Citrus Sinensis ID: 008550
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VY89 | 558 | Anaphase-promoting comple | yes | no | 0.994 | 1.0 | 0.750 | 0.0 | |
| Q9UJX3 | 599 | Anaphase-promoting comple | yes | no | 0.896 | 0.839 | 0.310 | 2e-61 | |
| Q9WVM3 | 565 | Anaphase-promoting comple | yes | no | 0.896 | 0.890 | 0.308 | 6e-60 | |
| Q54D58 | 580 | Anaphase-promoting comple | yes | no | 0.912 | 0.882 | 0.290 | 3e-58 | |
| Q9UJX2 | 597 | Cell division cycle prote | no | no | 0.438 | 0.412 | 0.272 | 2e-14 | |
| A1A4R8 | 597 | Cell division cycle prote | no | no | 0.438 | 0.412 | 0.272 | 2e-14 | |
| Q8BGZ4 | 597 | Cell division cycle prote | no | no | 0.543 | 0.510 | 0.255 | 4e-14 | |
| O94556 | 565 | Anaphase-promoting comple | yes | no | 0.655 | 0.651 | 0.218 | 1e-13 | |
| Q9STS3 | 579 | Anaphase-promoting comple | no | no | 0.456 | 0.442 | 0.251 | 2e-11 | |
| P38042 | 758 | Anaphase-promoting comple | yes | no | 0.497 | 0.368 | 0.225 | 6e-09 |
| >sp|Q8VY89|APC7_ARATH Anaphase-promoting complex subunit 7 OS=Arabidopsis thaliana GN=APC7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/561 (75%), Positives = 484/561 (86%), Gaps = 3/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPKEQI LI+ GLYDSA+MLGCFLVSS ++ ETSP LKAENLI+LGD+LF RE+R
Sbjct: 1 MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQAL +Y +PKQ+S SRSS + + SS N+ ++SAINENEV++KIAS HFA
Sbjct: 61 RAIHTYKQALHHYTRIPKQSSGISRSS-LSLSTRSSVNASSISAINENEVRFKIASSHFA 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L ETKAAI EME + K R+L+M++LMAKL+RNS +NRGA+A YKECLR CP+ +EA+
Sbjct: 120 LNETKAAIAEMESV--KTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIG 177
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG + KDIIS F QT NRS + D +D +RWL RYVEAQCC+AS+ YKG LELFAE
Sbjct: 178 LAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAE 237
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNN+H+L E AKV+AIIGKNDEAI+ FEKVRSIDPY +T MDEYAMLL++KCDYS
Sbjct: 238 LLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYS 297
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
+L+KLVHDLLS+D +R EVFVALSVLWERKD R ALSYAEKSIR+DERHIPGYIMKGNLL
Sbjct: 298 RLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLL 357
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L KRPEAA IAFR AQ LR DLRSYQGLVHSYL F K KEALY AREAM AMPQSAKAL
Sbjct: 358 LQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKAL 417
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHA +SGREKAKKFYES LRLEPGYLGA LALAELH++EGRNGDAVSLLERYLK
Sbjct: 418 KLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLK 477
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
D+ADDSLHVKLAQVFAATNMLQ++LSH++AALRIN QNEAAKKGL+RLEKQMKG+DPDA
Sbjct: 478 DYADDSLHVKLAQVFAATNMLQDSLSHFQAALRINPQNEAAKKGLDRLEKQMKGIDPDAT 537
Query: 541 EEDEENEVEDAEGDQEETDLL 561
+E++EN+VED +GD EE +L+
Sbjct: 538 DENDENDVEDVDGDTEEAELM 558
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UJX3|APC7_HUMAN Anaphase-promoting complex subunit 7 OS=Homo sapiens GN=ANAPC7 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 164/528 (31%), Positives = 268/528 (50%), Gaps = 25/528 (4%)
Query: 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97
SP K + L+ DSLF D+EYR A+ Y ALQ K + K +S+ ST N +S+P
Sbjct: 72 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK----TSKVRPSTGNSASTP 127
Query: 98 NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN 157
S + + E EVKYK+A C+ L + K AI ++GIPS+ R ++++++A LY+ +
Sbjct: 128 QSQCLPS--EIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQE 185
Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217
R +V YKE LR CP ++AI L L ++ S+ T N P +LD WL
Sbjct: 186 RPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASM---TMNVIQTVP--NLD---WLS 237
Query: 218 RYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275
+++A + + D + L ++ +N+ +L +A + G N ++L FE+
Sbjct: 238 VWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQA 297
Query: 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWERKDER 333
+ +DPY++ MD Y LL + + L L +I + P V + ++ R
Sbjct: 298 QMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSR 357
Query: 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHS 392
AL K+I+++ + ++KG L +M R + A+I FR A L P L Y+GL+
Sbjct: 358 -ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIEC 416
Query: 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452
YL + ++EA+ A K + +A+ L L+ V + +EKAK + AL P Y+
Sbjct: 417 YLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYI 476
Query: 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
A + AEL E + D ++LL L + +D LH L A N QEA+ Y AL
Sbjct: 477 KAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIAL 536
Query: 513 RINSQNEAAKKGLERLEKQMKGVDPDAPEEDEENEVEDAEGDQEETDL 560
++ ++ + +G++++EK+ D +E +V+D EG EE DL
Sbjct: 537 SLDPNDQKSLEGMQKMEKEESPTDA-----TQEEDVDDMEGSGEEGDL 579
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Homo sapiens (taxid: 9606) |
| >sp|Q9WVM3|APC7_MOUSE Anaphase-promoting complex subunit 7 OS=Mus musculus GN=Anapc7 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 267/528 (50%), Gaps = 25/528 (4%)
Query: 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97
SP K + L+ DSLF D+EYR A+ Y ALQ K + K +S+ ST N +S+P
Sbjct: 38 SPSQKYQLLVYHADSLFHDKEYRNAVSKYAMALQQKKALSK----TSKVRPSTGNSASTP 93
Query: 98 NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN 157
S + + E EVKYK+A C+ L K AI ++GIPS+ R ++++++A LY+ +
Sbjct: 94 QSQCLPS--EIEVKYKMAECYTMLKLDKDAIAVLDGIPSRQRTPKINMMLANLYKKAGQE 151
Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217
R +V YKE LR CP ++AI L L ++ S+ T N P +LD WL
Sbjct: 152 RPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASM---TMNVIQTVP--NLD---WLS 203
Query: 218 RYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275
+++A + + D + L ++ +N+ +L +A + G + ++L FE+
Sbjct: 204 VWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDSKNSVLKFEQA 263
Query: 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWERKDER 333
+ +DPY++ MD Y LL + + L L +I + P V + ++ R
Sbjct: 264 QMLDPYLIRGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSR 323
Query: 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHS 392
AL K+I+++ + ++KG L +M R + A+I FR A L P L Y+GL+
Sbjct: 324 -ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIEC 382
Query: 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452
YL + ++EA+ A K + +A+ L L+ V + +EKAK + AL P Y+
Sbjct: 383 YLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALAQRPDYV 442
Query: 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
A + AEL E + D ++LL L + +D LH L A N QEA+ Y AL
Sbjct: 443 KAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIAL 502
Query: 513 RINSQNEAAKKGLERLEKQMKGVDPDAPEEDEENEVEDAEGDQEETDL 560
++ ++ + +G++++EK+ D +E +V+D EG EE DL
Sbjct: 503 SLDPNDQKSLEGMQKMEKEESPTDA-----TQEEDVDDMEGSGEEGDL 545
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Mus musculus (taxid: 10090) |
| >sp|Q54D58|APC7_DICDI Anaphase-promoting complex subunit 7 OS=Dictyostelium discoideum GN=anapc7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 157/540 (29%), Positives = 284/540 (52%), Gaps = 28/540 (5%)
Query: 11 LIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQAL 70
L++ + SA+ LG F++S N + +PH + + GDSLF E+ R++ +KQ+L
Sbjct: 20 LVESKQFSSAEFLGNFVISVP--NQQKTPHQNIISFSLFGDSLFGKNEFVRSLKYFKQSL 77
Query: 71 QYYKIVPKQNSTSSRSSLSTSNRSSSPN-SFNVSAINENEVKYKIASCHFALGETKAAIV 129
I+ K + + ++ + + ++ N F E E+KYKI+ C+ + AI
Sbjct: 78 D---ILFKVYNNPNNNNNNNNKQADFDNKQF------EYELKYKISLCYIKINRNNLAIS 128
Query: 130 EMEGIPSKARNLQMSLLMAKLYRN--SRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187
+E IP +R L L +A+LY++ ++ + YKE ++ CP +EAI +L E+G
Sbjct: 129 YLESIPFSSRGLDTHLTIARLYKDIGKEKSKECIISYKEVIKLCPLCLEAINSLKEMGEN 188
Query: 188 PKDI----ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243
+ I+ F Q N L W+ +Q + N + L L ++
Sbjct: 189 VDQVLIPSINKFQQKNNSFNSNNIIDLS---WISLLSMSQYEMKRNQPEKSLILLKKVES 245
Query: 244 RFPNNIHILLEMAKVDAIIGKNDEAILN----FEKVRSIDPYIMTYMDEYAMLLKVKCDY 299
+F N+++L ++A + + ++ +I+N F+K+R +DPY + MD + LLK +
Sbjct: 246 KFSTNLYVLEKLAL--SYLYHDEPSIINTFNIFQKIRLLDPYYIGSMDIFCSLLKRRSLQ 303
Query: 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGN 358
+L+K+ +DL++ +P E + ++++ + K+ +L +++I I E H + +KG
Sbjct: 304 FELNKVCNDLVASNPYCAETWTSVALFYFLKENVEKSLENVDRAISIKESHEFAHSLKGE 363
Query: 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418
+LLS+ P A+ + A +L ++ + + LV +L +++KEAL A P +K
Sbjct: 364 ILLSLDEPREALPSLERAFQLSKNILTARELVRCHLILNQMKEALVVAETINNLSPDYSK 423
Query: 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478
+ L+G V A+ RE+A+K AL L P L L++L+V+EGR +A+ +L
Sbjct: 424 TMALLGMVLANQPEEREEARKILTKALTLSPHCTDTVLTLSKLNVVEGRFQEAIDILNSQ 483
Query: 479 LKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPD 538
L+ D +H ++A V+ + ++A+ HY +AL IN Q E A +G+ RLE MKG+DPD
Sbjct: 484 LEYQETDLMHTEIAGVYLTKDYHEDAMIHYNSALEINPQYEPASRGIARLELIMKGIDPD 543
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9UJX2|CDC23_HUMAN Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 11/257 (4%)
Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
L+L E LQ++ N I +I+ ++A I D+A+ F ++R DPY + M
Sbjct: 241 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300
Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGALSYAEKSIRI 345
D ++ LL V+ S+LS L H+L ID R E + + R A Y ++++++
Sbjct: 301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360
Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEALY 404
+ R++ + + G+ + MK AA+ A+R A E+ + D R++ GL +Y LY
Sbjct: 361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420
Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
R A + P ++ L +G+ + + +AKK Y A + A + LA+LH
Sbjct: 421 YYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQ 479
Query: 465 EGRNGDAVSLLERYLKD 481
+ A +Y++D
Sbjct: 480 LTESEQAAQCYIKYIQD 496
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Homo sapiens (taxid: 9606) |
| >sp|A1A4R8|CDC23_BOVIN Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 11/257 (4%)
Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
L+L E LQ++ N I +I+ ++A I D+A+ F ++R DPY + M
Sbjct: 241 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300
Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGALSYAEKSIRI 345
D ++ LL V+ S+LS L H+L ID R E + + R A Y ++++++
Sbjct: 301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360
Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEALY 404
+ R++ + + G+ + MK AA+ A+R A E+ + D R++ GL +Y LY
Sbjct: 361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420
Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
R A + P ++ L +G+ + + +AKK Y A + A + LA+LH
Sbjct: 421 YYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQ 479
Query: 465 EGRNGDAVSLLERYLKD 481
+ A +Y++D
Sbjct: 480 LTESEQAAQCYIKYIQD 496
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Bos taurus (taxid: 9913) |
| >sp|Q8BGZ4|CDC23_MOUSE Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 150/329 (45%), Gaps = 24/329 (7%)
Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
L+L E LQ++ + I +I+ ++A I D+A+ F ++R DPY + M
Sbjct: 241 LQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300
Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGALSYAEKSIRI 345
D ++ LL V+ S+LS L H+L ID R E + + R A Y ++++++
Sbjct: 301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 360
Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEALY 404
+ R++ + + G+ + MK AA+ A+R A E+ + D R++ GL +Y LY
Sbjct: 361 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 420
Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
R A + P ++ L +G+ + + +AKK Y A + A + LA+LH
Sbjct: 421 YYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCYWRAYAVGDVEKKALVKLAKLHEQ 479
Query: 465 EGRNGDAVSLLERYLKD---WADDSLHVK-------LAQVFAATNMLQEALSHYEAALRI 514
+ A +Y++D + H++ LAQ + + EA + +
Sbjct: 480 LTESEQAAQCYIKYIQDIYSCGETVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAF 539
Query: 515 NSQNEAAKKGLER-LEKQMKGVDP--DAP 540
N E K L + L+ + +G P D P
Sbjct: 540 NDTREEGKALLRQILQLRNQGETPTSDTP 568
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Mus musculus (taxid: 10090) |
| >sp|O94556|APC8_SCHPO Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 181/411 (44%), Gaps = 43/411 (10%)
Query: 41 LKAENLIILGDSLFRDREYRRAIHTYKQA-------LQYYK--IVPKQNSTSSRSSLSTS 91
++ +N+ +L S F +E+ RA +T + L+ Y + ++ S +L +
Sbjct: 85 VEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNT 144
Query: 92 NRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLY 151
N + S + I+E + S H+ G ++ + G+ +Y
Sbjct: 145 NLTLSSTNREFYYISE-----VLESLHYQ-GNKDPYLLYLSGV---------------VY 183
Query: 152 RNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211
R + + A+ K C+ PFF A L+ + + + ++ +Q P+ ++
Sbjct: 184 RKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMTKIFYVY 243
Query: 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271
+S LH+ + S+ Y+ E AE++ FPN+ ++ + A + DEA
Sbjct: 244 ASHELHQ-------VNSSAYEKLAE--AEII--FPNSRYLKTQRALLTYDSRDFDEAESL 292
Query: 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331
FE + + DPY + MD Y+ +L V + SKL L SID RPE + +
Sbjct: 293 FENILTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKFRPETCSIIGNYYSLLS 352
Query: 332 ER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGL 389
E A++Y +++++++ ++ + + G+ + +K AA+ ++R A ++ R D R++ GL
Sbjct: 353 EHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGL 412
Query: 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF 440
+Y ALY + A P + + +G+ + +E K +
Sbjct: 413 GQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCYEKIDRPQEAIKSY 463
|
Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Has a role in promoting metaphase to anaphase transition via the ubiquitination of specific mitotic substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9STS3|CDC23_ARATH Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 6/262 (2%)
Query: 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK 304
F + +I + AK + + D+ + FE++ DPY + MD Y+ +L K + LS
Sbjct: 267 FSFSNYIQAQTAKAQYSLREFDQVEIMFEELLRNDPYRVEDMDLYSNVLYAKEACAALSY 326
Query: 305 LVHDLLSIDPSRPEVFVALSVLWERKDER-GALSYAEKSIRIDERHIPGYIMKGNLLLSM 363
L H + D RPE + + K + A+ Y ++++++++++ + + G+ + M
Sbjct: 327 LAHKVFLTDKYRPESCCIIGNYYSLKGQHEKAVMYFRRALKLNKKYLSAWTLMGHEYVEM 386
Query: 364 KRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422
K AA+ A+R A ++ P D R++ GL +Y AL+ R+++ +P ++
Sbjct: 387 KNTPAAIDAYRRAVDINPTDYRAWYGLGQAYEMMGMPFYALHYFRKSIFFLPNDSRLWIA 446
Query: 423 VGDVHASNA-SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481
+ + + E+A K Y+ A+ A LA+LH GRN +A E+ L+
Sbjct: 447 MAKCYQTEQLYMLEEAIKCYKRAVNCTDTEGIALNQLAKLHQKLGRNEEAAYYFEKDLER 506
Query: 482 WADDSL---HVKLAQVFAATNM 500
+ L ++ A VF AT+
Sbjct: 507 MDAEGLEGPNMFEALVFLATHF 528
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Arabidopsis thaliana (taxid: 3702) |
| >sp|P38042|CDC27_YEAST Anaphase-promoting complex subunit CDC27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC27 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 5/284 (1%)
Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
L+++ K+ I D ++ F +++ + P + M+ ++ LL D K S L + L+
Sbjct: 475 LVQLGKLHFEIINYDMSLKYFNRLKDLQPARVKDMEIFSTLLWHLHDKVKSSNLANGLMD 534
Query: 312 IDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370
P++PE + + ++L +KD A+ EK+ ++D Y ++G+ S ++A
Sbjct: 535 TMPNKPETWCCIGNLLSLQKDHDAAIKAFEKATQLDPNFAYAYTLQGHEHSSNDSSDSAK 594
Query: 371 IAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429
+R A P +Y GL S ++ + +EAL +A P + + G
Sbjct: 595 TCYRKALACDPQHYNAYYGLGTSAMKLGQYEEALLYFEKARSINPVNVVLICCCGG-SLE 653
Query: 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLH 488
+EKA ++YE A L+P + + +L R A+ E +K DD + H
Sbjct: 654 KLGYKEKALQYYELACHLQPTSSLSKYKMGQLLYSMTRYNVALQTFEELVKLVPDDATAH 713
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQ-NEAAKKGLERLEKQ 531
L Q + ++A+ A+ ++ + N+ L++ Q
Sbjct: 714 YLLGQTYRIVGRKKDAIKELTVAMNLDPKGNQVIIDELQKCHMQ 757
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| 255551679 | 558 | anaphase promoting complex subunit, puta | 0.994 | 1.0 | 0.868 | 0.0 | |
| 225432356 | 560 | PREDICTED: anaphase-promoting complex su | 0.998 | 1.0 | 0.844 | 0.0 | |
| 224123146 | 559 | predicted protein [Populus trichocarpa] | 0.996 | 1.0 | 0.850 | 0.0 | |
| 224107381 | 559 | predicted protein [Populus trichocarpa] | 0.996 | 1.0 | 0.848 | 0.0 | |
| 449524842 | 560 | PREDICTED: LOW QUALITY PROTEIN: anaphase | 0.998 | 1.0 | 0.836 | 0.0 | |
| 356555540 | 560 | PREDICTED: anaphase-promoting complex su | 0.998 | 1.0 | 0.832 | 0.0 | |
| 356549081 | 560 | PREDICTED: anaphase-promoting complex su | 0.998 | 1.0 | 0.830 | 0.0 | |
| 449450662 | 560 | PREDICTED: LOW QUALITY PROTEIN: anaphase | 0.998 | 1.0 | 0.828 | 0.0 | |
| 357447381 | 560 | Anaphase-promoting complex subunit [Medi | 0.998 | 1.0 | 0.818 | 0.0 | |
| 30687770 | 558 | anaphase-promoting complex subunit 7 [Ar | 0.994 | 1.0 | 0.750 | 0.0 |
| >gi|255551679|ref|XP_002516885.1| anaphase promoting complex subunit, putative [Ricinus communis] gi|223543973|gb|EEF45499.1| anaphase promoting complex subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/561 (86%), Positives = 529/561 (94%), Gaps = 3/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
ME+PK+QITAL+D GLY SAQMLGCFLVSSS++N ETSPHLKAENLI LGD+LFR+RE+R
Sbjct: 1 MEIPKDQITALLDHGLYSSAQMLGCFLVSSSSVNPETSPHLKAENLIFLGDALFREREFR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQALQYYKI+PKQNSTSSR+ SNRSSSPNSFN S INENEVK+KIASC A
Sbjct: 61 RAIHTYKQALQYYKIIPKQNSTSSRT---LSNRSSSPNSFNFSPINENEVKFKIASCLSA 117
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L ET+AA+VEMEGIPSKAR LQMSLLMAKLYRNSRHNR A+AC+KECLRHCP+ IEAI A
Sbjct: 118 LNETRAALVEMEGIPSKARTLQMSLLMAKLYRNSRHNRFAIACFKECLRHCPYVIEAIIA 177
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG + KDIIS+F+Q N+SGRA FDH+DS+RWL RYVEAQCCIASNDYKGGLELF E
Sbjct: 178 LAELGVSAKDIISVFSQASNKSGRASFDHVDSNRWLQRYVEAQCCIASNDYKGGLELFGE 237
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNN+HILLE+AKV+AIIGKNDEAI+NFEKVRS+DPY++T MDEYAMLLK+K D+S
Sbjct: 238 LLQRFPNNVHILLEIAKVEAIIGKNDEAIMNFEKVRSLDPYVVTSMDEYAMLLKLKSDFS 297
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLLSIDP+RPEVFVALSVLWERKDERGAL+YAEKSIRID+RHIPGYIMKGNLL
Sbjct: 298 KLNKLVHDLLSIDPTRPEVFVALSVLWERKDERGALTYAEKSIRIDDRHIPGYIMKGNLL 357
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
LS+KRPEAAVIAFRGAQELRPDLRSYQGLVHSYL FSK+KEAL AAREAMKAMPQSAKAL
Sbjct: 358 LSLKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLAFSKIKEALLAAREAMKAMPQSAKAL 417
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGD HASN+SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 418 KLVGDAHASNSSGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 477
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNML EALSHY+AALRIN QNEAAKKGL+RLEKQMKGVDPDAP
Sbjct: 478 DWADDSLHVKLAQVFAATNMLPEALSHYQAALRINPQNEAAKKGLDRLEKQMKGVDPDAP 537
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDEENEVEDA+ DQEET+LL
Sbjct: 538 EEDEENEVEDADADQEETELL 558
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432356|ref|XP_002275310.1| PREDICTED: anaphase-promoting complex subunit 7 [Vitis vinifera] gi|297736897|emb|CBI26098.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/561 (84%), Positives = 525/561 (93%), Gaps = 1/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
M+VP++Q+T L++ GLY SAQMLGCFLVSSSA+N ETSPH+KAE+L++LGD+LFR+RE+R
Sbjct: 1 MDVPRDQVTTLMEHGLYTSAQMLGCFLVSSSAVNPETSPHIKAESLVLLGDALFREREHR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQALQ+YKI+P+QNST+ R SLSTSNRSSSPNSFN+SAINENEVK+KIASCH A
Sbjct: 61 RAIHTYKQALQHYKIIPRQNSTT-RISLSTSNRSSSPNSFNISAINENEVKFKIASCHCA 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
+ E AA+ EMEGIPSKARNLQM+LLM KL+RNSR NR A+ACYKECLRHCP+ IEAI A
Sbjct: 120 INENVAALAEMEGIPSKARNLQMNLLMGKLHRNSRQNRAAIACYKECLRHCPYVIEAIIA 179
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG T KDI+SLF QTPNRSGR PFDH DSSRWL RYVEAQCCIASNDYKGGLELF E
Sbjct: 180 LAELGVTAKDILSLFPQTPNRSGRPPFDHFDSSRWLQRYVEAQCCIASNDYKGGLELFTE 239
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNNIHILLE+AKV+AIIGKNDEAI+NFEK RSIDP+I+TYMDEYAMLL +K D+
Sbjct: 240 LLQRFPNNIHILLEIAKVEAIIGKNDEAIMNFEKARSIDPHIITYMDEYAMLLMIKSDHL 299
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLLSIDP+RPEVFVALSV+WERK+ERGALSYAEKSIRIDERHIPGYIMKGNL
Sbjct: 300 KLNKLVHDLLSIDPTRPEVFVALSVVWERKEERGALSYAEKSIRIDERHIPGYIMKGNLY 359
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
LSM RP+AAV+AFRGAQEL+PDLRSYQGLV SYL SK+KEALY AREAMKAMPQSAKAL
Sbjct: 360 LSMNRPDAAVVAFRGAQELKPDLRSYQGLVRSYLALSKIKEALYVAREAMKAMPQSAKAL 419
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHV+EGR GDA+SLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVMEGRTGDAISLLERYLK 479
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQ+ALSHY++ALRIN+QNEAAKKGLERLEKQMKGVDPDAP
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQDALSHYQSALRINAQNEAAKKGLERLEKQMKGVDPDAP 539
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDEENEVEDA+GDQEE +LL
Sbjct: 540 EEDEENEVEDADGDQEEAELL 560
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123146|ref|XP_002330350.1| predicted protein [Populus trichocarpa] gi|222871554|gb|EEF08685.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/561 (85%), Positives = 520/561 (92%), Gaps = 2/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
M+VPK+QITAL+D LY+SAQ+LG FLVSS+ ++ ETSP LKAEN I+LGD+LFR+RE+R
Sbjct: 1 MDVPKDQITALLDHELYNSAQILGSFLVSSATVSLETSPQLKAENQILLGDALFREREFR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQAL YYKI+PKQ+ST+SRSSLS + S + SFN+SAINENEVK+KIASCH
Sbjct: 61 RAIHTYKQALHYYKIIPKQSSTTSRSSLSNRSSSPN--SFNISAINENEVKFKIASCHAT 118
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L ET+AA+VEMEGIPSKAR LQMSLLMAKLYR+SRH R A+ CYKECLRHCPF IEAI A
Sbjct: 119 LNETRAALVEMEGIPSKARTLQMSLLMAKLYRSSRHTRLAITCYKECLRHCPFVIEAIVA 178
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG KD+ISLF+Q NRSGRAP DH DS+RWL RYVEAQCCIASNDYKGGLELF E
Sbjct: 179 LAELGVAAKDVISLFSQVSNRSGRAPLDHTDSTRWLQRYVEAQCCIASNDYKGGLELFGE 238
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNNIHILLE+A+ +AIIGKNDEAI+NFEKVRSIDPY++TYMDEYAMLLK K D+S
Sbjct: 239 LLQRFPNNIHILLEIARAEAIIGKNDEAIMNFEKVRSIDPYVVTYMDEYAMLLKTKGDFS 298
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLLSIDP+RPE+FVALSVLWE+KDE GALSYAEKSIRIDERHIPGYIMKG LL
Sbjct: 299 KLNKLVHDLLSIDPTRPEIFVALSVLWEKKDEIGALSYAEKSIRIDERHIPGYIMKGTLL 358
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
LS+KRPEAAVIAFRGAQELR DLRSYQGLVHSYL FSK+KEAL+AAREAMKAMPQSAKAL
Sbjct: 359 LSLKRPEAAVIAFRGAQELRADLRSYQGLVHSYLAFSKIKEALHAAREAMKAMPQSAKAL 418
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 419 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 478
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQEALSHY+AALRIN QNEAAKKGLERLEKQMKGVDPDAP
Sbjct: 479 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRINPQNEAAKKGLERLEKQMKGVDPDAP 538
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDEENEVEDA+GDQEETDLL
Sbjct: 539 EEDEENEVEDADGDQEETDLL 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107381|ref|XP_002314465.1| predicted protein [Populus trichocarpa] gi|222863505|gb|EEF00636.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/561 (84%), Positives = 520/561 (92%), Gaps = 2/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
M+VPK+QITAL+D LY+SAQ+LGCFLVSSS ++ ETSP LKAEN I+LGD+LFRDRE+R
Sbjct: 1 MDVPKDQITALLDNQLYNSAQILGCFLVSSSTVSLETSPQLKAENQILLGDALFRDREFR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQAL Y KI+PKQ+ST+SRSSLS + S + SFN+SAINENEVK+KIASCH A
Sbjct: 61 RAIHTYKQALHYCKIIPKQSSTTSRSSLSNRSSSPN--SFNISAINENEVKFKIASCHSA 118
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
+ ET+AA+VEMEGIPSKAR LQMSLLMAKLYR+SRH R A+ CYKECLRHCPF IEAI A
Sbjct: 119 MNETRAALVEMEGIPSKARTLQMSLLMAKLYRSSRHTRFAITCYKECLRHCPFVIEAIIA 178
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG KDIISLF Q NRSGRAP DH DS+RW+ RYVEAQCCIASNDYKGGL+LFAE
Sbjct: 179 LAELGVAAKDIISLFLQASNRSGRAPLDHTDSTRWVQRYVEAQCCIASNDYKGGLDLFAE 238
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFP+NIH+LLE+AKV AIIGKNDEA++NFEKVRSIDPYI+TYMDEYAMLLK K D+S
Sbjct: 239 LLQRFPHNIHVLLEIAKVQAIIGKNDEALMNFEKVRSIDPYIVTYMDEYAMLLKTKGDFS 298
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLLSIDP+RPEVFVALSVLWE+KDERGALSYAEKS RIDERHI GYIMKG LL
Sbjct: 299 KLNKLVHDLLSIDPTRPEVFVALSVLWEKKDERGALSYAEKSTRIDERHILGYIMKGTLL 358
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
LS+KRPEAAVIAFRGAQELR DLRSYQGLVHSYL FSK+KEAL+AAREAMKAMPQSAKAL
Sbjct: 359 LSLKRPEAAVIAFRGAQELRADLRSYQGLVHSYLAFSKIKEALHAAREAMKAMPQSAKAL 418
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 419 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 478
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQEA+SHY++ALRIN QNEAAKKGLERLEKQMKGVDPDAP
Sbjct: 479 DWADDSLHVKLAQVFAATNMLQEAMSHYQSALRINPQNEAAKKGLERLEKQMKGVDPDAP 538
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDEENE+EDA+GDQEETDLL
Sbjct: 539 EEDEENEIEDADGDQEETDLL 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524842|ref|XP_004169430.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/561 (83%), Positives = 521/561 (92%), Gaps = 1/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPK+QI+ L+DQGLY SAQMLGCFLVSS A N E++PHLK+E+L++LGD+LFR+REYR
Sbjct: 1 MEVPKDQISTLLDQGLYSSAQMLGCFLVSSPAANAESTPHLKSESLVLLGDALFREREYR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQALQYYKI+PKQNST++RSS SNRSSSPNSFNVSAINENEVK+KIASC+ A
Sbjct: 61 RAIHTYKQALQYYKIIPKQNSTTTRSS-LQSNRSSSPNSFNVSAINENEVKFKIASCYCA 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L + +AA+VEMEGIPSKARNLQM+LL+ KLYR +RHNR A+A YKECLRHCP+ EAI A
Sbjct: 120 LSDNRAALVEMEGIPSKARNLQMNLLLGKLYRYARHNRAAIAYYKECLRHCPYVFEAIIA 179
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG T KDIISLF QT NRSG+ PFDH DS+RWL RYVEAQCCIASNDYKGGLELF +
Sbjct: 180 LAELGTTAKDIISLFPQTANRSGKTPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLD 239
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNNIH+LLE+AKV+AIIGK DEAI+NFEK RSIDP+I+TYMDEYAMLLK+K DYS
Sbjct: 240 LLQRFPNNIHLLLEVAKVEAIIGKXDEAIMNFEKARSIDPFIVTYMDEYAMLLKIKSDYS 299
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
L+KLVHDLL+IDP+RPEVFVALSVLWE KDERGAL+YAEKSIRIDERHI G+IMKGNLL
Sbjct: 300 MLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALAYAEKSIRIDERHITGFIMKGNLL 359
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L+MK+P+AAV AFR AQELRPD+RSYQGLVHSYL SK+KEALYAAREAMKAMP SAKAL
Sbjct: 360 LAMKQPDAAVSAFRNAQELRPDIRSYQGLVHSYLALSKMKEALYAAREAMKAMPHSAKAL 419
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+N QNEAAKKGLERLEKQMKGVDPDAP
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRMNPQNEAAKKGLERLEKQMKGVDPDAP 539
Query: 541 EEDEENEVEDAEGDQEETDLL 561
E+DE+NEV+DA+GDQEE +LL
Sbjct: 540 EDDEDNEVDDADGDQEEAELL 560
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555540|ref|XP_003546089.1| PREDICTED: anaphase-promoting complex subunit 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/561 (83%), Positives = 517/561 (92%), Gaps = 1/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPK+QI L++ GLY+SAQMLGCFLVSS A+N E++ HLK E+L++LGDS FR+REYR
Sbjct: 1 MEVPKDQIATLLEHGLYNSAQMLGCFLVSSPAVNAESAAHLKTESLVLLGDSFFREREYR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQALQ YK++PKQN TSSRSSLS++ SS NS N S INENEVK+KIASCH
Sbjct: 61 RAIHTYKQALQCYKMIPKQNMTSSRSSLSSNRSSSP-NSCNGSVINENEVKFKIASCHCF 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L E KAA+VEMEGIPSKARNL M+LL+ KLYR SRH+R AVA YKECLRHCPF +EAITA
Sbjct: 120 LNENKAALVEMEGIPSKARNLPMNLLLGKLYRISRHSRAAVAIYKECLRHCPFVLEAITA 179
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG+T KDII+L QTPNRSGRA FDH DSSRWL RYVEAQCC+ASNDYKGGLELFA+
Sbjct: 180 LAELGSTAKDIITLIPQTPNRSGRASFDHTDSSRWLQRYVEAQCCMASNDYKGGLELFAD 239
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNNIH+LLEMAKV+AIIGKN+EAI+NFEK RSIDPYI+TYMDEYAMLLK+K DY
Sbjct: 240 LLQRFPNNIHLLLEMAKVEAIIGKNEEAIMNFEKARSIDPYIITYMDEYAMLLKLKSDYP 299
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLL+IDP+RPEVFVALSVLWERKDE+ AL YAE+SIRIDERHIPGYIMKGNLL
Sbjct: 300 KLNKLVHDLLNIDPARPEVFVALSVLWERKDEKKALQYAEQSIRIDERHIPGYIMKGNLL 359
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L+MKR EAAV AFR AQELRPD+RSYQGLVH+YL SK+KEALYA+REAMKAMPQSAKAL
Sbjct: 360 LTMKRAEAAVPAFRAAQELRPDIRSYQGLVHTYLALSKIKEALYASREAMKAMPQSAKAL 419
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSSGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+N QNEAAK+GLERLEKQMKGVDPDAP
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRLNPQNEAAKRGLERLEKQMKGVDPDAP 539
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDE+N+VEDA+GDQ+ET+LL
Sbjct: 540 EEDEDNDVEDADGDQDETELL 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549081|ref|XP_003542926.1| PREDICTED: anaphase-promoting complex subunit 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/561 (83%), Positives = 518/561 (92%), Gaps = 1/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPK+QI L++ GLY+SAQMLGCFLVSS A+N E++PHLK E+L++LGDS FR+REYR
Sbjct: 1 MEVPKDQIATLLEHGLYNSAQMLGCFLVSSPAVNAESAPHLKTESLVLLGDSFFREREYR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQALQ YK++PKQN TSSRSSLS++ SS NS N S INENEVK+KIASCH
Sbjct: 61 RAIHTYKQALQCYKMIPKQNMTSSRSSLSSNRSSSP-NSCNGSVINENEVKFKIASCHSF 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L E KAA+VEMEGIPSKARNL M+LL+ +LYR SRH+R AVA YKECLRHCP+ +EAITA
Sbjct: 120 LNENKAALVEMEGIPSKARNLPMNLLLGRLYRISRHSRAAVAIYKECLRHCPYVLEAITA 179
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG+T KDIISL QT NRSGRAPFDH DSSRWL RYVEAQCC+ASNDYKGGLELFA+
Sbjct: 180 LAELGSTAKDIISLIPQTLNRSGRAPFDHTDSSRWLQRYVEAQCCMASNDYKGGLELFAD 239
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNNIHI+LEMAKV+AIIGKN+EAI+NFEK RSIDPYI+TYMDEYAMLLK+K DY
Sbjct: 240 LLQRFPNNIHIILEMAKVEAIIGKNEEAIMNFEKARSIDPYIVTYMDEYAMLLKLKSDYP 299
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLL+IDP+RPEVFVALSVLWERKDE+ AL YAE+S+RIDERHIPGYIMKGNLL
Sbjct: 300 KLNKLVHDLLNIDPARPEVFVALSVLWERKDEKKALQYAEQSVRIDERHIPGYIMKGNLL 359
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L+MKR EAAV AFR AQELRPD+RSYQGLVH+YL SK+KEALYA+REAMKAMPQSAKAL
Sbjct: 360 LTMKRAEAAVPAFRAAQELRPDIRSYQGLVHTYLALSKIKEALYASREAMKAMPQSAKAL 419
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSSGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+N QNEAAK+GLERLEKQMKGVDPDAP
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRLNPQNEAAKRGLERLEKQMKGVDPDAP 539
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDE+N+VEDA+GDQ+ET+LL
Sbjct: 540 EEDEDNDVEDADGDQDETELL 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450662|ref|XP_004143081.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/561 (82%), Positives = 519/561 (92%), Gaps = 1/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPK+QI+ L+DQGLY SAQMLGCFLVSS A N E++PHLK+E+L++LGD+LFR+REYR
Sbjct: 1 MEVPKDQISTLLDQGLYSSAQMLGCFLVSSPAANAESTPHLKSESLVLLGDALFREREYR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAI ++ QALQYYKI+PKQNST++RSS SNRSSSPNSFNVSAINENEVK+KIASC+ A
Sbjct: 61 RAIVSFXQALQYYKIIPKQNSTTTRSS-LQSNRSSSPNSFNVSAINENEVKFKIASCYCA 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L + +AA+VEMEGIPSKARNLQM+LL+ KLYR +RHNR A+A YKECLRHCP+ EAI A
Sbjct: 120 LSDNRAALVEMEGIPSKARNLQMNLLLGKLYRYARHNRAAIAYYKECLRHCPYVFEAIIA 179
