.
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999  9999999999999999988887776655543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.50  E-value=7.5e-07  Score=74.38  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=84.2

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH---HHHHHHHHHhcC-C-CCHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ---AEKLCTKVLDLD-S-RNVKALY  486 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~---A~~~~~~al~~~-p-~~~ka~~  486 (562)
                      ......+.+.|.+++...+.               ...+.+|+|.|+.+.++...   +|..+..++..+ | .+..++|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~---------------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY   78 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCC---------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            34455667777777653221               12346799999999887777   999999999987 5 6789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .+|.+|+++|+|++|+.+++.+|+++|+|..+..+...+..++.
T Consensus        79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888887766654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.49  E-value=1.6e-06  Score=87.83  Aligned_cols=126  Identities=13%  Similarity=0.029  Sum_probs=88.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+...|..++..|+|+.|...|.+++.+.+.....         .....+++++|.++..+|+|++|+..+++++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44567788888999999999999999999887754321         123445677888888888888888888888775


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHH
Q 008540          478 D--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----RDVKLEYKTLKEKMKEY  532 (562)
Q Consensus       478 ~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-----~~~~~~l~~l~~~~~~~  532 (562)
                      .        |....++..+|.+|..+|++++|+..+++++.+.+..     ..+...+..+.....+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~  190 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL  190 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence            4        3345667778888888888888888888888776642     22344444444444433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.46  E-value=8.7e-07  Score=70.82  Aligned_cols=68  Identities=19%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             HHhcHHHHHhhccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540          450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      ++..+|.+++..++   ..+|...++++|.+||+++++++.+|.+++..|+|++|+..|+++++.+|.++.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            36678888876555   799999999999999999999999999999999999999999999999998543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.43  E-value=1.6e-06  Score=86.62  Aligned_cols=119  Identities=14%  Similarity=0.041  Sum_probs=102.4

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~~a~  490 (562)
                      ....++|+..+.++|.+.|.....               +++++.+...++ .+++++..++++|..+|.|..+|+.|+.
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~yta---------------Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTV---------------WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHH---------------HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            445578999999999999876543               889999999999 5999999999999999999999999999


Q ss_pred             HHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Q 008540          491 AYIQM-A-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-------KKEAKFYGNMFA  545 (562)
Q Consensus       491 a~~~l-~-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~~f~  545 (562)
                      ++..+ + +++++++.+.++++++|.|-.++...+.+...+....       ..+-..+.++..
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            99999 8 9999999999999999999999988888877776654       345556665554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.43  E-value=3.8e-06  Score=83.47  Aligned_cols=100  Identities=13%  Similarity=0.014  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (562)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka~~~~a~a~  492 (562)
                      +.+++..+..++...|.+...               +++++.+..+++  .|++++..|+++++.+|.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~~~PKny~a---------------W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGT---------------WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            789999999999988876544               889999999998  499999999999999999999999999999


Q ss_pred             HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          493 IQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       493 ~~l~~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      ..++. ++++++++.++++.+|.|..++.....+...+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999 69999999999999999999998888876666

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.39  E-value=5.8e-07  Score=72.81  Aligned_cols=81  Identities=12%  Similarity=0.037  Sum_probs=66.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+...|..+++.|+|++|+..|++++++.|.....               ++++|.||.++|++++|+..+++++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT---------------YYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4567889999999999999999999999998876543               8999999999999999999999999987


Q ss_pred             CC--CHHHHHHHHHHHHH
Q 008540          479 SR--NVKALYRRAQAYIQ  494 (562)
Q Consensus       479 p~--~~ka~~~~a~a~~~  494 (562)
                      |.  +..+...+...+..
T Consensus        72 ~~~~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKLK   89 (100)
T ss_dssp             HHHSCHHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHHH
Confidence            64  34444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.39  E-value=1.5e-06  Score=86.25  Aligned_cols=129  Identities=9%  Similarity=-0.023  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHcCcHH-HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC----------HHHHHH
Q 008540          401 KKKEQGNTLFKAGKYA-RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEK  469 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~----------~~~A~~  469 (562)
                      .+.+.-....++|+|. +|+..+.+++.+.|.....               ++.++.+...++.          +++++.
T Consensus        31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yta---------------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~   95 (331)
T 3dss_A           31 SATQAVFQKRQAGELDESVLELTSQILGANPDFATL---------------WNCRREVLQHLETEKSPEESAALVKAELG   95 (331)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence            3334444444677776 7999999999998875543               7777777777665          799999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      .++.+|..+|.|..+|+.|+.++..++.  ++++++.+.++++++|.|-.++..-+.+...+....+.+-..+.++.
T Consensus        96 ~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A           96 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            9999999999999999999999999994  99999999999999999999888877776655442233344444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.36  E-value=2.1e-06  Score=74.09  Aligned_cols=98  Identities=11%  Similarity=-0.056  Sum_probs=79.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCC
Q 008540          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~  480 (562)
                      .|..++..+.+.+|+..|++|.+.-.                 ..+++|+|.+|..    .+++++|+.+++++.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            77777777888889999999987521                 2347899999998    88999999999999886  6


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          481 NVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       481 ~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++.+++++|.+|..    .+++++|+.+|++|.++.  +..+...|.
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            88999999999999    899999999999998873  444544443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.35  E-value=8.1e-07  Score=85.91  Aligned_cols=128  Identities=11%  Similarity=-0.024  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ....+..+...|+|++|...|..++...|.               .. +++++|.++++.++|++|+..+++++...+..
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence            345677888999999999999877754332               12 47899999999999999999999988863221


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          482 --VKALYRRAQAYIQMADLDLAEFDIKKALEID--PD-NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       482 --~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                        ..+++.+|.++..+|++++|+.+|++++.-.  |. ..++...++.+..++.+.+++ ...|+++...
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~a~  237 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Confidence              4589999999999999999999999998644  55 556778888887777766544 3466666553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.32  E-value=8.3e-07  Score=86.99  Aligned_cols=113  Identities=12%  Similarity=-0.050  Sum_probs=88.8

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH------HHHHHHhcHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACK  458 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~~  458 (562)
                      .+..+...|..+.+.|++++|+..|++++...|.....             ..+....++.      -...+++++|.++
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            34567888889999999999999988887665421100             0001111111      1245689999999


Q ss_pred             hhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          459 LKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      ..+|++++|+..+.++++.+|++  ..++.+++.+|..+|+.++|...|++++.
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999998  89999999999999999999999999985

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.31  E-value=3.4e-06  Score=69.78  Aligned_cols=78  Identities=12%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       466 ~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      .|+..++++++.+|++..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.....+..++. ..|.+..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR-QAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999998887777665543 3444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.27  E-value=2.3e-06  Score=85.45  Aligned_cols=116  Identities=9%  Similarity=-0.126  Sum_probs=102.5

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-c-CHHHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-K-DYKQAEKLCTKVL  475 (562)
Q Consensus       399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~-~~~~A~~~~~~al  475 (562)
                      ...+..++..+...+ .+++|+..+.+++...|.+...               ++.++.+..++ + ++++++..|+++|
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a---------------W~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV---------------WHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            345778888888888 5999999999999988876544               88999999888 7 8999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLD--------LAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~--------~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      +.+|.|..||+.|+-++..++.++        ++++.+.++++++|.|-.++.....+...+
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999888        999999999999999998888877765443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.25  E-value=3.3e-06  Score=90.19  Aligned_cols=117  Identities=12%  Similarity=0.043  Sum_probs=72.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..+.+.|++++|...|++++.+.|.+..              .+|++++.++.++|++++|+..++++++..|
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            34566778888889999999999999987553210              1355556666666666666666666666655


Q ss_pred             CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          480 RNVKALYRRAQA-YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       480 ~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .+...+...+.. +..+|++++|+..|+++++++|++..++..+..+....+
T Consensus       388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred             CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence            555555544433 234566666666666666666666655555555544333

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.18  E-value=7.5e-06  Score=86.47  Aligned_cols=78  Identities=21%  Similarity=0.084  Sum_probs=68.2

Q ss_pred             HHHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CH
Q 008540          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD---NR  516 (562)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~---~~  516 (562)
                      ..+++++|.+|..    .+++++|+.+++++++.  .++.+++++|.+|..    .+++++|+.+|++|++++|+   +.
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  440 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE  440 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence            3468899999999    89999999999999986  478999999999999    89999999999999999954   77


Q ss_pred             HHHHHHHHHHH
Q 008540          517 DVKLEYKTLKE  527 (562)
Q Consensus       517 ~~~~~l~~l~~  527 (562)
                      .+...++.+..
T Consensus       441 ~a~~~l~~~~~  451 (490)
T 2xm6_A          441 NRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHTTSCH
T ss_pred             HHHHHHHhcCH
Confidence            77777766644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.17  E-value=5.8e-06  Score=87.07  Aligned_cols=113  Identities=12%  Similarity=0.015  Sum_probs=92.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+.+.|..|..+|+|++|+.+|++++.+........       +......++|+|.+|..+|+|++|+..+++||
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45677889999999999999999999999999876533221       12355668999999999999999999999999


Q ss_pred             hc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          476 DL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       476 ~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ++     -|++   .+.+-.++.++..++.|++|...|+++.+-.-+|
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            74     3555   5666789999999999999999999987544333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.16  E-value=1.2e-05  Score=67.13  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             HHhcHHHHHhhccC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      +.+|+|.|..+.++   ..++|..+...++.+|. ...++|.+|.+|+++|+|++|+.+++.+|+++|+|..+..+...+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            46688888888764   45799999999998884 588999999999999999999999999999999999998888877


Q ss_pred             HHHHHH
Q 008540          526 KEKMKE  531 (562)
Q Consensus       526 ~~~~~~  531 (562)
                      ..++.+
T Consensus       122 e~ki~k  127 (134)
T 3o48_A          122 EDKIQK  127 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.15  E-value=1.7e-05  Score=80.23  Aligned_cols=138  Identities=9%  Similarity=-0.044  Sum_probs=103.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+..+|..++..|+++.|+..+.+++...+...          ......+++++|.++...|++++|+..+.+++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34456677889999999999999999999998765321          11344568899999999999999999999999


Q ss_pred             hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDP--------DNRDVKLEYKTLKEKMKEYNKKEAKFYG  541 (562)
Q Consensus       476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p--------~~~~~~~~l~~l~~~~~~~~~~~~~~~~  541 (562)
                      .+.+..      ..+++++|.+|..+|++++|+..|++++.+.+        ....+...+..+.....+..+.. ..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~  159 (373)
T 1hz4_A           81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE-ASAR  159 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH-HHHH
Confidence            876533      34578999999999999999999999998752        22344555666655555554443 2444


Q ss_pred             hhc
Q 008540          542 NMF  544 (562)
Q Consensus       542 ~~f  544 (562)
                      +..
T Consensus       160 ~al  162 (373)
T 1hz4_A          160 SGI  162 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.14  E-value=5.7e-06  Score=88.34  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             HhhhHHHHHHHHH-------cCcHH-------HHHHHHHHHHH-HhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540          399 AGKKKEQGNTLFK-------AGKYA-------RASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (562)
Q Consensus       399 a~~~~~~G~~~~~-------~g~~~-------~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (562)
                      ...+...|..+.+       .|+++       .|+..|++|+. +.|...               .+++++|..+.++|+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~---------------~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------------LLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH---------------HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHhcCC
Confidence            3456677777775       68877       89999999997 666432               348899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          464 YKQAEKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      +++|+..|+++++..|.++ .+|...+.++..+|++++|++.|++|++..|.+..+.
T Consensus       337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~  393 (530)
T 2ooe_A          337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  393 (530)
T ss_dssp             HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred             HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence            9999999999999999985 6999999999999999999999999999988765443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.12  E-value=2.8e-05  Score=65.86  Aligned_cols=81  Identities=17%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             HHhcHHHHHhhccC---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      +.+|+|.|..+..+   -.+++..++..+..+| ....++|.+|.+|+++|+|++|+.+++.+|+.+|+|..+..+...+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            36688888888775   4579999999999888 4678999999999999999999999999999999999988887777


Q ss_pred             HHHHH
Q 008540          526 KEKMK  530 (562)
Q Consensus       526 ~~~~~  530 (562)
                      ..++.
T Consensus       121 e~~i~  125 (144)
T 1y8m_A          121 EDKIQ  125 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=98.11  E-value=2.3e-06  Score=88.39  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      .++.||.|+|+|+++ .||..|+++..  .++.|.+|.+.  + |+++|.||++|++++|.+..              +|
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG  213 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG  213 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence            578899999999998 49999998754  68889999887  4 99999999999999999854              35


Q ss_pred             CcEEEEEEEeEeeeccccccCcceeEee
Q 008540          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (562)
Q Consensus       132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i  159 (562)
                      .+..|.|.|.++.....+..|..+++.+
T Consensus       214 k~a~F~VtV~~Ik~~~lPEldDEfak~~  241 (433)
T 3gty_X          214 KKYTYKLEVEEVYKRTLPEIGDELAKSV  241 (433)
T ss_dssp             EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred             CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence            8999999999999877777777777754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.07  E-value=2.2e-05  Score=89.93  Aligned_cols=111  Identities=15%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-  479 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-  479 (562)
                      .+...|..++..|+|+.|+.+|.+|-.                       |..+|.|+.++|+|++|++.+++|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~n-----------------------y~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVSN-----------------------FGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhhH-----------------------HHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            456799999999999999999998631                       78899999999999999999999955433 


Q ss_pred             ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          480 ------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       480 ------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                                              .++..+..++..|..+|.|++|+..|++++.+++.+.....+|..+..+.+..+-
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence                                    1444566788889999999999999999999999999999999888776654443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.07  E-value=2.6e-05  Score=67.14  Aligned_cols=94  Identities=16%  Similarity=0.019  Sum_probs=81.3

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      .+++.+|+..|++|.+...  ...               .  +|.+|.....+++|+.+++++.+.  .++.+++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~a---------------~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MFG---------------C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTH---------------H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hhh---------------h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3578999999999997642  111               3  999999999999999999999987  789999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       492 ~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      |..    .+++++|+.+|++|.+.  .+..+...|..+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999    89999999999999987  678888888888765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.03  E-value=1.3e-05  Score=82.08  Aligned_cols=108  Identities=17%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-  479 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-  479 (562)
                      .+...|+.++..|+|+.|...|.++        +.               |.++|.|+.++|+|++|++.+.++.  +| 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            4555555555555555555555544        11               4455555555555555555555551  11 


Q ss_pred             --------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          480 --------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       480 --------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                                                .++.-+..+..+|.++|++++|+..|++++.+++.+..+..+|+.+..+.+..+
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k  258 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK  258 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH
Confidence                                      122223455678999999999999999999999999999999998877766544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.93  E-value=8.9e-05  Score=78.15  Aligned_cols=92  Identities=18%  Similarity=0.062  Sum_probs=46.1

Q ss_pred             hhhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh----ccCHHHHHHHH
Q 008540          400 GKKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLC  471 (562)
Q Consensus       400 ~~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~  471 (562)
                      ..+...|..++.    .+++++|+..|++|++...                 ..+++++|.+|..    .+++++|+.++
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  138 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-----------------PQAQQNLGVMYHEGNGVKVDKAESVKWF  138 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            345556666666    6666666666666665311                 1123444444444    44455555555