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG T KDIISLF QT NRSG+ PFDH DS+RWL RYVEAQCCIASNDYKGGLELF +
Sbjct: 180 LAELGTTAKDIISLFPQTANRSGKTPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLD 239
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNNIH+LLE+AKV+AIIGK DEAI+NFEK RSIDP+I+TYMDEYAMLLK+K DYS
Sbjct: 240 LLQRFPNNIHLLLEVAKVEAIIGKKDEAIMNFEKARSIDPFIVTYMDEYAMLLKIKSDYS 299
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
L+KLVHDLL+IDP+RPEVFVALSVLWE KDERGAL+YAEKSIRIDERHI G+IMKGNLL
Sbjct: 300 MLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALAYAEKSIRIDERHITGFIMKGNLL 359
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L+MK+P+AAV AFR AQELRPD+RSYQGLVHSYL SK+KEALYAAREAMKAMP SAKAL
Sbjct: 360 LAMKQPDAAVSAFRNAQELRPDIRSYQGLVHSYLALSKMKEALYAAREAMKAMPHSAKAL 419
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNMLQEALSHY+AALR+N QNEAAKKGLERLEKQMKGVDPDAP
Sbjct: 480 DWADDSLHVKLAQVFAATNMLQEALSHYQAALRMNPQNEAAKKGLERLEKQMKGVDPDAP 539
Query: 541 EEDEENEVEDAEGDQEETDLL 561
E+DE+NEV+DA+GDQEE +LL
Sbjct: 540 EDDEDNEVDDADGDQEEAELL 560
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447381|ref|XP_003593966.1| Anaphase-promoting complex subunit [Medicago truncatula] gi|355483014|gb|AES64217.1| Anaphase-promoting complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/561 (81%), Positives = 516/561 (91%), Gaps = 1/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPK+QI L++ GLY+SAQ+LGCFLVSS A N E+SPHLK E+L++LGDS +R+REYR
Sbjct: 1 MEVPKDQIATLLENGLYNSAQILGCFLVSSPAANAESSPHLKIESLVLLGDSFYREREYR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQALQYYK++PKQ+ +S+RSSLS++ SS NS N S INENEVK+KIASCH
Sbjct: 61 RAIHTYKQALQYYKMIPKQSMSSARSSLSSNRSSSP-NSCNTSVINENEVKFKIASCHCF 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L E KAA+VEMEGIPSKARNL M+LL+ KLYR SRH+R AVA YKECLRHCPF +EAITA
Sbjct: 120 LNENKAALVEMEGIPSKARNLPMNLLLGKLYRISRHSRAAVAIYKECLRHCPFILEAITA 179
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
L+E+G+T KDIISLF QTPNRS RAPFD DSSRWL RYVEAQCCI+SNDYKGGLELFA+
Sbjct: 180 LSEMGSTAKDIISLFPQTPNRSVRAPFDPTDSSRWLQRYVEAQCCISSNDYKGGLELFAD 239
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNN H++LE+AKV+AIIGKN+EAI NFEK RSIDPYI+TYMDEYAMLLK+K DYS
Sbjct: 240 LLQRFPNNTHLILEIAKVEAIIGKNEEAITNFEKARSIDPYIITYMDEYAMLLKLKSDYS 299
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
KL+KLVHDLL+IDP+RPEVFVALSVLWERKDE+ ALSYAE+SIRIDERHIPGYI+KGNLL
Sbjct: 300 KLNKLVHDLLNIDPARPEVFVALSVLWERKDEKRALSYAEQSIRIDERHIPGYIVKGNLL 359
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L+MKRPEAAV AFRGAQELRPD+R+YQGLVH+YL K+KEALYA+REAMKAMPQSAKAL
Sbjct: 360 LTMKRPEAAVSAFRGAQELRPDIRTYQGLVHTYLALFKIKEALYASREAMKAMPQSAKAL 419
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHASN+ GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK
Sbjct: 420 KLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 479
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
DWADDSLHVKLAQVFAATNML EALSHY+AALR+N QNEAAK+GLERLEKQMKGVDPDAP
Sbjct: 480 DWADDSLHVKLAQVFAATNMLSEALSHYQAALRLNPQNEAAKRGLERLEKQMKGVDPDAP 539
Query: 541 EEDEENEVEDAEGDQEETDLL 561
EEDE+N+VED +GDQ+ET+LL
Sbjct: 540 EEDEDNDVEDGDGDQDETELL 560
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30687770|ref|NP_850309.1| anaphase-promoting complex subunit 7 [Arabidopsis thaliana] gi|75331121|sp|Q8VY89.1|APC7_ARATH RecName: Full=Anaphase-promoting complex subunit 7; AltName: Full=Cyclosome subunit 7 gi|18252241|gb|AAL61953.1| unknown protein [Arabidopsis thaliana] gi|27311883|gb|AAO00907.1| unknown protein [Arabidopsis thaliana] gi|330254539|gb|AEC09633.1| anaphase-promoting complex subunit 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/561 (75%), Positives = 484/561 (86%), Gaps = 3/561 (0%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPKEQI LI+ GLYDSA+MLGCFLVSS ++ ETSP LKAENLI+LGD+LF RE+R
Sbjct: 1 MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHR 60
Query: 61 RAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120
RAIHTYKQAL +Y +PKQ+S SRSS + + SS N+ ++SAINENEV++KIAS HFA
Sbjct: 61 RAIHTYKQALHHYTRIPKQSSGISRSS-LSLSTRSSVNASSISAINENEVRFKIASSHFA 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L ETKAAI EME + K R+L+M++LMAKL+RNS +NRGA+A YKECLR CP+ +EA+
Sbjct: 120 LNETKAAIAEMESV--KTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIG 177
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG + KDIIS F QT NRS + D +D +RWL RYVEAQCC+AS+ YKG LELFAE
Sbjct: 178 LAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAE 237
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNN+H+L E AKV+AIIGKNDEAI+ FEKVRSIDPY +T MDEYAMLL++KCDYS
Sbjct: 238 LLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYS 297
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
+L+KLVHDLLS+D +R EVFVALSVLWERKD R ALSYAEKSIR+DERHIPGYIMKGNLL
Sbjct: 298 RLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLL 357
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L KRPEAA IAFR AQ LR DLRSYQGLVHSYL F K KEALY AREAM AMPQSAKAL
Sbjct: 358 LQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKAL 417
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
KLVGDVHA +SGREKAKKFYES LRLEPGYLGA LALAELH++EGRNGDAVSLLERYLK
Sbjct: 418 KLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLK 477
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAP 540
D+ADDSLHVKLAQVFAATNMLQ++LSH++AALRIN QNEAAKKGL+RLEKQMKG+DPDA
Sbjct: 478 DYADDSLHVKLAQVFAATNMLQDSLSHFQAALRINPQNEAAKKGLDRLEKQMKGIDPDAT 537
Query: 541 EEDEENEVEDAEGDQEETDLL 561
+E++EN+VED +GD EE +L+
Sbjct: 538 DENDENDVEDVDGDTEEAELM 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| TAIR|locus:2065011 | 558 | APC7 "anaphase-promoting compl | 0.944 | 0.949 | 0.726 | 3.3e-205 | |
| UNIPROTKB|Q9UJX3 | 599 | ANAPC7 "Anaphase-promoting com | 0.894 | 0.838 | 0.286 | 3e-53 | |
| DICTYBASE|DDB_G0292470 | 580 | anapc7 "anaphase promoting com | 0.921 | 0.891 | 0.275 | 1.3e-52 | |
| RGD|1311927 | 565 | Anapc7 "anaphase promoting com | 0.894 | 0.888 | 0.284 | 1.7e-52 | |
| MGI|MGI:1929711 | 565 | Anapc7 "anaphase promoting com | 0.894 | 0.888 | 0.284 | 2.1e-52 | |
| FB|FBgn0029879 | 615 | APC7 "Anaphase Promoting Compl | 0.736 | 0.671 | 0.257 | 2.5e-24 | |
| FB|FBgn0032863 | 678 | Cdc23 "Cell division cycle 23 | 0.513 | 0.424 | 0.244 | 1.8e-13 | |
| ZFIN|ZDB-GENE-040426-866 | 579 | cdc23 "CDC23 (cell division cy | 0.508 | 0.492 | 0.240 | 2.2e-13 | |
| POMBASE|SPAC6F12.14 | 565 | cut23 "anaphase-promoting comp | 0.513 | 0.509 | 0.245 | 3.5e-13 | |
| UNIPROTKB|F1RH91 | 594 | CDC23 "Uncharacterized protein | 0.365 | 0.345 | 0.284 | 8.2e-13 |
| TAIR|locus:2065011 APC7 "anaphase-promoting complex 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1985 (703.8 bits), Expect = 3.3e-205, P = 3.3e-205
Identities = 387/533 (72%), Positives = 436/533 (81%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
MEVPKEQI LI+ GLYDSA+MLGCFLVSS ++ ETSP LKAENLI+LGD+LF RE+R
Sbjct: 1 MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHR 60
Query: 61 RAIHTYKQALQYYKIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFA 120
RAIHTYKQAL +Y +PKQ AINENEV++KIAS HFA
Sbjct: 61 RAIHTYKQALHHYTRIPKQSSGISRSSLSLSTRSSVNASSIS-AINENEVRFKIASSHFA 119
Query: 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180
L ETKAAI EME + K R+L+M++LMAKL+RNS +NRGA+A YKECLR CP+ +EA+
Sbjct: 120 LNETKAAIAEMESV--KTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIG 177
Query: 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240
LAELG + KDIIS F QT NRS + D +D +RWL RYVEAQCC+AS+ YKG LELFAE
Sbjct: 178 LAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAE 237
Query: 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300
LLQRFPNN+H+L E AKV+AIIGKNDEAI+ FEKVRSIDPY +T MDEYAMLL++KCDYS
Sbjct: 238 LLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYS 297
Query: 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360
+L+KLVHDLLS+D +R EVFVALSVLWERKD R ALSYAEKSIR+DERHIPGYIMKGNLL
Sbjct: 298 RLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLL 357
Query: 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420
L KRPEAA IAFR AQ LR DLRSYQGLVHSYL F K KEALY AREAM AMPQSAKAL
Sbjct: 358 LQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKAL 417
Query: 421 KLVGDVHASNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLK 480
KLVGDVHA +SGREKAKKFYES LRLEPGY H++EGRNGDAVSLLERYLK
Sbjct: 418 KLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLK 477
Query: 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
D+ADDSLHVKLAQVFAATNMLQ++LSH++AALRIN QNEAAKKGL+RLEKQMK
Sbjct: 478 DYADDSLHVKLAQVFAATNMLQDSLSHFQAALRINPQNEAAKKGLDRLEKQMK 530
|
|
| UNIPROTKB|Q9UJX3 ANAPC7 "Anaphase-promoting complex subunit 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 150/523 (28%), Positives = 250/523 (47%)
Query: 15 GLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73
GL+ + ++L L++ S N E SP K + L+ DSLF D+EYR A+ Y ALQ
Sbjct: 48 GLHSNVRLLSSLLLTMSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 107
Query: 74 KIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFALGETKAAIVEMEG 133
K + K +E EVKYK+A C+ L + K AI ++G
Sbjct: 108 KALSKTSKVRPSTGNSASTPQSQCLP------SEIEVKYKMAECYTMLKQDKDAIAILDG 161
Query: 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193
IPS+ R ++++++A LY+ + R +V YKE LR CP ++AI L L ++ S
Sbjct: 162 IPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVAS 221
Query: 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHI 251
+ T N P +LD WL +++A + + D + L ++ +N+ +
Sbjct: 222 M---TMNVIQTVP--NLD---WLSVWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDL 273
Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
L +A + G N ++L FE+ + +DPY++ MD Y LL + + L L +
Sbjct: 274 LGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFN 333
Query: 312 IDPSRPEVFVALSV--LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369
I E +V + ++ R AL K+I+++ + ++KG L +M R + A
Sbjct: 334 ISDQHAEPWVVSGCHSFYSKRYSR-ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 392
Query: 370 VIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
+I FR A L P L Y+GL+ YL + ++EA+ A K + +A+ L L+ V
Sbjct: 393 IIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCL 452
Query: 429 SNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLH 488
+ +EKAK + AL P Y E + D ++LL L + +D LH
Sbjct: 453 EDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 512
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531
L A N QEA+ Y AL ++ ++ + +G++++EK+
Sbjct: 513 RILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKE 555
|
|
| DICTYBASE|DDB_G0292470 anapc7 "anaphase promoting complex subunit 7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 150/545 (27%), Positives = 273/545 (50%)
Query: 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYR 60
+E+ + L++ + SA+ LG F++S N + +PH + + GDSLF E+
Sbjct: 10 VELMISNLRILVESKQFSSAEFLGNFVISVP--NQQKTPHQNIISFSLFGDSLFGKNEFV 67
Query: 61 RAIHTYKQALQY-YKIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHF 119
R++ +KQ+L +K+ E E+KYKI+ C+
Sbjct: 68 RSLKYFKQSLDILFKVYNNPNNNNNNNNKQADFDNKQF---------EYELKYKISLCYI 118
Query: 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN--SRHNRGAVACYKECLRHCPFFIEA 177
+ AI +E IP +R L L +A+LY++ ++ + YKE ++ CP +EA
Sbjct: 119 KINRNNLAISYLESIPFSSRGLDTHLTIARLYKDIGKEKSKECIISYKEVIKLCPLCLEA 178
Query: 178 ITALAELGATPKDI----ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKG 233
I +L E+G + I+ F Q N S + + +D S W+ +Q + N +
Sbjct: 179 INSLKEMGENVDQVLIPSINKFQQK-NNSFNSN-NIIDLS-WISLLSMSQYEMKRNQPEK 235
Query: 234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN----FEKVRSIDPYIMTYMDEY 289
L L ++ +F N+++L ++A + + ++ +I+N F+K+R +DPY + MD +
Sbjct: 236 SLILLKKVESKFSTNLYVLEKLAL--SYLYHDEPSIINTFNIFQKIRLLDPYYIGSMDIF 293
Query: 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDER 348
LLK + +L+K+ +DL++ +P E + ++++ + K+ +L +++I I E
Sbjct: 294 CSLLKRRSLQFELNKVCNDLVASNPYCAETWTSVALFYFLKENVEKSLENVDRAISIKES 353
Query: 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAARE 408
H + +KG +LLS+ P A+ + A +L ++ + + LV +L +++KEAL A
Sbjct: 354 HEFAHSLKGEILLSLDEPREALPSLERAFQLSKNILTARELVRCHLILNQMKEALVVAET 413
Query: 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRN 468
P +K + L+G V A+ RE+A+K AL L P +V+EGR
Sbjct: 414 INNLSPDYSKTMALLGMVLANQPEEREEARKILTKALTLSPHCTDTVLTLSKLNVVEGRF 473
Query: 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528
+A+ +L L+ D +H ++A V+ + ++A+ HY +AL IN Q E A +G+ RL
Sbjct: 474 QEAIDILNSQLEYQETDLMHTEIAGVYLTKDYHEDAMIHYNSALEINPQYEPASRGIARL 533
Query: 529 EKQMK 533
E MK
Sbjct: 534 ELIMK 538
|
|
| RGD|1311927 Anapc7 "anaphase promoting complex subunit 7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 149/523 (28%), Positives = 249/523 (47%)
Query: 15 GLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73
GL+ + ++L L++ S N E SP K + L+ DSLF D+EYR A+ Y ALQ
Sbjct: 14 GLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 73
Query: 74 KIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFALGETKAAIVEMEG 133
K + K +E EVKYK+A C+ L K AI ++G
Sbjct: 74 KALSKTSKVRPSTGNSASTPQSQCLP------SEIEVKYKMAECYTMLKLDKDAIAILDG 127
Query: 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193
IPS+ R ++++++A LY+ + R +V YKE LR CP ++AI L L ++ S
Sbjct: 128 IPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVAS 187
Query: 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHI 251
+ T N P +LD WL +++A + + D + L ++ +N+ +
Sbjct: 188 M---TMNVIQTVP--NLD---WLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDL 239
Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
L +A + G N ++L FE+ + +DPY++ MD Y LL + + L L +
Sbjct: 240 LGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFN 299
Query: 312 IDPSRPEVFVALSV--LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369
I E +V + ++ R AL K+I+++ + ++KG L +M R + A
Sbjct: 300 ISDQHAEPWVVSGCHSFYSKRYSR-ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 358
Query: 370 VIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
+I FR A L P L Y+GL+ YL + ++EA+ A K + +A+ L L+ V
Sbjct: 359 IIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCL 418
Query: 429 SNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLH 488
+ +EKAK + AL P Y E + D ++LL L + +D LH
Sbjct: 419 EDPVTQEKAKTLLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 478
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531
L + N QEA+ Y AL ++ ++ + +G++++EK+
Sbjct: 479 RILGDFLVSVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKE 521
|
|
| MGI|MGI:1929711 Anapc7 "anaphase promoting complex subunit 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 149/523 (28%), Positives = 249/523 (47%)
Query: 15 GLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYY 73
GL+ + ++L L++ S N E SP K + L+ DSLF D+EYR A+ Y ALQ
Sbjct: 14 GLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYAMALQQK 73
Query: 74 KIVPKQXXXXXXXXXXXXXXXXXXXXXXXXAINENEVKYKIASCHFALGETKAAIVEMEG 133
K + K +E EVKYK+A C+ L K AI ++G
Sbjct: 74 KALSKTSKVRPSTGNSASTPQSQCLP------SEIEVKYKMAECYTMLKLDKDAIAVLDG 127
Query: 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193
IPS+ R ++++++A LY+ + R +V YKE LR CP ++AI L L ++ S
Sbjct: 128 IPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVAS 187
Query: 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHI 251
+ T N P +LD WL +++A + + D + L ++ +N+ +
Sbjct: 188 M---TMNVIQTVP--NLD---WLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDL 239
Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
L +A + G + ++L FE+ + +DPY++ MD Y LL + + L L +
Sbjct: 240 LGSLADLYFRAGDSKNSVLKFEQAQMLDPYLIRGMDVYGYLLAREGRLEDVENLGCRLFN 299
Query: 312 IDPSRPEVFVALSV--LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369
I E +V + ++ R AL K+I+++ + ++KG L +M R + A
Sbjct: 300 ISDQHAEPWVVSGCHSFYSKRYSR-ALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 358
Query: 370 VIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428
+I FR A L P L Y+GL+ YL + ++EA+ A K + +A+ L L+ V
Sbjct: 359 IIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCL 418
Query: 429 SNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLH 488
+ +EKAK + AL P Y E + D ++LL L + +D LH
Sbjct: 419 EDPVTQEKAKTLLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLH 478
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531
L A N QEA+ Y AL ++ ++ + +G++++EK+
Sbjct: 479 RILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKE 521
|
|
| FB|FBgn0029879 APC7 "Anaphase Promoting Complex subunit 7" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 113/438 (25%), Positives = 197/438 (44%)
Query: 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKL-YRNSRHNRG----AVAC 163
E + + A C+ +G T AI + +P R+ +++L++A+L + SRH AV
Sbjct: 110 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHGTTKKSEAVLA 169
Query: 164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223
YKE +R CP ++ I AL ELG +I SL + P DH D WL ++++A
Sbjct: 170 YKEVIRECPMALQVIEALLELGVNGNEINSLVMH----AATVP-DHFD---WLSKWIKAL 221
Query: 224 CCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
+ + + + F L N H+++ + K G +A F +P
Sbjct: 222 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 281
Query: 282 IMTYMDEYAMLLKVK--C--DYSKLSKLVHDLLS-IDPSRPEVFVALSVLW-ERKDERGA 335
+ + A+L + C D + + L + S + + F +L+ E K ERG
Sbjct: 282 NVEAIGLMAVLCGQEGGCEQDSADMDYLFAKVSSEVKYTASHWFAHAQLLYDEGKFERG- 340
Query: 336 LSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYL 394
L++ EK + + R+ I++G LL++++R AV AFR AQ + P Y+GL HSYL
Sbjct: 341 LNFVEKCLDSEPRNHEALILRGRLLIALERHTQAVCAFRTAQMVAPYRFEIYRGLFHSYL 400
Query: 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA--SNASGREKAKKFYESALRLEPGYX 452
+ KEA ++ S ++ + G + R A+KF E +L++ Y
Sbjct: 401 AQKRFKEANALCNWTIRLFQNSPRSFTMFGRTLFLFPDPRMRRTARKFAEKSLKINHIYT 460
Query: 453 XXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
+EG + LLE+++ + +L L + +A+ +Y AL
Sbjct: 461 PAVNLIADICQVEGPTKAIIKLLEKHVIIFPKVNLLNHLGDIMRKQKEPVKAMEYYYKAL 520
Query: 513 RINSQNEAAKKGLERLEK 530
R + +++ +GL L K
Sbjct: 521 RQDPKSKRTLRGLRLLAK 538
|
|
| FB|FBgn0032863 Cdc23 "Cell division cycle 23 ortholog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 73/298 (24%), Positives = 138/298 (46%)
Query: 217 HRYVEAQCCIASNDYKGGLELFAEL-LQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275
H Y+E + ND GL+++ +L F +I+++ +MA V D+AI ++ +
Sbjct: 223 HTYLE----LYLND--DGLKIYEDLQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQAL 276
Query: 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERG 334
DPY + +D Y+ LL VK +++++L H +SI+ RPE + + R D +
Sbjct: 277 LESDPYRLDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQV 336
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSY 393
A+SY +++++++ +++ + + G+ + +K AA+ ++R A E+ + D R++ GL +Y
Sbjct: 337 AISYFQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAY 396
Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYXX 453
+LY + A + P ++ L +G+ + E A K Y A+ +
Sbjct: 397 EIIKMHYYSLYYFKIAHQLRPYDSRMLVALGETY-EKLDKCENAVKCYWKAIDVGDIEGI 455
Query: 454 XXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511
H G + AV Y +D + L Q F E YE A
Sbjct: 456 AMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQGFITLANYYEKKGEYERA 513
|
|
| ZFIN|ZDB-GENE-040426-866 cdc23 "CDC23 (cell division cycle 23, yeast, homolog)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 70/291 (24%), Positives = 133/291 (45%)
Query: 215 WLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAIIGKNDEAILNFE 273
W+ + A K L+ + L++ F + +I+ ++A I D+A+ F
Sbjct: 211 WVRDFFMAHMYTELQMIKEALQKYQSLMEAGFAKSSYIISQIAVAYHNIRDIDQALYLFN 270
Query: 274 KVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD-- 331
++R DP+ + MD ++ LL V+ +LS L H+L+ ID R E + + +
Sbjct: 271 ELREQDPFRIENMDTFSNLLYVRSMKPELSYLAHNLVEIDKYRVETCCVIGNYYSLRSQH 330
Query: 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLV 390
E+ AL Y +++++++ R + + + G+ + MK AA+ A+R A E+ + D R++ GL
Sbjct: 331 EKAAL-YFQRALKLNPRCLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLG 389
Query: 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
+Y +LY R+A + P ++ L +G+ + S + +AKK Y A +
Sbjct: 390 QTYEILKMPFYSLYYYRKAHQLRPNDSRMLVALGECY-EKLSQQLEAKKCYWRAYSVGDV 448
Query: 451 YXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNML 501
H + DA Y++D ++ A+V A L
Sbjct: 449 ERMALLKLAKLHEQLNESDDAAQCYIIYIQDIFSCGEQLEHAEVSTALRYL 499
|
|
| POMBASE|SPAC6F12.14 cut23 "anaphase-promoting complex subunit Apc8" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 74/302 (24%), Positives = 142/302 (47%)
Query: 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205
L +YR + + A+ K C+ PFF A L+ + + + ++ +Q P+
Sbjct: 178 LSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMT 237
Query: 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265
++ +S LH+ + S+ Y+ E AE++ FPN+ ++ + A +
Sbjct: 238 KIFYVYASHELHQ-------VNSSAYEKLAE--AEII--FPNSRYLKTQRALLTYDSRDF 286
Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
DEA FE + + DPY + MD Y+ +L V + SKL L SID RPE +
Sbjct: 287 DEAESLFENILTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKFRPETCSIIGN 346
Query: 326 LWERKDERG-ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDL 383
+ E A++Y +++++++ ++ + + G+ + +K AA+ ++R A ++ R D
Sbjct: 347 YYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDY 406
Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443
R++ GL +Y ALY + A P + + +G+ + ++A K Y+
Sbjct: 407 RAWYGLGQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCY-EKIDRPQEAIKSYKR 465
Query: 444 AL 445
AL
Sbjct: 466 AL 467
|
|
| UNIPROTKB|F1RH91 CDC23 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 62/218 (28%), Positives = 111/218 (50%)
Query: 235 LELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
L+L E LQ++ N I +I+ ++A I D+A+ F ++R DPY + M
Sbjct: 238 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 297
Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD--ERGALSYAEKSIR 344
D ++ LL V+ S+LS L H+L ID R E + + + E+ AL Y +++++
Sbjct: 298 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAAL-YFQRALK 356
Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEAL 403
++ R++ + + G+ + MK AA+ A+R A E+ + D R++ GL +Y L
Sbjct: 357 LNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCL 416
Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441
Y R A + P ++ L +G+ + + +AKK Y
Sbjct: 417 YYYRRAHQLRPNDSRMLVALGECY-EKLNQLVEAKKCY 453
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9WVM3 | APC7_MOUSE | No assigned EC number | 0.3087 | 0.8966 | 0.8902 | yes | no |
| Q8VY89 | APC7_ARATH | No assigned EC number | 0.7504 | 0.9946 | 1.0 | yes | no |
| Q9UJX3 | APC7_HUMAN | No assigned EC number | 0.3106 | 0.8966 | 0.8397 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 561 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-19 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-16 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-08 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-04 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 3e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 4e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| TIGR00205 | 108 | TIGR00205, fliE, flagellar hook-basal body complex | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 9e-19
Identities = 107/498 (21%), Positives = 182/498 (36%), Gaps = 60/498 (12%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
AE L + G + + A +Y+QAL S ++ L+
Sbjct: 125 AELLALRGLAYLGLGQLELAQKSYEQALAI-----DPRSLYAKLGLA------------Q 167
Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGI---PSKARNLQMSLLMAKLYRNSRHNRG 159
A+ EN E +A I E+ A L+ LL++ +
Sbjct: 168 LALAENRFD-----------EARALIDEVLTADPGNVDALLLKGDLLLS-----LGNIEL 211
Query: 160 AVACYKECLRHCPFFIEAITALA-------ELGATPKDIISLFAQTPNRSGRAPFDHLDS 212
A+A Y++ + P I + ALA E K +L + PN
Sbjct: 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH------- 264
Query: 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272
Y++A +Y+ E + L+ P + LL + +G ++A
Sbjct: 265 ------YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318
Query: 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF-VALSVLWERKD 331
++ P A + + + L +DP P + D
Sbjct: 319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378
Query: 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390
A Y K+ +D + G LS P A+ A +L P+L R+ L+
Sbjct: 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
Query: 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
SYL+ + +AL AA++ K P +A L+G ++ KA++ +E AL +EP
Sbjct: 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY-LGKGDLAKAREAFEKALSIEPD 497
Query: 451 YLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLHVKLAQVFAATNMLQEALSHYE 509
+ AA LA + + EG DA+ E+ L D + + LA ++ T +EA++ E
Sbjct: 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557
Query: 510 AALRINSQNEAAKKGLER 527
A +N Q L +
Sbjct: 558 KAAELNPQEIEPALALAQ 575
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 63/301 (20%), Positives = 122/301 (40%), Gaps = 4/301 (1%)
Query: 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285
+ S + L +L ++ P+N + + + G +A FEK SI+P
Sbjct: 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
Query: 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK-DERGALSYAEKSIR 344
A + + + + +L+IDP +AL+ L+ R +E A+++ EK+
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561
Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEAL 403
++ + I + L + + A+ A + PD ++ L + L + +A+
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463
+ ++ + P SA AL L+ D +A KA + AL L+P A + LA+L +
Sbjct: 622 SSFKKLLALQPDSALALLLLADAYAV-MKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680
Query: 464 IEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522
R A + + K +L ++ A+ Y AL+ ++ A
Sbjct: 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740
Query: 523 K 523
K
Sbjct: 741 K 741
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 70/353 (19%), Positives = 133/353 (37%), Gaps = 40/353 (11%)
Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP- 280
AQ +A N + L E+L P N+ LL + +G + A+ + K ++ P
Sbjct: 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225
Query: 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV-FVALSVLWERKDERGALSYA 339
I + +L++ ++ + K LL P+ P ++ V +++K+ A
Sbjct: 226 NIAVLLALATILIEAG-EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284
Query: 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR-SYQGLVHSYLQFSK 398
+ +++ ++P ++ G + E A + P+ + + L L+ +
Sbjct: 285 QDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
Query: 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALAL 458
V EA+ A+ P AL L+G+ + + EKA ++ A L+P A L
Sbjct: 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGD-FEKAAEYLAKATELDPENAAARTQL 403
Query: 459 AELHVIEG-------------------------------RNGD---AVSLLERYLKDWAD 484
+ +G R+G A++ ++ K D
Sbjct: 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463
Query: 485 D-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVD 536
+ SLH L ++ L +A +E AL I A L R++ Q D
Sbjct: 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 23/252 (9%)
Query: 308 DLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366
LL++ P + L+ K+ A++ ++++ + + I LLL+ KR
Sbjct: 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685
Query: 367 EAAVIAFRGAQELRPDLRSYQGLV-HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
E+A + Q+ P L YL+ A+ A R+A+K P S A+KL
Sbjct: 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL--- 742
Query: 426 VHASNASGRE-KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484
A ASG +A K E+ L+ P ALAEL++ + A+ + +K D
Sbjct: 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 485 DSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEA--------------AKKGLERLE 529
+++ LA + AL + E AL++ A A + L L
Sbjct: 803 NAVVLNNLAWL-YLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861
Query: 530 KQMKGVDPDAPE 541
K + P+A
Sbjct: 862 KAVNIA-PEAAA 872
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 12/232 (5%)
Query: 299 YSKLSKLVHDLLSI----DPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYI 354
+ K++ L+ L++ D S E+ A ++ + A+ + +++ D
Sbjct: 1 FIKITALLCIALALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARF 60
Query: 355 MKGNLLLSMKRPEAAVIAFRGAQELR-PDLRSYQGLVHSYLQFSKVKEAL-YAAREAMKA 412
+ G + L++ AA R A L P + L +YL K ++ L + +
Sbjct: 61 LLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLD 120
Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA 471
+A+ L L G + G+ E A+K YE AL ++P L A L LA+L + E R +A
Sbjct: 121 DEGAAELLALRGLAYL--GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA 178
Query: 472 VSLLERYLKDWAD--DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
+L++ L D+L +K + + ++ AL+ Y A+ + N A
Sbjct: 179 RALIDEVLTADPGNVDALLLK-GDLLLSLGNIELALAAYRKAIALRPNNIAV 229
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 70/344 (20%), Positives = 120/344 (34%), Gaps = 45/344 (13%)
Query: 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278
A+ + N YK + LQ+ PN+ + K+ +G A K S+
Sbjct: 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL 85
Query: 279 DP----------YIMTYMDEYAMLLKVKCDYSKLS------------------------- 303
++ +L + L
Sbjct: 86 GYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQ 145
Query: 304 KLVHDLLSIDPSRPEVFVALSVL-WERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362
K L+IDP + L+ L A + ++ + D ++ ++KG+LLLS
Sbjct: 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205
Query: 363 MKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK 421
+ E A+ A+R A LRP ++ L ++ + +EA A +K P S A
Sbjct: 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY 265
Query: 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481
L V + E A++ + AL+ P YL A L G A L + LK
Sbjct: 266 LKALVDFQKKN-YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY 324
Query: 482 WADDSLHVKLAQVFAATNMLQ----EALSHYEAALRINSQNEAA 521
+ +L A+ + EA++ AL ++ + AA
Sbjct: 325 APNSHQARRLL---ASIQLRLGRVDEAIATLSPALGLDPDDPAA 365
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 4/179 (2%)
Query: 366 PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
+AA + + ++ + G + EAL + + A P + L+L GD
Sbjct: 291 QQAADLLAKRSKRGGLAAQ--YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGD 348
Query: 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485
+ A+ ++A + + AL L+P L LA+ + G+ +A+ +L RYL + +D
Sbjct: 349 ILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407
Query: 486 SL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAPEED 543
LAQ +A EAL + + E A L R +Q+K PD D
Sbjct: 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARAD 466
|
Length = 484 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 20/265 (7%)
Query: 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI---ISLFAQTPNR 201
LL+A Y ++ A+ K L P EA LA+L K + +
Sbjct: 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698
Query: 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI 261
+A +E + DY ++ + + L+R P++ +++ +
Sbjct: 699 HPKAALGFE---------LEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLA 748
Query: 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321
G EA+ E P A L + DY K K ++ P V
Sbjct: 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
Query: 322 ALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMK--GNLLLSMKRPEAAVIAFRGAQE 378
L+ + E KD R AL YAE+++++ +IP I+ G LL+ + A+ R A
Sbjct: 809 NLAWLYLELKDPR-ALEYAERALKL-APNIPA-ILDTLGWLLVEKGEADRALPLLRKAVN 865
Query: 379 LRPDLRSYQ-GLVHSYLQFSKVKEA 402
+ P+ + + L + L + EA
Sbjct: 866 IAPEAAAIRYHLALALLATGRKAEA 890
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMK 411
+ GNL + + A+ + A EL PD +Y L +Y + K +EAL +A++
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 412 AMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP 449
P +AKA +G + G+ E+A + YE AL L+P
Sbjct: 63 LDPDNAKAYYNLGLAY--YKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 328 ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD----L 383
++ D A EK++ D + ++++ + + + A ++R A L P+ L
Sbjct: 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106
Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFY 441
+Y + + + EA+ A+ A + + L+ +G + A A ++A+++
Sbjct: 107 NNYGAFLCAQGRPE---EAMQQFERALADPAYGEPSDTLENLG-LCALKAGQFDQAEEYL 162
Query: 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479
+ AL L+P + A L LA LH G A LERY
Sbjct: 163 KRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLG-A 454
+ A ++A+ A PQ +A L+GD+ A G A + E +P YL
Sbjct: 194 GDLDAARALLKKALAADPQCVRASILLGDLAL--AQGDYAAAIEALERVEEQDPEYLSEV 251
Query: 455 ALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513
L E + G + + L R L+++ L + LAQ+ + A + LR
Sbjct: 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR 310
|
Length = 389 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 22/200 (11%)
Query: 328 ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQ 387
E+ D A +K++ D Y+ + E A +FR A L P+
Sbjct: 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----N 98
Query: 388 GLVHS-YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS-----------NASGRE 435
G V + Y F L + +AM Q +A++ + A +
Sbjct: 99 GDVLNNYGTF------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152
Query: 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495
KA+K+ AL+++P + L LAEL+ + G+ DA + LERY + + + + L
Sbjct: 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212
Query: 496 AATNMLQEALSHYEAALRIN 515
A A Y A L+
Sbjct: 213 ARALGDVAAAQRYGAQLQKL 232
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 400 KEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP----GYLGAA 455
KEA+ + A+ L+ + N +KA + Y L+ +P G LG A
Sbjct: 70 KEAIDVCERY-SPVGLPARVLEALA-KAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLA 127
Query: 456 LALAELHVIEGRNGDAVSLLERYLKDWADDSLHVK-LAQVFAATNMLQEALSHYEAALRI 514
L LA+ G++ +A+ L+ Y+ + D+ + LA V A +AL ++ AL +
Sbjct: 128 LTLADA----GKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTL 183
Query: 515 NSQNEAAKKGLERL 528
N A L R+
Sbjct: 184 EPDNPEAALELYRI 197
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKL 491
++A ++YE AL L+P A LA + G+ +A+ E+ L+ D A + L
Sbjct: 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK--AYYNL 74
Query: 492 AQVFAATNMLQEALSHYEAALRINSQ 517
+ +EAL YE AL ++
Sbjct: 75 GLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESA 444
L + Y + EAL +A++ P +A A + + G+ E+A + YE A
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKA 60
Query: 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
L L+P A L + G+ +A+ E+ L+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|232873 TIGR00205, fliE, flagellar hook-basal body complex protein FliE | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.004
Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 62 AIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF------NVSAINENEVKYKIA 115
+ A+ + + QN ++ + S+ +++ +SF +++ +N+ ++
Sbjct: 1 MVRNDAFAISPFINLNTQNPHTAVNLFSSKSKAQDNDSFSDLLKNSITDLNKTQLASDKV 60
Query: 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169
+ ALG + + ++ KA MS+ + K RN AV Y+E +R
Sbjct: 61 TEQAALGPSSVDLHDVMIAMQKA---SMSMSILKEVRNK-----AVKAYQEIMR 106
|
fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction [Cellular processes, Chemotaxis and motility]. Length = 108 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 100.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 100.0 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.98 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.97 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.96 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.96 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.96 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.95 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.95 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.95 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.92 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.92 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.92 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.91 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.91 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.9 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.9 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.88 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.87 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.87 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.85 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.85 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.84 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.84 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.79 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.75 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.72 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.66 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.64 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.57 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.55 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.52 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.42 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.4 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.38 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.36 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.28 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.24 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.19 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.13 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.11 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.11 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.09 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.09 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.05 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.03 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.02 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.0 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.0 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.95 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.91 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.85 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.8 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.78 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.77 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.76 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.72 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.66 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.59 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.53 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.39 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.36 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.28 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.24 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.2 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.19 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 98.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.17 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.1 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.05 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 98.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.02 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.01 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.96 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.96 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.91 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.89 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.88 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.87 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.87 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.86 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.84 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.83 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.79 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.61 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.6 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.57 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.54 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.54 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.52 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.51 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.49 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.48 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.41 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.39 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.38 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.36 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.3 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.3 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 97.27 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.18 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.18 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.13 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.11 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 97.06 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.02 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.95 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.92 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.77 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.76 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.7 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.63 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.53 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.52 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.45 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.43 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.34 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.3 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.26 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.19 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.14 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.13 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.12 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.12 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.07 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.92 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.88 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.77 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.73 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.65 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.64 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.63 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.51 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.46 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.38 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.36 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.13 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.12 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.02 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.95 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.79 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.62 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.59 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.57 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.53 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.46 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 94.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.35 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.3 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 94.19 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.1 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 93.84 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.8 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 93.77 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.73 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.57 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.55 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.43 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.37 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.34 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 93.17 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 93.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.01 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 92.75 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.66 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.48 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.11 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.04 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 91.92 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.91 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.91 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.74 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.73 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.66 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 91.63 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 91.4 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 91.38 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.08 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 90.86 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 90.76 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 90.73 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.29 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 90.29 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 89.72 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 89.71 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 89.11 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.83 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 88.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.7 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 88.35 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 88.3 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 88.16 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 87.87 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.83 | |
| PF12854 | 34 | PPR_1: PPR repeat | 86.93 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.79 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 86.78 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 86.73 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.54 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 86.3 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 86.16 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.07 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.35 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 85.29 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 85.21 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 84.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.64 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 83.9 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 83.72 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 83.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.88 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 82.5 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 82.47 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 82.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.21 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 81.83 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 81.79 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.53 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 80.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 80.33 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=373.54 Aligned_cols=452 Identities=17% Similarity=0.153 Sum_probs=415.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccc-cccCCCh--HHHHHHHHHHHHhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-NVSAINE--NEVKYKIASCHFAL 121 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~--~~~~~~~a~~~~~~ 121 (561)
....++.-.|+.|+|.+|.+.....-..+|.+......+..+.....+.+...... .....++ .+.+..+|..+...
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999887766655544444433333332222 2222233 78888899999999
Q ss_pred CCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccc
Q 008550 122 GETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPN 200 (561)
Q Consensus 122 ~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (561)
|++++|+..++. +...|+..++|..+|.++...|+.+.|..+|..+++.+|+...+...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l------------------- 190 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL------------------- 190 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch-------------------
Confidence 999999999888 677799999999999999999999999999999999999877776655
Q ss_pred ccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 008550 201 RSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (561)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (561)
|..+...|+..+|..+|.+++...|.-..+|..+|.++..+|+...|+..|+++++++|
T Consensus 191 ---------------------gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP 249 (966)
T KOG4626|consen 191 ---------------------GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP 249 (966)
T ss_pred ---------------------hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC
Confidence 77778889999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHH
Q 008550 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (561)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 359 (561)
...++++++|.+|...+.++.|+.+|.+++...|++..++-++|.+|.. |..+-|+..|++++.+.|+.++++.++|.+
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
+...|+..+|..+|.+++.+.|.. .+.+++|.+|..+|++++|..+|.++++.+|..+.++.++|.+|.++ |++++|+
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq-gnl~~Ai 408 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ-GNLDDAI 408 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc-ccHHHHH
Confidence 999999999999999999999998 77999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 439 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.+|+.++.+.|...+++.++|..|..+|+.+.|+..|.+++..+|.- +++.++|.+|...|+..+|+..|+.+++++|+
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCCCCCC
Q 008550 518 NEAAKKGLERLEKQMKGVDPDA 539 (561)
Q Consensus 518 ~~~~~~~l~~l~~~~~~~~~~~ 539 (561)
.+++..++......+- +|.+
T Consensus 489 fpdA~cNllh~lq~vc--dw~D 508 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVC--DWTD 508 (966)
T ss_pred CchhhhHHHHHHHHHh--cccc
Confidence 9999999999887754 6655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=347.61 Aligned_cols=427 Identities=17% Similarity=0.182 Sum_probs=394.1
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCC--------------------------chhhhHHHHHHHHHHhhhch
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGET--------------------------SPHLKAENLIILGDSLFRDR 57 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~ 57 (561)
..+.++.+++.|+|.+|...+..+-...+.+.+. ..+.-++++-.+|+++-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4577889999999999999887765443322211 01444678888999999999
Q ss_pred hHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCC
Q 008550 58 EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPS 136 (561)
Q Consensus 58 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~ 136 (561)
++++|+..|+.+++++|++. +++..+|.++...|+.+.|...+.. +..
T Consensus 131 ~~~~al~~y~~aiel~p~fi-------------------------------da~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFI-------------------------------DAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hHHHHHHHHHHHHhcCchhh-------------------------------HHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 99999999999999987554 6899999999999999999998776 677
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
.|....+...+|.++...|+..+|..+|.+++...|...-+|..|
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnL----------------------------------- 224 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNL----------------------------------- 224 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhc-----------------------------------
Confidence 798889999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
|.++..+|+...|+..|+++++.+|+.+++++.+|.+|...+.++.|+.+|.+++...|.+..++-++|.+|+.+
T Consensus 225 -----g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 225 -----GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred -----chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
|..+-|+..|+++++..|+.++++.+++..+.. |+..+|..+|.+++.+.|.++++..++|.++..+|.+++|...|.+
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 376 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
+++..|.. .+..++|.+|..+|++++|+.+|++++.+.|..++++.++|..|..+ |+.+.|+.+|.+++..+|...++
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~-g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM-GDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-hhHHHHHHHHHHHHhcCcHHHHH
Confidence 99999998 56999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~ 502 (561)
+.+||.+|...|+..+|+..|+.++++.|+. +++.+++.++.-..++.
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 9999999999999999999999999999987 78888887776554443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=377.83 Aligned_cols=512 Identities=17% Similarity=0.157 Sum_probs=397.9
Q ss_pred HHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchh
Q 008550 6 EQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (561)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (561)
..+..+...|+++.|+.....++...+. ....+..+|.+++..|++++|+..|+++++.+|.++......+.
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPD--------DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3455666777777777777766654221 23366677777777777777777777777777776666655565
Q ss_pred hhcccCCCCCCccccc-c------------------------------------cCCChHHHHHHHHHHHHhcCCHHHHH
Q 008550 86 SSLSTSNRSSSPNSFN-V------------------------------------SAINENEVKYKIASCHFALGETKAAI 128 (561)
Q Consensus 86 ~~~~~~~~~~a~~~~~-~------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~ 128 (561)
.....|+...+...+. . ..++...++..+|.++...|++++|+
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 5555565554433331 0 01122344555555555555555555
Q ss_pred HHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 129 VEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 129 ~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
..++++ ...|.+..+++.+|.++...|++++|+..|++++..+|.+..++..++.++...++..++...+.+.....+.
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 555552 3335555555555555555555555555555555555555555555555555555555554444443322221
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHH
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 287 (561)
.....+..+..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|.++..+.
T Consensus 566 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 639 (899)
T TIGR02917 566 ------EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639 (899)
T ss_pred ------chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 12233445777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 008550 288 EYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366 (561)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (561)
.++.++...|++++|+..++++++..|++..++..++.++.. |++++|+..++.+....|.++..+..+|.++...|++
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 888888888888888888888888888888888888888888 8888888888888888888888899999999999999
Q ss_pred hHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
++|+..|++++...|+...+..++.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|+++++
T Consensus 720 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-KDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 447 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
..|+++.++..++.++...|+ .+|+.++++++...|++ .++..+|.++...|++++|..+|+++++.+|.++.++..+
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999999999999999999 88999999999999887 7888999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 008550 526 ERLEKQMK 533 (561)
Q Consensus 526 ~~l~~~~~ 533 (561)
+.+....|
T Consensus 878 ~~~~~~~g 885 (899)
T TIGR02917 878 ALALLATG 885 (899)
T ss_pred HHHHHHcC
Confidence 99988876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=371.07 Aligned_cols=515 Identities=18% Similarity=0.162 Sum_probs=415.4
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
++..+..+...|+++.|+.....++...+ ....+++.+|.+++..|++++|+..|++++..+|.++......
T Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTADP--------GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34455566667777777777766665522 2234778888888888888888888888888888877777666
Q ss_pred hhhhcccCCCCCCccccc-c--cCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhh
Q 008550 84 SRSSLSTSNRSSSPNSFN-V--SAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRG 159 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (561)
+...+..|++..+...+. . ..++.....+..|.++...|++++|+..++.+ ...|.....++.+|.++...|++++
T Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Confidence 777777777777655442 1 12233566777888888888888888888874 4446667777888888888888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008550 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (561)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (561)
|+..|.++++..|.+..++..++.++...++...+...+.......+. ........|.++...|++++|+..|+
T Consensus 314 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD------DPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888888888888888888888888777766655443332 12233455888899999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
++++.+|+++.++..+|.++...|++++|+..+.++++..|........++..+...|++++|+..++++....|.++.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 467 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999999999999999999999999888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS 397 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 397 (561)
+..+|.++.. |++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++...|.+ .++..++.++...|
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 8888888888 888899999988888888888888888888888888888888888888888876 56788888888888
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++++|+..+++++..+|.+...+..++.++... |++++|+..+++++...|.++.++..+|.++...|++++|+..|++
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888888888888888888888887 8888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+++..|.+ ..+..+|.++...|++++|...|+++++.+|++..++..++.+....+
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 88888766 778888888888888888888888888888888888888877776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=287.99 Aligned_cols=539 Identities=28% Similarity=0.350 Sum_probs=457.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCC-CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGE-TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
+|..++.+...+.++..+-++..+..+..+++. .+++........+....++.+.|..|+..|..++.+..
T Consensus 3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~-------- 74 (564)
T KOG1174|consen 3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRR-------- 74 (564)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhH--------
Confidence 567788888888999988888888887666555 47888888888889999999999999999999988731
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.+.....+... ....+...+.+.+..+..+.||...++-+.|+..+..++...+.+...+.++..+-.-++..+++-
T Consensus 75 -s~~r~s~~~~~--s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl 151 (564)
T KOG1174|consen 75 -LMMRHKNAVLV--AIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVL 151 (564)
T ss_pred -hhccccccccc--cccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHH
Confidence 11111111111 111123445668899999999999999999999999998888888999999999988888889999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
.|...+..+|--..+...+..+.....+.....-.... .+...+..|...+..|.++....-+..+..++-...
T Consensus 152 ~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~------~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~ 225 (564)
T KOG1174|consen 152 AYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAAT------VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN 225 (564)
T ss_pred hhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhee------cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh
Confidence 99999999998888877777776655444332222111 112233344444444555544445555566666777
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH
Q 008550 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (561)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (561)
...|+|...+..+|.+++..|++++|+..|+++..++|......-.+|.++...|+++.-..+...++........-|+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988778888887
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
-+..... +++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|.. +.|.++..+|...|++.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 7777666 999999999999999999999999999999999999999999999999999987 88999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008550 401 EALYAAREAMKAMPQSAKALKLVG-DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (561)
+|.-..+.++...|.++.++..+| .++.....--++|.+.+++++.+.|....+...++.++...|.+.+++.++++.+
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 999999999999999999999997 5555443556999999999999999999999999999999999999999999999
Q ss_pred hhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCCCCCCCCccchhhhccccCCchhcc
Q 008550 480 KDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAPEEDEENEVEDAEGDQEETD 559 (561)
Q Consensus 480 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (561)
...|+...+..+|+++...+.+.+|.++|..|+.++|++..+...+.++.+..+ ++++.++.++..++|.++++|+++
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~--~~DATdE~D~~~V~D~~G~~EE~~ 543 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD--ESDATDESDQQSVNDLTGLCEETN 543 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC--CCCccccccccchhhccCcchhhh
Confidence 999999999999999999999999999999999999999999999999999987 888888888889999999999988
Q ss_pred cC
Q 008550 560 LL 561 (561)
Q Consensus 560 ~~ 561 (561)
|.