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008540          472 TKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALE  510 (562)
Q Consensus       472 ~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~  510 (562)
                      +++++.  +++.+++++|.+|..    .+++++|+.+|+++++
T Consensus       139 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~  179 (490)
T 2xm6_A          139 RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE  179 (490)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            544432  344444445544444    4444445444444444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.91  E-value=4.4e-05  Score=79.79  Aligned_cols=120  Identities=18%  Similarity=0.022  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHHH------HHHHHHhcHHHH
Q 008540          401 KKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAKA------LKVACNLNNAAC  457 (562)
Q Consensus       401 ~~~~~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~--------------~~~~~~~~~~------~~~~~~~nla~~  457 (562)
                      .+...|..+.+.|   ++.+|+..|++|++..+.....              ..+..+....      -...+++|+|.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4677888999999   9999999999998765433210              0000000111      112234555555


Q ss_pred             -H--hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          458 -K--LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----DLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       458 -~--~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-----~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                       +  ...+++++|+.+++++++.  .++.+++++|.+|. .|     ++++|+.+|++|.   +.+..+...|+.+.
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence             2  3455555555555555543  35555555555555 33     5556666665555   55555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.90  E-value=0.00024  Score=70.89  Aligned_cols=114  Identities=12%  Similarity=-0.015  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcCCC-----------------ChHHHHHHHHHH------------HH
Q 008540          402 KKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSF-----------------GDEEKKQAKALK------------VA  449 (562)
Q Consensus       402 ~~~~G~~~~~~---g~~~~A~~~y~~al~~~~~~~~~-----------------~~~~~~~~~~~~------------~~  449 (562)
                      +.-+|..++.+   ..+.+|+.+|++|+++.|.....                 .......+....            ..
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~  278 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI  278 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence            33445555544   45789999999999998864211                 111111111111            12


Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      +|.-+|..++..|++++|+..+++++.++| +.-+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            333466677788999999999999999996 477889999999999999999999999999999875

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.88  E-value=0.00012  Score=63.85  Aligned_cols=118  Identities=13%  Similarity=0.096  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-  478 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-  478 (562)
                      .+++....++..+.|+.|+-.+..++.+...+... +.       ..+..++.++|.+++..++|..|...|++||... 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999987665542 22       3455568899999999999999999999997643 


Q ss_pred             --CCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540          479 --SRN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (562)
Q Consensus       479 --p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  526 (562)
                        +.+                      ....|++|.||.+++++++|+..++..- ..-..+.+...|+++.
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence              111                      2577999999999999999999987531 1224556666666553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.88  E-value=6.1e-05  Score=77.53  Aligned_cols=120  Identities=14%  Similarity=0.146  Sum_probs=87.3

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------------ChHHH-HHHH-----------
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------------GDEEK-KQAK-----------  444 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------------~~~~~-~~~~-----------  444 (562)
                      .......+.+.|..|++.|+|++|+..|.+++.+.+.....                  ..+.. ....           
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            33445668899999999999999999999999876542210                  01110 0000           


Q ss_pred             -HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540          445 -ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (562)
Q Consensus       445 -~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~  514 (562)
                       ..+..++.++|.+|..+|+|.+|+..+++++..      .+....++...+.+|..+++|++|+..+++++.+.+.
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence             023456778889999999999999988888764      2334678888899999999999999999999888543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.85  E-value=0.0001  Score=63.79  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             hhhHHHHHHHHHcC---cHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          400 GKKKEQGNTLFKAG---KYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       400 ~~~~~~G~~~~~~g---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      +...+.|..+.+.+   ++++|+..++..++.. |.              .+..+++|+|..|+++++|.+|+++|+++|
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL   98 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   98 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55677888888877   7889999999988865 31              234568999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHH
Q 008540          476 DLDSRNVKALYRRAQA  491 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a  491 (562)
                      +++|+|..|..-+-.+
T Consensus        99 ~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           99 QTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHCTTCHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHH
Confidence            9999999887765443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.83  E-value=3e-05  Score=74.27  Aligned_cols=88  Identities=15%  Similarity=-0.001  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----cCHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 008540          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----KDYKQAEKLCTKVLDLDSRN-VKALYRR  488 (562)
Q Consensus       415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~~~~~A~~~~~~al~~~p~~-~ka~~~~  488 (562)
                      ...|...+++|+++.|..             ..-.+|..+|..|.+.     |+.++|.++++++|+++|+. ..+++..
T Consensus       179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y  245 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            567777788888877752             1334588899999996     99999999999999999975 9999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008540          489 AQAYIQM-ADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       489 a~a~~~l-~~~~~A~~~~~~al~l~p~~  515 (562)
                      |..|+.. +++++|...|++|+..+|..
T Consensus       246 A~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          246 ADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999884 99999999999999988773

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.76  E-value=0.00011  Score=76.65  Aligned_cols=75  Identities=20%  Similarity=0.076  Sum_probs=64.1

Q ss_pred             HHHHhcHHHHHhhcc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 008540          448 VACNLNNAACKLKLK-----DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDV  518 (562)
Q Consensus       448 ~~~~~nla~~~~k~~-----~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~  518 (562)
                      ..+++|+|.+|. .|     ++++|+.+++++.   +.++.+++++|.+|..    ..++++|+.+|++|.+.  .+..+
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A  356 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA  356 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence            345889999998 55     9999999999999   8999999999999988    45999999999999875  45567


Q ss_pred             HHHHHHHHHH
Q 008540          519 KLEYKTLKEK  528 (562)
Q Consensus       519 ~~~l~~l~~~  528 (562)
                      ...|+.+...
T Consensus       357 ~~~Lg~~y~~  366 (452)
T 3e4b_A          357 DFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHh
Confidence            8888877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=7.3e-05  Score=76.94  Aligned_cols=101  Identities=11%  Similarity=0.027  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+...|..++..|+|.+|+..+.+++.........         .....++++++.+|..+++|.+|...+++++...+.
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            34567888888888888888888888777654432         456678999999999999999999999999987654


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  510 (562)
                      ........+..+..+|.+..+...|..|..
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          208 IYCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            434455667777777777666667776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.73  E-value=0.00014  Score=83.57  Aligned_cols=107  Identities=12%  Similarity=-0.043  Sum_probs=82.3

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC--hHHHHHHHH-----HHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKA-----LKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~-----~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      +.|..+...|.|++|+..|+++-.........-  -..+++..+     ....+|+++|.++.+.|+|++|+..|.++  
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            348999999999999999999753322100000  011111111     23567999999999999999999999886  


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                         +++.+|++.|.++.++|+|++|+++|.+|.+.+++.
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence               788999999999999999999999999999988553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.60  E-value=0.00013  Score=71.44  Aligned_cols=100  Identities=12%  Similarity=0.018  Sum_probs=79.4

Q ss_pred             HHHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc----
Q 008540          404 EQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL----  477 (562)
Q Consensus       404 ~~G~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~----  477 (562)
                      ..+...+..|  +++.|...|+++....|..             ....+++|   |++++|+|++|...++.+++.    
T Consensus       181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~-------------~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~  244 (310)
T 3mv2_B          181 AESYIKFATNKETATSNFYYYEELSQTFPTW-------------KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV  244 (310)
T ss_dssp             HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH-------------HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhCCCc-------------ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence            3444455555  8999999999987655420             01112344   899999999999999988876    


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          478 ------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       478 ------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                            +|+|+.++.++..+...+|+  +|.+.+.++.+++|+++-+...
T Consensus       245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence                  58999999999999999998  8999999999999999865443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.39  E-value=0.0005  Score=67.25  Aligned_cols=122  Identities=7%  Similarity=-0.033  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-  480 (562)
                      +.-.|..++..|++++|++.+.+++...+..  .           ...++.-++.+++++|+.+.|.+.+++..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~-----------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE--G-----------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--T-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--C-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            3578888999999999999999987654410  0           2334667888999999999999999999888883 


Q ss_pred             ---CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540          481 ---NVKALYRRAQA--YIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (562)
Q Consensus       481 ---~~ka~~~~a~a--~~~l~--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  537 (562)
                         +-..+..++.+  .+..|  ++.+|...|+.+....|+......++. +...+++..++++
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence               23445555544  66556  899999999998887776333344444 6666666665554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.30  E-value=0.00037  Score=55.28  Aligned_cols=68  Identities=19%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      +..+...|..++..++   ..+|...+++|+.+.|.+...               ++.+|..+++.|+|++|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA---------------~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAA---------------LSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456678888876555   799999999999999976543               7789999999999999999999999


Q ss_pred             hcCCCC
Q 008540          476 DLDSRN  481 (562)
Q Consensus       476 ~~~p~~  481 (562)
                      +.+|..
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999974

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.29  E-value=0.0033  Score=63.96  Aligned_cols=127  Identities=13%  Similarity=0.047  Sum_probs=101.9

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~  470 (562)
                      ....+...|......++...|...+.+|+.+..-..       .+...+...+.+.+..+...++.+++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            345566677777788999999999999999864321       1223455677888888889999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHH
Q 008540          471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE-------IDPDNRDVKLEYKTL  525 (562)
Q Consensus       471 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~-------l~p~~~~~~~~l~~l  525 (562)
                      +..++..+|-+..+|..+-.||...|+..+|++.|+++..       ++|. ++.+..+..+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-~~l~~l~~~i  254 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERI  254 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence            9999999999999999999999999999999999988754       3565 3444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.27  E-value=0.00089  Score=69.18  Aligned_cols=93  Identities=9%  Similarity=-0.039  Sum_probs=72.4

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+.+.|..|..+|+|++|+.+|++++.+........       +......++|+|.+|..+|+|++|+..+++|+
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999876533221       12355668999999999999999999999999


Q ss_pred             hc-----CCCC---HHHHHHHHHHHHHc
Q 008540          476 DL-----DSRN---VKALYRRAQAYIQM  495 (562)
Q Consensus       476 ~~-----~p~~---~ka~~~~a~a~~~l  495 (562)
                      ++     -|++   ...+.+++.|+..+
T Consensus       399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          399 DIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            75     3555   34555666666544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.23  E-value=0.00071  Score=64.81  Aligned_cols=65  Identities=11%  Similarity=0.054  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 008540          463 DYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQM-----ADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKE  527 (562)
Q Consensus       463 ~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l-----~~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~  527 (562)
                      ....|....++|+++||+  +..+|..+|..|..+     |+.++|++.|++|++++|+. ..+.-.++...-
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            578899999999999999  677999999999996     99999999999999999975 777777776543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.13  E-value=0.0013  Score=67.95  Aligned_cols=80  Identities=11%  Similarity=-0.013  Sum_probs=64.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+.+.|..|..+|+|++|+.+|++++.+........       +......++|+|.+|..+|+|++|+..+++||
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34567788999999999999999999999999876533221       12345568999999999999999999999999


Q ss_pred             hc-----CCCCH
Q 008540          476 DL-----DSRNV  482 (562)
Q Consensus       476 ~~-----~p~~~  482 (562)
                      ++     -|+++
T Consensus       410 ~i~~~~lG~~Hp  421 (433)
T 3qww_A          410 AIMEVAHGKDHP  421 (433)
T ss_dssp             HHHHHHTCTTCH
T ss_pred             HHHHHHcCCCCh
Confidence            85     35654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.89  E-value=0.0056  Score=50.89  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=38.9

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a  491 (562)
                      +-.+++.+|..++|+|+|..|+.+|+.+|+.+|+|.+|.--+..+
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            445688999999999999999999999999999998887655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.80  E-value=0.012  Score=49.17  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             HHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          403 KEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       403 ~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      .+.+..+.+..+   ..+++..++..++..+              ..+-.+++.+|..++|+|+|..|+.+|+.+|+.+|
T Consensus        44 F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--------------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP  109 (134)
T 3o48_A           44 FNYAWGLIKSTDVNDERLGVKILTDIYKEAE--------------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  109 (134)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--------------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--------------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            344555555443   4566666666555322              12445688999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 008540          480 RNVKALYRRAQA  491 (562)
Q Consensus       480 ~~~ka~~~~a~a  491 (562)
                      +|.+|.--+..+
T Consensus       110 ~N~QA~~Lk~~I  121 (134)
T 3o48_A          110 NNKQVGALKSMV  121 (134)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            998887655444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.79  E-value=0.017  Score=48.76  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          402 KKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       402 ~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ..+.+..+.+..+   ..+++..++..++..+   .           .+-.|++.+|..++|+++|..|..+|+.+|+.+
T Consensus        42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---~-----------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---S-----------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---S-----------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---c-----------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            3444555665543   4566666666655322   1           144568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHH
Q 008540          479 SRNVKALYRRAQ  490 (562)
Q Consensus       479 p~~~ka~~~~a~  490 (562)
                      |+|.+|.--+..
T Consensus       108 P~n~QA~~Lk~~  119 (144)
T 1y8m_A          108 RNNKQVGALKSM  119 (144)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            999887665443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.74  E-value=0.0038  Score=63.90  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHH------HHHHHHhcHHHHHhh
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKA------LKVACNLNNAACKLK  460 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~~~~~~~~~------~~~~~~~nla~~~~k  460 (562)
                      ..-...+..+...|.++++.|+|+.|++.|.+|........      ...  ++.....      ....-...+..+|.+
T Consensus       142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~--ef~lA~~~~l~L~~~ad~l~~lv~~Yek  219 (449)
T 1b89_A          142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK--EFRLAQMCGLHIVVHADELEELINYYQD  219 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC--cHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence            34456677889999999999999999999999942210000      000  0000000      000012235678999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHH
Q 008540          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM--ADLDLAEFDIKKALEIDP-----DNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l--~~~~~A~~~~~~al~l~p-----~~~~~~~~l~~l~~~~~~~~  533 (562)
                      .|+|++|+..++++|.+++.+..++..+|.+|.+-  ++..++++.|...+.+.|     ++...+.++.-+.-...+.+
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            99999999999999999999999999999888774  577788888877777777     66667777777776666665


Q ss_pred             HH
Q 008540          534 KK  535 (562)
Q Consensus       534 ~~  535 (562)
                      .+
T Consensus       300 ~A  301 (449)
T 1b89_A          300 NA  301 (449)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.51  E-value=0.054  Score=59.11  Aligned_cols=145  Identities=10%  Similarity=0.030  Sum_probs=93.2

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+....+.|+++.|...|++++..++..       .+.+++....+..-...+|...+.+..+.+..+.|...+.+|+
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345555667889999999999999875311       1111122222222333456666777777788888888888888


Q ss_pred             hc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540          476 DL-DSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT  548 (562)
Q Consensus       476 ~~-~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~  548 (562)
                      +. .+...+.|...|..-...++ ++.|+..|+++++..|++...+..+..+....++. .+.+.+|.+......
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~  535 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKIS  535 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSS
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcC
Confidence            76 44456666666666666544 78888888888888888877776666554444332 344556666655543

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.31  E-value=0.0067  Score=62.39  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      .+..||.|+++|.+.. +|..|+++  .++.+.+|.+.  + |+++|.||+.|+...|.+    .|              
T Consensus       154 ~a~~gD~V~id~~~~~-dG~~~~~~~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~v----tF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN-EEGKKLTSREYEYVISEDEDR--P-FVKDLVGKKKGDVVEIER----EY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEEC-TTSCEEEEEEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEE----EE--------------
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEE----ee--------------
Confidence            4668999999999884 88888865  56667778776  4 999999999999999998    33              