T Consensus 544 L~ 545 (564)
T KOG1174|consen 544 LQ 545 (564)
T ss_pred cc
Confidence 63
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=361.04 Aligned_cols=508 Identities=14% Similarity=0.064 Sum_probs=380.7
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
+.|+++++.....++++.|......++.+.+.+ ++++..++.++...|++++|.+.+++++++.|.++....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~--------p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~ 100 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNN--------PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS 100 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 458899999999999999999999998885443 447899999999999999999999999999998886543
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchh-HHHHHHHHHHhcCChhh
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQ-MSLLMAKLYRNSRHNRG 159 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~-~~~~l~~~~~~~~~~~~ 159 (561)
......+ ...+....+.+|.++...|++++|+..++++ ...|.+.. .......+....|++++
T Consensus 101 ~~~~~~~---------------~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~ 165 (1157)
T PRK11447 101 SRTTMLL---------------STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPE 165 (1157)
T ss_pred HHHHHHh---------------cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHH
Confidence 2211110 0112233466777777888888888877774 33344432 22223333344577888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCC------------------------------
Q 008550 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH------------------------------ 209 (561)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 209 (561)
|+..|+++++.+|++..++..++.++...++..+++..+.+.....+...
T Consensus 166 A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 166 AINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHC
Confidence 88888888888888888888887777777776666555544322111000
Q ss_pred CChh---hH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008550 210 LDSS---RW---------------LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (561)
Q Consensus 210 ~~~~---~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 271 (561)
.... .. ......|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000 00 01113478889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChH--------------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH
Q 008550 272 FEKVRSIDPYIMT--------------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 272 ~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
|+++++.+|++.. .....+.++...|++++|+..|++++..+|.++.++..+|.++.. |++++|+
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999998643 123457788999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhccCCChhHHHHHHH------------------------------------------HHHhcCChhHHHHHHH
Q 008550 337 SYAEKSIRIDERHIPGYIMKGN------------------------------------------LLLSMKRPEAAVIAFR 374 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~ 374 (561)
..|+++++.+|.+..++..++. ++...|++++|+..|+
T Consensus 406 ~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 406 RYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998876654444 4456789999999999
Q ss_pred HhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH---------
Q 008550 375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA--------- 444 (561)
Q Consensus 375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a--------- 444 (561)
++++.+|++ .+++.++.++...|++++|+..+++++...|+++..++.++..+... +++++|+..++++
T Consensus 486 ~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~-~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 486 QRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS-DRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHhCCchhcChhH
Confidence 999999987 56888999999999999999999999988888887776666655554 5555555544331
Q ss_pred -------------------------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHH
Q 008550 445 -------------------------------LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA 492 (561)
Q Consensus 445 -------------------------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la 492 (561)
++..|.++..+..+|.++...|++++|+..|+++++..|++ .++..++
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la 644 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLI 644 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22356666666777777777777777777777777777765 6777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++...|++++|++.|+++++..|+++.++..++.+....+
T Consensus 645 ~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 645 EVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 77777777777777777777777777777766666665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=351.82 Aligned_cols=523 Identities=15% Similarity=0.116 Sum_probs=402.4
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCch--------hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSP--------HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYK 74 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 74 (561)
.+...++.++..|+++.|...++.++...+.+..... .......+.+|..+...|++++|+..|++++..+|
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p 143 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP 143 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC
Confidence 4566778889999999999999999998654433110 00112347788999999999999999999999988
Q ss_pred cCccccccc-hhhhcccCCCCCCccccc-c--cCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCccc-----------
Q 008550 75 IVPKQNSTS-SRSSLSTSNRSSSPNSFN-V--SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR----------- 139 (561)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~a~~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~----------- 139 (561)
..+...... .......|+.+++...+. + ..++...+++.+|.++...|++++|+..++++...+.
T Consensus 144 ~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 144 PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 665322211 111122466666655552 2 2345578999999999999999999999987532211
Q ss_pred ------------------------chh--------------------HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcH
Q 008550 140 ------------------------NLQ--------------------MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI 175 (561)
Q Consensus 140 ------------------------~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 175 (561)
... ....+|.++...|++++|+..|+++++.+|++.
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~ 303 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS 303 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 000 001347888899999999999999999999999
Q ss_pred HHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhh---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 008550 176 EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSR---------WLHRYVEAQCCIASNDYKGGLELFAELLQRFP 246 (561)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 246 (561)
.++..++.++...++..++...+.+.....|.... ... +......|.++...|++++|+..|++++..+|
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999998888777665554322 112 22234558889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH---------------------------------
Q 008550 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL--------------------------------- 293 (561)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------------- 293 (561)
+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999987766555544
Q ss_pred ---------HhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 294 ---------KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 294 ---------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
...|++++|+..|+++++.+|+++.+++.++.++.. |++++|+..+++++...|.++..++.++..+...
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 356777777777777777777777777777777777 7777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHhHHhCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 364 KRPEAAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
+++++|+..++++....... .....++..+...|++++|+.+++ ..|.++..+..+|.++... |
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~-g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQR-G 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHc-C
Confidence 77777777776653321111 113355667777777777777665 5788889999999999998 9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++ .++..+|.++...|++++|.+.|+++
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888876 78888999999999999999999999
Q ss_pred HhcCCccH------HHHHHHHHHHHh
Q 008550 512 LRINSQNE------AAKKGLERLEKQ 531 (561)
Q Consensus 512 l~~~p~~~------~~~~~l~~l~~~ 531 (561)
+...|+++ .++..++.+...
T Consensus 698 l~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 698 IPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred hhhCccCCcchhhHHHHHHHHHHHHH
Confidence 98876543 344445555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=321.84 Aligned_cols=434 Identities=15% Similarity=0.106 Sum_probs=268.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
+..+..+|..+++.|+|++|+..|++++...|+ ...+..+|.|+..+|
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--------------------------------~~~~~n~a~~~~~l~ 174 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------------------------------PVYYSNRAACHNALG 174 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------------------------hHHHHHHHHHHHHhC
Confidence 556889999999999999999999999998753 236889999999999
Q ss_pred CHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccc
Q 008550 123 ETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNR 201 (561)
Q Consensus 123 ~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (561)
++++|+..++. +...|.+..+++.+|.+|...|++++|+..|..+...++.+......+....... .+.......
T Consensus 175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~a~~~~~~~ 250 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK----FAESKAKEI 250 (615)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH----HHHHHHHHH
Confidence 99999999999 4566999999999999999999999999999988877765443322221111100 000111111
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhh
Q 008550 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDA---IIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~ 278 (561)
....+... ....+. +..+ .......+...+......+|.....+..++..+. ..+++++|+..|++++..
T Consensus 251 l~~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 251 LETKPENL-PSVTFV-----GNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred HhcCCCCC-CCHHHH-----HHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 11111110 011111 1111 1111222222233333334443334444443322 235566666666666654
Q ss_pred C---CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH
Q 008550 279 D---PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI 354 (561)
Q Consensus 279 ~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (561)
+ |....++..+|.++...|++++|+..+++++..+|..+..|..+|.++.. |++++|+..+++++..+|+++.+++
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2 44555666666666666666666666666666666666666666666666 6666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.+|.++...|++++|+..|++++.++|++ ..+..+|.++...|++++|+..+++++..+|+++.++..+|.++... |+
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~ 482 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ-NK 482 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-cC
Confidence 66666666666666666666666666665 44666666666666666666666666666666666666666666665 66
Q ss_pred hHHHHHHHHHHHHhCCCCHHHH------HHHHHH-HHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 434 REKAKKFYESALRLEPGYLGAA------LALAEL-HVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~------~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
+++|+..|++++.+.|.+...+ ...+.+ +...|++++|+..+++++..+|++ .++..+|.++...|++++|+
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666665532221 112222 223466666666666666666655 45666666666666666666
Q ss_pred HHHHHHHhcCCccHH
Q 008550 506 SHYEAALRINSQNEA 520 (561)
Q Consensus 506 ~~~~~al~~~p~~~~ 520 (561)
.+|++++++.+...+
T Consensus 563 ~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 563 KLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhccHHH
Confidence 666666666654333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=301.24 Aligned_cols=458 Identities=16% Similarity=0.073 Sum_probs=354.8
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
+.+.+..++..|+|+.|+......+...+. ...+..+|.+|+..|+|++|+..|+++++++|+++
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~------ 194 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS------ 194 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH------
Confidence 567788999999999999999998886431 23789999999999999999999999999987544
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.+++.+|.++..+|++++|+..+..+... +.+......+..... ...+..
T Consensus 195 -------------------------~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~ 245 (615)
T TIGR00990 195 -------------------------KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAES 245 (615)
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHH
Confidence 58999999999999999999988764322 222111111111111 134556
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
....+++..|.+...+..++....... ............ ..+......+.............++|++|+..|++++
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 246 KAKEILETKPENLPSVTFVGNYLQSFR-PKPRPAGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHcc-CCcchhhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 677777888876655555443321100 000000000000 0000111111111111111234578999999999999
Q ss_pred Hh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 243 QR---FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 243 ~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
.. .|....++..+|.++...|++++|+..|+++++.+|.....+..+|.++...|++++|+..++++++.+|+++.+
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 86 477788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS 397 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 397 (561)
++.+|.++.. |++++|+..|++++.++|++...+..+|.++...|++++|+..|++++...|++ .++..+|.++...|
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9999999999 999999999999999999999999999999999999999999999999999997 56999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCCHHH------HHHHHHHH-hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKA------LKLVGDVH-ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
++++|+..|++++...|.+... +...+..+ ... |++++|+..+++++.++|++..++..+|.++...|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~-~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK-QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999875332 22233333 335 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 471 AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 471 A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
|+.+|++++++.+...- ......+.+|.....++.+..|.
T Consensus 561 Ai~~~e~A~~l~~~~~e-------~~~a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 561 ALKLFERAAELARTEGE-------LVQAISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred HHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999998876421 11222455666666666555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=284.20 Aligned_cols=474 Identities=19% Similarity=0.194 Sum_probs=350.6
Q ss_pred hhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCc
Q 008550 18 DSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97 (561)
Q Consensus 18 ~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~ 97 (561)
+.|......++...+ ..+-.++-.|.+.|..|+|..|+.+|++++.++|..+
T Consensus 147 ~~A~a~F~~Vl~~sp--------~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-------------------- 198 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSP--------DNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-------------------- 198 (1018)
T ss_pred HHHHHHHHHHHhhCC--------cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--------------------
Confidence 445554445554432 2333778888899999999999999999999987554
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCC
Q 008550 98 NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSR---HNRGAVACYKECLRHCPF 173 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~p~ 173 (561)
++++..+|.|++++|+.+.|+..++. +..+|.+..++..||.+-.... .+..++..+.++...+|.
T Consensus 199 ----------aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 199 ----------ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred ----------CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 34677889999999999999999998 5667999999999998877655 477899999999999999
Q ss_pred cHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHH
Q 008550 174 FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHIL 252 (561)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 252 (561)
+|.+...|+..+...+++..+...+........... .....+|..|.++..+|+|++|..+|.++++.+|++ .-.+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~---~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS---IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 999999999999999999888777665554443222 222346677999999999999999999999999988 7888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC----CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+.+|+.|+..|+++.|..+|+++++..|++.+....+|.+|...+ ..+.|..++.++++..|.+.++|..++.++.
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998886 5688888999999999999888888888887
Q ss_pred hcCHhHHHHHHHHHHhc-----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-----CCCh------HHHHHHHHH
Q 008550 329 RKDERGALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDL------RSYQGLVHS 392 (561)
Q Consensus 329 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------~~~~~l~~~ 392 (561)
.++...++.+|.+++.. .+-.++.+.++|..++..|++++|...|..+... +++. ..-++++.+
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 76666667777766632 2223455555555555556555555555555544 1111 123444444
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCC---------------------------------------------------------
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQ--------------------------------------------------------- 415 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~--------------------------------------------------------- 415 (561)
+...++++.|.+.|..++..+|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 44444444444444444444443
Q ss_pred -----------------------------------------------------------CHHHHHHHHHHHhhhcCChHH
Q 008550 416 -----------------------------------------------------------SAKALKLVGDVHASNASGREK 436 (561)
Q Consensus 416 -----------------------------------------------------------~~~~~~~l~~~~~~~~~~~~~ 436 (561)
|..+-..+|.++... |++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k-g~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK-GRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc-cCchH
Confidence 333333344444433 44444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---DDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
|+.+|.++.+...+++++|.++|.||..+|+|..|++.|+.+++..- +..+...||++++..|.+.+|..+..+++.
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444443333456778888888888888888888888887653 337888889999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhcc
Q 008550 514 INSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 514 ~~p~~~~~~~~l~~l~~~~~ 533 (561)
+.|.++.+.++++.+..++.
T Consensus 745 ~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 745 LAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred hCCccchHHhHHHHHHHHHH
Confidence 99999998888888776554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=294.48 Aligned_cols=508 Identities=13% Similarity=-0.020 Sum_probs=329.1
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+..+......|++++|+......+...|.+ ..+++.++..|...|++++|+..++++++.+|.+......+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDN--------IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3455666677799999999999999885433 44789999999999999999999999999999887776665
Q ss_pred hhhhcccCCCCCCcccc-cc--cCCChHHHHHHHHHH--------HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHH
Q 008550 84 SRSSLSTSNRSSSPNSF-NV--SAINENEVKYKIASC--------HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~-~~--~~~~~~~~~~~~a~~--------~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~ 152 (561)
+.+ ++++.++..+ .+ ..++..++++.++.. |.+.++..+++. ...+...|......+.++++|.
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 333 6666666554 22 233446677777776 555555555555 2223333334445555677777
Q ss_pred hcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC-------------------------------cccHhHHhhccccc
Q 008550 153 NSRHNRGAVACYKECLRHCPFFIEAITALAELGAT-------------------------------PKDIISLFAQTPNR 201 (561)
Q Consensus 153 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~ 201 (561)
.+|++++|+..+.++.+..|.+......|+.++.. .++...+...+...
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77887778888877777777777666666555443 22222222222222
Q ss_pred cCCCCCCCCChhhHHH---------------------------HHHHHHHHHHccCH-----------------------
Q 008550 202 SGRAPFDHLDSSRWLH---------------------------RYVEAQCCIASNDY----------------------- 231 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~---------------------------~~~~a~~~~~~~~~----------------------- 231 (561)
....+..+ .+..|.. .+..+..+..++++
T Consensus 274 ~~~~~~~~-~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 274 KPLFTTDA-QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred cccccCCC-ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 11111100 0011110 00001111222222
Q ss_pred ------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------------------
Q 008550 232 ------KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV------------------------------ 275 (561)
Q Consensus 232 ------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------------------ 275 (561)
.++......+.+..|.++..+...+......|++++|...|+.+
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 22222222222223444444444444444444444444444433
Q ss_pred -----------------------------------HhhCCC--ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH
Q 008550 276 -----------------------------------RSIDPY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 276 -----------------------------------~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (561)
+...|. ++.++..+|.++.. +++.+|+..+.+++...|++.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~- 510 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW- 510 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-
Confidence 333344 56667777777766 677777777777777777643
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc
Q 008550 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 396 (561)
....++.++.. |++++|+..|+++....|. ...+..+|.++...|++++|+.+++++++..|.. ..+..++......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 24445555555 8888888888877665444 3456677778888888888888888888777766 3344555555666
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (561)
|++++|+..++++++.+|+ +.++..+|.++.+. |++++|+..|++++.++|+++.++..+|.++...|++++|+..++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888888888885 77888888888887 888888888888888888888888888888888888888888888
Q ss_pred HHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 477 RYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 477 ~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
++++..|++ .++..+|.++...|++++|+..|+++++++|++..+....+.+..
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 888888876 788888888888888888888888888888887666655555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=248.32 Aligned_cols=458 Identities=21% Similarity=0.270 Sum_probs=380.3
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
-...+.+|.++|..+.|+.|.-.++...... .......+-..+|..++- -..+.+.-..+
T Consensus 78 ~~~~y~laks~fd~kEf~Raa~fL~~~~s~k-----~~FL~lysk~La~~kk~~---------------e~~~~~l~~~~ 137 (559)
T KOG1155|consen 78 EKDIYLLAKSYFDCKEFERAAFFLQNCKSKK-----SAFLRLYSKYLAGEKKSE---------------EEMAELLGRLE 137 (559)
T ss_pred hcchhhhHhhhhhhHHHHHHHHHHHhcchHH-----HHHHHHHHHHHhhhHHHH---------------HHHHHhhccch
Confidence 3456889999999999999999988765521 111111111111111110 01111111122
Q ss_pred CHHHHHH---HHhc-C----CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHH
Q 008550 123 ETKAAIV---EMEG-I----PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (561)
Q Consensus 123 ~~~~A~~---~l~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (561)
.+..-.. .+.+ + .....++-.+++.|.++...|....|+..|..++...|.++.+|..|..+..........
T Consensus 138 ~~~~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l 217 (559)
T KOG1155|consen 138 SFSRINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL 217 (559)
T ss_pred hhhhhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH
Confidence 2222211 2221 1 112345667789999999999999999999999999999999999998887655444333
Q ss_pred hhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008550 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAIIGKNDEAILNFE 273 (561)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 273 (561)
...+ ....+|+..++.+.++....+.++++.-++..... .|.++..-...|.+.....++++|+..|+
T Consensus 218 ~~~l-----------~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Fe 286 (559)
T KOG1155|consen 218 VVGL-----------PSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFE 286 (559)
T ss_pred HhcC-----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3222 12278999999999999999999999999999988 89999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhH
Q 008550 274 KVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPG 352 (561)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~ 352 (561)
.+.+.+|...+-...+.++++-.++-.+-.-+.+.+..++.-.|+....+|+.|.. ++.++|+.+|+++++++|+...+
T Consensus 287 ei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 287 EIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred HHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 99999999998888999999888887777777788888999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA 431 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 431 (561)
|..+|.-|..+++...|+..|+++++++|.+ ++|+++|++|.-++.+.=|+-+|+++....|+++..|..+|.||.+.
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl- 445 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL- 445 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999987 89999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCh-HHHHHHHHHHHHcCCHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-~~~~~la~~~~~~g~~~~ 503 (561)
++.++|+++|.+++.....+..++..+|.+|.+.++..+|..+|++.++.. |.. .+...|+..+.+.+++++
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 999999999999999988888999999999999999999999999999843 222 567779999999999999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|-.+...++.-++.-.++...+..+.+.+
T Consensus 526 As~Ya~~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 526 ASYYATLVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 99999999999888888888777777655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=290.11 Aligned_cols=510 Identities=10% Similarity=-0.027 Sum_probs=380.4
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+..+..++..|++++|+..+...+...+ .....+..+|.+ +++++|+..|++++..+|++++....+
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--------~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~l 148 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRHP--------GDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLR 148 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCc--------ccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHH
Confidence 45678889999999999999999988743 222233434444 999999999999999999999988777
Q ss_pred hhh--------hcccCCCCCCcccccccCCC--hHHHHHHHHHHHHhcCCHHHHHHHHhcCC-CcccchhHHHHHHHHHH
Q 008550 84 SRS--------SLSTSNRSSSPNSFNVSAIN--ENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYR 152 (561)
Q Consensus 84 ~~~--------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~l~~~~-~~~~~~~~~~~l~~~~~ 152 (561)
+.. +...+....+.. .....+. +..+.+.++.+|..+|+|++|+..+.++. ..|.+...+..++.+|.
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLL 227 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 665 333333333343 3333333 35567777999999999999999988753 33555555555555554
Q ss_pred h-------------------------------cCChhhHHHHHHHHH---hcCCCcHHHHHHHHHHcCCc----------
Q 008550 153 N-------------------------------SRHNRGAVACYKECL---RHCPFFIEAITALAELGATP---------- 188 (561)
Q Consensus 153 ~-------------------------------~~~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------- 188 (561)
. .|+.++|...+++.- ..+|.+......+++.+...
T Consensus 228 q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 228 AGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred HhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 4 444444444433322 12244444444444433220
Q ss_pred -------------------ccHhHHhhccccccCCC-------------CCCCCC-----------hhhHHHHHHHHHHH
Q 008550 189 -------------------KDIISLFAQTPNRSGRA-------------PFDHLD-----------SSRWLHRYVEAQCC 225 (561)
Q Consensus 189 -------------------~~~~~~~~~~~~~~~~~-------------~~~~~~-----------~~~~~~~~~~a~~~ 225 (561)
+... +.+.+....... +..... +.........+...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYD-AAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHH-HHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0000 000000000000 000000 00011111123333
Q ss_pred HHccCHHHHHHHHHHH----------------------------------------------------------------
Q 008550 226 IASNDYKGGLELFAEL---------------------------------------------------------------- 241 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~---------------------------------------------------------------- 241 (561)
...|++++|..+|+++
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 4444444444444333
Q ss_pred -HHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH
Q 008550 242 -LQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 242 -~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (561)
+...|. ++.+++.+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..++++....|.+ .
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~ 543 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E 543 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H
Confidence 233455 78888999999987 899999999999999999764 46667888889999999999999988775554 5
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC
Q 008550 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS 397 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 397 (561)
.+..+|.++.. |++++|+.+++++++..|........++......|++++|+..++++++.+|+...+..+|.++.+.|
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 57888998888 99999999999999999998888877777777889999999999999999998777999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++.+|+++.++.++|.++...|++++|+..+++
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~-G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDS-GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+++..|+. .+....|.+.....+++.|.+.+.+...++|+.. +....+.+....
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~ 757 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTAN 757 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhc
Confidence 99999988 8999999999999999999999999999999988 777777665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=279.78 Aligned_cols=359 Identities=13% Similarity=0.010 Sum_probs=287.9
Q ss_pred HhcCCHHHHHHHHhcCCCc----ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHH
Q 008550 119 FALGETKAAIVEMEGIPSK----ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (561)
+++.+|+.---++...+.+ ..+.......+..+.+.|++++|...++.++...|.+..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l------------- 82 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW------------- 82 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------
Confidence 3444444444444433222 23334455666777788888888888888888888888887776
Q ss_pred hhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
+.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 83 ---------------------------~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 83 ---------------------------VISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred ---------------------------hhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566788888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC-ChhH
Q 008550 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER-HIPG 352 (561)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~ 352 (561)
++..+|+++.++..++.++...|++++|+..+++++...|+++..+..++. +.. |++++|+..+++++...|. ....
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 888888888888888888888888888888888888888888887766654 444 8888888888888887653 3344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHH----HHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE----ALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
...++.++...|++++|+..+++++...|++ .++..+|.++...|++++ |+..|++++..+|+++.++..+|.++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556778888888888888888888888887 557888888888888885 78888888888888888888888888
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 506 (561)
... |++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|+. ..+..+|.++...|++++|+.
T Consensus 295 ~~~-g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 295 IRT-GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 887 888888888888888888888888888888888888888888888888888876 555667888888888888888
Q ss_pred HHHHHHhcCCccH
Q 008550 507 HYEAALRINSQNE 519 (561)
Q Consensus 507 ~~~~al~~~p~~~ 519 (561)
.|+++++.+|++.
T Consensus 374 ~l~~al~~~P~~~ 386 (656)
T PRK15174 374 VFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHhChhhc
Confidence 8888888887754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=279.19 Aligned_cols=358 Identities=13% Similarity=0.034 Sum_probs=320.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcc
Q 008550 111 KYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK 189 (561)
Q Consensus 111 ~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 189 (561)
....+..+.+.|++++|+..++.+ ...|.++.++..+|.+....|++++|+..|++++..+|++..++..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l-------- 116 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV-------- 116 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH--------
Confidence 445678889999999999999985 55699999999999999999999999999999999999999988776
Q ss_pred cHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 008550 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI 269 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 269 (561)
|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+
T Consensus 117 --------------------------------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 117 --------------------------------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC
Q 008550 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (561)
..+++++...|+++.++..++ .+...|++++|+..+++++...|.. ......++.++.. |++++|+..+++++...|
T Consensus 165 ~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 165 SLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999988887664 4888999999999999999987644 4445566777888 999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChhH----HHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEA----AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
+++.++..+|.++...|++++ |+..|++++..+|++ .++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999996 899999999999998 579999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFA 496 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~ 496 (561)
+|.++... |++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|+. ++...+...+.
T Consensus 324 La~~l~~~-G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 324 YARALRQV-GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHH
Confidence 99999998 999999999999999999998877788999999999999999999999998875 34555556666
Q ss_pred HcCCHHHHHHHHHH
Q 008550 497 ATNMLQEALSHYEA 510 (561)
Q Consensus 497 ~~g~~~~A~~~~~~ 510 (561)
..+...+...+...
T Consensus 403 ~~~~~~~~~~W~~~ 416 (656)
T PRK15174 403 AVNLPPERLDWAWE 416 (656)
T ss_pred hcCCccchhhHHHH
Confidence 66555444334433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=241.02 Aligned_cols=425 Identities=18% Similarity=0.161 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
+..+-.+|+-+|+.|+|++||++|.+|++.+|+-| ..+..++-||...|
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep-------------------------------iFYsNraAcY~~lg 163 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP-------------------------------IFYSNRAACYESLG 163 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc-------------------------------hhhhhHHHHHHHHh
Confidence 55777899999999999999999999999987543 46778999999999
Q ss_pred CHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccc
Q 008550 123 ETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNR 201 (561)
Q Consensus 123 ~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (561)
+|++.++...+ +...|+...+++..+..+...|++.+|+....-..-..-.+-.....+++-....-....+-+.
T Consensus 164 d~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~---- 239 (606)
T KOG0547|consen 164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEK---- 239 (606)
T ss_pred hHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHh----
Confidence 99999998887 6777999999999999999999999998766544322211111111111110000000111111
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Q 008550 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIG---KNDEAILNFEKVRS 277 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~---~~~~A~~~~~~~~~ 277 (561)
.....+....+..++..|+.... .+.. . ...++.+ .+....-+.-+...+ .|.+|...+.+...
T Consensus 240 ~k~nr~p~lPS~~fi~syf~sF~----~~~~-------~-~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~ 307 (606)
T KOG0547|consen 240 LKENRPPVLPSATFIASYFGSFH----ADPK-------P-LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL 307 (606)
T ss_pred hcccCCCCCCcHHHHHHHHhhcc----cccc-------c-cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh
Confidence 11111111112222221111000 0000 0 0000000 000000000011111 23333333332221
Q ss_pred hCC----CC---------hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHH
Q 008550 278 IDP----YI---------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSI 343 (561)
Q Consensus 278 ~~~----~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~ 343 (561)
... .+ ..++...|..++-.|+.-.|...|+.++.++|..+..+..++.+|.. .+.++....|.++.
T Consensus 308 ~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 308 GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 100 00 23444455555555555555555555555555555555555555555 55555555555555
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
.++|.++++|+.+|.+++-++++++|+..|++++.++|++ -++..++.+.++++++++++..|+.+...+|+.++++..
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 5555555555555555555555555555555555555555 235555555555555555555555555555555555555
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCh-HHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHV-IEGRNGDAVSLLERYLKDWADD-SLHVKLAQV 494 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~ 494 (561)
.|.++..+ +++++|++.|.+++.+.|. ++..+...|.+.. ..+++..|+.+++++++.+|.. .++..+|.+
T Consensus 468 fAeiLtDq-qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 468 FAEILTDQ-QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred HHHHHhhH-HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 55555555 5555555555555555555 3333333222221 2255555555555555555554 455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 008550 495 FAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~~ 515 (561)
..+.|+.++|+++|++++.+.
T Consensus 547 ~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 555555555555555555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=279.34 Aligned_cols=404 Identities=13% Similarity=0.042 Sum_probs=339.3
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 008550 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (561)
Q Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 130 (561)
.+....|++++|+..|.++...+| .+..++..+|.++...|++++|+..
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~-------------------------------~~a~~~~~lA~~~~~~g~~~~A~~~ 71 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQ-------------------------------LPARGYAAVAVAYRNLKQWQNSLTL 71 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455779999999999999987654 3345688999999999999999999
Q ss_pred HhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCC
Q 008550 131 MEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH 209 (561)
Q Consensus 131 l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (561)
++++ ...|.++.++..++.++...|++++|+..++++++.+|++.. +..+
T Consensus 72 ~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l---------------------------- 122 (765)
T PRK10049 72 WQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL---------------------------- 122 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH----------------------------
Confidence 9994 555889999999999999999999999999999999999888 7665
Q ss_pred CChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH-----
Q 008550 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT----- 284 (561)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----- 284 (561)
|.++...|++++|+..++++++..|+++.++..++.++...+..++|+..++++.. .|....