Q ss_pred             CCCCeEEEEEEeecccc
Q 008540          246 PPNATLQIALELVSWKT  262 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (562)
                       +|.+..|.|.+..+..
T Consensus       212 -aGk~a~F~VtV~~Ik~  227 (433)
T 3gty_X          212 -EGKKYTYKLEVEEVYK  227 (433)
T ss_dssp             -TTEEEEEEEEEEEEEE
T ss_pred             -CCCeEEEEEEEEEEEE
Confidence             3457889999988754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.30  E-value=0.016  Score=50.38  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-------H-HHH-H-HHHHHHHHHhcHHHHHhhccCHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------E-EKK-Q-AKALKVACNLNNAACKLKLKDYKQA  467 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------~-~~~-~-~~~~~~~~~~nla~~~~k~~~~~~A  467 (562)
                      .++.+...|+.+|.+++|.+|...|++||...........       + ... . ....-..+.+.+|.||.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            3566788999999999999999999999987653211100       0 000 0 0000123467799999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540          468 EKLCTKVLDLDSRNVKALYRRAQAY  492 (562)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~a~a~  492 (562)
                      +...+.+-. ...+++.-.-+|+.|
T Consensus       142 i~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            998765422 234567777777655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.22  E-value=0.018  Score=62.95  Aligned_cols=134  Identities=16%  Similarity=0.079  Sum_probs=95.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p  479 (562)
                      .+...++...+.++.+.|...|.+|++..+... .             .+|...|....+.+ +++.|...|+++|+..|
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~-------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-P-------------DIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-T-------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-h-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence            345555555667889999999999998733221 1             12445555555654 59999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE  549 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~  549 (562)
                      +++..+...+.....+|+.+.|+..|++|+...|+   ...++..+........... ..+++++++.....+
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~-~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN-SVRTLEKRFFEKFPE  573 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHSTT
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCC
Confidence            99998888888888999999999999999999884   3455555555544444332 234566666655543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.88  E-value=0.054  Score=53.92  Aligned_cols=123  Identities=10%  Similarity=-0.005  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCCChHHHHHHHH----------HHHHHHhcHHHHHhhccCH-----------HHHHHHHHHH
Q 008540          416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKA----------LKVACNLNNAACKLKLKDY-----------KQAEKLCTKV  474 (562)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~----------~~~~~~~nla~~~~k~~~~-----------~~A~~~~~~a  474 (562)
                      -.|..+|-+|..++....   .+...+...          -...++..++.||.-+..+           ..|+. ...+
T Consensus       194 ~~Aydl~Lra~~~l~~~~---~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a  269 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGD---DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVT  269 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHT
T ss_pred             HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHh
Confidence            467788888877665421   122122111          1234556667777532211           12222 1123


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      +..+|.++.+|..+|.++...|++++|+..+++|+.++|+ ......++.+.....+.+++.. .|.+.|
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e-~~~~Al  337 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD-AYLTAF  337 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence            4667889999999999999999999999999999999975 5566777888777766665543 344433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.067  Score=58.56  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      ++.-.|..++..++|+.|+..+++|...-|.....|+++|.||..+++|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44455777788999999999999999999999999999999999999999999888776

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.67  E-value=0.17  Score=43.15  Aligned_cols=94  Identities=12%  Similarity=0.019  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008540          416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM  495 (562)
Q Consensus       416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l  495 (562)
                      ++-+..|++|+...|.....       ...-.+.++.+.|.. ...++.++|.+.|+.++.++....+.|.-.|+--...
T Consensus        36 ~rlrd~YerAia~~Pp~k~~-------~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq  107 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYG-------QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ  107 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGT-------TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCccccc-------cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            77789999999988865311       112233445556644 5679999999999999998888888888889888999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH
Q 008540          496 ADLDLAEFDIKKALEIDPDNRD  517 (562)
Q Consensus       496 ~~~~~A~~~~~~al~l~p~~~~  517 (562)
                      |++..|++.+.+|+.+.|...+
T Consensus       108 gnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A          108 GNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             TCHHHHHHHHHHHHHTTCBCHH
T ss_pred             ccHHHHHHHHHHHhccCCCcHH
Confidence            9999999999999999998754

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=95.22  E-value=0.13  Score=49.70  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH----HHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----KQAEKLCTKV  474 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----~~A~~~~~~a  474 (562)
                      .....+.|-.++..|+|.+|+..|+.+|..++-....+.++.++++++...|...+-.+-+.+.+-    +...+.++-+
T Consensus       114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            333566899999999999999999999999987766667777788777776665554444333221    1112222222


Q ss_pred             -----HhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       475 -----l~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                           .++.|.+.---.|.| ...++.++|-.|....++.|++.|..+
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence                 233444433333443 456788999999999999999999754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.73  E-value=0.28  Score=49.40  Aligned_cols=98  Identities=15%  Similarity=0.061  Sum_probs=79.4

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-----
Q 008540          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-----  478 (562)
Q Consensus       404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-----  478 (562)
                      ..|..|+..|+|.+|+..+.+.++.+.....         ......++......|..++++.++...+.+|....     
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            7889999999999999999999998875332         25567778889999999999999999999986542     


Q ss_pred             CCCHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008540          479 SRNVKA--LYRRAQAYI-QMADLDLAEFDIKKALE  510 (562)
Q Consensus       479 p~~~ka--~~~~a~a~~-~l~~~~~A~~~~~~al~  510 (562)
                      |....+  ..--|..|+ ..++|..|-.+|-.+++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            222333  345688999 89999999999998874

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=94.64  E-value=1.9  Score=41.59  Aligned_cols=114  Identities=16%  Similarity=0.285  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--cC-----HHHHHHHHHHH
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KD-----YKQAEKLCTKV  474 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~-----~~~A~~~~~~a  474 (562)
                      ..+.|-.++..|+|.+|+..|+.+|..++-....+.++..+++++...|...+-.+-+.+  +.     .+...+.++-+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            467899999999999999999999999988776677788888888777665554443333  22     12333333333


Q ss_pred             -----HhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       475 -----l~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                           .++.|.|.---.|.| ...++.++|-.|....++.|++.|..
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  231 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP  231 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence                 233454433333444 45677899999999999999998863

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.63  E-value=0.39  Score=41.61  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh--c---
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--L---  477 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--~---  477 (562)
                      .-.+..+|-.|+|.+|+-...       ....             ....+..++||.++++|..|+...+..|+  .   
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~-------~lNT-------------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d   96 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLH-------KLNT-------------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERD   96 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-------TCCB-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCC
T ss_pred             hhhhhhhhhcchHhHHHHHHH-------hcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            345667777787776665442       2111             12255789999999999999999999993  2   


Q ss_pred             ------------CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          478 ------------DSRNVKALY-RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       478 ------------~p~~~ka~~-~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                                  ||.+...++ -+|..+.++|+-++|+.++.+....+|-.+.+.
T Consensus        97 ~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           97 PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                        233433333 569999999999999999999999888765544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.52  E-value=0.55  Score=49.07  Aligned_cols=121  Identities=14%  Similarity=0.020  Sum_probs=82.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh---------HHHHHHH----------------HHHHHHHhcH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---------EEKKQAK----------------ALKVACNLNN  454 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~---------~~~~~~~----------------~~~~~~~~nl  454 (562)
                      ..+...+..+.+.|+.+.|...|.+|+.. |.+...+-         +....+.                .....+|...
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            34556677777889999999999999999 75432110         0000000                1122456666


Q ss_pred             HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540          455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEY  522 (562)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~p~~~~~~~~l  522 (562)
                      +....+.+..+.|...+.+| ...+.....|...|..-..++ +.+.|+..|+++++..|+++..+..+
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y  360 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF  360 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            77777788999999999999 433334566666666666566 69999999999999989887654443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.51  E-value=0.27  Score=46.31  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ...++.+..++|+..+...++.+|.|.+....+-+.++-.|+|+.|...++.+.+++|+.......++.+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999987666555544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.84  E-value=0.18  Score=51.78  Aligned_cols=99  Identities=12%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC--
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--  478 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--  478 (562)
                      .+...|..+++.|++..|++.|.++.........            ++.++++...+++..++|..|..+++++..+-  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            4678999999999999999999998887654321            45567788889999999999999999986542  


Q ss_pred             -CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          479 -SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       479 -p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                       ++.   .+.....|.+++..++|..|-..|..++.-
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence             221   234456688888999999999999887654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.88  E-value=0.48  Score=49.36  Aligned_cols=81  Identities=12%  Similarity=0.010  Sum_probs=72.0

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      ..++.++|........+..|..+|.+|+.+.|++-..|..+|..+...++.-+|.-+|-+++......+.++..|..+-.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            44677888888888899999999999999999999999999999999999999999999999887778888888876654


Q ss_pred             H
Q 008540          528 K  528 (562)
Q Consensus       528 ~  528 (562)
                      +
T Consensus       232 ~  232 (497)
T 1ya0_A          232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.84  E-value=0.47  Score=49.58  Aligned_cols=128  Identities=8%  Similarity=-0.065  Sum_probs=89.9

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p  479 (562)
                      .+...+....+.+..+.|...|.+| + .+.   .+.           .+|...|......+ +.+.|...++.+++..|
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~~-----------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-G-NEG---VGP-----------HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CCH-----------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CCh-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            3455555555677899999999999 3 221   111           12444555555555 69999999999999989


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE  549 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~  549 (562)
                      +++..+...+.....+|+.+.|+..|+++    +....++..+.......... ..-++++.++...+.+
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~-~~~r~v~~~~~~~~~~  416 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSM-ELFRELVDQKMDAIKA  416 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhcc
Confidence            98887777788788899999999999998    34566666666666555543 3344567777766653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.24  E-value=1.5  Score=43.99  Aligned_cols=132  Identities=13%  Similarity=0.037  Sum_probs=89.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh-------------------hhcCCCChHH---------HH---HHHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI-------------------EYDTSFGDEE---------KK---QAKALKV  448 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~-------------------~~~~~~~~~~---------~~---~~~~~~~  448 (562)
                      ....+.|..|.+.|++++-.........++                   ...+...+..         |.   ....++.
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999877766664443332                   2222111111         11   1122344


Q ss_pred             HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH
Q 008540          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEID---PDNRDVK  519 (562)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---p~~~~~~  519 (562)
                      .+-..+|..|+..|+|.+|+..+.++++....      -...+....+.|..++++.+|.+.|.+|....   +.++.+.
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            45568999999999999999999998774221      25677788999999999999999999998653   3556666


Q ss_pred             HHHHHHHHHHHH
Q 008540          520 LEYKTLKEKMKE  531 (562)
Q Consensus       520 ~~l~~l~~~~~~  531 (562)
                      ..+..+.-.+..
T Consensus       180 a~i~~~~Gi~~l  191 (394)
T 3txn_A          180 GALDLQSGILHA  191 (394)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHH
Confidence            666655544444

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.42  E-value=0.57  Score=35.68  Aligned_cols=41  Identities=22%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             ChHH-HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          391 NTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       391 ~~~e-~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      +..+ .++.|..+..+|..+=+.|+|.+|+.+|.+|++++-.
T Consensus         2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4445 6678889999999999999999999999999997653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.27  E-value=4.9  Score=41.14  Aligned_cols=105  Identities=14%  Similarity=0.063  Sum_probs=76.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh-
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-  476 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~-  476 (562)
                      .+.-....+..++..|+|.+|.........-.-.  ...       +..++.+++.....|+..++|.+|...++++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--ccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3444567889999999999999998876643221  111       234555677788889999999999999999742 


Q ss_pred             --cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          477 --LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       477 --~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                        -.+.+    .+.+...|..|...++|.+|-.+|..++..
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              22222    344556789999999999999999888753

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=89.09  E-value=1.1  Score=36.55  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=37.4

Q ss_pred             ccCChH-HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          388 WDMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       388 ~~~~~~-e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      .+|+.. +.++.|..+..+|...=+.++|.+|+.+|..|++++-.
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            345555 67788889999999999999999999999999998654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.00  E-value=1.7  Score=40.88  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=51.1

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (562)
Q Consensus       406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (562)
                      ...+++.+..+.|+......++..|.+...               ...+...+.-.|+|+.|...++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~---------------R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            356889999999999999999988866532               334555666789999999999999999998744

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.81  E-value=0.43  Score=52.24  Aligned_cols=60  Identities=20%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      .-+..++..+..+|+|+.|+..-++|+...|.+...               |..||.||.++++|+.|+-..+-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~t---------------W~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFES---------------WYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHH---------------HHHHHHHHHHhccHHHHHHHHhcC
Confidence            356778888999999999999999999999876543               889999999999999999887776

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.14  E-value=3.1  Score=43.35  Aligned_cols=102  Identities=5%  Similarity=-0.037  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-C
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-S  479 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-p  479 (562)
                      .+...-..+.+.|+++.|.+.|++..+.-- .+             ....|+.+-.+|.+.|++++|...+++..+.. .
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~P-------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QP-------------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-------------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            345566778899999999999988765311 01             12236777788899999999999999987753 2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNR  516 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~p~~~  516 (562)
                      -+...|..+-.+|.+.|++++|.+.|++..+.  .|+..
T Consensus       173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          173 PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            35678888999999999999999999987654  56543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.61  E-value=2.6  Score=37.09  Aligned_cols=82  Identities=7%  Similarity=-0.077  Sum_probs=49.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ...++..|...+++|+++-|.++|.++-++                       ..+...|.-.|+-+.-....+.+....
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------------------~~L~~Ly~~tg~~e~L~kla~iA~~~g   90 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHSF-----------------------DKLSFLYLVTGDVNKLSKMQNIAQTRE   90 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------------HHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence            346788888888888888888888765432                       234444445555554444444443322


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      .     +.....+++.+|+++++++.|.+.
T Consensus        91 ~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           91 D-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            1     223345677778888877777543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=85.87  E-value=2.5  Score=43.92  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=70.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ...+...|...-.+..+..|...|.+|+.+.|.....               |+-+|.+....+++-+|+-+|-++|...
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~---------------~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP---------------YNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCch---------------HHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            3467788999888999999999999999999987755               8889999999999999999999999887


Q ss_pred             CCCHHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYIQ  494 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~  494 (562)
                      ...+.|.-++...+.+
T Consensus       217 ~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          217 FPFPAASTNLQKALSK  232 (497)
T ss_dssp             BCCHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHH
Confidence            7778888877777665

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.48  E-value=4.9  Score=32.33  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=58.3

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (562)
                      .....|-.+.++|-..=..|+-+.|+.+|++++..+..-       +....+.|+..+.+..+...||..+..+++....
T Consensus        17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~   96 (116)
T 2dl1_A           17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK   96 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445667778888888888899999999999999987642       1244678999999999999999998887775554


Q ss_pred             H
Q 008540          467 A  467 (562)
Q Consensus       467 A  467 (562)
                      .
T Consensus        97 ~   97 (116)
T 2dl1_A           97 G   97 (116)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=85.17  E-value=1.7  Score=33.03  Aligned_cols=43  Identities=23%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             cCChH-HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          389 DMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       389 ~~~~~-e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      .|++. ..++.|..+..+|..+=+.|+|++|+.+|.+|++.+..
T Consensus         8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34443 45688889999999999999999999999999997653

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=83.97  E-value=2.5  Score=32.19  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      |+..+.++.|..+..+|...=+.|+|++|+.+|..|++++-.
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            343345677888899999999999999999999999997654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=83.66  E-value=4.3  Score=31.49  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      .++.|..+..+|..+-+.|+|++|+.+|..|++++-.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3457788889999999999999999999999998764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.97  E-value=1.7  Score=45.09  Aligned_cols=69  Identities=14%  Similarity=0.029  Sum_probs=56.6

Q ss_pred             HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ...+++-+-..|+..+.|++|....+++.--..  .|   ...+|..|+++...++|.+|.++|..|+...|.+
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            344566677889999999999999999953322  11   6778889999999999999999999999988765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=82.63  E-value=7.5  Score=40.41  Aligned_cols=74  Identities=14%  Similarity=0.072  Sum_probs=59.4

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNRDVKLEYK  523 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~p~~~~~~~~l~  523 (562)
                      .|+.+-.+|.+.|++++|+..+++..+.. .-+...|..+-.+|.+.|++++|.+.|+...+.  .|+.......+.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            47788889999999999999999987653 236788888999999999999999999988764  566554444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=82.25  E-value=3.9  Score=41.04  Aligned_cols=78  Identities=13%  Similarity=-0.028  Sum_probs=58.7

Q ss_pred             HHHHHhhccCHHHHHHHHHHHHhcCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          454 NAACKLKLKDYKQAEKLCTKVLDLDSR----------N------------VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~----------~------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      .|......++...|...+.+||.+...          .            ..++..++.+++.+|++.+|+..+.+++..
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~  200 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE  200 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344444567888999999999886421          1            235557889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 008540          512 DPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       512 ~p~~~~~~~~l~~l~~~~~~  531 (562)
                      +|-+..+...+-.+..+..+
T Consensus       201 ~P~~E~~~~~lm~al~~~Gr  220 (388)
T 2ff4_A          201 HPYREPLWTQLITAYYLSDR  220 (388)
T ss_dssp             STTCHHHHHHHHHHHHTTTC
T ss_pred             CCCCHHHHHHHHHHHHHcCC
Confidence            99998877777665444433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=81.81  E-value=3.6  Score=45.20  Aligned_cols=24  Identities=17%  Similarity=0.043  Sum_probs=17.6

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      |.++|..+++.++++.|+.+|.++
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            667777777777777777777765

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=81.37  E-value=5.8  Score=30.21  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      ..|..+..+|..+-+.|+|++|+.+|..|++++-.
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35667788888999999999999999999998654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.07  E-value=3.8  Score=47.48  Aligned_cols=106  Identities=10%  Similarity=0.005  Sum_probs=73.1

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh--HHHHHHH------HHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAK------ALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--~~~~~~~------~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      .-+|..++..|++++|..+|.+|-.-+........  .....+.      ......|+..+..+-+.+.++.+++.+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55788999999999999999988644322221111  1111110      012234566777888899999999999999


Q ss_pred             HhcCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540          475 LDLDSRN-V----KALYRRAQAYIQMADLDLAEFDIKKA  508 (562)
Q Consensus       475 l~~~p~~-~----ka~~~~a~a~~~l~~~~~A~~~~~~a  508 (562)
                      |+..+.+ .    ..|.++=++++.+++|++|-..+...
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9865433 2    25778899999999999997777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	562
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-35
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-19
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	3e-18
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-33
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-32
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-15
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	6e-32
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-19
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-17
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-30
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	5e-22
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-19
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-29
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	3e-14
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	5e-14
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	3e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	7e-16
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	7e-29
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-18
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-14
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-26
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	9e-21
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	8e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-25
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	6e-12
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	7e-23
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	5e-11
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-10
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	9e-22
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-11
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-18
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	1e-17
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	8e-05
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.001
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	8e-17
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	4e-06
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.004
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-05
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-04

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  127 bits (320), Expect = 1e-35
 Identities = 62/111 (55%), Positives = 78/111 (70%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIK
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           GWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS--RDRGDQFSFNLGRGNVI 66

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  +
Sbjct: 67  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G     +             G+   
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TM KGE     ++  YG+G+      G+   +P  ATL   +EL  W 
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDA-----GSPPKIPGGATLIFEVELFEWS 117

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  123 bits (309), Expect = 1e-33
 Identities = 67/165 (40%), Positives = 105/165 (63%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
           KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K ++
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
           +  +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A+ D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 505 IKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549
            +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K  E
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAE 165

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  117 bits (294), Expect = 4e-32
 Identities = 58/108 (53%), Positives = 74/108 (68%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL +
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D+ V+K + + G G E P  G  V V   GKL +G  F      +  + F F   + QV
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS--HDRNEPFVFSIGKGQV 59

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           I   D  V TMKK E+  L   PEYA+G+  S      +P N+T+ +EVEL+ F+
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP---KIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 69.8 bits (170), Expect = 3e-15
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D V V+Y  +L +G        + +   F++  G    
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G         +P NATL   +EL+ +K
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGS-----LPKIPSNATLFFEVELLDFK 111

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 6e-32
 Identities = 63/109 (57%), Positives = 74/109 (67%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            ++G+ K + +EG G + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            WDI I TMK GE    T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDS--SLDRKDKFSFDLGKGEVI 67

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E
Sbjct: 68  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 1e-17
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG     +   +         G    
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
               A+ TMK GE   +  KP+Y +G       G+   +PPNATL   +EL  +K
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSA-----GSPPKIPPNATLVFEVELFEFK 118

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  113 bits (284), Expect = 1e-30
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 31  EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG 90
           E  + + G+ ++  + GEG+  P  G  V++H  G    G  FD      T  +      
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGEDHD- 59

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
            +  G D  ++ M++ E  +  + P   +GE+G P   I PNA L ++V L S+
Sbjct: 60  -IPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 89.0 bits (220), Expect = 5e-22
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 265 EITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           ++ +D  +I++  + G+G+  PNEGA V++ L G+        +     +      + ++
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGG-----RVFDCRDVAFTVGEGED 57

Query: 325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK
Sbjct: 58  HDIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 82.4 bits (203), Expect = 1e-19
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKDGHFC 205
           +D+ +DGGII++  + GE + NP +   V ++ E R    +   +         +D    
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIP 61

Query: 206 PTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
             + KA++ M++ E+ +L + P+YGFGE GK     +  + PNA L   + L S++
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFE 113

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (275), Expect = 1e-29
 Identities = 56/110 (50%), Positives = 70/110 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL 
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G        +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-----GLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (161), Expect = 5e-14
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           SE+ +   V    +  GDG   P  G +V +   G L++G  F      +    F+    
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS--VDRGSPFQCNIG 57

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-29
 Identities = 66/168 (39%), Positives = 109/168 (64%)

Query: 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
           SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE ++A+AL
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
           ++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +LA  D +
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           K L++ P+N+  K +    +++++    +E K Y NMF ++ E +   
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKA 168

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 7e-16
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
           V  + +  GDG   P  G    V   G L+DG  F         + F+F   +++VI G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGW 59

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG     +       +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G       G+ G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGAT-----GHPGIIPPHATLVFDVELLKLE 107

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 7e-29
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 8/113 (7%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQG 90
              K ++K+G+  + P+ GD V   YTGTL DGT FD++          + P  F +G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLS 142
            VI+GWD  + TM KGE A   I PE AYG+ G P   IPPNA L F+VEL+ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 2e-18
 Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE-----QLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF     +  +     +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-----------MVVGKADGVEFTVKDG 202
              K +LK+G+K   PK  D V   Y   L+DG                A  + F V  G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
                  +A+ TM KGEK  L ++P++ +G+KG+     +  +PPNA L   +ELV 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELVD 114

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-26
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E  + G+ +++   GEG+  P  G  VEV   G   D                     ++
Sbjct: 4   EEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF---EIGEGENLDL 60

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVKD 148
             G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 9e-21
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 7/120 (5%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++I   G+G+ +PNEGA+V+V L G  +D     ++   E  +          
Sbjct: 5   EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENL-----D 59

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           +  GL+RA+  M+K E +++ + P YAFG     +E   +PPN+ + YE+ L SFEK KE
Sbjct: 60  LPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 8e-16
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-MVVGKADGVEFTVKDGHFCPTLA 209
           +DGGII++I   GE +  P +   V V  E   +D      +        ++      L 
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE 65

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   E
Sbjct: 66  RAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 117

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (253), Expect = 2e-25
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           + GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI G
Sbjct: 106 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPG 162

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W  G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL  
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (154), Expect = 4e-12
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF 320
           K     T    ++ ++++ G G E P +   V V   G L DG  F       E      
Sbjct: 98  KEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEP----L 152

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
               + VI G    +  +KK     L I PE A+G A        +PPNST+ ++VEL+ 
Sbjct: 153 SFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLD 208

Query: 381 FE 382
            +
Sbjct: 209 VK 210

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 56.8 bits (136), Expect = 7e-10
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
           E PKD D V+VNY+  L DG     +   G   + +     P   + +K +KKG K+ L 
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 179

Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 180 IPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 210

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 96.6 bits (239), Expect = 4e-24
 Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQ 442
           +K  +D   EEK+++A   KE+GN  FK  +   A  +Y++A+ +  +   + D+    +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
            K ++++CNLN A C  K KDY +A    +KVL +D  NVKALY+   A +    L+ A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
            ++ KA  ++P+N D++  Y+    K+KE  K
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 97.6 bits (242), Expect = 5e-24
 Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
             GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F      VI G
Sbjct: 97  PSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPG 153

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W   ++ M  G      +P  LAYG       I PN TL F + L+S 
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 62.9 bits (152), Expect = 6e-12
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     +  K++  G+G  +P +   V V+  G+L DGTVF     S E+          
Sbjct: 94  VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVF----DSTEKTGKPATFQVS 148

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           QVI G   A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 149 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 3e-09
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLA 209
             G+  K++  G   +  K  D V V Y  RL DG V    +  G   T +     P   
Sbjct: 97  PSGLQYKVINSGNGVKPGKS-DTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWT 155

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +A++ M  G    + V     +G +        G + PN TL   + L+S K
Sbjct: 156 EALQLMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 202

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.9 bits (227), Expect = 7e-23
 Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL       G G      G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 98  I------GIKTMKKGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
                  GI  M  G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.3 bits (140), Expect = 5e-11
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE----EQVIDG 330
                G G     +G ++K   +GKL++G VF    +  +   F     E          
Sbjct: 13  CDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGIL 71

Query: 331 LDRAVITMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELV 379
               +  M       L I PE A+G   A  +    ++PP S + +++E +
Sbjct: 72  GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHF------- 204
           G+       G           +  +Y  +LE+G V       G   T + G         
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 205 -CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
                +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 89.9 bits (222), Expect = 9e-22
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 19/143 (13%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F      VIKGW 
Sbjct: 35  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVIKGWT 92

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------------- 138

Query: 158 KILKEGEKWENPKDLDEVLVNYE 180
              K+G K    +++DE+L   E
Sbjct: 139 ---KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     ++ + +  G G   P      +V   G+L+DGTVF     S  E+         
Sbjct: 30  VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVF----DSSRERGKPTTFRPN 85

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
           +VI G   A+  M++ +   L I  + A+G         ++PP S + ++VEL+S    K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI---K 139

Query: 386 ESWDMNTEEKIEAAGKKKEQ 405
           +     T E+++   +K E+
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHF--CPTLA 209
             G++ + +  G     P   D+  V+Y  RL DG V   +                   
Sbjct: 33  PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWT 92

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDD 269
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S K   +    
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 147

Query: 270 KKVIKKILKEGD 281
           ++V + + K  +
Sbjct: 148 EEVDEILRKAEE 159

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 1e-18
 Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEE 439
           F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E    +  D +
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499
             + + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +  + + D
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128

Query: 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
            A  D+KKA EI P+++ ++ E   +K+K+K    KE   Y
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 77.6 bits (190), Expect = 1e-17
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE--SGSPPTIPPNATLQFDVEL 140
             M+ G+     IP E AYG         IP +A  + D E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 287 NEGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAV 335
           ++G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           + M+  +   + I  E A+G   ++  +  +P ++    + E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYG-NRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 173 DEVLVNYEARLEDGMVV-----------------GKADGVEFTVKDGHFCPTLAKAVKTM 215
            ++ V+Y  +LE G V                   + + +EF V +G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEG-AVPPNATLQIALELVSWK-----TVSEITDD 269
           + G++  + +  +  +G + +             A  +    +V        T++E+TD+
Sbjct: 66  EVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITEVTDN 125

Query: 270 KKVI 273
           +  +
Sbjct: 126 EVTL 129

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 73.5 bits (180), Expect = 8e-17
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
             NGD   + +TG + D  +  S+  ++       G  + IKG++ G+  MK  +     
Sbjct: 2   LANGDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +     Y           +  + F+V L +
Sbjct: 59  LTFPSDYHVKE-----LQSKPVTFEVVLKA 83

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
            G +  +   G + D         S +             I G +  +I MK N+   L 
Sbjct: 4   NGDIAIIDFTGIV-DNKKL--ASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +     +   E          +  V +EV L + +
Sbjct: 59  LTFPSDYHVKE--------LQSKPVTFEVVLKAIK 85

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 169 PKDLDEVLVNYEARLEDGMVVGK-ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227
             + D  ++++   +++  +    A   E T+    F       +  MK  +K  LA+  
Sbjct: 2   LANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
              +  K             +  +   + L + K
Sbjct: 62  PSDYHVKE----------LQSKPVTFEVVLKAIK 85

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG 436
           F++   ++          A          ++ G    A   Y +A++    + +   +  
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 437 D---EEKKQAKALKVA------------CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481
           +   E+   A+A                   N A  K +  + ++A +L  K L++    
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530
             A    A    Q   L  A    K+A+ I P   D         ++M+
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +  A  + +  D++ AE+ C ++   +  N   L   +  + Q   LD +      A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 512 DPDNRDV 518
           +P   + 
Sbjct: 63  NPLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L     L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVL-----LLLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495
             ++    T  +  +    +A       Y + 
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 15/132 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G+   A   +EKAV            +     A      +N      + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTL----------DPNFLDAY-----INLGNVLKEARIFD 220

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A     + L L   +       A  Y +   +DLA    ++A+E+ P   D        
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 526 KEKMKEYNKKEA 537
            ++     + E 
Sbjct: 281 LKEKGSVAEAED 292

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 15/169 (8%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA         YE A+K+                       
Sbjct: 3   ADGALKRAEELKTQANDYFKAKD-------YENAIKFYSQAIELNPSNAI--------YY 47

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
            N +   L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++
Sbjct: 48  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107

Query: 512 DPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPMSVDS 560
            P ++D K++Y+   + +K+   + A         + +  + E M+++ 
Sbjct: 108 KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 156

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A K+KE GN  +K   +  A K Y+KA +    + +            + A         
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT--------YITNQAAVYFEKGDYN 55

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              +  ++A ++  +  +   +  KA  R   +Y +      A     K+L       DV
Sbjct: 56  KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DV 114

Query: 519 KLEYKTLKEKMKE 531
             + +  ++ +KE
Sbjct: 115 LKKCQQAEKILKE 127

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 8e-10
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 15/141 (10%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+                          N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALC 47

Query: 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 518 VKLEYKTLKEKMKEYNKKEAK 538
              +      ++ +  +  + 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSI 128

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E   + KE+GN     G    A + Y +A+K   ++                    N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSA 45

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
              K  DY++A +   K +DL     K   R+A A   +   + A+   ++ L+ + +N 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 105

Query: 517 DVKLEYKTLKEK 528
            +K   + ++ +
Sbjct: 106 QLKEGLQNMEAR 117

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 14/149 (9%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           +++  A            AG+Y  A+    +A   +E   +   EE          C+  
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 454 NAACKLKLKDYKQAEKLCTKVLDL-----------DSRNVKALYRRAQAYIQMADLDLAE 502
            A     L+ + +A     K L                 + A+Y RA A   +     A 
Sbjct: 61  LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
            + KK +E+  + +      + + E   +
Sbjct: 121 PEFKKVVEMIEERKGETPGKERMMEVAID 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466
           N L       +  K+++                 K  +     C +          D ++
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTR----YNDDIRK 54

Query: 467 AEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
              L  ++L   S+      ++  A    ++ + + A   ++  L+ +P N   K   + 
Sbjct: 55  GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114

Query: 525 LKEKMK 530
           + + MK
Sbjct: 115 IDKAMK 120

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 18/197 (9%)

Query: 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS 419
           + E+  VP   T+  EV L   E+   S  +  +E+ +      E+G      G  A A 
Sbjct: 1   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLL---YERGVLYDSLGLRALAR 57

Query: 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479
             + +A+                                 +  ++  A +    VL+LD 
Sbjct: 58  NDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 102

Query: 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
               A   R  A        LA+ D+    + DP++    L     ++K+ E   KE   
Sbjct: 103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162