T Consensus 123 ------------a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~ 189 (765)
T PRK10049 123 ------------AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEAD 189 (765)
T ss_pred ------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999998776 554311
Q ss_pred HHHHHHHHHH-----hcCCH---hHHHHHHHHHHhcCCCCHHHH-------HH-HHHHHHhcCHhHHHHHHHHHHhccCC
Q 008550 285 YMDEYAMLLK-----VKCDY---SKLSKLVHDLLSIDPSRPEVF-------VA-LSVLWERKDERGALSYAEKSIRIDER 348 (561)
Q Consensus 285 ~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~~-------~~-l~~~~~~~~~~~A~~~~~~~~~~~~~ 348 (561)
.......+.. ..+++ ++|+..++.+++..|.+|... .. ++.++..|++++|+..|+++++..|.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 1122222222 22334 789999999997655544321 11 44454449999999999999988654
Q ss_pred Ch-hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC-------
Q 008550 349 HI-PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------- 415 (561)
Q Consensus 349 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------- 415 (561)
.+ .+...+|.++...|++++|+..|++++...|.. .....++.++...|++++|+..++++....|.
T Consensus 270 ~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 270 IPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 33 344446999999999999999999999887754 34667788889999999999999999998763
Q ss_pred --------CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-H
Q 008550 416 --------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-S 486 (561)
Q Consensus 416 --------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 486 (561)
...++..++.++... |++++|+..+++++...|.++.++..+|.++...|++++|++.+++++...|++ .
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 135678899999998 999999999999999999999999999999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
+++.+|.++...|++++|...++++++..|+++.+...-...
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999776543333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-31 Score=236.30 Aligned_cols=480 Identities=19% Similarity=0.187 Sum_probs=380.7
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
+..+.++..+.+.+|..|..+++.+..+. . .+...+++|.+++-.|+|.+|....+.-.--
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~--------dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---------- 78 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT-N--------DPADIYWLAQVLYLGRQYERAAHLITTYKLE---------- 78 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc-C--------ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh----------
Confidence 45566778889999999999999998874 1 2235799999999999999998877654211
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCccc----------------
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-------PSKAR---------------- 139 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-------~~~~~---------------- 139 (561)
..+...++..+.|+.+..++++|..++... ...+.
T Consensus 79 ----------------------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~ 136 (611)
T KOG1173|consen 79 ----------------------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLM 136 (611)
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccccc
Confidence 133457889999999999999999998821 11111
Q ss_pred ---chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcc-cHhHHhhccccccCCCCCCCCChhhH
Q 008550 140 ---NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK-DIISLFAQTPNRSGRAPFDHLDSSRW 215 (561)
Q Consensus 140 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (561)
.....+..|.+|....+.++|...|.+++..++.+.++...+........ +....+..+.-.. ........
T Consensus 137 ~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~-----~~~ed~e~ 211 (611)
T KOG1173|consen 137 INLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM-----LTKEDVER 211 (611)
T ss_pred ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh-----hhhhHHHH
Confidence 12245678999999999999999999999999999999988865543322 1111111110000 00000000
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 216 LHRYVEAQCCIASNDYKGGLELFA-ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
+..+...... ...-+.+...-. ..+..-.+++++....+..++..+++.+..+.++..++.+|.+...+....-++.
T Consensus 212 l~~lyel~~~--k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~ 289 (611)
T KOG1173|consen 212 LEILYELKLC--KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLY 289 (611)
T ss_pred HHHHHHhhhh--hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHH
Confidence 0000000000 000000000000 1112223568889999999999999999999999999999999888766666999
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
..|+..+-..+-.++++.+|+.+..|+..|..|.. |++.+|.++|.++..++|....+|...|..+...|..++|+.+|
T Consensus 290 el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 290 ELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh----C
Q 008550 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL----E 448 (561)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~ 448 (561)
..|-++.|.. .....+|.-|...++++-|.++|.+++.+.|.+|-++..+|.+.+.. +.+.+|..+|++++.. .
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhcc
Confidence 9999998886 45778899999999999999999999999999999999999999988 9999999999999843 2
Q ss_pred CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 449 PG---YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 449 p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
+. ....+.++|.++.+++.+++|+..+++++...|.+ .++..+|.+|..+|+++.|+++|.+++-++|+|..+...
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 22 23467899999999999999999999999999988 899999999999999999999999999999999888887
Q ss_pred HHHHHHh
Q 008550 525 LERLEKQ 531 (561)
Q Consensus 525 l~~l~~~ 531 (561)
|....+.
T Consensus 529 L~~aie~ 535 (611)
T KOG1173|consen 529 LKLAIED 535 (611)
T ss_pred HHHHHHh
Confidence 7766543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=268.95 Aligned_cols=409 Identities=12% Similarity=0.018 Sum_probs=326.8
Q ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccch
Q 008550 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS 84 (561)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 84 (561)
-..++...-.|+++.|+.+....... .+..+.++..+|.++...|++++|+..|++++..+|.++
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------- 83 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------- 83 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Confidence 34566777889999999877766553 123345789999999999999999999999999987554
Q ss_pred hhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
.++..++.++...|++++|+..++++ ...|.++. +..+|.++...|++++|+..
T Consensus 84 ------------------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 84 ------------------------DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred ------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 57888999999999999999999995 55688889 99999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008550 164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243 (561)
Q Consensus 164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (561)
|+++++..|++..++..+ +.++...+..++|+..++++..
T Consensus 139 l~~al~~~P~~~~~~~~l----------------------------------------a~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEY----------------------------------------VQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHhCCCCHHHHHHH----------------------------------------HHHHHHCCChHHHHHHHHhCCC
Confidence 999999999999988776 5566667778888887776654
Q ss_pred hCCCCH-----HHHHHHHHHHH-----HhCCH---HHHHHHHHHHHhhCCCChHH-------HHHHHHHHHhcCCHhHHH
Q 008550 244 RFPNNI-----HILLEMAKVDA-----IIGKN---DEAILNFEKVRSIDPYIMTY-------MDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 244 ~~~~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~ 303 (561)
.|+.. .....+..+.. ..+++ ++|+..++.+++..|.++.. .......+...|++++|+
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44321 11122222222 22334 77888888888764444322 121122346778999999
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC----hhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 304 KLVHDLLSIDPSRP-EVFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
..|+++++..|..| .+...++.++.. |++++|+..|++++..+|.+ ......++.++...|++++|+..++++.
T Consensus 258 ~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 258 SEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999888765433 234446778888 99999999999988887765 2456667778889999999999999988
Q ss_pred HhCCC-------------h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 378 ELRPD-------------L---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 378 ~~~~~-------------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
...|. + .++..++.++...|++++|+..+++++...|.++.++..+|.++... |++++|+..+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~-g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR-GWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 87662 1 34678899999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 008550 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~ 495 (561)
++++..+|+++.+++.+|.++...|++++|...++++++..|++..-..+...+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985544554444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=246.09 Aligned_cols=521 Identities=13% Similarity=0.076 Sum_probs=409.3
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhc-----------hhHHHHHHHHHHHH
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRD-----------REYRRAIHTYKQAL 70 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al 70 (561)
+.|+..+..++.+|..++.+.+++..+.-+.............++..+|.-+... ..+..|..+|..+-
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 5678899999999999999998888774433333344555556666666555332 34678888898888
Q ss_pred hhcccCccccccchhhhcccCCC--CCCccccc-ccC--CChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcc-cchhH
Q 008550 71 QYYKIVPKQNSTSSRSSLSTSNR--SSSPNSFN-VSA--INENEVKYKIASCHFALGETKAAIVEMEGI-PSKA-RNLQM 143 (561)
Q Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~--~~a~~~~~-~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~-~~~~~ 143 (561)
.++-..+......+...+..|.. +.+...+. +.. ++..-.++..|.+.+..|+|..|+.+|+.+ ...| .-++.
T Consensus 122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 88765555555555555555544 34444442 222 334566777788888999999999999983 3333 44677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHh---HHhhccccccCCCCCCCCChhhHHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDII---SLFAQTPNRSGRAPFDHLDSSRWLHRYV 220 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (561)
...+|.++.+.|+.+.|+..|+++++++|.+..+...|+.+.....+.+ .++..+.......+ ..| .....
T Consensus 202 rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~---~nP---~~l~~ 275 (1018)
T KOG2002|consen 202 RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN---ENP---VALNH 275 (1018)
T ss_pred cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC---CCc---HHHHH
Confidence 8899999999999999999999999999999999999988765554442 23333322222222 122 23344
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhc
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVK 296 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 296 (561)
++.-++..|+|..+..+...++...... .+.++.+|++|..+|++++|..+|.++++.+|++ .-.++.+|+.+...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 5888999999999999999998865333 5669999999999999999999999999999998 67789999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c----CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K----DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
|+++.|+.+|+++++..|++.++...+|.+|.. + ..+.|..+..+++...|.+..+|..++.++....-+. ++.
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHH
Confidence 999999999999999999999999999999987 4 6679999999999999999999999999987655444 488
Q ss_pred HHHHhHHh------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CCCC-----HHHHHHHHHHHhhhcCChH
Q 008550 372 AFRGAQEL------RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS-----AKALKLVGDVHASNASGRE 435 (561)
Q Consensus 372 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~-----~~~~~~l~~~~~~~~~~~~ 435 (561)
.|..++.. .+..+..+++|..++..|++.+|...|..+... +++. ....+++|.++... ++++
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l-~~~~ 513 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL-HDTE 513 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh-hhhh
Confidence 88888754 122356899999999999999999999999876 2221 23579999999998 9999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|.+.|..+++..|...+++..+|......++..+|...+..++..+..+ .++..+|.++.....+..|.+-|+..++.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 99999999999999999999999988888899999999999999988766 89999999999999999999988877765
Q ss_pred CC--ccHHHHHHHHHHHH
Q 008550 515 NS--QNEAAKKGLERLEK 530 (561)
Q Consensus 515 ~p--~~~~~~~~l~~l~~ 530 (561)
-. .|+-+...|+.+..
T Consensus 594 ~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred hccCCchhHHHHhhHHHH
Confidence 32 35566666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=248.40 Aligned_cols=303 Identities=24% Similarity=0.330 Sum_probs=288.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+..+.....+-+..+|+..|.+.....++...++..+|+.|+.+++|++|..+|+.+.+..|-..+....+..+++...
T Consensus 322 ~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 322 GLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH
Confidence 34455566667778999999999777888889999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.-+--.+.+.++..+|+.|+.|..+|.+|.. ++++.|+++|+++++++|....+|..+|.-+....+++.|..+|+.+
T Consensus 402 ~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 402 DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 88888888899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
+..+|.+ .+|+.+|.+|.++++++.|.-.|+++++++|.+......+|.++.+. |+.++|+..|++|+.++|.++-..
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-KRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-hhhhHHHHHHHHHHhcCCCCchhH
Confidence 9999997 89999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
+..|.+++..+++++|+..+++..+..|+. .+++.+|.+|.+.|+.+.|+..|.-|.+++|.-..+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 999999999999999999999999999988 899999999999999999999999999999976653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=230.50 Aligned_cols=351 Identities=17% Similarity=0.161 Sum_probs=275.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHH
Q 008550 143 MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA 222 (561)
Q Consensus 143 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (561)
.+-..|.-+++.|+|++||.+|.+++..+|+.+..+..+ +
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNr----------------------------------------a 156 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNR----------------------------------------A 156 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhH----------------------------------------H
Confidence 344567777777788888888888887777765554444 6
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------H--------
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV------------------R-------- 276 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------~-------- 276 (561)
-||...|++++.++...++++.+|+...+++.++.++..+|++++|+....-. +
T Consensus 157 AcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 157 ACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKA 236 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777766543221 1
Q ss_pred ----h--hCCCChHHH-------------------------HHHHHH--HHhc---CCHhHHHHHHHHHHhcCC----CC
Q 008550 277 ----S--IDPYIMTYM-------------------------DEYAML--LKVK---CDYSKLSKLVHDLLSIDP----SR 316 (561)
Q Consensus 277 ----~--~~~~~~~~~-------------------------~~l~~~--~~~~---~~~~~A~~~~~~~~~~~~----~~ 316 (561)
+ ..|.-|.+. -.+... .... ..|..|...+.+...... .+
T Consensus 237 ~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n 316 (606)
T KOG0547|consen 237 KEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN 316 (606)
T ss_pred HHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc
Confidence 0 011111100 001111 1111 145566655555433211 11
Q ss_pred ---------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HH
Q 008550 317 ---------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS 385 (561)
Q Consensus 317 ---------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 385 (561)
..++...|..+.. |++-.|...|+.++.++|.+...++.+|.+|...++.++-...|.++..++|.+ .+
T Consensus 317 ~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 317 EIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred ccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 4577888888888 999999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
|+..|++++-++++++|+..|++++.++|++...+..++.+.+++ ++++++...|+.+.+..|+.++++...|.++..+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCC------h-H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCC
Q 008550 466 GRNGDAVSLLERYLKDWAD------D-S--LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~------~-~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 535 (561)
+++++|++.|++++++.|. + . ++-.+.... -.+++..|.+.+++|++++|....++..|+.+..+.+..
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999987 2 2 222222222 348999999999999999999999999999998877643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-27 Score=236.75 Aligned_cols=445 Identities=12% Similarity=-0.029 Sum_probs=353.3
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+..+...+..+.+.+++|+|+.|+..|+++++.+|.++. .+. .++.++.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------------------------------av~-dll~l~~ 79 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------------------------------QVD-DWLQIAG 79 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------------------------------hHH-HHHHHHH
Confidence 445668899999999999999999999999999886541 122 6778888
Q ss_pred hcCCHHHHHHHHhcCC-CcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
..|+.++|+..+++.. ..+........+|.++...|++++|+..|+++++.+|+++.++..++.++...++..+++..+
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 8899999999999955 224445555556889999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008550 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
.+.....+. .... ...+.++...++..+|+..++++++.+|++..++..+..++...|-...|.+...+--..
T Consensus 160 ~~l~~~dp~------~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 160 TELAERDPT------VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHhcccCcc------hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 888766553 1111 233555555777777999999999999999999999999999999999998776653322
Q ss_pred CCCChHHHHHHHH--HHH---------hcCC---HhHHHHHHHHHHhcCCCCHH---H----HHHHHHHHHh-cCHhHHH
Q 008550 279 DPYIMTYMDEYAM--LLK---------VKCD---YSKLSKLVHDLLSIDPSRPE---V----FVALSVLWER-KDERGAL 336 (561)
Q Consensus 279 ~~~~~~~~~~l~~--~~~---------~~~~---~~~A~~~~~~~~~~~~~~~~---~----~~~l~~~~~~-~~~~~A~ 336 (561)
.......+..... -.. ..++ .+.|+.-++.++...+..|. . ..-.-.++.. +++.+++
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1111111111111 111 1112 35577777777775444432 2 2222233344 9999999
Q ss_pred HHHHHHHhcc-CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC------h-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 337 SYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 337 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
..|+.+.... |-...+....|..|+..+++++|+.+|+.++...|. . .....|..++...+++++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999987655 334567788999999999999999999999886532 1 2357789999999999999999999
Q ss_pred HHHHCC---------------CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008550 409 AMKAMP---------------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 409 ~~~~~p---------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
.....| +.......++.++... |++.+|.+.+++.+...|.|+.++..+|.++...|.+.+|..
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~-gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL-NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 988554 2256677788888887 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 474 LLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
.++.+....|++ .+...+|.++..+|++.+|......++...|+++.+..
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999988 89999999999999999999999999999999997654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=210.16 Aligned_cols=476 Identities=13% Similarity=0.086 Sum_probs=322.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
++..++.+-.+..+.+|.-..+.++.. ... +..-..-..+|+++|++.+|.+|+++|+.++..-|+..+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivkn----kmf--~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~---- 273 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKN----KMF--PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD---- 273 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcc----ccc--CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchh----
Confidence 344444455555555555554444331 010 1111133556777777777777777777777766543211
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
-...+...+|..+++.|+|+.|+..|+.+.....+..+-+.+..+++..|+-++-.+.
T Consensus 274 ----------------------~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 274 ----------------------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEA 331 (840)
T ss_pred ----------------------hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHH
Confidence 1133455566777777777777777776544433444555666667777777777777
Q ss_pred HHHHHhcC--CCcHHH-------HHHHHHHcCCcc-----------cHhHHhhccccccCCCCCCCCChhhHHHHHHHHH
Q 008550 164 YKECLRHC--PFFIEA-------ITALAELGATPK-----------DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (561)
Q Consensus 164 ~~~~l~~~--p~~~~~-------~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (561)
|++++..- |+.... ...|..-.+... +.+++.-...+...
T Consensus 332 f~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-------------------- 391 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-------------------- 391 (840)
T ss_pred HHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--------------------
Confidence 77776431 110000 000000000000 00000000000000
Q ss_pred HHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhc--C
Q 008550 224 CCIASNDYKGGLELFAELLQRF---PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVK--C 297 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~ 297 (561)
-.-.-+|.....++-+.++.. |-..+.-...+--+++.|+++.|+++++-.-+.+.... .+-.++..+++.+ .
T Consensus 392 -pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 392 -PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred -cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 000011111122222222211 11122334456678889999999998876655544332 3344555555553 4
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++..|..+...++..+..++.++.+.|.+... |++++|.+.|..++..+.....+++++|..+..+|+.++|+.+|-+.
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 78889999999999998899999999987777 99999999999999988888899999999999999999999999887
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
..+--++ .+++.++.+|..+.+..+|++++.++..+-|++|.++..+|.+|-+. |+..+|..++-......|.+.+..
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhhhhhcccccCcchHHH
Confidence 7765555 67889999999999999999999999999999999999999999987 999999999988888999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
-.+|..|....-+++|+.+|+++.-+.|+. ......+.|+.+.|+|.+|.+.|+..-+..|.+.+...-|.++...+|
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999988999999999998888877 566778889999999999999999999999999999888888876665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-25 Score=204.91 Aligned_cols=411 Identities=17% Similarity=0.134 Sum_probs=349.1
Q ss_pred HHhcCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC-----CCcHHHHHHHHHHcCCcccH
Q 008550 118 HFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC-----PFFIEAITALAELGATPKDI 191 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~ 191 (561)
+.++.-|+.|...+++.... |.++.+|..-+.+-..+|+.+....++.+.+..- .-+.+.|..-+..+...+..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 34456678888888876444 7788888888888888888888777777776322 12334454444443333333
Q ss_pred hHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008550 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (561)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 271 (561)
..+...+....+....+......|... +..+...+-++-|+.+|..+++.+|....+|...+..-...|..++-..+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~d---a~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDD---AQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhh---HHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 322222222222223333344455544 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
+++++...|.....|.+++..+...|+...|..++..+++.+|++.++|+....+... ..++.|...|.++....|. .
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e 651 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E 651 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c
Confidence 9999999999999999999999999999999999999999999999999999999888 9999999999999987765 7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
.+|+.-+.+...+++.++|+.+++.+++..|+. ..|..+|+++..+++.+.|...|...++..|+.+..|..++.+-..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 888888999999999999999999999999998 5699999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------------------------
Q 008550 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------------------------ 485 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------ 485 (561)
. |+...|...++++.-.+|.+...|......-.+.|+.+.|...+.++++..|++
T Consensus 732 ~-~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 732 D-GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred h-cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999877654
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 486 -------SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 486 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++...|..++...++++|.++|.++++.+|++.++|..+-+.+...|
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 234788999999999999999999999999999999998888877665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=224.80 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008550 108 NEVKYKIASCHFA--LGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL 184 (561)
Q Consensus 108 ~~~~~~~a~~~~~--~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (561)
.+++..+|..+.. +-+..+|+..|++++.. ++...++..+|+.|+.+++|++|..+|+.+-+..|...+....+
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy--- 393 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY--- 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH---
Confidence 3455555555543 44557788877776544 55556667778888888888888888888877777543332222
Q ss_pred cCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 008550 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK 264 (561)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 264 (561)
..++....+--+--.+.+.+++.+|+.|+.|..+|.||-.+++
T Consensus 394 -------------------------------------ST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 394 -------------------------------------STTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred -------------------------------------HHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhH
Confidence 2222333333333334455666777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHH
Q 008550 265 NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSI 343 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~ 343 (561)
++.|+++|+++++++|....++..+|.-+.....++.|..+|+.++..+|.+..+|+.+|.+|.+ ++++.|.-.|++|+
T Consensus 437 h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777 77777777777777
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
.++|.+......+|.++.+.|+.++|+.+|++|+.++|.+.. .+..+.++...+++++|+..++++.+.-|++..+++.
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 777777777777777777777777777777777777776643 6666777777777777777777777777777777777
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+|.+|.+. |+.+.|+..|.-|..++|.-.
T Consensus 597 lgki~k~~-~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 597 LGKIYKRL-GNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHH-ccchHHHHhhHHHhcCCCccc
Confidence 77777776 777777777777777766543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=201.97 Aligned_cols=363 Identities=17% Similarity=0.177 Sum_probs=285.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+++.|.++-+.|....|+..|..++...|-+ ..++..++.+... .
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~-------------------------------W~AWleL~~lit~---~ 211 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF-------------------------------WSAWLELSELITD---I 211 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc-------------------------------hHHHHHHHHhhch---H
Confidence 56667777777777777777777777665421 1233333333211 1
Q ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 125 KAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH-CPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 125 ~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
+.+......++.+ .+.-.-+.++.++....+.++++.-++..... .|.+.-.....
T Consensus 212 e~~~~l~~~l~~~-~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~---------------------- 268 (559)
T KOG1155|consen 212 EILSILVVGLPSD-MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQI---------------------- 268 (559)
T ss_pred HHHHHHHhcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHH----------------------
Confidence 1111111111111 22333355666666666777777777766665 45443333222
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-.-.-+.+..++...+
T Consensus 269 ------------------A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 269 ------------------AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred ------------------HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 78888999999999999999999997777777777777777666666666677788888889
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
+....+|+.|...++.++|+.+|+++++++|....+|..+|.=|.. ++...|+..|+++++++|.+..+|+.+|.+|.-
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 363 MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
++.+.=|+-+|+++....|.+ +.|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.+. ++..+|..+|
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l-~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL-KDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 999999999999999999988 67999999999999999999999999999888899999999999998 9999999999
Q ss_pred HHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 442 ESALR-------LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 442 ~~a~~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
++.++ ..|+...+...|+.-+.+.+++++|..+...++.-.+
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99987 3455566777899999999999999988888776533
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-25 Score=226.30 Aligned_cols=478 Identities=13% Similarity=0.029 Sum_probs=373.3
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
+...+..+...|++..|..+...+....+.. ....++..+..++.+.++++.|...+..+....
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~------~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---------- 153 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFT------LPASTYDALVEACIALKSIRCVKAVYWHVESSG---------- 153 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------
Confidence 3455677788888888888777665432111 122356666677778888888888888877652
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
..++..++..+..+|.+.|++++|..+|+.++. .+...|..+...|.+.|++++|+..
T Consensus 154 --------------------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 154 --------------------FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred --------------------CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 113355777888999999999999999999864 4667899999999999999999999
Q ss_pred HHHHHhcCC-CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 164 YKECLRHCP-FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 164 ~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
|+++.+..+ .+...+..+...+...+................. ..+... .-.....|.+.|++++|..+|+++.
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~--~~d~~~---~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV--VGDTFV---SCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC--Ccccee---HHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999987654 2334445555555555544433322111111000 011111 1223778889999999999999873
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHH
Q 008550 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVF 320 (561)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 320 (561)
+.+..+|..+...|.+.|++++|+..|++..+.. ..+...+..+...+...|++++|.+++..+++.. +.+..++
T Consensus 287 ---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 287 ---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 4578899999999999999999999999987653 2245678889999999999999999999998875 5567788
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcC
Q 008550 321 VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFS 397 (561)
Q Consensus 321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 397 (561)
..+...|.+ |++++|...|+++.+ .+..+|..+...|.+.|+.++|+..|+++.+. .|+..++..+...+...|
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 999999999 999999999998754 35778999999999999999999999998875 577788999999999999
Q ss_pred CHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (561)
..++|.++|+.+.+..+ .+...+..+...+.+. |++++|.+.++++ ...| +..+|..+...+...|+.+.|...+
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~-G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE-GLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc-CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999987533 2456788899999998 9999999998864 2333 4567899999999999999999999
Q ss_pred HHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCccHHHHHHHHHH
Q 008550 476 ERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI--------------------------NSQNEAAKKGLERL 528 (561)
Q Consensus 476 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~l 528 (561)
+++++..|++ ..|..++.+|...|++++|.+.++...+. .|....++..+..+
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 9999999976 78899999999999999999999987654 24445666677777
Q ss_pred HHhcc
Q 008550 529 EKQMK 533 (561)
Q Consensus 529 ~~~~~ 533 (561)
...+.
T Consensus 598 ~~~~~ 602 (697)
T PLN03081 598 MKEIS 602 (697)
T ss_pred HHHHH
Confidence 66554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=220.08 Aligned_cols=300 Identities=17% Similarity=0.148 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML 292 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 292 (561)
..|..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...+..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 446668899999999999999999999999999999999999999999999999999998854332 2567889999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChh-----HHHHHHHHHHhcCCh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-----GYIMKGNLLLSMKRP 366 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 366 (561)
+...|++++|...|+++++..|.+..++..++.++.. |++++|+..++++++..|.+.. .+..+|.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999 9999999999999998876532 456789999999999
Q ss_pred hHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
++|+..|+++++..|+. .++..+|.++...|++++|+..+++++...|.+ ..++..++.++... |++++|+..++++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999999998887 578899999999999999999999999998876 45678889999998 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHH----hcCCc
Q 008550 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA---TNMLQEALSHYEAAL----RINSQ 517 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al----~~~p~ 517 (561)
++..|+... ...++.++...|++++|+..++++++..|+...+..+...+.. .|+..+|+..+++.+ ..+|+
T Consensus 276 ~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999997744 4889999999999999999999999999988555444444433 457888887777665 44565
Q ss_pred c
Q 008550 518 N 518 (561)
Q Consensus 518 ~ 518 (561)
+
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=218.57 Aligned_cols=299 Identities=18% Similarity=0.201 Sum_probs=236.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
.....+.+|..+...|++++|+..|+++++.+|++..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------- 75 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL-------------------------------------- 75 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH--------------------------------------
Confidence 344566678888888888888888888888888877666655
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (561)
|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|+++++.+|.+..++..++.++..
T Consensus 76 --a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 76 --GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred --HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 777778888888888888877643322 25677788888888888888888888888888888888888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPE-----VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
.|++++|+..++++++..|.+.. .+..+|.++.. |++++|+..++++++..|.+..++..+|.++...|++++|
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887766532 45567777777 8889999999998888888888888889999999999999
Q ss_pred HHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 370 VIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 370 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
+..+++++...|.+ .++..++.+|...|++++|+..++++++..|+.... ..++.++... |++++|+..++++++.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~-g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQ-EGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 99999988887775 347788888889999999999999988888876544 7888888887 8999999999999988
Q ss_pred CCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHh
Q 008550 448 EPGYLGAALALAELHVI--EGRNGDAVSLLERYLK 480 (561)
Q Consensus 448 ~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~ 480 (561)
.|++......++..... .|+..+|+..+++.++
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 88876555444433322 4588888888887765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-26 Score=203.54 Aligned_cols=431 Identities=14% Similarity=0.091 Sum_probs=309.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHH
Q 008550 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125 (561)
Q Consensus 46 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 125 (561)
.-..|+..|..|+|+.|+.+|.+++.++|.+- ..+.....+|..+|+|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh-------------------------------vlySnrsaa~a~~~~~~ 53 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH-------------------------------VLYSNRSAAYASLGSYE 53 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCcc-------------------------------chhcchHHHHHHHhhHH
Confidence 45689999999999999999999999987543 35666789999999999
Q ss_pred HHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCC
Q 008550 126 AAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGR 204 (561)
Q Consensus 126 ~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 204 (561)
+|++.-.+ +...|.-+..|..+|..+.-.|+|++|+..|.+.|+.+|++.....++++........
T Consensus 54 ~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~------------- 120 (539)
T KOG0548|consen 54 KALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA------------- 120 (539)
T ss_pred HHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh-------------
Confidence 99997777 6677999999999999999999999999999999999999999999998776111111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH--HHHHHHH-----h
Q 008550 205 APFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI--LNFEKVR-----S 277 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~--~~~~~~~-----~ 277 (561)
......+..|...- +.-..+.-..+.+.....+.++.+|.+...+..--++....|.....- ....... .