Query: 540 YGNMFAKMTEPKEAEPM 556
                +   +       
Sbjct: 163 QHFEKSDKEQWGWNIVE 179

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%)

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
                      +    ++ +   T    L     +  +   + Y+ + DLD A    K A
Sbjct: 176 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235

Query: 509 LEIDPDN 515
           +  +  N
Sbjct: 236 VANNVHN 242

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G        +  A   +                +   ++        N       LK+ 
Sbjct: 11  EGVLAADKKDWKGALDAFSAV-------------QDPHSRIC-----FNIGCMYTILKNM 52

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            +AEK  T+ ++ D     A ++R   Y Q    DLA  D+K+AL     N+ +  +YK 
Sbjct: 53  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--DYKI 110

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
           L  + K +  +       M+AK  E K+AE
Sbjct: 111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAE 140

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 17/130 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G    K    +   K    +  YI                    C ++            
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQH-----------------CLVHLGDIARYRNQTS 169

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           QAE        L   N +   + A       D     F   +++ +           +  
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229

Query: 526 KEKMKEYNKK 535
             K  E   +
Sbjct: 230 LSKALESRDE 239

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 12/157 (7%), Positives = 31/157 (19%), Gaps = 33/157 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-----------------KQAKALKV 448
                           Y+K    +  D  +  ++K                 +     + 
Sbjct: 27  AEVWTSRQALQDL---YQKM---LVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80

Query: 449 ACNLNNAACKLK------LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
             N +     L          Y Q  +    V ++D        +      +        
Sbjct: 81  NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140

Query: 503 FDIKKALEIDPD----NRDVKLEYKTLKEKMKEYNKK 535
                +          +      Y+    + + Y + 
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRH 177

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 12/169 (7%), Positives = 34/169 (20%), Gaps = 18/169 (10%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---- 436
             +E    D               +   L +      +  +       +  +        
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219

Query: 437 -----------DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485
                             +A  +     +      L+   ++ K   ++   +   +  +
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279

Query: 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
               +A   +               +DP           L+ K    N 
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY---LDDLRSKFLLENS 325

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 18/173 (10%), Positives = 48/173 (27%), Gaps = 30/173 (17%)

Query: 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK------ALKVACNL------------ 452
           K  +    +KR E+  K   Y ++     +K+         L++   +            
Sbjct: 8   KTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWN 67

Query: 453 ----------NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                        + +      K         L ++ ++    + R     ++ + + A 
Sbjct: 68  CRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 127

Query: 503 F--DIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEA 553
                 + LE D  N       + +  +      +E  F  ++  +      +
Sbjct: 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 12/83 (14%), Positives = 27/83 (32%)

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
                 A        ++A     + L+L    +++ Y    + I +     A     +AL
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267

Query: 510 EIDPDNRDVKLEYKTLKEKMKEY 532
            +   +R  + E   + E +   
Sbjct: 268 NMQRKSRGPRGEGGAMSENIWST 290

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 21/175 (12%)

Query: 380 SFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE 439
           +++K  +  + N            E+G    + G    A   +E AV+           +
Sbjct: 3   TYDKGYQFEEENPLRDHPQP---FEEGLRRLQEGDLPNAVLLFEAAVQQ----------D 49

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499
            K  +A            + + +    A     + L+L   N  AL   A ++   +   
Sbjct: 50  PKHMEAW-----QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104

Query: 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAE 554
            A   ++  L   P    +       +E         +K         +   E +
Sbjct: 105 QACEILRDWLRYTPAYAHL---VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 156

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 462 KDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
            D +   K+ T +     SR  + LY       ++ +  +A+  +    E + +N+ V  
Sbjct: 52  NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111

Query: 521 EYKTLKEKMK 530
               +++K++
Sbjct: 112 LKSMVEDKIQ 121

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 15/116 (12%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q       G+  +A +   +A+K             K A         +         D+
Sbjct: 2   QWKNALSEGQLQQALELLIEAIK----------ASPKDASLR-----SSFIELLCIDGDF 46

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
           ++A++   + + L    +    +                    A  +  +    K 
Sbjct: 47  ERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	562
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.94
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.94
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.93
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.93
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.91
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.91
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.88
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.88
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.85
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.83
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.79
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.79
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.77
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.7
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.57
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.54
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.36
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.28
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.24
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.24
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.2
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.15
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.11
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.1
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.09
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.07
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	99.02
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.67
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.66
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.62
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.49
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.44
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.39
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.21
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.17
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.96
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.79
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.79
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.12
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.07
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.95
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.19
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.0

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=9.9e-27  Score=209.44  Aligned_cols=167  Identities=40%  Similarity=0.677  Sum_probs=159.9

Q ss_pred             cccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH
Q 008540          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (562)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~  464 (562)
                      ++.|.|+.+|+++.+..++++|+.+|+.|+|..|+..|++|+.+++.......+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            36899999999999999999999999999999999999999999998888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540          465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (562)
Q Consensus       465 ~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f  544 (562)
                      .+|+.+|+++|.++|+++++|+++|.||..+|+|++|+.+|++|+.++|+|+.+...+..+..++.+..+++++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 008540          545 AKMTEPK  551 (562)
Q Consensus       545 ~~~~~~~  551 (562)
                      .++...+
T Consensus       161 ~~~~~~d  167 (168)
T d1kt1a1         161 KKFAEQD  167 (168)
T ss_dssp             HHHHTTC
T ss_pred             hhhhhcC
Confidence            9886543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-26  Score=206.65  Aligned_cols=163  Identities=40%  Similarity=0.722  Sum_probs=157.7

Q ss_pred             cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (562)
Q Consensus       387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (562)
                      +|+|+.+++++.+..++++|+.+|++|+|+.|+..|++|+++++........+......+...+|+|+|.||+++++|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999999988888888888999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~  546 (562)
                      |+.+|+++|.++|+++++|+++|.||..+|+|++|+.+|++|++++|+|+.+...+..+..++.+..+++++.|++||++
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q 008540          547 MTE  549 (562)
Q Consensus       547 ~~~  549 (562)
                      +..
T Consensus       161 ~~~  163 (170)
T d1p5qa1         161 LAE  163 (170)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            754

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2e-26  Score=192.55  Aligned_cols=110  Identities=56%  Similarity=1.009  Sum_probs=105.5

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      .++||+|+++++|+|...|..||.|++||++++.||++|++|+.++.|+.|.+|.+++++||++||.+|++||+++|+||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            56899999999999977899999999999999999999999988779999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |++|||+.+.++.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999988999999999999999986

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.5e-26  Score=189.83  Aligned_cols=111  Identities=57%  Similarity=0.936  Sum_probs=106.0

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      .++||+|+++++|+|...|..||.|.|||++++.||++|++|++++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip   88 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK   88 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEEC
Confidence            45999999999999977789999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      |++|||+.+.++.||++++|+|+|+|++|+.
T Consensus        89 ~~laYG~~g~~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          89 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHhCCCcCCCCCCCcCCcEEEEEEEEEEeC
Confidence            9999999999889999999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-25  Score=186.64  Aligned_cols=112  Identities=50%  Similarity=0.858  Sum_probs=106.2

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ++.++||+++++++|+|...|+.||.|.|||++++.||++|++++....|+.|.+|.+++++||++||.+|++|++++|+
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~   81 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEE
Confidence            45789999999999999666899999999999999999999999988899999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |||++|||..+.++.||++++|+|+|+|+++.
T Consensus        82 iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             echHHeecCcCCCCccCcCCeEEEEEEEEEeC
Confidence            99999999999988899999999999999873

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=184.65  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=102.0

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCC
Q 008540           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (562)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~  117 (562)
                      |++|+++++|+|...|..||.|++||++++.||++|+++++++.|+.|.+|.+++++||++||.+|++|++++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999965689999999999999999999999988779999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       118 ~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |||..+.++.||+|++|+|+|+|++++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999999888899999999999999874

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.93  E-value=2.8e-26  Score=189.77  Aligned_cols=110  Identities=53%  Similarity=0.911  Sum_probs=86.1

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip  114 (562)
                      +++|++|+++++|.|...|..||.|+|||++++.||++|++|++.+.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            57999999999999967799999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |++|||+.+.++.||++++|+|+|+|++|+
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            999999999888999999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.91  E-value=1.1e-23  Score=185.98  Aligned_cols=149  Identities=34%  Similarity=0.507  Sum_probs=137.3

Q ss_pred             cccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-HHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKKQAKALKVACNLNNAACKLKLKD  463 (562)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~k~~~  463 (562)
                      ++.|+|+.+++++.+..++++|+.+|+.|+|.+|+..|++|+++++....... ........+.+.+|+|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            57899999999999999999999999999999999999999999887665433 34556677788899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (562)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  533 (562)
                      |.+|+.+|+++|+++|+++++||++|.||..+|+|++|+.+|+++++++|+|.++...+..+..++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999988877653

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2.2e-24  Score=198.59  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++||||++||.+|++|++++|+
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999887889999887  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~  145 (562)
                      |||++|||+.+.++.||||++|+|+|+|++|..
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            999999999999889999999999999999874

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.2e-24  Score=196.78  Aligned_cols=108  Identities=49%  Similarity=0.916  Sum_probs=103.0

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+++|++|+++++|+| +.|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||++||.+|++|++++|+
T Consensus       103 ~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         103 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            45899999999999999 89999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~  144 (562)
                      |||++|||+.+.+ .||||++|+|+|+|++|+
T Consensus       180 iP~~laYG~~g~~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVP-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCC-CCCcCCcEEEEEEEEEEC
Confidence            9999999999976 599999999999999874

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-23  Score=175.92  Aligned_cols=107  Identities=47%  Similarity=0.845  Sum_probs=99.0

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCC-------CCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (562)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~-------~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~  110 (562)
                      ++.++|+++|+|...|+.||.|+|||++++.||++||+|..       ..+|+.|.+|.+++++||++||.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            47899999999966799999999999999999999999864       34799999999999999999999999999999


Q ss_pred             EEecCCCccCCCCCC-CCCCCCCcEEEEEEEeEee
Q 008540          111 FTIPPELAYGESGSP-PTIPPNATLQFDVELLSWT  144 (562)
Q Consensus       111 v~ip~~~~yg~~~~~-~~ip~~~~l~~~vel~~~~  144 (562)
                      |+|||++|||+.+.+ ..||++++|+|+|+|+++.
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            999999999999875 5799999999999999873

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=5.7e-24  Score=180.25  Aligned_cols=111  Identities=41%  Similarity=0.712  Sum_probs=103.1

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcc------ccc
Q 008540           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (562)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~g------m~~  105 (562)
                      +..+||||+|+++++|+| +.|+.||.|.|||++++.||++|++|+..+.|+.|.+|.+.+++||++++.+      |++
T Consensus         3 ~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccC
Confidence            467999999999999999 7899999999999999999999999988779999999999999999998865      999


Q ss_pred             ccEEEEEecCCCccCCCCC-----CCCCCCCCcEEEEEEEeEe
Q 008540          106 GENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELLSW  143 (562)
Q Consensus       106 Ge~~~v~ip~~~~yg~~~~-----~~~ip~~~~l~~~vel~~~  143 (562)
                      |++++|+|||++|||+++.     .+.||++++|+|+|||+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999875     2459999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=2.7e-23  Score=182.90  Aligned_cols=114  Identities=41%  Similarity=0.662  Sum_probs=103.1

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~  112 (562)
                      ..+|+||+|+++++|+|...|..||.|.|||++++.||++|+++.....|+.  ++.+.+|+||+++|.+|++|++++|+
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~~--~~~~~~i~G~~e~l~~M~~Ge~~~v~  107 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTT--FRPNEVIKGWTEALQLMREGDRWRLF  107 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEE--ECGGGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCccc--cCccccchhHHHHhcCccccceeEEE
Confidence            4589999999999999966789999999999999999999999987666755  55669999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccc
Q 008540          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKD  148 (562)
Q Consensus       113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~  148 (562)
                      |||++|||..+.++.||++++|+|+|+|++|.+...
T Consensus       108 iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         108 IPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             ECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             eCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCC
Confidence            999999999998888999999999999999975433

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-22  Score=167.15  Aligned_cols=111  Identities=42%  Similarity=0.607  Sum_probs=103.1

Q ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~  347 (562)
                      .|++++++|+++|.|...|..|++|+|||++++.||++|+++..  ++.|++|.+|.+.+|+||+.+|.+|++||++.|.
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~--~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~   86 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD--RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT   86 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT--SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccc--cccceeeecCCCceeeeeeeeeccccCCcEEEEE
Confidence            48999999999999988899999999999999999999998753  6789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (562)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (562)
                      |||+++||+.+..   ..||++++|+|+|+|++++.
T Consensus        87 ip~~laYG~~g~~---~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          87 CKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             ECHHHhCCCcCCC---CCCCcCCcEEEEEEEEEEeC
Confidence            9999999998864   47999999999999999863

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=1.6e-22  Score=168.63  Aligned_cols=110  Identities=39%  Similarity=0.632  Sum_probs=102.6

Q ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~  347 (562)
                      .|+++.++++++|+|..+|..|++|+|||.+++.||++|+++..  ++.|++|.+|.+.+++||+.+|.+|++||++.|.
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~--~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~   85 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD--RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT   85 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc--cceeeeeeccCcceeeeeeeeeeeecCCceEEEE
Confidence            48999999999999988899999999999999999999998753  5789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      |||+++||+.++.   +.||++++|.|+|+|++|.
T Consensus        86 ipp~laYG~~g~~---~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          86 IRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             ECHHHhCCcCCCC---CccCcCCcEEEEEEEEEEe
Confidence            9999999998864   4699999999999999875

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.7e-21  Score=162.36  Aligned_cols=110  Identities=41%  Similarity=0.652  Sum_probs=99.4

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCC-----CCcccEEEEcCCcchhhHHHHHHhccCCCcEEE
Q 008540          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (562)
Q Consensus       271 ~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~-----~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~  345 (562)
                      ++.|+|+++|+|...|..|++|+|||++++.||++||++...     ....|++|.+|.+.+|+||+.+|.+|++||++.
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            578999999999888999999999999999999999987431     346799999999999999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      |+|+|+++||+.+...  ..||++++|.|+|+|++++
T Consensus        82 ~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            9999999999987653  5699999999999999863

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.7e-21  Score=162.50  Aligned_cols=107  Identities=31%  Similarity=0.682  Sum_probs=95.9

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCC---ccchhHHHHHcccccccEE
Q 008540           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---NVIKGWDIGIKTMKKGENA  109 (562)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~---~~~~g~~~~l~gm~~Ge~~  109 (562)
                      .+.++||+|+++++|+|+..|..||.|+|||++++ +|++|+++     +..|.++.+   .+|+||++||.+|++||++
T Consensus         4 ~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~   77 (115)
T d1kt1a3           4 LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQC   77 (115)
T ss_dssp             TTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             cccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhcee
Confidence            45899999999999999778999999999999996 78888764     467777653   5899999999999999999


Q ss_pred             EEEecCCCccCCCCCCC-CCCCCCcEEEEEEEeEeee
Q 008540          110 VFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTS  145 (562)
Q Consensus       110 ~v~ip~~~~yg~~~~~~-~ip~~~~l~~~vel~~~~~  145 (562)
                      +|+|||++|||..+.++ .||++++|+|+|+|++|..
T Consensus        78 ~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          78 ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            99999999999999876 6999999999999999874

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=2.7e-22  Score=165.54  Aligned_cols=110  Identities=38%  Similarity=0.598  Sum_probs=84.5

Q ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~  347 (562)
                      .|+++.++++++|+|...|..|++|+|||++++.||++|+++.  +.+.|++|.+|.+.+|+||+.+|.+|++||++.|+
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~--~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSH--DRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC--------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEE--ecceeeeeecCCCcEEeeeeeeehhccCCcEEEEE
Confidence            3789999999999998889999999999999999999998765  36789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      ||+++|||+.+..   +.|||+++|+|+|+|++++
T Consensus        80 ip~~layG~~g~~---~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSL---PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCT---TTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCC---CcCCcCCeEEEEEEEEEEC
Confidence            9999999998864   4799999999999999874

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.5e-21  Score=157.79  Aligned_cols=107  Identities=32%  Similarity=0.604  Sum_probs=98.5

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcC
Q 008540          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (562)
Q Consensus       271 ~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~  350 (562)
                      ++.++++++|+|...|..|++|+|||.+++.||++|+++.  ++..|++|.+|.+.+++||+.+|..|++||++.|.|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~--~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSR--DRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeee--ccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECH
Confidence            4788999999998789999999999999999999999875  36789999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (562)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~  382 (562)
                      +++||+.+..   ..||++++|+|+|+|++++
T Consensus        79 ~laYG~~g~~---~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCC---CCCCcCCeEEEEEEEEEEC
Confidence            9999998764   4699999999999999864

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.9e-21  Score=158.19  Aligned_cols=108  Identities=31%  Similarity=0.507  Sum_probs=100.6

Q ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEE
Q 008540          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (562)
Q Consensus       269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i  348 (562)
                      |+++.++++++|+|...|..|++|+|||++++.||++|+++.  +...++.|.++.+.+++||+.+|..|++||++.|.+
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~--~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSV--DRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEST--TTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccc--cCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            688999999999998889999999999999999999999875  367899999999999999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (562)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~  381 (562)
                      ||++|||+.+..   ..||++++|+|+|+|+++
T Consensus        83 P~~laYG~~g~~---~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          83 PGPYAYGPRGFP---GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEE
T ss_pred             chHHeecCcCCC---CccCcCCeEEEEEEEEEe
Confidence            999999998865   359999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1e-20  Score=169.73  Aligned_cols=150  Identities=34%  Similarity=0.585  Sum_probs=133.8

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (562)
Q Consensus       391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (562)
                      +.+..+..+..+++.|+.+|+.|+|..|+..|++|+.+.+..... ........+.....+++|+|.||.++++|++|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            456777888999999999999999999999999999987754322 2334445667788899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (562)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~  540 (562)
                      +|++||+++|+++++|+++|.||..+|+|++|+.+|++|++++|+|..+...+..+..++.+.++++++.|
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~y  169 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999998888876543

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.83  E-value=2.4e-20  Score=155.42  Aligned_cols=110  Identities=35%  Similarity=0.657  Sum_probs=97.5

Q ss_pred             eeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCc---chhhHHHHHHhccCC
Q 008540          264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKK  340 (562)
Q Consensus       264 ~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~---~v~~gle~~l~~M~~  340 (562)
                      ++++.|+++.|+|+++|+|..+|..|++|+|||++++ +|++|+++       ++.|.++..   .+|+||+.+|.+|++
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-------~~~~~~~~~~~~~vi~G~~~~l~~M~~   73 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQR   73 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-------ccCceeeeccccccCchhHhhhccchh
Confidence            5788999999999999999889999999999999997 67777643       366777654   689999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (562)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~  383 (562)
                      ||++.|+|||+++||+.+...  ..||++++|.|+|+|+++++
T Consensus        74 Ge~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          74 EEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TCEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEEC
T ss_pred             hceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999987653  36999999999999999985

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-20  Score=155.06  Aligned_cols=107  Identities=33%  Similarity=0.679  Sum_probs=92.9

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCC---ccchhHHHHHcccccccEEEE
Q 008540           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---NVIKGWDIGIKTMKKGENAVF  111 (562)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~---~~~~g~~~~l~gm~~Ge~~~v  111 (562)
                      .++||+|+++++|+|+..|..||.|+|||++++.+|. |+++     +..|..+.+   ++++||+++|.+|++|++++|
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            4699999999999997789999999999999987664 4443     355666543   689999999999999999999


Q ss_pred             EecCCCccCCCCCCC-CCCCCCcEEEEEEEeEeeecc
Q 008540          112 TIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVK  147 (562)
Q Consensus       112 ~ip~~~~yg~~~~~~-~ip~~~~l~~~vel~~~~~~~  147 (562)
                      +|||++|||..+.+. .||++++|+|+|+|+++....
T Consensus        80 ~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          80 YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999998764 799999999999999998654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=150.32  Aligned_cols=115  Identities=23%  Similarity=0.259  Sum_probs=108.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..++++|+.+|+.|+|++|+..|++||+..|.+..               +|+++|.||.++++|++|+.+|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---------------~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------------LYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---------------hhhcccccccccccccccchhhhhHHHh
Confidence            4667899999999999999999999999999887654               3999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      +|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+...++.++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999988864

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.79  E-value=1.4e-19  Score=166.06  Aligned_cols=105  Identities=27%  Similarity=0.445  Sum_probs=94.7

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      ..+.++.+++++.|+| ..|..+|.|++||++++.||++|+++    .|+.|  +.+++++||+++|.+|++|++++++|
T Consensus        95 ~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~--~~~~~i~G~~e~l~~m~~G~~~~~~i  171 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYV  171 (204)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEE--EGGGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             EecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCcee--cCCccchhHHHHhcCCCCCCEEEEEE
Confidence            4578899999999999 78999999999999999999999987    45555  45589999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (562)
                      ||++|||+.|.+     +.||||++|+|+|+|+++..
T Consensus       172 P~~laYG~~g~~-----~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         172 PSGLAYGPRSVG-----GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             CGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEEC
T ss_pred             ChHHCcCCCCCC-----CCcCcCCcEEEEEEEEEEEc
Confidence            999999999885     67999999999999998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=154.62  Aligned_cols=124  Identities=25%  Similarity=0.401  Sum_probs=115.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (562)
Q Consensus       393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (562)
                      +..++.|..++.+||.+|+.|+|++|+..|++|+++.|.+..               +|+|+|.||+++|++++|+.+|+
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------------YYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh---------------hhhhhHHHHHhccccchHHHHHH
Confidence            456788999999999999999999999999999999887543               38999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      ++|+++|+++++|+++|.+|..+|++++|+.+|++++.++|++..+...+..+...+.+
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888665544

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.3e-19  Score=146.06  Aligned_cols=108  Identities=39%  Similarity=0.728  Sum_probs=93.7

Q ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCc---chhhHHHHHHhccCCCcEE
Q 008540          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVA  344 (562)
Q Consensus       268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~---~v~~gle~~l~~M~~GE~~  344 (562)
                      .|+++.++|+++|.|..+|..|++|+|||++++.+++ |+++       +..|..+..   .+|+||+.+|.+|++||++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-------~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~   77 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-------ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   77 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-------cccceeeecceeeeCcHHHHhhhcchhhCeE
Confidence            5899999999999998899999999999999998775 4432       245666554   6899999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeecc
Q 008540          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK  385 (562)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~  385 (562)
                      .++|||++|||..+...  ..|||+++|+|+|+|+++.+.+
T Consensus        78 ~i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          78 IVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCC
T ss_pred             EEEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999987653  4799999999999999998654

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.79  E-value=2.1e-19  Score=157.69  Aligned_cols=109  Identities=25%  Similarity=0.434  Sum_probs=99.3

Q ss_pred             cccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540          149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (562)
Q Consensus       149 ~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp  226 (562)
                      +..+.++.++++++|.|...|..||.|+|||++++.||++|+++  ....|.++.+++++||+++|.+|++|++++|+||
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~~~~~~~~i~G~~e~l~~M~~Ge~~~v~iP  109 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIP  109 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGGGSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCccccCccccchhHHHHhcCccccceeEEEeC
Confidence            34577899999999999778999999999999999999999986  4556888999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (562)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (562)
                      |++|||..|.+     +.||||++|+|+|+|+++..
T Consensus       110 p~laYG~~g~~-----~~IPp~s~LifeIeLl~i~~  140 (160)
T d1jvwa_         110 YDLAYGVTGGG-----GMIPPYSPLEFDVELISIKD  140 (160)
T ss_dssp             GGGTTTTTCSS-----SSSCTTCCEEEEEEEEEEGG
T ss_pred             HHHCcCCCCCC-----CCcCcCCcEEEEEEEEEEec
Confidence            99999998875     67999999999999999865

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=7.1e-19  Score=161.95  Aligned_cols=102  Identities=31%  Similarity=0.631  Sum_probs=94.3

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v  225 (562)
                      ..+.++.++++++|+| ..|..||.|+|||++++.||++|+++    .|+.|.+|  ++++||+++|.+|++|++++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEEE
Confidence            4578899999999999 89999999999999999999999986    67888775  69999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      ||++|||+.|.+      .||||++|+|+|+|+++
T Consensus       181 P~~laYG~~g~~------~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         181 PPELAYGKAGVP------GIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             CGGGTTTTTCBT------TBCTTCCEEEEEEEEEE
T ss_pred             CHHHCcCCCCCC------CCCcCCcEEEEEEEEEE
Confidence            999999999974      59999999999999986

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=3.8e-19  Score=150.18  Aligned_cols=110  Identities=19%  Similarity=0.342  Sum_probs=98.8

Q ss_pred             ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhh------ccCCc
Q 008540          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE  219 (562)
Q Consensus       150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge  219 (562)
                      +.+.++.++++++|+| ..|..||.|++||++++.+|++|+++    .+..|.+|.+.+++||++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            4567899999999999 78999999999999999999999987    7899999999999999999865      99999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540          220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (562)
Q Consensus       220 ~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~  260 (562)
                      +++++|||++|||+.|.........|||+++|+|+|+|+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999999886433444569999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.3e-17  Score=152.85  Aligned_cols=103  Identities=32%  Similarity=0.454  Sum_probs=96.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      |+.++++||.+|+.|+|+.|+..|++|+.+.|.+..               +|+|+|.||+++|+|++|+.+|++|++++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~---------------~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------------YYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            677999999999999999999999999999887543               49999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      |+++++|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999999999988643

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.69  E-value=2.3e-18  Score=149.37  Aligned_cols=124  Identities=25%  Similarity=0.446  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCcc
Q 008540           53 PENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (562)
Q Consensus        53 ~~~gd~V~v~y~~~~~~g~~~~~t~~-------------~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~y  119 (562)
                      +++||.|.|||++++.||++|++|++             .+.|+.|.+|.++++|||++||.||++|++++|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            68999999999999999999999853             34799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEeEeeeccc------cccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540          120 GESGSPPTIPPNATLQFDVELLSWTSVKD------ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (562)
Q Consensus       120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~------~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (562)
                      |+++..        +++.+....+.....      .........++.+.        .++.|+++|||++++.++.++-
T Consensus        82 G~~d~~--------~v~~vp~~~f~~~~~~~~~~~~~~~~~~~~~V~~v--------~~~~v~vD~NHPlAG~~L~f~v  144 (151)
T d1ix5a_          82 GNRNEM--------LIQKIPRDAFKEADFEPEEGMVILAEGIPATITEV--------TDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             CSCCST--------TBCCEETHHHHTSTTCCCTTEEEESSSCEEEEEEE--------ETTEEEEECCCSSTTCCEEEEC
T ss_pred             cccccC--------ccceehhhhccccccccccceEEecCCCceEEEEE--------cCCEEEEECCCcCCCCeEEEEE
Confidence            987732        222222211111000      00011112222222        3478999999999999887753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.5e-16  Score=131.54  Aligned_cols=118  Identities=26%  Similarity=0.332  Sum_probs=102.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..|.++++.|+.+|+.|+|++|+.+|++|+++.|.+.               .+++|+|.||.++++|++|+.+|+++++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---------------HHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3578899999999999999999999999999988643               3489999999999999999999999999


Q ss_pred             cCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          477 LDSRNV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       477 ~~p~~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ++|.+.       ++|+++|.++..+++|++|+.+|++++.++++ +++...+..+.+.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            998774       57888899999999999999999999999875 567777766655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5e-15  Score=124.00  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=100.4

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc---cCHHHHHHHHHHHHhcCC
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~---~~~~~A~~~~~~al~~~p  479 (562)
                      -+..|.++..++|++|.+.|++|+.+.|.+...               ++|+|.|+++.   +++++|+..+++++..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~---------------~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKST---------------QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH---------------HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            456789999999999999999999998876543               89999999874   456789999999999998


Q ss_pred             CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          480 RN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       480 ~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      .+  ..+||++|.||..+|+|++|+.+|+++++++|+|..++.++..+.+++.+
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            66  45999999999999999999999999999999999999988888766543

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.54  E-value=5.9e-15  Score=114.52  Aligned_cols=85  Identities=22%  Similarity=0.430  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (562)
Q Consensus        52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~  131 (562)
                      +++.||.|+|+|+++. ||++|+++..  ..+.|.+|.++++|||+++|.||++|++++|.|+++.+|+..+.     +|
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----aG   72 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QS   72 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----CC
Confidence            3678999999999997 9999998764  57999999999999999999999999999999999999998774     67


Q ss_pred             CcEEEEEEEeEee
Q 008540          132 ATLQFDVELLSWT  144 (562)
Q Consensus       132 ~~l~~~vel~~~~  144 (562)
                      +++.|+|+|.+++
T Consensus        73 k~~~f~V~v~~Vk   85 (85)
T d1hxva_          73 KPVTFEVVLKAIK   85 (85)
T ss_dssp             CCCEEEEEECCBC
T ss_pred             CcEEEEEEEEEeC
Confidence            9999999998763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1e-13  Score=131.55  Aligned_cols=119  Identities=19%  Similarity=0.080  Sum_probs=107.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..+..+..+|..+++.|+|++|+..|++|+.+.|++..               +|+++|.||.++|++++|+.+|+++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------------VFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH---------------HHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            45778899999999999999999999999999887543               389999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ++|++..+++++|.+|..+|++++|+..|+++++++|++......+..+..+..
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999876666655544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.48  E-value=2.7e-14  Score=125.31  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=97.6

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (562)
Q Consensus       395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (562)
                      .+..+..+...|+.+|+.|+|++|+..|++|+++.+..+....   .........+|+|+|.||.++|+|++|+.+|+++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            3456667778899999999999999999999999987654311   0112234567999999999999999999999999


Q ss_pred             HhcCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          475 LDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       475 l~~~p~-----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      |.+.|.           ..++|+++|.+|..+|++++|+.+|++|+++.|..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            987542           35689999999999999999999999999997654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3e-13  Score=122.84  Aligned_cols=121  Identities=23%  Similarity=0.224  Sum_probs=100.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+.++|..++.+|+|+.|+..|.++.   +..               ..+++|+|.||+++|+|++|+.+|++||++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~---------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l   65 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPH---------------SRICFNIGCMYTILKNMTEAEKAFTRSINR   65 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence            45677889999999999999999998632   111               124889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKE  536 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~l~~~~~~~~~~~  536 (562)
                      +|+++.+|+++|.||.++|+|++|+.+|++|+...+.|.                ++...++.+...+.+..+..
T Consensus        66 dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          66 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999998766542                44556676666666555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=1.4e-13  Score=118.91  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=97.7

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc----------cCHHHHHHHHHHHHh
Q 008540          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLD  476 (562)
Q Consensus       407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~----------~~~~~A~~~~~~al~  476 (562)
                      ..+-+.+.|++|+..|++|+++.|.+...               ++|+|.+++.+          +.+++|+..|++|++
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~---------------~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~   69 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL   69 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHH---------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            34556778999999999999999987654               88999998854          556899999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (562)
Q Consensus       477 ~~p~~~ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  534 (562)
                      ++|++..+|+++|.+|..+|+           |++|+++|++|++++|+|..++..|..+.+..+.+.+
T Consensus        70 l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          70 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764           7999999999999999999999999988766555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=3.4e-13  Score=111.05  Aligned_cols=94  Identities=13%  Similarity=0.044  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      ...+.|..++++|++.+|+..|++++...|...               .+|+++|.|+.+++++++|+.+++++++++|+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccc---------------hhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence            346789999999999999999999999988654               34889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540          481 NVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (562)
Q Consensus       481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al  509 (562)
                      +..+++.+|.+|..+|++++|++.|+++|
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999986