T Consensus 121 -~~~~~~p~~~~~l~--~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~ 197 (539)
T KOG0548|consen 121 -DQLFTKPYFHEKLA--NLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM 197 (539)
T ss_pred -hhhccCcHHHHHhh--cChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC
Confidence 00011222222211 111111111223333333444445544332221100000000000000 0000000 0
Q ss_pred hCCC---------------------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHH
Q 008550 278 IDPY---------------------IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGA 335 (561)
Q Consensus 278 ~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A 335 (561)
..|. -......+|...+...++..|++.+..++.++ .+...+...+.++.. |.+.+.
T Consensus 198 ~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c 276 (539)
T KOG0548|consen 198 AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAEC 276 (539)
T ss_pred CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHh
Confidence 0110 01234567888888888888888888888888 777777777878777 888887
Q ss_pred HHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 336 LSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 336 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+.....+++...... .....+|..+...++++.|+.+|.+++..... ..+..+....++++.....
T Consensus 277 ~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-------~~~ls~lk~~Ek~~k~~e~ 349 (539)
T KOG0548|consen 277 IELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-------PDLLSKLKEAEKALKEAER 349 (539)
T ss_pred hcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-------HHHHHHHHHHHHHHHHHHH
Confidence 777777766543321 23344666777888888888888887765443 3444555667777777777
Q ss_pred HHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HH
Q 008550 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SL 487 (561)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 487 (561)
..-.+|.-.......|..++.. |+|..|+..|.+++..+|+++..+.+.|-||.++|.+..|++..+++++++|+. ..
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~-gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKK-GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 7777887777778889999998 999999999999999999999999999999999999999999999999999987 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|..-|.++..+.+|++|.+.|+++++.+|++.++...+.++...+
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998888764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-25 Score=219.90 Aligned_cols=386 Identities=11% Similarity=0.094 Sum_probs=292.2
Q ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008550 106 NENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL 184 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (561)
..+...+..+....+.|+++.|+..|+++ ...|.++.....++.++...|+.++|+..+++++...|........+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal--- 108 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA--- 108 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH---
Confidence 34567788888888888888888888884 44466643434777777778888888888888883333333333222
Q ss_pred cCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 008550 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK 264 (561)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 264 (561)
|.++...|++++|+++|+++++.+|+++.++..++.++...++
T Consensus 109 -------------------------------------A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 109 -------------------------------------ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred -------------------------------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 6677777888888888888888888888888777788888888
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC------------
Q 008550 265 NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD------------ 331 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------------ 331 (561)
.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++.+++..+..+... |-
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 888888888888887775544 5556666566677668888888888888877766555555433 31
Q ss_pred ------------------------------------HhHHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhH
Q 008550 332 ------------------------------------ERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 332 ------------------------------------~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 368 (561)
.+.|+.-++..+...|..| .+....-.++...|++.+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1234555555555333333 233445567788999999
Q ss_pred HHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHhhhcCChHHHHHH
Q 008550 369 AVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMP------QSAKALKLVGDVHASNASGREKAKKF 440 (561)
Q Consensus 369 A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~~~~A~~~ 440 (561)
++..|+......... -+....|..|...+++++|+.+|+.++...| .+......+...+... +++++|..+
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~-e~~~~A~~~ 389 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES-EQLDKAYQF 389 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc-ccHHHHHHH
Confidence 999999987654332 3566789999999999999999999988653 2333346778888888 999999999
Q ss_pred HHHHHHhCC---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHH
Q 008550 441 YESALRLEP---------------GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEA 504 (561)
Q Consensus 441 ~~~a~~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A 504 (561)
+++..+..| +..++...++.++...|++.+|.+.+++.+...|.+ .++..+|.++...|.+.+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999988544 224567788999999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 505 LSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 505 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
...++.+..++|++..+...++.....++
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 99999999999999999999988887765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=190.67 Aligned_cols=317 Identities=17% Similarity=0.217 Sum_probs=279.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
......+..|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-.-|+..+.+++++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34445566699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHH---H----------HH--HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPE---V----------FV--ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~----------~~--~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
+.++|.+++|..-|+.++..+|++.. + |. .....+.. |+...|+......+++.|.+...+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 99999999999999999999996522 1 11 11222333 899999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH------------
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV------------ 423 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------ 423 (561)
+.||...|++..|+..++.+-++..++ +.++.++.+++..|+.+.++...+++++++|++...+-..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 7799999999999999999999999999999885443211
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLGAA----LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAAT 498 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~ 498 (561)
+...... ++|.++++..++.++.+|..+.+. ..+..|+...|++.+|+.....++...|++ +++...+..|...
T Consensus 276 ~e~~ie~-~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 276 AEQAIEE-KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHhh-hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 1222334 888999999999999999865543 456788899999999999999999999998 9999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 499 NMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
..|+.|+..|++|.+.+|+|..+...+.+..+
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999887665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-24 Score=194.52 Aligned_cols=464 Identities=15% Similarity=0.061 Sum_probs=385.8
Q ss_pred HhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccc-----cccC---CChHHHHHHHHHHHHhcCC
Q 008550 52 SLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-----NVSA---INENEVKYKIASCHFALGE 123 (561)
Q Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~---~~~~~~~~~~a~~~~~~~~ 123 (561)
++.+..-|+.|.+.+.++-+.-|+.+......++..-..|+..-..... ++.. .-+-+.++.-|..+-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 3455678999999999999999888877666655544444222111110 0000 0114566777777777777
Q ss_pred HHHHHHHHhcC----CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccc
Q 008550 124 TKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (561)
Q Consensus 124 ~~~A~~~l~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (561)
.-.+..++..+ ....+....|..-+..+.+.+-++-|+.+|..+++.+|.....|...+..-...|..++....+.
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666553 23345567888999999999999999999999999999999999988877666666665555555
Q ss_pred cccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
+.....| .....|+.+ +......|+...|..++.++++.+|++.++|+.-..+.....+++.|...|.++....
T Consensus 575 kav~~~p---kae~lwlM~---ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 575 KAVEQCP---KAEILWLMY---AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHhCC---cchhHHHHH---HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 5554444 234455544 8888888999999999999999999999999999999999999999999999999977
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
|.. .+|+..+.+...+++.++|+.+++++++.+|+.+..|..+|+++.+ ++.+.|...|...++..|..+..|..++.
T Consensus 649 gTe-Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTE-RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred Ccc-hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 755 7889999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (561)
+-...|..-.|...++++.-.+|++. .|.....+-.+.|+.+.|.....++++..|++...|..-..+.-.- ++-..+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~-~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP-QRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc-ccchHH
Confidence 99999999999999999999999984 5889999999999999999999999999999988887766665554 554444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 438 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
+. +++....++.++...|.++....++++|.++|.++++.+|+. ++|..+-..+...|.-++-.+.|.++..-.|
T Consensus 807 ~D----ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 807 ID----ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HH----HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 44 455567788999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred ccHHHHHHHHH
Q 008550 517 QNEAAKKGLER 527 (561)
Q Consensus 517 ~~~~~~~~l~~ 527 (561)
.+...|.....
T Consensus 883 ~hG~~W~avSK 893 (913)
T KOG0495|consen 883 THGELWQAVSK 893 (913)
T ss_pred CCCcHHHHHhh
Confidence 99998887655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-24 Score=185.08 Aligned_cols=387 Identities=19% Similarity=0.186 Sum_probs=304.5
Q ss_pred CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHH
Q 008550 37 TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS 116 (561)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 116 (561)
...+..++-++.+|..++..|++.+|+..|..|++.+|++ ..+.|..|.
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-------------------------------Y~aifrRaT 80 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-------------------------------YQAIFRRAT 80 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-------------------------------HHHHHHHHH
Confidence 3456778899999999999999999999999999998743 458999999
Q ss_pred HHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHH---HHHHHHHHcCCcccHh
Q 008550 117 CHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIE---AITALAELGATPKDII 192 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~~~ 192 (561)
+|+.+|+..-|+..|.++ ...|+...+....|.+++++|.+++|...|.++++.+|.+.. +...++.+
T Consensus 81 ~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~-------- 152 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI-------- 152 (504)
T ss_pred HHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH--------
Confidence 999999999999999995 556888889999999999999999999999999999996543 33333211
Q ss_pred HHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008550 193 SLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272 (561)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 272 (561)
...| .+......++..|++..|+.....+++..|-++..+...+.||...|++..|+..+
T Consensus 153 -------------------~e~~-~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 153 -------------------QEHW-VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred -------------------HHHH-HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1111 22233666778899999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhH
Q 008550 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPG 352 (561)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 352 (561)
+.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-..-.+ .+..+.+..
T Consensus 213 k~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl---kKv~K~les-------------- 275 (504)
T KOG0624|consen 213 KQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL---KKVVKSLES-------------- 275 (504)
T ss_pred HHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH---HHHHHHHHH--------------
Confidence 999999999999999999999999999999999999999999886544221111 222222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
+......++|.+++...++.++.+|.. ..+..+..|+...|++.+|++.+.+++..+|++..++...+.+|
T Consensus 276 ----~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 276 ----AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 223345678888999999999988884 23556788899999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 507 (561)
.-. ..|+.|+..|+++.+.++++..+...+- .-+++.+.....+.|-.||.- +.-...+-.+.
T Consensus 352 l~d-E~YD~AI~dye~A~e~n~sn~~~reGle--------------~Akrlkkqs~kRDYYKILGVk--RnAsKqEI~KA 414 (504)
T KOG0624|consen 352 LGD-EMYDDAIHDYEKALELNESNTRAREGLE--------------RAKRLKKQSGKRDYYKILGVK--RNASKQEITKA 414 (504)
T ss_pred hhh-HHHHHHHHHHHHHHhcCcccHHHHHHHH--------------HHHHHHHHhccchHHHHhhhc--ccccHHHHHHH
Confidence 987 9999999999999999999876654332 222223322222344444432 22334455556
Q ss_pred HHH-HHhcCCccHH
Q 008550 508 YEA-ALRINSQNEA 520 (561)
Q Consensus 508 ~~~-al~~~p~~~~ 520 (561)
|++ |.+-.|+|..
T Consensus 415 YRKlAqkWHPDNFq 428 (504)
T KOG0624|consen 415 YRKLAQKWHPDNFQ 428 (504)
T ss_pred HHHHHHhcCCcccc
Confidence 655 4556787643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-24 Score=191.65 Aligned_cols=439 Identities=15% Similarity=0.145 Sum_probs=345.7
Q ss_pred HHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHH
Q 008550 49 LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAI 128 (561)
Q Consensus 49 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 128 (561)
+-+-...+.+|.-|+-+-+++..+. .++.--+.+|+|+.-.|++..|.
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~--------------------------------~dp~d~~~~aq~l~~~~~y~ra~ 69 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT--------------------------------NDPADIYWLAQVLYLGRQYERAA 69 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc--------------------------------CChHHHHHHHHHHHhhhHHHHHH
Confidence 3346677889999998888887764 33345688999999999999999
Q ss_pred HHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR-HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
..+..-.....+....++.+.++....++++|..++.+.-. .+|-....... +......+.. +
T Consensus 70 ~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~-~~~l~~n~~~----~----------- 133 (611)
T KOG1173|consen 70 HLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA-ANTLELNSAG----E----------- 133 (611)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh-hceeccCccc----c-----------
Confidence 99887655677888999999999999999999998885510 01110000000 0000000000 0
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------------CHHHHHH
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-----------------KNDEAIL 270 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------------~~~~A~~ 270 (561)
+..........+++|.+|....+.++|...|.+++..++.+.++...+-...+-.- ...+-++
T Consensus 134 ~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~ 213 (611)
T KOG1173|consen 134 DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLE 213 (611)
T ss_pred cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHH
Confidence 00011111234667999999999999999999999999888776665543332211 1111111
Q ss_pred HHHHHH----------hhCC--------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC
Q 008550 271 NFEKVR----------SIDP--------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD 331 (561)
Q Consensus 271 ~~~~~~----------~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 331 (561)
.+-++. ...| .+++.....+..++..+++.+..++.+..++.+|-++.++.....++.. |+
T Consensus 214 ~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 214 ILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGK 293 (611)
T ss_pred HHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcc
Confidence 111111 0112 3456778888999999999999999999999999987765543335555 99
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
..+-...-.+.+...|+.+-.|+..|..|...|++.+|..+|.++..++|.. ++|...|..+...|..++|+..|..+-
T Consensus 294 ~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred cchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999999999999998 889999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----
Q 008550 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----- 485 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----- 485 (561)
+..|........+|.-|... ++++.|.++|.+|+.+.|.+|-++..+|.+.+..+.+.+|..+|++++..-++.
T Consensus 374 rl~~G~hlP~LYlgmey~~t-~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 374 RLMPGCHLPSLYLGMEYMRT-NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred HhccCCcchHHHHHHHHHHh-ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999998 999999999999999999999999999999999999999999999998433221
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCCC
Q 008550 486 ---SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVD 536 (561)
Q Consensus 486 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 536 (561)
..+.++|-++.+++.+++|+.+|++++.+.|.+..++..++.++..+|..+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 568999999999999999999999999999999999999999999887443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-24 Score=222.75 Aligned_cols=442 Identities=10% Similarity=-0.012 Sum_probs=288.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
+|..+-..|.+.|++++|+..|.++..... .++...+..+...+...|+.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~------------------------------~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSV------------------------------DPDLMTITSVISACELLGDE 304 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------------------------CCChhHHHHHHHHHHhcCCh
Confidence 566666667777777777777777765420 01112233333334444444
Q ss_pred HHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 125 KAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 125 ~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
+.|.+++..+... ..+..++..+...|.+.|++++|..+|+++.. .+...|..+...+.+.++.++++..+....
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444444432211 22333444444444444444444444444321 122233334444444444444333333221
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (561)
.... .++...+... -..+...|+++.|.+++..+.+.. ..+..++..+...|.+.|++++|.+.|++..+ .
T Consensus 382 ~~g~--~Pd~~t~~~l---l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~ 453 (857)
T PLN03077 382 QDNV--SPDEITIASV---LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K 453 (857)
T ss_pred HhCC--CCCceeHHHH---HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C
Confidence 1100 0111111111 235556788888888888777753 33466777778888888888888888877543 3
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNL 359 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 359 (561)
+...|..+...+.+.|+.++|+..|+++....+.+...+..+-..+.. |+.+.+...+..+++... .+......+...
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 456677777888888888888888888776544455555555556666 888888888777776532 234455677788
Q ss_pred HHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHhhhcCChHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKA 437 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A 437 (561)
|.+.|+.++|...|+.. .|+..+|..+...|...|+.++|+.+|++..+. .| +...+..+-..+... |.+++|
T Consensus 534 y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~-g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRS-GMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhc-ChHHHH
Confidence 99999999999998886 566677999999999999999999999988774 35 444555555667776 999999
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 438 KKFYESALRLEP--GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 438 ~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
..+|+.+.+..+ .+...+..+..++.+.|++++|.+.++++ ...|+..+|..+-..+...|+.+.+....+++++++
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999998875432 23467888999999999999999999885 456777888888888888899999999999999999
Q ss_pred CccHHHHHHHHHHHHhcc
Q 008550 516 SQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 516 p~~~~~~~~l~~l~~~~~ 533 (561)
|++...+..+..++...+
T Consensus 688 p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 688 PNSVGYYILLCNLYADAG 705 (857)
T ss_pred CCCcchHHHHHHHHHHCC
Confidence 999999998888887665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-22 Score=205.08 Aligned_cols=398 Identities=12% Similarity=0.034 Sum_probs=212.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+...-..+.+.|++++|+..|+++...+... .+...+..+...+.+.|..
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-----------------------------~~~v~~~~li~~~~~~g~~ 422 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-----------------------------MDKIYHAKFFKACKKQRAV 422 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-----------------------------chHHHHHHHHHHHHHCCCH
Confidence 44445556678999999999999987753110 1122333455667788999
Q ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 125 KAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 125 ~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
++|..+++.+.. .+...|..+-..+.+.|++++|..+|.++.+... .+...+..+...+.+.++...+...+.....
T Consensus 423 ~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 423 KEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 999999988765 4567788888888999999999999999987653 3455666665554444444444433333221
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI---- 278 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 278 (561)
... ..+...|.. ....+.+.|++++|+.+|.++.... ..+..+|..+...+.+.|++++|.+.|..+...
T Consensus 501 ~Gv--~PdvvTyna---LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 501 AGV--EANVHTFGA---LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred cCC--CCCHHHHHH---HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 110 011122211 1444445555555555555554321 122444555555555555555555555555431
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc--cCCChhHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRI--DERHIPGYI 354 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~ 354 (561)
.|+ ...+..+...|.+.|++++|.++|+.+.+.. +.++..|..+...|.+ |++++|+.+|.++... .| +...+.
T Consensus 576 ~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~Tyn 653 (1060)
T PLN03218 576 DPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFS 653 (1060)
T ss_pred CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 222 2344444555555555555555555555443 2334445555555555 5555555555555443 22 233444
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhc
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNA 431 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 431 (561)
.+...+.+.|++++|..++..+.+. .|+..+|..+...|.+.|++++|.++|+++.... ..+...|..+...|.+.
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~- 732 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG- 732 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-
Confidence 5555555555555555555555443 2333445555555555555555555555543321 12344455555555554
Q ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 432 SGREKAKKFYESALRLE-PGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
|++++|.+.|+++.... ..+...+..+...+.+.|++++|..++..+.+.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555555555544321 112334444445555555555555555555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-23 Score=194.65 Aligned_cols=418 Identities=19% Similarity=0.123 Sum_probs=331.2
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL 121 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 121 (561)
....+-.+.-.+...|+|..+.+.|++++... +...+.++.++.++...
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------------------------------~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------------------------------FGEHERWYQLALSYSAA 370 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------------------------------hhhHHHHHHHHHHHHHh
Confidence 34466677778888999999999999988752 35567899999999999
Q ss_pred CCHHHHHHHHhc-CCCc--ccchhHHHHHHHHH-HhcCChhhHHHHHHHHHhcCCCc-----HHHHHHHHHHcCCcccHh
Q 008550 122 GETKAAIVEMEG-IPSK--ARNLQMSLLMAKLY-RNSRHNRGAVACYKECLRHCPFF-----IEAITALAELGATPKDII 192 (561)
Q Consensus 122 ~~~~~A~~~l~~-~~~~--~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~ 192 (561)
|.-..|+.+++. +... |.++..++..+.++ .+.|..++++.+-++++...-.. +..+..++-.+...-
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--- 447 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--- 447 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh---
Confidence 999999999988 4544 77777777666655 46889999999999998744211 111222211111000
Q ss_pred HHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008550 193 SLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272 (561)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 272 (561)
..+..+. .+.....++++.++++++.+|+|+.+.+.++.-|...++.+.|+.+.
T Consensus 448 -----------------~~a~~~s---------eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~ 501 (799)
T KOG4162|consen 448 -----------------RQANLKS---------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYA 501 (799)
T ss_pred -----------------hcCCChH---------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHH
Confidence 0000000 11223568899999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 273 EKVRSI-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 273 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
++++++ ..+++.+|..++.++...+++.+|+.+...++...|++.........+-.. ++.++|+..+...+.+-....
T Consensus 502 ~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~ 581 (799)
T KOG4162|consen 502 REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEY 581 (799)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhh
Confidence 999999 556689999999999999999999999999999999987776666666666 999999998887776543222
Q ss_pred h---------HHHHHHHHHHhcCChhHHHHHHHHhHHh--------C-----C--------Ch------HHHHHHHHHHH
Q 008550 351 P---------GYIMKGNLLLSMKRPEAAVIAFRGAQEL--------R-----P--------DL------RSYQGLVHSYL 394 (561)
Q Consensus 351 ~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~-----~--------~~------~~~~~l~~~~~ 394 (561)
. .....+......++..+|++..+.+... . | +. ..|...+..+.
T Consensus 582 ~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~ 661 (799)
T KOG4162|consen 582 GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFL 661 (799)
T ss_pred hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 1 2222333334444555565555544322 0 1 11 24678899999
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS- 473 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~- 473 (561)
..+..++|..++.++-.++|..+..|+..|.++... |.+.+|...|..++.++|+++.....+|.++.+.|+..-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~ 740 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKR 740 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHH
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999988888
Q ss_pred -HHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 474 -LLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 474 -~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
.+..+++.+|.+ ++|+.+|.++.+.|+.++|.++|..++++.+.+|.
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999987 99999999999999999999999999999988774
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-23 Score=199.43 Aligned_cols=365 Identities=17% Similarity=0.153 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcC
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA 186 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 186 (561)
....+..|......|++++|..++.. |...|.++.+|+.||.+|.++|+.+++..++-.+-.++|.+.+.|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----
Confidence 56778888888999999999999998 567799999999999999999999999999999999999999999887
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 266 (561)
+....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|+..
T Consensus 214 -----------------------------------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 214 -----------------------------------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred -----------------------------------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence 677778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCh-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh-cCHhHHHHH
Q 008550 267 EAILNFEKVRSIDPYIM-----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWER-KDERGALSY 338 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~A~~~ 338 (561)
.|+..|.+++...|... ..-...+..+...++-+.|++.++.++.... ...+.+..++.++.. ..++.|...
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 99999999999999321 2234457778888888999999999988322 234456677777777 889988888
Q ss_pred HHHHHhc--cCC--------------------------ChhH-HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh--HHHH
Q 008550 339 AEKSIRI--DER--------------------------HIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQ 387 (561)
Q Consensus 339 ~~~~~~~--~~~--------------------------~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 387 (561)
....... .++ +..+ ...++.+..+.++..+++..+..--...|.. ..+.
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~ 418 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL 418 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence 7765541 000 1122 4445555556666666666555444434555 4589
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
.++.++...|++.+|+.++..+....+. +..+|+.+|.|+... |.+++|+.+|++++...|++.++...|+.++.++|
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 9999999999999999999998876653 477999999999999 99999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 467 RNGDAVSLLERYLKDWA----------DDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 467 ~~~~A~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+.++|.+.++....-++ ...+...+..++...|+.++=+..-...+.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999998663331 115778899999999999886555444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-24 Score=187.14 Aligned_cols=445 Identities=13% Similarity=0.135 Sum_probs=343.2
Q ss_pred HHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhc
Q 008550 9 TALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSL 88 (561)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 88 (561)
..++++..|+.|+......+...+ ......++..+..+|-.+.+.|+|+.|+..|...++..|...
T Consensus 245 ni~~kkr~fskaikfyrmaldqvp---sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~----------- 310 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVP---SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI----------- 310 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhcc---ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-----------
Confidence 445678899999999998888754 444567888999999999999999999999999999876443
Q ss_pred ccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcc------------cchh-HHHHH---HHHHH
Q 008550 89 STSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKA------------RNLQ-MSLLM---AKLYR 152 (561)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~------------~~~~-~~~~l---~~~~~ 152 (561)
.-+.+..|++..|+-++-.+.|.++...| +++. .+..- ...+.
T Consensus 311 ---------------------a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 311 ---------------------AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ---------------------hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 56778899999999988888887743221 1211 11111 11111
Q ss_pred --hcCChhhHHHHHHHHHhc-----CCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHH
Q 008550 153 --NSRHNRGAVACYKECLRH-----CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225 (561)
Q Consensus 153 --~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (561)
...+...|......+.++ .|+.......-.+.. ++-.. .+.....-..++..+
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l-------k~s~~-------------~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL-------KASQH-------------AELAIDLEINKAGEL 429 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH-------HHhhh-------------hhhhhhhhhhHHHHH
Confidence 112223343333333322 232211110000000 00000 000111123448889
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAII--GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
+++|+++.|++++.-.-+.+... ..+-..+..+++.+ .++..|..+...++.++..++.++.+.|.+.+..|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 99999999999988766554432 33445566666664 3788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
...|++++..+....++++++|..+.. |+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|++++.++..+-|
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC
Confidence 999999999888889999999999999 9999999999999888888999999999999999999999999999999999
Q ss_pred ChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 382 DLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 382 ~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
++++ +..++.+|-+.|+..+|.+++-.....+|.+.+..-++|..|... .-+++|+.+|+++.-+.|+...-...++.
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 9865 889999999999999999999999999999999999999999997 88899999999999999998888888999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEA 510 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 510 (561)
|+.+.|+|.+|...|+..-+..|.+ +.+..+.++.-.+|- .+|.++-.+
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 9999999999999999999999988 666667777766663 334444333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-23 Score=197.59 Aligned_cols=456 Identities=15% Similarity=0.090 Sum_probs=313.2
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHH
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 118 (561)
.+.....++-.|+.+|-.|++++|...+.++++++|.++ .+++.+|.+|
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~-------------------------------~ay~tL~~Iy 183 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP-------------------------------IAYYTLGEIY 183 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch-------------------------------hhHHHHHHHH
Confidence 345577888899999999999999999999999998766 4678888888
Q ss_pred HhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhc
Q 008550 119 FALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ 197 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (561)
-++|+.+++....-. ....|.+.+.|..++....++|++.+|+-+|.++++.+|.++......+.++.+.|+...+...
T Consensus 184 EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 184 EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence 888888888774443 4455777788888888888888888888888888888888888888888888888887777777
Q ss_pred cccccCCCCCCCCChhhHHH-HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 198 TPNRSGRAPFDHLDSSRWLH-RYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
..+.....|+. +-..+.. .+..+..+...++-+.|++.+..++.. +....+.+..++.+++....++.|......
T Consensus 264 f~~l~~~~p~~--d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 264 FLQLLQLDPPV--DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHhhCCch--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 76666555511 1111111 122244455555556666666666552 112223344445555555555555444333
Q ss_pred HHh---------------------------------------------------------------hCC-CChHHHHHHH
Q 008550 275 VRS---------------------------------------------------------------IDP-YIMTYMDEYA 290 (561)
Q Consensus 275 ~~~---------------------------------------------------------------~~~-~~~~~~~~l~ 290 (561)
... ..| +.++.+..++
T Consensus 342 ~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a 421 (895)
T KOG2076|consen 342 DRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLA 421 (895)
T ss_pred HhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHH
Confidence 222 112 2246678888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (561)
..+...|++.+|+.++..+....+.. ..+|+.+|.||.. |.++.|+.+|++++...|.+.++.+.++.++.++|+.++
T Consensus 422 ~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 422 DALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred HHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHH
Confidence 89999999999999999888766544 5689999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhCCCh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------HCCCC---------------
Q 008550 369 AVIAFRGAQELRPDL----------RSYQGLVHSYLQFSKVKEALYAAREAMK-------AMPQS--------------- 416 (561)
Q Consensus 369 A~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~--------------- 416 (561)
|.+.+.....-++.. ........++...|+.++=+......+. ..|.+
T Consensus 502 alEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~ 581 (895)
T KOG2076|consen 502 ALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKR 581 (895)
T ss_pred HHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccc
Confidence 999998876333221 1345667777788877764443333221 11211
Q ss_pred --------------------------------------------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC--C
Q 008550 417 --------------------------------------------AKALKLVGDVHASNASGREKAKKFYESALRLEP--G 450 (561)
Q Consensus 417 --------------------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p--~ 450 (561)
...+..+..++.+. +++++|......++...- .
T Consensus 582 ~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~-~r~qeAl~vv~~a~~~~~f~~ 660 (895)
T KOG2076|consen 582 YSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKL-QRVQEALSVVFTALEAYIFFQ 660 (895)
T ss_pred cchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhhhhhc
Confidence 23344555666776 888888888888776421 1
Q ss_pred CH----HHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC----------------------------------h--
Q 008550 451 YL----GAALALAELHVIEGRNGDAVSLLERYLKD-----WAD----------------------------------D-- 485 (561)
Q Consensus 451 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~----------------------------------~-- 485 (561)
++ ...+....+-...+++..|..+++.++.. .+. +
T Consensus 661 ~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~ 740 (895)
T KOG2076|consen 661 DSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP 740 (895)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc
Confidence 12 22333444556677888888777776655 221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
......|..+...+.+.-|+..|-++...+|++|..-..++..
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 1123345556667889999999999999999998776555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-22 Score=213.63 Aligned_cols=472 Identities=12% Similarity=-0.002 Sum_probs=370.5
Q ss_pred HHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhh
Q 008550 7 QITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (561)
Q Consensus 7 ~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (561)
.+..+.+.|++++|..+.......... ....++..+-..+...|+.+.|.+.+..+.+..