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.36  E-value=9.5e-14  Score=119.83  Aligned_cols=68  Identities=22%  Similarity=0.441  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~  231 (562)
                      ...|+.|++||++++.+|++|++|                 +|+.|++|.++++|||+++|.+|+.|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            467899999999999999999876                 589999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 008540          232 GEKGK  236 (562)
Q Consensus       232 g~~~~  236 (562)
                      |+.+.
T Consensus        82 G~~d~   86 (151)
T d1ix5a_          82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             ccccc
Confidence            97654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=112.07  Aligned_cols=100  Identities=15%  Similarity=0.093  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (562)
Q Consensus       401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (562)
                      .+.++|+.++..|+|+.|+..|++|+++.|....               +|+|+|.||.++|+|++|+.+|++++...+.
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~---------------a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------------AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh---------------hHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            4779999999999999999999999999887543               4999999999999999999999999987654


Q ss_pred             C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540          481 N----------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       481 ~----------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~  515 (562)
                      |                ..++|++|.+|..++++++|++.|.+|+.+.|+.
T Consensus       103 n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            3                4789999999999999999999999999998875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.2e-12  Score=124.32  Aligned_cols=107  Identities=16%  Similarity=0.135  Sum_probs=93.8

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (562)
Q Consensus       400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (562)
                      ..+...|..++..|++++|+..|++++...|...               .+++++|.++.++|++++|+.+|+++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccc---------------cchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3466789999999999999999999999887643               2488999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      +++.+|+++|.+|..+|++++|+..|++|++++|++..+...
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence            999999999999999999999999999999999998765443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.9e-12  Score=123.01  Aligned_cols=131  Identities=15%  Similarity=0.045  Sum_probs=83.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------C-hHHHHHHH------HHHHHHHhcHHHH
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------G-DEEKKQAK------ALKVACNLNNAAC  457 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~-~~~~~~~~------~~~~~~~~nla~~  457 (562)
                      .+..+...|..+.+++.+++|+..|++||++.|.+...             . ++......      .-...+|+++|.+
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            44555566777777777777777777777776654322             0 00000000      0123346677777


Q ss_pred             HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      +.++|++++|+..++++++++|+|..+|+++|.++..++++++|+.+|++|++++|+|..++..++.+...
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777666666655444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-11  Score=121.75  Aligned_cols=130  Identities=18%  Similarity=0.103  Sum_probs=99.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHHH------HHHHHHhcHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAKA------LKVACNLNNAACKL  459 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~nla~~~~  459 (562)
                      +..+...|..+++.|++++|+..|++|+++.|......             .+-....+.      ....++.+++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            34566778888888888888888888888766532110             000000000      12345778899999


Q ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      ++|++++|+..++++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++..++..++.+..+
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888888776544

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.24  E-value=1.4e-11  Score=94.99  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCC
Q 008540          169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVP  246 (562)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip  246 (562)
                      +..||.|+++|++.+ +|+.+.++  ....+.+|.++++|||+++|.+|++|+++.+.|++..+|+..+.          
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l----------   70 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL----------   70 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG----------
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccccccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC----------
Confidence            467999999999997 88888875  78899999999999999999999999999999998889986543          


Q ss_pred             CCCeEEEEEEeecc
Q 008540          247 PNATLQIALELVSW  260 (562)
Q Consensus       247 ~~~~l~~~v~l~~~  260 (562)
                      +|.++.|+|+|.+.
T Consensus        71 aGk~~~f~V~v~~V   84 (85)
T d1hxva_          71 QSKPVTFEVVLKAI   84 (85)
T ss_dssp             GSCCCEEEEEECCB
T ss_pred             CCCcEEEEEEEEEe
Confidence            67889999999875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-11  Score=96.87  Aligned_cols=89  Identities=19%  Similarity=0.108  Sum_probs=73.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+.+.|+.+++.|+|.+|+..|++|+++.+.......        .+..++.|+|.|+.++|+|++|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~--------~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI--------DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS--------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc--------cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            345678999999999999999999999999887543311        134568889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 008540          479 SRNVKALYRRAQAYIQM  495 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l  495 (562)
                      |++..|+++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999887765544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=7.9e-11  Score=96.44  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=82.8

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      ++++|.++++.|++.+|+..+++++..+|+++.+|+.+|.+|..++++++|+.+|++|++++|++..++..++.+...++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 008540          531 EYNKKEA  537 (562)
Q Consensus       531 ~~~~~~~  537 (562)
                      +..++..
T Consensus        99 ~~~~A~~  105 (112)
T d1hxia_          99 NANAALA  105 (112)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            8877654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=1.6e-10  Score=102.89  Aligned_cols=127  Identities=14%  Similarity=0.060  Sum_probs=108.2

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~  468 (562)
                      +.....+...|+.++..|+++.|+..|.+|+.+.+...       .+...+...+......++.+++.+++++|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            34567889999999999999999999999999876432       12235566777888899999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHH
Q 008540          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA-------LEIDPDNRDVKLEYK  523 (562)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a-------l~l~p~~~~~~~~l~  523 (562)
                      .+|++++.++|.+..+|.+++.+|..+|++.+|+..|+++       +.++|. ++....+.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~  148 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNE  148 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHH
Confidence            9999999999999999999999999999999999999998       456776 34444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.2e-11  Score=115.02  Aligned_cols=121  Identities=12%  Similarity=-0.011  Sum_probs=99.9

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (562)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~  492 (562)
                      .+++.|+..+++++....    ..+       .....+++++|.+|.++|+|++|+.+++++|+++|+++.+|+++|.+|
T Consensus        13 ~~~e~al~~~~e~l~~~~----~~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   81 (259)
T d1xnfa_          13 LQQEVILARMEQILASRA----LTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL   81 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSC----CCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh----cCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHH
Confidence            456778888888765322    111       224566899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540          493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (562)
Q Consensus       493 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~  545 (562)
                      ..+|++++|+..|++|++++|++..+...++.+...+++..++. ..|.+...
T Consensus        82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~  133 (259)
T d1xnfa_          82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQ  133 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH-HHHHHHHh
Confidence            99999999999999999999999999999998887777665543 35555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.6e-11  Score=120.33  Aligned_cols=82  Identities=12%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 008540          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD------LDLAEFDIKKALEIDPDNRDVKLE  521 (562)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~------~~~A~~~~~~al~l~p~~~~~~~~  521 (562)
                      ..+|+|+|.++.++++|++|+.+|+++|+++|.|..||+++|.++..++.      +++|++.+.+|++++|+|..++..
T Consensus       146 ~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~  225 (315)
T d2h6fa1         146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  225 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHH
Confidence            45699999999999999999999999999999999999999999999887      689999999999999999999998


Q ss_pred             HHHHHHHH
Q 008540          522 YKTLKEKM  529 (562)
Q Consensus       522 l~~l~~~~  529 (562)
                      ++.+....
T Consensus       226 l~~ll~~~  233 (315)
T d2h6fa1         226 LKGILQDR  233 (315)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHhc
Confidence            88775443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.8e-11  Score=116.32  Aligned_cols=111  Identities=14%  Similarity=0.156  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +.+.|+.+|+.|+|++|+..|+++++..|.+.               .+++++|.+|.++|+|++|+..++++++.+|++
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   66 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNT---------------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL   66 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            35689999999999999999999999887643               237899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      +.+++++|.+|..+|++++|+..+.+++..+|.+............
T Consensus        67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (388)
T d1w3ba_          67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999776665554433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.5e-11  Score=93.45  Aligned_cols=80  Identities=25%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~  523 (562)
                      ++++|..++++|+|.+|+.++++|+++.|.+       ..+|+++|.||.++|++++|+..|++|++++|+++.+...+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            5699999999999999999999999886543       678999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 008540          524 TLKEKMK  530 (562)
Q Consensus       524 ~l~~~~~  530 (562)
                      .+++.+.
T Consensus        88 ~~~~~l~   94 (95)
T d1tjca_          88 YFEYIMA   94 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            7766553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.2e-10  Score=94.56  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=85.8

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +.+.|..++++|+|++|+..|+++|+++|+++.+|+.+|.||..+|++++|+.+|+++++++|++..+...++.+...+.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhcc
Q 008540          531 EYNKKEAKFYGNMFA  545 (562)
Q Consensus       531 ~~~~~~~~~~~~~f~  545 (562)
                      ..+++.. .|.+...
T Consensus        86 ~~~~A~~-~~~~a~~   99 (117)
T d1elwa_          86 RFEEAKR-TYEEGLK   99 (117)
T ss_dssp             CHHHHHH-HHHHHHT
T ss_pred             CHHHHHH-HHHHHHH
Confidence            8876654 5555544

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=7e-11  Score=94.93  Aligned_cols=88  Identities=26%  Similarity=0.501  Sum_probs=77.3

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      +.++.||.|+|+|+++. ||+.+++...  ..+.|.+|.+.++|||+++|.||++|+++.|.+.....|.....     +
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l-----a   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K   84 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT-----T
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh-----C
Confidence            46788999999999975 8998876543  56999999999999999999999999999999999999976664     6


Q ss_pred             CCcEEEEEEEeEeeec
Q 008540          131 NATLQFDVELLSWTSV  146 (562)
Q Consensus       131 ~~~l~~~vel~~~~~~  146 (562)
                      +..+.|.|+|.++...
T Consensus        85 GK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          85 GKAAKFAINLKKVEER  100 (106)
T ss_dssp             TCCEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEeccc
Confidence            7999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.8e-10  Score=104.20  Aligned_cols=93  Identities=16%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +.+.|.++++.|+|++|+..|++||+++|+++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            55889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhhc
Q 008540          531 EYNKKEAKFYGNMF  544 (562)
Q Consensus       531 ~~~~~~~~~~~~~f  544 (562)
                      +..++.. .|++..
T Consensus        87 ~~~~A~~-~~~~al   99 (201)
T d2c2la1          87 SYDEAIA-NLQRAY   99 (201)
T ss_dssp             CHHHHHH-HHHHHH
T ss_pred             CHHHHHH-HHHHHH
Confidence            8776653 555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.1e-10  Score=99.04  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +..+|.+|++.|+|++|+.+++++++++|++..+|+++|.||+.+|++++|+.+|++|++++|++..+...++.+...++
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHHHHhhc
Q 008540          531 EYNKKEAKFYGNMF  544 (562)
Q Consensus       531 ~~~~~~~~~~~~~f  544 (562)
                      +..++.. .|.+..
T Consensus        93 ~~~eA~~-~~~~a~  105 (159)
T d1a17a_          93 KFRAALR-DYETVV  105 (159)
T ss_dssp             CHHHHHH-HHHHHH
T ss_pred             CHHHHHH-HHHHHH
Confidence            7665543 444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-10  Score=112.18  Aligned_cols=100  Identities=17%  Similarity=0.078  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ..++|..+++.|+|++|+..|+++++..|....               +|.++|.|+..+|++++|+..+.++++++|++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME---------------AWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            457899999999999999999999998886543               38899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      ..+++++|.+|..+|++++|++.+++++.++|.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccccccccccccccchhhHHHhccchH
Confidence            99999999999999999999999999999998753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.2e-10  Score=95.13  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=71.1

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +-++|.++++.++|++|+.+|+++|+++|++..+++++|.||..+|+|++|+.+|++|++++|++......+..+...+.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999988765555554443333

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.02  E-value=8.9e-11  Score=95.70  Aligned_cols=88  Identities=23%  Similarity=0.492  Sum_probs=77.6

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (562)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~  130 (562)
                      ..++.||.|+|+|+++. ||+.++....  ..+.|.+|.+.++|||+++|.||++|++++|.++....|.....     +
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----a   93 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K   93 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----C
Confidence            35789999999999986 8998877643  67999999999999999999999999999999999999987665     6


Q ss_pred             CCcEEEEEEEeEeeec
Q 008540          131 NATLQFDVELLSWTSV  146 (562)
Q Consensus       131 ~~~l~~~vel~~~~~~  146 (562)
                      |.++.|.|+|.++...
T Consensus        94 Gk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          94 GKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             SCEEEECCCEEEEEEE
T ss_pred             CCeEEEEEEEEEEEec
Confidence            7999999999998863

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.81  E-value=4.3e-09  Score=92.57  Aligned_cols=92  Identities=15%  Similarity=0.038  Sum_probs=81.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+.++|.++++.|+|++|+..|++|+++.|...               .+|+++|.+|.++++|++|+.++++++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---------------~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT---------------KALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh---------------hHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            34566778899999999999999999999999987644               348999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008540          476 DLDSRNVKALYRRAQAYIQMADLDLAE  502 (562)
Q Consensus       476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~  502 (562)
                      +++|+|..++..++.++..+....++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=2e-08  Score=96.38  Aligned_cols=143  Identities=13%  Similarity=0.050  Sum_probs=105.0

Q ss_pred             HHHH-HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH
Q 008540          393 EEKI-EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (562)
Q Consensus       393 ~e~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (562)
                      ..+. +.+..+.+.|+.|...++|++|+..|.+|+++.......         .....+|.|+|.||.+++++++|+.++
T Consensus        30 ~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            3344 346678899999999999999999999999987653321         224567889999999999999999999


Q ss_pred             HHHHhcCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHH
Q 008540          472 TKVLDLDSRN------VKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAK  538 (562)
Q Consensus       472 ~~al~~~p~~------~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~  538 (562)
                      ++++++.+.+      ..++.++|.+|.. ++++++|++.|++|+++.+.+      ..+...++.+...+..+.++. .
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~-~  179 (290)
T d1qqea_         101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-D  179 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred             HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH-H
Confidence            9999876544      6788888988855 799999999999998874332      233455566666666555443 3


Q ss_pred             HHHhhcc
Q 008540          539 FYGNMFA  545 (562)
Q Consensus       539 ~~~~~f~  545 (562)
                      .|.+...
T Consensus       180 ~~~~~~~  186 (290)
T d1qqea_         180 IYSKLIK  186 (290)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.3e-09  Score=108.72  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +...|..+.+.+++..|+..|.+++...+                 ..++.++|.++..+++|++|+.+|.+|++++|++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC-----------------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             --------------------CCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            34444455555555555555555544332                 3458899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  529 (562)
                      ..+|+++|.+|...|++.+|+.+|.+|+.++|..+.++..|..+..+.
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988775443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.78  E-value=1.5e-08  Score=88.90  Aligned_cols=88  Identities=14%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+.++|.++++.++|.+|+..|++++.+.|.+.               .+++++|.||..+|+|++|+.+|.+++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~---------------~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455677899999999999999999999999988644               34999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHH
Q 008540          478 DSRNVKALYRRAQAYIQMADLDL  500 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~~~~  500 (562)
                      +|+|..++..++.+...++++.+
T Consensus       128 ~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         128 NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999988877776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.3e-08  Score=89.50  Aligned_cols=89  Identities=17%  Similarity=0.103  Sum_probs=79.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      +..+.++|.++++.|+|.+|+..|++||.+.|.+.               .+++++|.||..+|+|++|+.+|+++++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~---------------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccch---------------hhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            44567899999999999999999999999988654               348999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHH
Q 008540          479 SRNVKALYRRAQAYIQMADLDLAE  502 (562)
Q Consensus       479 p~~~ka~~~~a~a~~~l~~~~~A~  502 (562)
                      |+|..+...++.++..+.+..+..
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887776554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.67  E-value=2.1e-08  Score=86.52  Aligned_cols=85  Identities=11%  Similarity=0.068  Sum_probs=75.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (562)
Q Consensus       398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (562)
                      .+..+.++|.++++.++|.+|+..|++|+.+.|.+.               .+|+++|.||..+|+|++|+.++++++++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~---------------ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---------------KALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhh---------------hhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677899999999999999999999999987643               35999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q 008540          478 DSRNVKALYRRAQAYIQMAD  497 (562)
Q Consensus       478 ~p~~~ka~~~~a~a~~~l~~  497 (562)
                      +|+|..+...++.+..++.+
T Consensus       131 ~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999998888776643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1e-07  Score=77.27  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             HHhcHHHHHhhcc---CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLK---DYKQAEKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       450 ~~~nla~~~~k~~---~~~~A~~~~~~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..+|.|.|..+..   +..+|+..++.+++.+|.+ ..++|.+|.+|+++|+|++|+.+++++|+++|+|..++.+...+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            3578888888654   5679999999999999876 47999999999999999999999999999999999988888877


Q ss_pred             HHHHHH
Q 008540          526 KEKMKE  531 (562)
Q Consensus       526 ~~~~~~  531 (562)
                      ..++.+
T Consensus       117 e~~~~k  122 (124)
T d2pqrb1         117 EDKIQK  122 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=6.8e-08  Score=82.34  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----------ADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l----------~~~~~A~~~~~~al~l~p~~~~~~~~l~~l  525 (562)
                      ..+.+++.|++|+..++++++++|+|+.+++++|.+|..+          +.+++|+..|++|++++|++..+...++.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456788899999999999999999999999999999865          456899999999999999999999999988


Q ss_pred             HHHHH
Q 008540          526 KEKMK  530 (562)
Q Consensus       526 ~~~~~  530 (562)
                      ...+.
T Consensus        85 y~~~g   89 (145)
T d1zu2a1          85 YTSFA   89 (145)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            76654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=2.2e-07  Score=88.92  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=94.0

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKV  474 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~a  474 (562)
                      ...+..+.+.|+.|.+.|++++|+..|++++++.+.....         .....++.++|.+|.. +++|++|+..++++
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            3457788999999999999999999999999998865432         2234557888988855 69999999999999


Q ss_pred             HhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540          475 LDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (562)
Q Consensus       475 l~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~  516 (562)
                      +++.+.      ...++.++|.+|..+|+|++|+..|++++.+.+.+.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            987432      256789999999999999999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1.7e-07  Score=91.43  Aligned_cols=117  Identities=13%  Similarity=0.037  Sum_probs=99.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHHHHHHHHHHHh
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLD  476 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~  476 (562)
                      ...+...+..+...+++.+|+.+|+++++..|.+...               +++++.++..++  ++++|+..|.++++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT---------------WHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHH---------------HHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            3445566677778888999999999999988865543               778888877766  49999999999999


Q ss_pred             cCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          477 LDSRNVKAL-YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       477 ~~p~~~ka~-~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      .+|.+..++ +.+|.++...+++++|+..++++++++|++..++..++.+...+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999998886 577899999999999999999999999999999998888866654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=1.3e-07  Score=92.40  Aligned_cols=103  Identities=7%  Similarity=-0.137  Sum_probs=83.5

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (562)
Q Consensus       410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a  489 (562)
                      ...+.+..|...|.+++...+.....               +.+++.++..++++.+|+..+.+++..+|.+..+++.+|
T Consensus       219 ~~l~~~~~a~~~~~~~l~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  283 (334)
T d1dcea1         219 FFTDPNDQSAWFYHRWLLGRAEPLFR---------------CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM  283 (334)
T ss_dssp             HHHCSSCSHHHHHHHHHHSCCCCSSS---------------CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcchhHHHHHHHHHHHhCcchhhH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence            33344445555555555544443333               568899999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       490 ~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      .+|..+|++++|+++|++|+++||.+...+..|+....
T Consensus       284 ~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            99999999999999999999999999888887765543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.1e-07  Score=78.45  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Q 008540          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNR--DVKLEYKTLK  526 (562)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~p~~~--~~~~~l~~l~  526 (562)
                      .|++..+..+++|++|.+.|+++|.++|+++.++|++|.|+.+.+   ++++|+..|++++..+|.+.  ++...++.+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            467788889999999999999999999999999999999998754   55679999999999998763  5788899999


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 008540          527 EKMKEYNKKEAKFYGNMFAK  546 (562)
Q Consensus       527 ~~~~~~~~~~~~~~~~~f~~  546 (562)
                      ..++++.++. +.|.+.+..
T Consensus        83 ~~~g~~~~A~-~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKAL-KYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHhhhHHHH-HHHHHHHHh
Confidence            9888887665 466666653

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=4.3e-07  Score=72.22  Aligned_cols=85  Identities=15%  Similarity=0.257  Sum_probs=68.7

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008540          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (562)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~  244 (562)
                      ..+..||.|+++|++.. +|+.+...  ....+.+|.+.+++||+++|.||+.|+++.|.+.-...|...          
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~----------   81 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE----------   81 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCT----------
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCch----------
Confidence            34568999999999876 77777643  678999999999999999999999999999999522345322          


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008540          245 VPPNATLQIALELVSWKT  262 (562)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (562)
                      -.++.++.|.|.|.++..
T Consensus        82 ~laGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          82 NLKGKAAKFAINLKKVEE   99 (106)
T ss_dssp             TTTTCCEEEEEEEEEEEC
T ss_pred             hhCCCEEEEEEEEEEecc
Confidence            247889999999998754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=6.1e-06  Score=79.23  Aligned_cols=106  Identities=9%  Similarity=0.005  Sum_probs=89.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (562)
Q Consensus       397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (562)
                      ..++...-+|..++..|++++|+..|++|+...|....          ..+..+++++|.+|..+|++++|+..+.++++
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556666899999999999999999999998775431          22455688999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (562)
Q Consensus       477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  512 (562)
                      +.+..      ..+++.++.+|...+++..|...+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            75432      5688899999999999999999999999764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.21  E-value=3.3e-07  Score=86.23  Aligned_cols=92  Identities=12%  Similarity=0.012  Sum_probs=78.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (562)
Q Consensus       405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (562)
                      ++..+++.|++++|+..|+++++..|.+...               +.+++.++...|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~a---------------r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            3567889999999999999999998876544               8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540          485 LYRRAQAYIQMADLDLAEFDIKKALEI  511 (562)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l  511 (562)
                      +..++.++...+..+++...+.++..+
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhcc
Confidence            999999888888777776655544333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.2e-06  Score=84.35  Aligned_cols=104  Identities=19%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh--
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--  476 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--  476 (562)
                      +..+...|..+...++++.|...|.+++...+.....           ....+.++|.+++.+|++++|+..+++++.  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-----------LQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4456678888999999999999999988776543322           233467899999999999999999999984  


Q ss_pred             ----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540          477 ----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (562)
Q Consensus       477 ----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p  513 (562)
                          ..|....+++.+|.+|..+|++++|++.|++|+++.+
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                3466788999999999999999999999999999854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.5e-07  Score=93.76  Aligned_cols=84  Identities=11%  Similarity=-0.063  Sum_probs=56.9

Q ss_pred             HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (562)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  530 (562)
                      +.|+|.++.+.+++..|+..+.+++..++  ..+++++|.++..+++|++|+.+|++|++++|++..+...|+.+.....
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             --------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            78999999999999999999999998876  4799999999999999999999999999999999999999999987766


Q ss_pred             HHHHHH
Q 008540          531 EYNKKE  536 (562)
Q Consensus       531 ~~~~~~  536 (562)
                      +..++-
T Consensus       201 ~~~~A~  206 (497)
T d1ya0a1         201 DHLTTI  206 (497)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            655443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.17  E-value=4e-06  Score=78.54  Aligned_cols=72  Identities=11%  Similarity=0.112  Sum_probs=66.7

Q ss_pred             HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (562)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  527 (562)
                      .-.++.|++++|+..++++++.+|+|..++..+|.+|+.+|++++|+..|+++++++|++..+...++.+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999988888876643

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.17  E-value=7.1e-07  Score=71.97  Aligned_cols=84  Identities=11%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (562)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i  245 (562)
                      .+..||.|+++|.+.. +|+.+...  ..+.+.+|.+.++++|+++|.||+.|+++.|.++-...|....          
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~----------   91 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----------   91 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----------
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCCccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc----------
Confidence            4678999999999997 56666654  6788999999999999999999999999999886222454322          


Q ss_pred             CCCCeEEEEEEeecccc
Q 008540          246 PPNATLQIALELVSWKT  262 (562)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (562)
                      -++.++.|.|.+.++..
T Consensus        92 laGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          92 LKGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             TSSCEEEECCCEEEEEE
T ss_pred             cCCCeEEEEEEEEEEEe
Confidence            36788999999988653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.14  E-value=3.3e-06  Score=72.38  Aligned_cols=81  Identities=16%  Similarity=0.080  Sum_probs=66.0

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (562)
                      ...+..+.+.|..+++.|+|+.|+..|++++.+.+.......+.    ......+++|+|.+|.++|++++|+.+|++++
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999999988755432211    12234568999999999999999999999999


Q ss_pred             hcCCC
Q 008540          476 DLDSR  480 (562)
Q Consensus       476 ~~~p~  480 (562)
                      ++.|.
T Consensus       128 ~l~~~  132 (156)
T d2hr2a1         128 EMIEE  132 (156)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            98653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=6.3e-06  Score=72.34  Aligned_cols=93  Identities=12%  Similarity=-0.003  Sum_probs=78.8

Q ss_pred             HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----------------------VKALYRRAQAYIQMADLDLAEFDIKK  507 (562)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~  507 (562)
                      .+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|+.++++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            36789999999999999999999999987643                      36889999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540          508 ALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (562)
Q Consensus       508 al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (562)
                      ++.++|.+..++..+..+.....+..+..+ .|..+
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~-~y~~~  127 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALG-AYRRV  127 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence            999999999999998888777766655442 44443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=2.8e-05  Score=74.36  Aligned_cols=131  Identities=10%  Similarity=0.008  Sum_probs=88.7

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHh-hccCHHHHHHHHHHHHhcCCCC
Q 008540          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL-KLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      ...++...+.++++.|...|.+|++..|....               .+.+.|.... ..++.+.|...+++++...|++
T Consensus       138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         138 IQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence            34445555556666666666666665554332               2445555433 4578999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE  549 (562)
Q Consensus       482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~  549 (562)
                      +..+...+..+...|+++.|+..|++|+...|.++    .+...+.......+..... .+.++++...+..
T Consensus       203 ~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~-~~~~~r~~~~~~~  273 (308)
T d2onda1         203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI-LKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHCcc
Confidence            99999999999999999999999999999877543    3555555555444433332 3466666555543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=7.6e-05  Score=59.92  Aligned_cols=78  Identities=14%  Similarity=0.080  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540          402 KKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (562)
Q Consensus       402 ~~~~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (562)
                      ..+.|..+.+..   +.++|+..++.+++..|..              +..+++++|.+|+++|+|++|+.+|+++|+++
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            345556666543   4678888888887654421              23568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 008540          479 SRNVKALYRRAQAYI  493 (562)
Q Consensus       479 p~~~ka~~~~a~a~~  493 (562)
                      |+|..|..-+-.+..
T Consensus       104 P~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1         104 RNNKQVGALKSMVED  118 (124)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999998876655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=0.00011  Score=69.94  Aligned_cols=131  Identities=11%  Similarity=0.054  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (562)
Q Consensus       402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (562)
                      +...+..+...|+++.|...|++++...+.+..              .++..++....+.++++.|+..+.+++...|.+
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--------------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH--------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            345566777889999999999999987664431              236677888889999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540          482 VKALYRRAQAYI-QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (562)
Q Consensus       482 ~ka~~~~a~a~~-~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~  547 (562)
                      ...+...|.... ..++.+.|...|+++++..|++..++..+..+........ +.+.+|.+.....
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~-~aR~~fe~ai~~~  233 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN-NTRVLFERVLTSG  233 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhC
Confidence            999999888754 4689999999999999999999998888888766665544 3456777766554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.28  E-value=0.0012  Score=60.70  Aligned_cols=98  Identities=19%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh----ccCHHHHHHHHHHH
Q 008540          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKV  474 (562)
Q Consensus       399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~a  474 (562)
                      +..+...|..++++++|.+|+..|++|.+...                 ..++++||.+|..    ..++..|..++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-----------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-----------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            34678899999999999999999999986532                 1237789999987    77999999999998


Q ss_pred             HhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 008540          475 LDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDN  515 (562)
Q Consensus       475 l~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~  515 (562)
                      ...  .++.+.+++|.++..    ..+.+.|...++++....+..
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            865  578899999988876    468899999999998775543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.0013  Score=53.86  Aligned_cols=59  Identities=14%  Similarity=0.024  Sum_probs=32.0

Q ss_pred             HhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008540          451 NLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEI  511 (562)
Q Consensus       451 ~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l  511 (562)
                      ++++|.+|..    ..++.+|+.+++++.+.  .++.+.+++|.+|..    ..++++|+.+|++|.++
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            4455555544    34555566666655543  345555666655555    34555566666655554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.12  E-value=0.0013  Score=53.80  Aligned_cols=93  Identities=17%  Similarity=0.050  Sum_probs=72.7

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (562)
Q Consensus       413 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~  492 (562)
                      +++++|+..|++|.+...  ..               ++++++  .....++++|+..++++.+.  +++.+++++|..|
T Consensus         7 kd~~~A~~~~~kaa~~g~--~~---------------a~~~l~--~~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE--MF---------------GCLSLV--SNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TT---------------HHHHHH--TCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC--hh---------------hhhhhc--cccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            588999999999987532  11               134454  34567899999999999875  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540          493 IQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (562)
Q Consensus       493 ~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  528 (562)
                      ..    ..++++|+++|+++.+.  .++.+...|+.+...
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            87    56799999999999876  466677777776544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.07  E-value=0.00076  Score=62.10  Aligned_cols=74  Identities=16%  Similarity=0.100  Sum_probs=60.7

Q ss_pred             HHHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVK  519 (562)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~  519 (562)
                      ..+++++|.+|..    .+++..|+.+++++.+.  +++.+++++|.+|..    ..++++|+.+|++|..+...  .+.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~--~A~  253 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK--GAC  253 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH--HHH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH--HHH
Confidence            3457899999987    77999999999999887  579999999999987    45899999999999988643  355


Q ss_pred             HHHHHH
Q 008540          520 LEYKTL  525 (562)
Q Consensus       520 ~~l~~l  525 (562)
                      ..|+.|
T Consensus       254 ~~l~~l  259 (265)
T d1ouva_         254 DILKQL  259 (265)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            555544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.95  E-value=0.71  Score=34.09  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (562)
Q Consensus       394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~  431 (562)
                      ..+..|..+..++..+-+.|+|..|+.+|.+|++++-.
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34667888899999999999999999999999998764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.19  E-value=0.51  Score=33.38  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=32.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (562)
Q Consensus       396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~  432 (562)
                      ++.|..+-.++..+.+.|.|++|+.++++|..++...
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            5778888899999999999999999999999987653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.00  E-value=1.2  Score=41.45  Aligned_cols=47  Identities=17%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (562)
Q Consensus       485 ~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  531 (562)
                      +--.-..|...|.+++.+..|+.++.+++.+..+...|..+..+...
T Consensus       102 l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~  148 (336)
T d1b89a_         102 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  148 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh
Confidence            34456677778888888888888888778887777777666555443