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~-------Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------------- 318 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVD-------PDLMTITSVISACELLGDERLGREMHGYVVKTG------------- 318 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------------
Confidence 356667778888888777776553211 112356666677888999999999999988763
Q ss_pred hcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHH
Q 008550 87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKE 166 (561)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 166 (561)
..++..++..+...|.+.|++++|..+|+.+.. .+...|..+...|.+.|++++|+..|++
T Consensus 319 -----------------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 319 -----------------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred -----------------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 123456788899999999999999999999863 4567899999999999999999999999
Q ss_pred HHhcC--CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 167 CLRHC--PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 167 ~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
+.+.. |+.. .+..+...+...++.+.+.+........... .+.. ..-.....|.+.|++++|.++|+++.+
T Consensus 380 M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~~~~---~~n~Li~~y~k~g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 380 MEQDNVSPDEI-TIASVLSACACLGDLDVGVKLHELAERKGLI--SYVV---VANALIEMYSKCKCIDKALEVFHNIPE- 452 (857)
T ss_pred HHHhCCCCCce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCC--cchH---HHHHHHHHHHHcCCHHHHHHHHHhCCC-
Confidence 87654 6544 3444445556666666555444333222111 1111 222336788899999999999998754
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCHHHHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-SRPEVFVAL 323 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 323 (561)
.+...|..+...|...|++++|+..|+++....+.+...+..+...+...|..+.+..++..+++... .+..+...+
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 35678899999999999999999999999876555666777777889999999999999998887543 334566778
Q ss_pred HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHH
Q 008550 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 400 (561)
...|.+ |+.++|...|+.. +.+..+|..+...|...|+.++|+..|++..+. .|+..++..+...+.+.|.++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 888999 9999999999886 567889999999999999999999999998875 577777888889999999999
Q ss_pred HHHHHHHHHHHHCC--CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 401 EALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 401 ~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+|..+|+.+.+..+ .+...+..+..++.+. |++++|.+.++++ ...|+ +.+|..+...+...|+.+.+....+++
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-GKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999985432 2567889999999998 9999999999886 34554 677888888888899999999999999
Q ss_pred HhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCccHHHHHHHHHHHHh
Q 008550 479 LKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI--------------------------NSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 479 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~l~~~ 531 (561)
+++.|++ ..+..++.+|...|++++|.+..+...+. .|...+++..|..+...
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 9999987 78889999999999999999999877543 34456677777777766
Q ss_pred cc
Q 008550 532 MK 533 (561)
Q Consensus 532 ~~ 533 (561)
++
T Consensus 764 ~~ 765 (857)
T PLN03077 764 MK 765 (857)
T ss_pred HH
Confidence 54
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-23 Score=211.79 Aligned_cols=445 Identities=11% Similarity=0.008 Sum_probs=358.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+......+.+.|++++|+..|+.+....|.. .+...+..+..++.+.+++
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-----------------------------~~~~t~~~ll~a~~~~~~~ 139 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFT-----------------------------LPASTYDALVEACIALKSI 139 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-----------------------------CCHHHHHHHHHHHHhCCCH
Confidence 56667778889999999999999987643211 2234667778888899999
Q ss_pred HHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 125 KAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 125 ~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
+.|..++..+... ..+...+..+...|.+.|++++|...|+++.. | +...|..+...+...++..+++..+.+..
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999988876432 34677888899999999999999999999864 3 44567777777778888887777766654
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (561)
.... ..+...+. .....+...|....+.+++..+.+.. ..+..++..+...|.+.|++++|...|+.. .+.
T Consensus 217 ~~g~--~p~~~t~~---~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~ 288 (697)
T PLN03081 217 EDGS--DAEPRTFV---VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEK 288 (697)
T ss_pred HhCC--CCChhhHH---HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCC
Confidence 3221 11222222 22455667899999999988887753 345778888999999999999999999876 345
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-CCChhHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGN 358 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 358 (561)
+...|..+...|.+.|++++|..+|+++.... ..+...+..+...+.. |++++|...+..+++.. +.+..++..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 77889999999999999999999999997643 2355678888888888 99999999999999876 556788999999
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKA 437 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A 437 (561)
.|.+.|++++|...|++..+ |+..+|..+...|.+.|+.++|++.|+++.... ..+...+..+...+... |..++|
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-g~~~~a 445 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS-GLSEQG 445 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-CcHHHH
Confidence 99999999999999998753 555779999999999999999999999988743 22566777778888887 999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 438 KKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 438 ~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
..+|+.+.+..+- +...+..+..++.+.|++++|.+.++++ ...|+..+|..+...+...|+.+.|...+++.+++.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 9999999864322 3457888999999999999999999874 345667889999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcc
Q 008550 516 SQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 516 p~~~~~~~~l~~l~~~~~ 533 (561)
|++...+..+..++...|
T Consensus 525 p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred CCCCcchHHHHHHHHhCC
Confidence 998888888877766554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-21 Score=199.39 Aligned_cols=461 Identities=11% Similarity=0.037 Sum_probs=344.2
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+.....+.+.|++..|..+.+.+.... ..++ ....+..+-..+.+.|..++|...|+.+.. |
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~g----vv~~--~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p--------- 435 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRG----LLDM--DKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P--------- 435 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCC----CCCc--hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C---------
Confidence 3455677788899999998877765431 1111 112233444567788999999998877643 2
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAV 161 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 161 (561)
+...+..+-.++.+.|+++.|..+++.+... ..+...+..+...|.+.|+.++|.
T Consensus 436 -----------------------d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 436 -----------------------TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred -----------------------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 1235666777788889999999998886543 456678888888899999999999
Q ss_pred HHHHHHHhcCC-CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008550 162 ACYKECLRHCP-FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240 (561)
Q Consensus 162 ~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 240 (561)
.+|+++.+... .+...+..+...+.+.++.+.+...+........ .++...| ......+.+.|++++|.++|.+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv--~PD~vTY---nsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV--KPDRVVF---NALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHH---HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999887653 3677788888888888888877766554432211 1122233 3337778899999999999999
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-C
Q 008550 241 LLQR----FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-P 314 (561)
Q Consensus 241 ~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 314 (561)
+... .| +..++..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|..+|.++.... .
T Consensus 568 M~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 568 MKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 9763 34 46788889999999999999999999999876 4567889999999999999999999999998762 2
Q ss_pred CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHH
Q 008550 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLV 390 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 390 (561)
.+...|..+...+.. |++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+.+... .|+...|..+.
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 245678888888888 99999999999999865 345778999999999999999999999998764 67778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCh
Q 008550 391 HSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-YLGAALALAELHVIEGRN 468 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~ 468 (561)
..|.+.|++++|+++|+++.... ..+...+..+...+... |++++|..++.++.+.... +...+..+..++. +++
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y 803 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRF 803 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHH
Confidence 99999999999999999987642 23567777777888887 9999999999999886422 2344444433322 356
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CccHHH
Q 008550 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN--SQNEAA 521 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 521 (561)
++|....+..+..++ +......+..+.|..+|++.++.. |+....
T Consensus 804 ~ka~~l~~~v~~f~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 804 EKACALGEPVVSFDS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHhhhhhhhhhhhc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 666666555443322 222223344577999999998864 654443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=184.75 Aligned_cols=425 Identities=19% Similarity=0.163 Sum_probs=257.4
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
...++....+..|+|++|+.+....+.+.+.+.. .+-....+|...|+|.+|++--.+.++++|+.|+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv--------lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k---- 71 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV--------LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK---- 71 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccc--------hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh----
Confidence 4567888999999999999998888887544333 5666778899999999999999999999987774
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcC------
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSR------ 155 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~------ 155 (561)
.+..+|..+.-+|+|++|+..+.+ +...|.+......++.++....
T Consensus 72 ---------------------------gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~ 124 (539)
T KOG0548|consen 72 ---------------------------GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF 124 (539)
T ss_pred ---------------------------HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc
Confidence 688999999999999999999988 7777888888888877773220
Q ss_pred ---------------C---hhhHHHHHHHHHhcCCCcHHHH-------HHHHHH-cCCcccHhHHhhccccccCCCCC--
Q 008550 156 ---------------H---NRGAVACYKECLRHCPFFIEAI-------TALAEL-GATPKDIISLFAQTPNRSGRAPF-- 207 (561)
Q Consensus 156 ---------------~---~~~A~~~~~~~l~~~p~~~~~~-------~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 207 (561)
+ .+.+.....+.+...|.+...+ ..++.+ ..... ...............|.
T Consensus 125 ~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~-~~~~~~~~~~~~~~~p~~~ 203 (539)
T KOG0548|consen 125 TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL-LFYASGIEILASMAEPCKQ 203 (539)
T ss_pred cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc-cccccccccCCCCCCcccc
Confidence 0 1122222222233333222111 111111 00000 00000000000000000
Q ss_pred ----CCC--Chh-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 208 ----DHL--DSS-------RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 208 ----~~~--~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
.+. +.. .....-..|...+...++..|++.+..++..+ .+...+...+-+|+..|.+.+++....+
T Consensus 204 ~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 204 EHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred cCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 000 000 00112233666666677777777777777777 6666666677777777777777766666
Q ss_pred HHhhCCCCh-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 275 VRSIDPYIM-------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 275 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
+++...... .+...+|..+...++++.++.+|++++..... ..+... ...++++...+...-++
T Consensus 283 a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~ 354 (539)
T KOG0548|consen 283 AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYIN 354 (539)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 665543321 12233444555566666666666665543322 233333 45555565555555556
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (561)
|.-.......|..++..|+|..|+..|.+++..+|++ ..|.+.+.||.++|.+..|+...+.+++++|+....|...|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 6655555556666677777777777777776666666 346666777777777777777777777777766666666666
Q ss_pred HHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++..+ .+|+.|.+.|.++++.+|++.++...+..|...+.......+..++
T Consensus 435 al~~m-k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 435 ALRAM-KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 66666 6677777777777777766666666666666554333333344444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=192.71 Aligned_cols=295 Identities=14% Similarity=0.069 Sum_probs=252.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 297 (561)
...|......|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 45589999999999999999999999998888888889999999999999999999999999885 46666799999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH----HHHHHHHhcCChhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----MKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~ 372 (561)
+++.|...++++.+..|+++.++..++.++.. |++++|.+.+.+..+..+.++..+. ....-....+..+++...
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999 9999999999999987655443331 222222344455555667
Q ss_pred HHHhHHhCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHhhhcCChHHHHHHHHHHH
Q 008550 373 FRGAQELRPD-----LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL--KLVGDVHASNASGREKAKKFYESAL 445 (561)
Q Consensus 373 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (561)
+..+....|. ...+..++..+...|++++|.+.++++++..|++.... .......... ++.+.+++.+++++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~~l 326 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-CChHHHHHHHHHHH
Confidence 8888877773 36688999999999999999999999999999987532 2233333444 78899999999999
Q ss_pred HhCCCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 446 RLEPGYL--GAALALAELHVIEGRNGDAVSLLE--RYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 446 ~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+..|+++ .....+|+++.+.|++++|.++|+ .+++..|++..+..+|.++...|+.++|.++|++++..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 889999999999999999999999 67888899977889999999999999999999998664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=170.19 Aligned_cols=373 Identities=13% Similarity=0.118 Sum_probs=249.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccc---cccCCChHHHHHHHHHHHHhcC
Q 008550 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 46 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
...++..+-+-++-.++...|...+...|--.....++....+ ...+.+.... ......+.-.....+...+..+
T Consensus 133 nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v--~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~ 210 (564)
T KOG1174|consen 133 NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV--NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNF 210 (564)
T ss_pred HHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh--cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhc
Confidence 3445555555556667888888887776532222222221111 1111111111 2222233223333444444445
Q ss_pred CHHHHHHH--Hhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccc
Q 008550 123 ETKAAIVE--MEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (561)
Q Consensus 123 ~~~~A~~~--l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (561)
+...|... +-. ...-|.+...+..+|.++...|++.+|+..|+++...+|......-..+-+....++....-...-
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 55555443 333 333488899999999999999999999999999999999988887776666555555443322222
Q ss_pred cccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
....... .....|+ ..+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.
T Consensus 291 ~Lf~~~~---~ta~~wf---V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 291 YLFAKVK---YTASHWF---VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHhhhh---cchhhhh---hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 2111110 1122333 337777777888888888888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH-HHHHh--cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWER--KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
|...+.+..+..+|...|++.+|....+.+++..|.+...+..+| .++.. .--++|.+++++++++.|....+...+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 888888888888888888888888888888888888887777776 44333 455678888888888888887788888
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
+.++...|.++.++..+++.+...|+...+..+|.++...+.+.+|+..|..++.++|++..+...+-.+
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 8888888888888888888887777777777788888888888888888888888888766655544433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=196.70 Aligned_cols=258 Identities=24% Similarity=0.229 Sum_probs=93.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh-h-CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRS-I-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (561)
.+|.++...|++++|++++.+.+. . .|+++..|..+|.+....++++.|+..+++++..++.++..+..++.++..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 557777777777777777754433 3 36666667777777777777777777777777776666666666666632377
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--CCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.+ ..|..+|.++.+.|++++|+..+++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776665543 35555566666777777777777777765443 222 3466777777777777777777777
Q ss_pred HHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HH
Q 008550 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SL 487 (561)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 487 (561)
+++.+|+++.+...++.++... |+.+++...+.......|+++..+..+|.++...|++++|+.+++++++..|++ .+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 7777777777777777777776 777777777777666667777777777777777777777777777777777755 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+..+|.++...|+.++|..++++++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 77777777777777777777777654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=197.05 Aligned_cols=257 Identities=23% Similarity=0.245 Sum_probs=121.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 222 AQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 89999999999999999776554 488999999999999999999999999999999999999888888888 799999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc--CCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID--ERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++|..++++..+..+ ++..+.....++.. ++++++...++++.... +.++..+..+|.++.+.|++++|+..|+++
T Consensus 94 ~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 94 EEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987664 56777777777888 99999999999977655 677889999999999999999999999999
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
++.+|++ .+...++.++...|+++++...+.......|+++..+..+|.++... |++++|+.+|+++++.+|+++..+
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-cccccccccccccccccccccccc
Confidence 9999997 56889999999999999999999999988899999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
..+|.++...|+.++|..++.+++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-20 Score=179.86 Aligned_cols=293 Identities=12% Similarity=0.062 Sum_probs=243.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHhhCCCChHHH-HHHHHHHHh
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-AKVDAIIGKNDEAILNFEKVRSIDPYIMTYM-DEYAMLLKV 295 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 295 (561)
.+..|......|+++.|.+.+.+..+..+ ++.+++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 35668888899999999988887655433 35555555 6666999999999999999999999985443 455899999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH--------HHHHHHHhcCCh
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI--------MKGNLLLSMKRP 366 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~ 366 (561)
.|++++|...++++.+..|+++.++..++.++.. |++++|+..+.+..+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999 9999999999999987766543222 222222233344
Q ss_pred hHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (561)
+.....++......|++ .....++..+...|+.++|...++++++. |.++......+.+ .. ++.+++++..++.+
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~-~~~~~al~~~e~~l 321 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KT-NNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cC-CChHHHHHHHHHHH
Confidence 45555555555555555 56889999999999999999999999994 5566666666655 33 88999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
+..|+++..+..+|.++...|++++|.+.|+++++..|++..+..++.++...|+.++|..+|++++.+.
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888999999999999999999999998764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-18 Score=154.57 Aligned_cols=447 Identities=14% Similarity=0.075 Sum_probs=358.0
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 123 (561)
..|+..|.--..++++..|.+.|++|+..+.. ...+++..+.+-++.+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r-------------------------------~itLWlkYae~Emknk~ 122 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYR-------------------------------NITLWLKYAEFEMKNKQ 122 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHhhhh
Confidence 36788888889999999999999999998632 23589999999999999
Q ss_pred HHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 124 TKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 124 ~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
...|..++++ +..-|+....|+-...+-...|+..-|..+|++-+...|+ ..+|......-...++.+.+........
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998 4555888889998888888999999999999999999995 4566666666556555555444333332
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
- .+++..+|+.+ |..-...|+..-|..+|.++++...++. ..+...|..-..+..++.|..+|+-++..-
T Consensus 202 ~----~HP~v~~wiky---arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 202 L----VHPKVSNWIKY---ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred e----ecccHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23456677776 8888899999999999999998765542 344556666677888999999999999999
Q ss_pred CCC--hHHHHHHHHHHHhcCCHh---HHH-----HHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC
Q 008550 280 PYI--MTYMDEYAMLLKVKCDYS---KLS-----KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 280 ~~~--~~~~~~l~~~~~~~~~~~---~A~-----~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
|.+ .+.+..+...--+-|+.. +++ -.|+..++.+|.+.++|+..-.+... |+.+.-.+.|++++...|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 988 344444444444556543 333 24778889999999999999999888 9999999999999987775
Q ss_pred Chh---------HHHHHHH-HHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Q 008550 349 HIP---------GYIMKGN-LLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (561)
Q Consensus 349 ~~~---------~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (561)
... .|.+.+. .-+...+.+.+.+.|+.++++-|.. ..|...+....++.+...|.+.+..++...
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c 434 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC 434 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC
Confidence 331 1222221 1245789999999999999998874 358888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHH
Q 008550 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVK 490 (561)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 490 (561)
|.+ ..+.....+-.+. ++++....+|++-++..|.+..+|...|.+-..+|+.+.|..+|+-++....-+ -+|-.
T Consensus 435 PK~-KlFk~YIelElqL-~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 435 PKD-KLFKGYIELELQL-REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred Cch-hHHHHHHHHHHHH-hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 964 4444455555666 999999999999999999999999999999999999999999999999876433 57777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
....-...|.+++|...|++.++..+..+ +|...+......
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~ 553 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASA 553 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccc
Confidence 78888899999999999999999987665 999888887643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-21 Score=182.05 Aligned_cols=296 Identities=10% Similarity=-0.006 Sum_probs=237.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (561)
....|.+....|+++.|.+.+.++.+..|+....+.. .|.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~ll----------------------------------------aA~ 126 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIK----------------------------------------AAE 126 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHH----------------------------------------HHH
Confidence 3566777888889999998888888877764433332 277
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 224 CCIASNDYKGGLELFAELLQRFPNNI-HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
++...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++...+..|+++.++..++.++...|++++|
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 88888999999999999888888774 56666788888999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH----HHHHHHh-cCHhHHHHHHHHHHhccC----CChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 303 SKLVHDLLSIDPSRPEVFVA----LSVLWER-KDERGALSYAEKSIRIDE----RHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~-~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.+.+.+..+....++..... ...-... +..+++...+.++....| +++..+..++..+...|++++|...+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99988888775555443321 1111122 444555667777777777 58899999999999999999999999
Q ss_pred HHhHHhCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHhhhcCChHHHHHHHH--HHHH
Q 008550 374 RGAQELRPDLRS---YQGLVHSYLQFSKVKEALYAAREAMKAMPQSA--KALKLVGDVHASNASGREKAKKFYE--SALR 446 (561)
Q Consensus 374 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~--~a~~ 446 (561)
+++++..|++.. ...........++.+.+++.++++++..|+++ ..+..+|.++... |++++|.++|+ .+++
T Consensus 287 ~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 287 FDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-GEFIEAADAFKNVAACK 365 (409)
T ss_pred HHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhh
Confidence 999999998752 12333344556888999999999999999999 8899999999998 99999999999 5777
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 447 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
..|+... +..+|.++.+.|+.++|.+++++++..
T Consensus 366 ~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 366 EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887654 669999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-20 Score=174.23 Aligned_cols=390 Identities=14% Similarity=0.090 Sum_probs=317.9
Q ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCcHHHHHHHH
Q 008550 106 NENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PFFIEAITALA 182 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~ 182 (561)
++..++-.+.......|++..+.+.|++. +..-...+.|+.++..+...|....|+...+..+... |.++......+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 35677888888888999999999999984 4445667889999999999999999999999998888 65555544332
Q ss_pred HHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHH
Q 008550 183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-----PNNIHILLEMAK 257 (561)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~ 257 (561)
..|.-+.+.+++++.+..+++... --.+..+..+|.
T Consensus 401 ---------------------------------------klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi 441 (799)
T KOG4162|consen 401 ---------------------------------------KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGI 441 (799)
T ss_pred ---------------------------------------HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 344555688889999999888732 123567777787
Q ss_pred HHHHhC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 008550 258 VDAIIG-----------KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSRPEVFVALSV 325 (561)
Q Consensus 258 ~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 325 (561)
+|..+- ...++++.++++++.+|.|+.+.+.++.-|..+++.+.|....+++++. ..+++..|..++.
T Consensus 442 ~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 442 AYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 776432 2568999999999999999999999999999999999999999999999 5566899999999
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-H---------HHHHHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R---------SYQGLVHSYL 394 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~---------~~~~l~~~~~ 394 (561)
++.. +++.+|+...+.++...|+|.........+-...++.++|+..+...+..-... . .....+....
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 9999 999999999999999999988888888888888999999999888877664311 1 1112222333
Q ss_pred hcCCHHHHHHHHHHHHHHC-------------C------CC-------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 395 QFSKVKEALYAAREAMKAM-------------P------QS-------AKALKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~-------------p------~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
..++..+|++..+++...- | .. ...|...+..+... +..++|..++.++-.++
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~-~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLS-GNDDEARSCLLEASKID 680 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHhcc
Confidence 3445555665555543210 1 11 34566778888877 89999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCccHHHHHHH
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALS--HYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l 525 (561)
|..+..++..|.++...|+..+|.+.|..++..+|++ .....+|.++...|+..-|.. .+..+++++|.++++|+.+
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999998 899999999999999988888 9999999999999999999
Q ss_pred HHHHHhccCC
Q 008550 526 ERLEKQMKGV 535 (561)
Q Consensus 526 ~~l~~~~~~~ 535 (561)
+.+.+..|..
T Consensus 761 G~v~k~~Gd~ 770 (799)
T KOG4162|consen 761 GEVFKKLGDS 770 (799)
T ss_pred HHHHHHccch
Confidence 9999998743
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-19 Score=158.37 Aligned_cols=460 Identities=14% Similarity=0.119 Sum_probs=354.4
Q ss_pred HhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccC
Q 008550 12 IDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTS 91 (561)
Q Consensus 12 ~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 91 (561)
..++.+..|-.+.+..+.... .....|+..+..-++.++..-|..++.+|+.+-|.
T Consensus 84 esq~e~~RARSv~ERALdvd~--------r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR---------------- 139 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY--------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR---------------- 139 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----------------
Confidence 345566666666666666532 22338899999999999999999999999998652
Q ss_pred CCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 008550 92 NRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (561)
Q Consensus 92 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 171 (561)
-...++....+--.+|+...|.++|++...-..+..+|......-.+.+..+.|...|++.+-.+
T Consensus 140 ---------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H 204 (677)
T KOG1915|consen 140 ---------------VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH 204 (677)
T ss_pred ---------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec
Confidence 24578888888888999999999999955444566888888888889999999999999999888
Q ss_pred CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--H
Q 008550 172 PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--I 249 (561)
Q Consensus 172 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~ 249 (561)
|+ ...|+..+..-...|....+.............+......+. . -|..-..++.++.|..+|+-++..-|.+ -
T Consensus 205 P~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv-a--FA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 205 PK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV-A--FAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 84 555666666655555443332222222111111111111111 1 1555667788999999999999999987 3
Q ss_pred HHHHHHHHHHHHhCCH---HHHH-----HHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH---
Q 008550 250 HILLEMAKVDAIIGKN---DEAI-----LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE--- 318 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~---~~A~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 318 (561)
..+......--+-|+. ++++ -.|++.+..+|.+.++|+.+..+....|+.+.-.+.|++++...|...+
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 3333333333344553 3333 3478889999999999999999999999999999999999998776532
Q ss_pred ------HHHHHHHHHHh--cCHhHHHHHHHHHHhccCCC----hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHH
Q 008550 319 ------VFVALSVLWER--KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386 (561)
Q Consensus 319 ------~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (561)
.|.+.+..-.. .+.+.+.++|+.++++-|.. +..|...|....+..+...|.+.+-.++-..|.+..+
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF 440 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH
Confidence 23333332222 89999999999999998875 4678888889999999999999999999999999888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LG-AALALAELHVI 464 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~-~~~~la~~~~~ 464 (561)
.....+-.++++++....+|++.++..|.+..+|...|..-... |+.+.|..+|+-|+....-+ |+ .|-.....-..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L-gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL-GDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 88888899999999999999999999999999999999999998 99999999999998765433 33 44556777788
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhcC
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFA-----ATN-----------MLQEALSHYEAALRIN 515 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~ 515 (561)
.|.++.|..+|++.++..+...+|...|..-. ..| ....|...|++|....
T Consensus 520 ~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred cchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888887766 445 6778999999998763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=169.96 Aligned_cols=272 Identities=14% Similarity=0.138 Sum_probs=208.6
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 008550 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (561)
Q Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 130 (561)
-+++...+...|-......++.+..-|....+ ...+.-....+|.||+++|.+.+|.+.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~---------------------~~~dwwWk~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTG---------------------CTLDWWWKQQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcccccccc---------------------chHhHHHHHHHHHHHHHhcChhhhHHH
Confidence 35666777777777666666554222211111 112233556788888888888888888
Q ss_pred HhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCC
Q 008550 131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
|+........++.+.+++++|.+..++..|+..|.+.+...|.+.......
T Consensus 246 lqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~----------------------------- 296 (478)
T KOG1129|consen 246 LQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ----------------------------- 296 (478)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-----------------------------
Confidence 888655556678888888888888888888888888888888877666555
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
|.++...+++++|.++|+.+++.+|.+.++.-.+|.-|+..++++-|+.+|++++++.-.+++.+.++|
T Consensus 297 -----------ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig 365 (478)
T KOG1129|consen 297 -----------ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG 365 (478)
T ss_pred -----------HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence 667777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPS---RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (561)
.|+...++++-++..|++++....+ ..++|+++|.+... ||+.-|..+|+-++..+|++.+++.++|.+-.+.|+.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 8888888888888888888765432 25678888887777 8888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhHHhCCCh
Q 008550 367 EAAVIAFRGAQELRPDL 383 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~ 383 (561)
++|..++..+-...|+-
T Consensus 446 ~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHHhhhhCccc
Confidence 88888888777777764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-21 Score=188.58 Aligned_cols=268 Identities=12% Similarity=-0.011 Sum_probs=221.2
Q ss_pred CCCCHH--HHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc---------CCHhHHHHHHHHHH
Q 008550 245 FPNNIH--ILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK---------CDYSKLSKLVHDLL 310 (561)
Q Consensus 245 ~~~~~~--~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~ 310 (561)
.|.+.+ .++..|..+... +.+++|+..|+++++.+|+++.++..+|.++... +++++|...+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444444 344455544433 3467999999999999999999999998877643 34789999999999
Q ss_pred hcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH-HHHH
Q 008550 311 SIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR-SYQG 388 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 388 (561)
+.+|+++.++..+|.++.. |++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+. .+..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999988 9999999999999999999999999999999999999999999999999999974 4455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
++.++...|++++|+..+++++... |+++..+..+|.++... |++++|...+.++....|....++..++..+...|+
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~-G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK-GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 6667788899999999999998875 78888999999999988 999999999999988888888888889999888884
Q ss_pred hHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 468 NGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
.|...++++++..... ........++.-.|+.+.+..+ +++.+.++
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7777777766644322 2233378888888998888877 77766544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-19 Score=163.48 Aligned_cols=431 Identities=16% Similarity=0.143 Sum_probs=307.8
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+.+...++..+.-.|..++|.+.++..+.++...|..+ +..-..|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHg-------------------------------eslAmkGL~L~ 52 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHG-------------------------------ESLAMKGLTLN 52 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccc-------------------------------hhHHhccchhh
Confidence 34556889999999999999999999999999876554 45677888999
Q ss_pred hcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
.+|+-++|...... +..++.+...|..+|.++...++|++|+.+|+.+++.+|+|...+..++.+...++++......-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999998887 67778999999999999999999999999999999999999999999988888777777666555
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHhCCHHHHHH
Q 008550 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF---PNN-----IHILLEMAKVDAIIGKNDEAIL 270 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~ 270 (561)
.......+ .....|+.+ |..+...|++..|..+++...+.. |+. .........+....|.+++|++
T Consensus 133 ~~LLql~~---~~ra~w~~~---Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 133 NQLLQLRP---SQRASWIGF---AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHhhh---hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44443332 234555555 778888888888888888777654 322 2445556667777888888887
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH-HHHHHHHhccCC
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL-SYAEKSIRIDER 348 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~-~~~~~~~~~~~~ 348 (561)
.+..--..--+........+.++...+++++|...+..++..+|++...+..+-.++.. .+--+++ ..|...-+..|.
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 77665444344445566778888888999999999988888888888877777776653 4444555 445544444443
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHH-HHhHHh-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HH-------
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAF-RGAQEL-RPDLRSYQGLVHSYLQFSKVKEALYAAREAM-------KA------- 412 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~------- 412 (561)
...-..++.....-.++......| ...++. -|. .+..+-..|-.-. +. .++++.+ .-
T Consensus 287 -~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--vf~dl~SLyk~p~---k~-~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 287 -HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--VFKDLRSLYKDPE---KV-AFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc--hhhhhHHHHhchh---Hh-HHHHHHHHHHHhhcccccCCCcc
Confidence 333333443333334444444333 222222 121 1112222221111 11 1222222 11
Q ss_pred -----CCCCH--HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 413 -----MPQSA--KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 413 -----~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.|..+ ..++.++.-+... |+++.|..++..++...|+.++.+..-|+++...|+.++|..+++.+.+.+..+
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~-g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKL-GDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 12222 3345677777777 999999999999999999999999999999999999999999999999998777
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 486 S-LHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 486 ~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
. +....|....+.++.++|.+...+.-+..
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 4 44488999999999999998887765443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-20 Score=179.16 Aligned_cols=406 Identities=15% Similarity=0.103 Sum_probs=281.0
Q ss_pred cCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccc
Q 008550 121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (561)
Q Consensus 121 ~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (561)
.++...|...|-+ +...+.-..++..+|.+|+..-+...|..+|.+++.++|.+.+++...+..+....+++.++....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3446777776554 677788889999999999999999999999999999999999999999999999999999888865
Q ss_pred cccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
...+..+. .....+|.. +|..+...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++
T Consensus 551 ~~~qka~a-~~~k~nW~~---rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPA-FACKENWVQ---RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchH-HHHHhhhhh---ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 55444332 223344444 58899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHh-cCHhHHHHHHHHHHhc------
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP-------EVFVALSVLWER-KDERGALSYAEKSIRI------ 345 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~------ 345 (561)
|.+.-+.+..+.+....|+|.+|+..+...+....... +.+...+..+.. |=..+|..++++.++.
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876554332 333333333322 4344455544444332
Q ss_pred -c----------------------CC-----------------------------------------ChhHHHHHHHHHH
Q 008550 346 -D----------------------ER-----------------------------------------HIPGYIMKGNLLL 361 (561)
Q Consensus 346 -~----------------------~~-----------------------------------------~~~~~~~l~~~~~ 361 (561)
. |+ ++..|+++|.-|+
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 1 11 0122455555444
Q ss_pred h--------cCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 362 S--------MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 362 ~--------~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
+ +.+...|+.++.+++++..++ ..|..+|.+ ...|++.-|..+|-+.....|.+...|.++|.++... .
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n-~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN-Q 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec-c
Confidence 3 122235666666666665555 335555555 4456666666666666666666666666666666665 6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hHHHHHHHHHHHHcCCHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD------DSLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 506 (561)
+++.|...|.++..++|.+...|...+.+....|+.-++...+....+.... -..|..-.......|++++-+.
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 6666666666666666666666666666666666666666666654333221 1344444445555555554433
Q ss_pred H----------HHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 507 H----------YEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 507 ~----------~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
. .++.+.-.|+...++...+.+.+.+
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL 980 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHL 980 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHH
Confidence 3 2333444666666666655555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-20 Score=174.03 Aligned_cols=257 Identities=11% Similarity=0.049 Sum_probs=197.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
+......|+++.|..++.++.+.+|++.. .....+.++...|++++|+..+++..+.+|+++.++..++.++...|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 55557777788888888777777777643 33344777777788888888888888888888877777788888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHH--------HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 301 KLSKLVHDLLSIDPSRPEVFV--------ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
+|+..+.++.+..+.++.... .+...... .+.+...+.++..-...|+++.+...++..+...|+.++|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888777777776655543222 11111112 334445555555555667789999999999999999999999
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
.++++++..|+.......+. ...++++++++.+++.++.+|+++..+..+|.++... +++++|.++|+++++..|++
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCH
Confidence 99999996665544333333 3559999999999999999999999999999999998 99999999999999999986
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
..+..++.++.+.|+.++|..+|++++...
T Consensus 362 -~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 -YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456689999999999999999999998754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=186.50 Aligned_cols=260 Identities=14% Similarity=0.038 Sum_probs=222.6
Q ss_pred HHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhhCCCChHH
Q 008550 218 RYVEAQCCIAS---NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---------KNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 218 ~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
.++.|...... +.+++|+..|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45556554433 45789999999999999999999999999887543 4899999999999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
+..+|.++...|++++|+..++++++.+|+++.+++.+|.++.. |++++|+..++++++++|.++..+..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999888777777888899
Q ss_pred ChhHHHHHHHHhHHhC-CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELR-PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE 442 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (561)
++++|+..+++++... |+. ..+..+|.++...|++++|...+.++....|.....+..++..+... | +.|...++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~a~~~l~ 497 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN-S--ERALPTIR 497 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc-H--HHHHHHHH
Confidence 9999999999999875 555 45888999999999999999999999999999899999999998877 6 47777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 443 SALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 443 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
+.++.....+.-......++.-.|+.+.+..+ +++.+.
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 76664332222233377888888888888777 666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=166.87 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=220.4
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
....|+-.-..|.||++.|.+.+|...++..++..|. ++.+..++.+|.+..++..|+..+...++..|.+...+...+
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A 297 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA 297 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH
Confidence 4455666666799999999999999999999988875 888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
+++..+++.++|.++|+.+++.+|.+.++.-.++.-|.- ++++-|+.+|.+.+++...+++.+.++|.|++..++++-+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999999999999988888887777 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhCC--Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHH
Q 008550 370 VIAFRGAQELRP--DL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (561)
Q Consensus 370 ~~~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (561)
+..|++++.... +. .+|+++|.+....|++.-|..+|+-++..+|++..++.++|.+-.+. |+.++|..++..+-
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~-G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS-GDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc-CchHHHHHHHHHhh
Confidence 999999988743 33 56999999999999999999999999999999999999999888887 99999999999998
Q ss_pred HhCCCCHHHHHHHHHH
Q 008550 446 RLEPGYLGAALALAEL 461 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~ 461 (561)
...|.-.+..++++.+
T Consensus 457 s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 457 SVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhCccccccccceeEE
Confidence 8888877766665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=181.82 Aligned_cols=372 Identities=11% Similarity=-0.030 Sum_probs=209.6
Q ss_pred cCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHH
Q 008550 154 SRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKG 233 (561)
Q Consensus 154 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (561)
.++...|...|-++++++|....++..|+..+....+...+..-........+. +...+... +..+.+..+++.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~---adtyae~~~we~ 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAAS---ADTYAEESTWEE 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHH---HHHhhccccHHH
Confidence 455888999999999999999888888855554433333333222222221111 11111111 444444444444
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 234 GLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 234 A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
|..+.-..-+..|.. ...|..+|-.|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 444433333333321 123333444444455555555555555555555555555555555555555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhC---
Q 008550 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELR--- 380 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 380 (561)
++|.+.-..+..+.+... |.|.+|+..+...+....... ..+...+..+...|-...|...++++++..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 555444444444444444 555555555444443322211 222222222333333333444444333321
Q ss_pred -----CCh-HHHHHHHHHHHh-----------------------cCCH---H---HHHHHHHHHHHHCCCCHHHHHHHHH
Q 008550 381 -----PDL-RSYQGLVHSYLQ-----------------------FSKV---K---EALYAAREAMKAMPQSAKALKLVGD 425 (561)
Q Consensus 381 -----~~~-~~~~~l~~~~~~-----------------------~~~~---~---~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (561)
-++ -.|..++..+.- .+.. + -+.+++-..++.. .++..|+++|.
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGi 783 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGI 783 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhH
Confidence 001 012111111100 0000 0 0111111111111 11567888887
Q ss_pred HHhhh-------cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHH
Q 008550 426 VHASN-------ASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAA 497 (561)
Q Consensus 426 ~~~~~-------~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~ 497 (561)
-+... ..+...|+.++.+++++..++...|..||.+ ...|++.-|...|-+.+...|.. ..|.++|.++..
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 77651 1233589999999999999999999999988 66699999999999999999987 899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 498 TNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 498 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+++-|...|.++..++|.|...|...+.+-+.+|
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 999999999999999999999999999988877665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-17 Score=153.01 Aligned_cols=447 Identities=15% Similarity=0.107 Sum_probs=276.3
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++..++....++.|++|...+..++.+.+.... ++...--++.+.++|++|+... +.++...
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~--------a~~cKvValIq~~ky~~ALk~i----kk~~~~~----- 76 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED--------AIRCKVVALIQLDKYEDALKLI----KKNGALL----- 76 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh--------hHhhhHhhhhhhhHHHHHHHHH----Hhcchhh-----
Confidence 4678889999999999999999999998543333 6777777889999999998443 3332110
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
......+..|.|.++++..++|+..++.+. +.+.....+.|++++++|+|++|..
T Consensus 77 -----------------------~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~--~~~~~ll~L~AQvlYrl~~ydeald 131 (652)
T KOG2376|consen 77 -----------------------VINSFFFEKAYCEYRLNKLDEALKTLKGLD--RLDDKLLELRAQVLYRLERYDEALD 131 (652)
T ss_pred -----------------------hcchhhHHHHHHHHHcccHHHHHHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHH
Confidence 001123789999999999999999999443 4445688899999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
+|+.+++.+.+..+.-....-+.....-.....+ ..+.. ....+...|..|.++...|+|.+|++.+++++
T Consensus 132 iY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q-------~v~~v--~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 132 IYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ-------SVPEV--PEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH-------hccCC--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999998887666554433111000000000000 00100 12234445555666666666666666666654
Q ss_pred HhCC-----C--C--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 008550 243 QRFP-----N--N--------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (561)
Q Consensus 243 ~~~~-----~--~--------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (561)
+... + + ..+...++.++..+|+..+|...|...++.+|.+........+-+.
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv------------- 269 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV------------- 269 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh-------------
Confidence 3210 0 0 1233344444444444444444444444444444322211111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCHh--HHHHHHHHHHhcc----------CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 308 DLLSIDPSRPEVFVALSVLWERKDER--GALSYAEKSIRID----------ERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~A~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
.+-...++. .++..++...... .....++.+.+.+.+..+..+.+.+....
T Consensus 270 -----------------a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 270 -----------------ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred -----------------hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 000001111 1111111111100 01123456667777777777777766666
Q ss_pred hHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHhhhcCChHHHHHHHHHHH--------
Q 008550 376 AQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESAL-------- 445 (561)
Q Consensus 376 ~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~-------- 445 (561)
.-...|.... .........+...+.+|...+....+.+|.+ ..+...++.+.... |+++.|++.+....
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~-gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ-GNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhhhhhhh
Confidence 5555565522 1222222233337888999999999999987 66778888888888 99999999998333
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+.. ..|.+...+..++.+.++.+.|...+.+++...... ..+...+.+-.+.|+-++|...+++.++.+|+
T Consensus 412 ~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 412 EAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred hhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 222 345566667777888888888888888887654211 56677788888889999999999999999999
Q ss_pred cHHHHHHHHHHHHhc
Q 008550 518 NEAAKKGLERLEKQM 532 (561)
Q Consensus 518 ~~~~~~~l~~l~~~~ 532 (561)
+.++...+.-.+..+
T Consensus 491 d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL 505 (652)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999888777665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-20 Score=165.67 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=159.5
Q ss_pred cCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHH
Q 008550 229 NDYKGGLELFAELLQRFP----NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK 304 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 304 (561)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566778888888886433 2366788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh
Q 008550 305 LVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (561)
.|+++++++|++..++..+|.++.. |++++|+..++++++.+|+++.... ...+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 8888888888888888888888877 8888888888888888888763211 1223345667888888886655443221
Q ss_pred HHHHHHHHHHHhcCCHHHH--HHHHH----HHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC-CCHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEA--LYAAR----EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP-GYLGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A--~~~~~----~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~ 456 (561)
.|. .+.+....|+..++ +..+. ...+..|..+.+|+.+|.++... |++++|+.+|+++++.+| +.++..+
T Consensus 199 -~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~-g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 199 -QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSL-GDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred -ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 111 23444445544332 22222 22244555666777777777776 777777777777777775 5555555
Q ss_pred HHHHHHHH
Q 008550 457 ALAELHVI 464 (561)
Q Consensus 457 ~la~~~~~ 464 (561)
.+..+...
T Consensus 276 ~~~e~~~~ 283 (296)
T PRK11189 276 ALLELALL 283 (296)
T ss_pred HHHHHHHH
Confidence 55444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=171.97 Aligned_cols=225 Identities=14% Similarity=0.077 Sum_probs=98.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.-.+
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCHHHHHH-------HHHHHHh-cCHhHHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVA-------LSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
|..++.+.+...|........ ...-... ..+..-.+.|..+....| .++++...||.+|...|+|++|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 444444444333221110000 0000000 112223333334444444 344455555555555555555555
Q ss_pred HHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 372 AFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
+|+.++...|++. .|..+|-.+....+..+|+..|++++++.|....+++++|..+... |.|.+|+++|-.++.+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-G~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-GAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-hhHHHHHHHHHHHHHh
Confidence 5555555555542 2555555555555555555555555555555555555555555554 5555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=164.76 Aligned_cols=229 Identities=15% Similarity=0.070 Sum_probs=135.8
Q ss_pred CHhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDP----SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 372 (561)
..+.++..+.+++...| ..+..|+.+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33444444444543222 124456666666666 6666666666666666666666666666666666666666666
Q ss_pred HHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
|+++++++|++ .++.++|.++...|++++|++.+++++..+|+++...... .+.... +++++|+..+.++....+..
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~-~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESK-LDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHcc-CCHHHHHHHHHHHHhhCCcc
Confidence 66666666665 4466666666666666666666666666666665321111 122233 66677777776655432221
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ccHHHH
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYL-------KDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS-QNEAAK 522 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 522 (561)
.+. .+.+....|+...+ ..++.+. +..|.. ++|+.+|.++...|++++|+.+|+++++.+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 34444455555433 2222222 222333 6788888888888888888888888888885 777777
Q ss_pred HHHHHHHHhc
Q 008550 523 KGLERLEKQM 532 (561)
Q Consensus 523 ~~l~~l~~~~ 532 (561)
..+..+....
T Consensus 275 ~~~~e~~~~~ 284 (296)
T PRK11189 275 YALLELALLG 284 (296)
T ss_pred HHHHHHHHHH
Confidence 7676666553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-18 Score=158.78 Aligned_cols=467 Identities=13% Similarity=0.057 Sum_probs=337.6
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.+|..+-..++.++|.....+++.+++. .+...+++-.+|..+...|+-++|...-+.++..++..+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----- 75 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----- 75 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc-----
Confidence 3677888999999999999999999985 234455889999999999999999999999999875433
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAV 161 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 161 (561)
..|-.+|..+...++|++|++.+.. +...|++...+.-++.+..+.|+++-..
T Consensus 76 --------------------------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 76 --------------------------VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred --------------------------hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 4788899999999999999999998 5666999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC--CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008550 162 ACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP--FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (561)
Q Consensus 162 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (561)
..-.+.++..|.....|..++..+...++...+...+........ ++..+-......+.+.......|.+++|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999998888888888777776665544432 333334444456667888889999999998887
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH-HHHHHHHhcCCCCHH
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS-KLVHDLLSIDPSRPE 318 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 318 (561)
.--...-+........|.++..++++++|...|...+..+|++...+..+-.++..-.+-.++. ..|...-+..|.. .
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e 288 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-E 288 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-c
Confidence 7655555556677788999999999999999999999999999999888888886333333444 5666555554443 3
Q ss_pred HHHHHHHHHHh-cCHhHHHH-HHHHHHhccCCChhHHHHHHHHHHhcCC---hhHHHHHHHHhHHh-------------C
Q 008550 319 VFVALSVLWER-KDERGALS-YAEKSIRIDERHIPGYIMKGNLLLSMKR---PEAAVIAFRGAQEL-------------R 380 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~-------------~ 380 (561)
....++..... .++...+. ++...++.. -+.+...+-.+|-.-.. .++-+..|...+.- .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 33334433333 23332222 223333221 12222222222211110 01111111111111 1
Q ss_pred CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 008550 381 PDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALAL 458 (561)
Q Consensus 381 ~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 458 (561)
|.. ..++.++..+...|+++.|..+++.++...|.-++.+...|.++... |++++|..++..+.+++..+..+-...
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~-G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA-GLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccchhHHHHHHH
Confidence 111 23567788888899999999999999999998889998899998887 999999999999888886665555577
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 008550 459 AELHVIEGRNGDAVSLLERYLKDWADD--------SLHVKL--AQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l--a~~~~~~g~~~~A~~~~~~al 512 (561)
|....+.++.++|.+.+.+.-+...+. -.|+.+ |..|.++|++..|++-|..+-
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 888888889999988888766544211 244443 777888888877776655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=171.45 Aligned_cols=254 Identities=20% Similarity=0.175 Sum_probs=216.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC
Q 008550 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD 331 (561)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 331 (561)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|.. |.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HhHHHHHHHHHHhccCCChhHHHH-------HHHHHHhcCChhHHHHHHHHhHHhCC---ChHHHHHHHHHHHhcCCHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIM-------KGNLLLSMKRPEAAVIAFRGAQELRP---DLRSYQGLVHSYLQFSKVKE 401 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 401 (561)
-.+|++++.+-+...|........ ...-......+..-.+.|-.+....| +..+...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 889999999999887653221110 00001111123334455666665555 34679999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
|+.+|+.++...|++...|+.+|..+..- .+.++|+..|.+|+++.|....+++++|..+..+|.|++|.++|-.++.+
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANG-NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986 89999999999999999999999999999999999999999999999987
Q ss_pred CCC-----------hHHHHHHHHHHHHcCCHHHHHHH
Q 008550 482 WAD-----------DSLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 482 ~~~-----------~~~~~~la~~~~~~g~~~~A~~~ 507 (561)
.+. ..+|..|-.++...++.+-+...
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 643 14888888888888888755544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-18 Score=145.33 Aligned_cols=418 Identities=14% Similarity=0.131 Sum_probs=298.0
Q ss_pred HHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhh
Q 008550 8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSS 87 (561)
Q Consensus 8 ~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 87 (561)
+..++.+.+|+-|+.+.++-+.. ..++.-....++|.++|+.|+|++|+..|+-+.+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------------- 87 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------------- 87 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--------------
Confidence 45667777888888877776543 123334567788888888888888888888877643
Q ss_pred cccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 88 LSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
..+.++...+|.|+.-+|.|.+|.....+.+..|-..+.++.++ .+.|+-++ +..|..-
T Consensus 88 -----------------~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhla---hklndEk~-~~~fh~~ 146 (557)
T KOG3785|consen 88 -----------------DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLA---HKLNDEKR-ILTFHSS 146 (557)
T ss_pred -----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH---HHhCcHHH-HHHHHHH
Confidence 13345777888888888888888888877766654433333333 33344322 2233332
Q ss_pred HhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 008550 168 LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN 247 (561)
Q Consensus 168 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 247 (561)
+.... +-. +.+|.+.+..-.|.+|+++|.+++..+|+
T Consensus 147 LqD~~---Edq----------------------------------------LSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 147 LQDTL---EDQ----------------------------------------LSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HhhhH---HHH----------------------------------------HhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 22111 111 22267777778899999999999999998
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc--CCHhHH----------------HHHHH--
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK--CDYSKL----------------SKLVH-- 307 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A----------------~~~~~-- 307 (561)
.......+|.||.++.-++-+.+.+.-.++..|+++-+....+..+++. |+..++ ..+++
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 8888889999999999999999999999999999987777666655543 222211 11111
Q ss_pred --------HHHhcCC----CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 008550 308 --------DLLSIDP----SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (561)
Q Consensus 308 --------~~~~~~~----~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 374 (561)
.+++.-| .-|++..++...|.. ++..+|+...+. ++|..|.-+...|.++...|+--...+.++
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1111112 126778888888888 999999887764 689999999999999998887655554444
Q ss_pred Hh---HHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 375 GA---QELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 375 ~~---~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
-+ +.+-..+ +....++.+++-..++++.+.++...-...-++....++++.+.... |++.+|.+.|-+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at-gny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT-GNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh-cChHHHHHHHhhh
Confidence 43 3332211 23667888888889999999999998888888999999999999998 9999999999876
Q ss_pred HHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 445 LRLEPGY-LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-D--SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 445 ~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
-...-.+ ......+++||.+.|.++-|...+-+ .+.+ . ..+..+|...++.+++--|.+.|...-.++|+
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 5444223 33446789999999999999988754 3322 2 56677788888999999999999988888875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-18 Score=144.98 Aligned_cols=291 Identities=20% Similarity=0.260 Sum_probs=223.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 145 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
+..|.-+.-.++.++|+..|..+++.+|...++...| |..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL----------------------------------------GnL 78 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL----------------------------------------GNL 78 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH----------------------------------------HHH
Confidence 3455566667778888888888888888777777666 677
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 225 CIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+.+.|..+.|+.+-+.+++. |+- ..+...+|.-|+..|-++.|...|....+....-..++..+..+|....+|
T Consensus 79 fRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 79 FRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 77778888888877766653 322 356778888888888888888888888776655667888888888888888
Q ss_pred hHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 300 SKLSKLVHDLLSIDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
++|++..++..++.+.. +..+..++..+.. .+.+.|+..+.++++.+|+...+-+.+|.+....|+|+.|++.+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence 88888888888877766 3467778877777 89999999999999999999999999999999999999999999
Q ss_pred HHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 374 RGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 374 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
+.+++.+|+. .+...+..+|...|+.++.+.++.++.+..+. +.+...++...... .-.+.|..++.+-+...|+-
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~-~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ-EGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh-hChHHHHHHHHHHHhhCCcH
Confidence 9999999997 56788899999999999999999999988874 45555566666665 66788888888888888875
Q ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHHHH
Q 008550 452 LGAALALAELHVI---EGRNGDAVSLLERYL 479 (561)
Q Consensus 452 ~~~~~~la~~~~~---~g~~~~A~~~~~~~~ 479 (561)
...+ .+...... .|...+.+..+.+++
T Consensus 316 ~gf~-rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 316 RGFH-RLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHH-HHHHhhhccccccchhhhHHHHHHHH
Confidence 3333 33333322 233455555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=157.86 Aligned_cols=292 Identities=19% Similarity=0.188 Sum_probs=242.4
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHH
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 117 (561)
.....++-....|..++++..|.+|+..|..|++.+|++. ..|...+.+
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a-------------------------------~yy~nRAa~ 92 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNA-------------------------------SYYSNRAAT 92 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccch-------------------------------hhhchhHHH
Confidence 4566677888899999999999999999999999987553 467788999
Q ss_pred HHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 118 HFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
++..|++++|.-..+. +...+.........++++...++..+|...++ +..+. .+..
T Consensus 93 ~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~--------------~~an 150 (486)
T KOG0550|consen 93 LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY--------------KAAN 150 (486)
T ss_pred HHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh--------------HHhh
Confidence 9999999999998866 66668888899999999999999999988887 11111 0111
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
.+.......+.....+.-+...++.+.|+...|++++|...--.+++.++.+.++++..|.+++..++.+.|+.+|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 11122222232333355555677889999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCh------------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh-cCHhHHHHHH
Q 008550 277 SIDPYIM------------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP----EVFVALSVLWER-KDERGALSYA 339 (561)
Q Consensus 277 ~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~-~~~~~A~~~~ 339 (561)
.++|+.. ..+..-|.-.++.|++..|.++|..++.++|++. ..|.+.+.+..+ |+..+|+...
T Consensus 231 ~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 9999874 3456678888899999999999999999999873 457777788888 9999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC
Q 008550 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (561)
+.++.++|....++...|.++..++++++|++.|+++++...+
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999888665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-19 Score=142.59 Aligned_cols=202 Identities=18% Similarity=0.169 Sum_probs=117.7
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc
Q 008550 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 396 (561)
+...+|.-|.. |++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++ +++++.|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 44455555555 555555555555555555555555555555555555555555555555555555 4455555555555
Q ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008550 397 SKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 474 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 474 (561)
|++++|...|++++. ..|..+..+.++|.|..+. |+++.|.++|+++++.+|+++.....++..++..|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555554 2344455666666666665 6666666666666666666666666666666666666666666
Q ss_pred HHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 475 LERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 475 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
+++.....+.. +.+....++-...|+-..|-++=.+..+..|..++.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 66655544422 445555556666666666666666666666655543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=160.22 Aligned_cols=266 Identities=17% Similarity=0.125 Sum_probs=209.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
.-.|..++...+|..|+..+..+++..|++...|...+.++...|++++|....++.++++|..+......+.++...++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34478889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHH------------hcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHH
Q 008550 299 YSKLSKLVHDLL------------SIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (561)
Q Consensus 299 ~~~A~~~~~~~~------------~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 359 (561)
..+|...++..- .+.|.+ ..+-..-+.++.. +++++|...--..+++++.+..+.+..|.+
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence 887776554211 111111 1233344556666 888888888888888888888888888888
Q ss_pred HHhcCChhHHHHHHHHhHHhCCChH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC----HHHHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDLR-------------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKL 422 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~ 422 (561)
+...++.+.|+..|++++.++|+.. .+..-|.-.++.|++.+|.+.|..++.++|++ +..+.+
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 8888888888888888888888751 24455666777778888888888888777765 455677
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
++.+.... |+..+|+.....+++++|....++...|.|+..++++++|++.++++++...+.
T Consensus 293 ra~v~~rL-grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 293 RALVNIRL-GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred hHhhhccc-CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 77777776 777888888888888877777777777888888888888888888877776554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-17 Score=141.30 Aligned_cols=270 Identities=18% Similarity=0.218 Sum_probs=142.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAML 292 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~ 292 (561)
.|..|.-+.-..+.++|+..|..+++.+|...++.+.+|..+...|..+.|+.+-+..++. |+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666666666666665554432 332 2345555666
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
|+..|-++.|..+|..+.+....-..+...+..+|.. .+|++|++.-++..++.+...... ++
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e--IA-------------- 180 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE--IA-------------- 180 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH--HH--------------
Confidence 6666666666666655555444444555555555555 555555555555555554432110 00
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
..|..++..+....+.+.|+..+.++++.+|++..+-..+|.+.... |+++.|++.++.+++.+|..
T Consensus 181 ------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 181 ------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK-GDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred ------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc-cchHHHHHHHHHHHHhChHH
Confidence 01334444444445555555555555555555555555555555554 55555555555555555544
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 452 -LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 452 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+++...+..+|.+.|+..+....+.++.+..+....-..++..-....-.+.|..+..+-+...|+
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 234444555555555555555555555555554444444444444444445555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=138.96 Aligned_cols=203 Identities=15% Similarity=0.102 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
....+|.-|+..|++..|..-++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.++|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 34555888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
|++++|...|++++.. .|..+..+.++|.|..+ |+++.|..+|++++..+|+.+.....++..++..|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999888863 44556788888888888 88888888888888888888888888888888888888888888
Q ss_pred HHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH
Q 008550 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419 (561)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 419 (561)
+......+-. +++.....+--..|+-+.+-.+=.+....+|.....
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8776665433 445555666677777777777777777777766554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=153.70 Aligned_cols=196 Identities=14% Similarity=0.074 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555554444444444444
Q ss_pred h-cCHhHHHHHHHHHHhcc--CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 329 R-KDERGALSYAEKSIRID--ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
. |++++|+..+++++... |... ..+..+|.++...|++++|...
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~---------------------------------~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPA---------------------------------RSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccch---------------------------------HHHHHHHHHHHHcCCHHHHHHH
Confidence 4 44444444444444321 1112 2344444555555555555555
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+.+++...|+++..+..+|.++... |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 158 LTRALQIDPQRPESLLELAELYYLR-GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555555555555554 55555555555555544444444444455555555555554444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-18 Score=152.92 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
....+..|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.+...+..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 295 VKCDYSKLSKLVHDLLSID--PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
..|++++|+..+++++... +.....+..+|.++.. |++++|...+.+++...|.++..+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999853 4556788889999988 999999999999999999988888899999999999999999
Q ss_pred HHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.+++++...|.. ..+..++.++...|+.++|..+.+.+....|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 998888886655 4566777888888888888887777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-18 Score=152.36 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH--hHHHHH
Q 008550 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE--RGALSY 338 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~A~~~ 338 (561)
++.++|+..+.++++++|.+..+|...+.++...| ++++++..+++++..+|++..+|...+.++.. ++. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 34445555555555555555555555555555554 34555555555555555555555555544444 332 345555
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc---CC----HHHHHHHHHHHH
Q 008550 339 AEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF---SK----VKEALYAAREAM 410 (561)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~----~~~A~~~~~~~~ 410 (561)
++++++.+|++..+|..++.++...|++++++..+.++++.+|.+ .+|..++.+.... |. .++++.+..+++
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555554 3455555544433 11 245666777777
Q ss_pred HHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 411 KAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
..+|++..+|..++.++... .++..+|...+.+++...|.++.++..++.++..
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77777777777777777662 0344567777777777777777777777777764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=149.23 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=203.2
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c-CHhHHHHHHH
Q 008550 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K-DERGALSYAE 340 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~A~~~~~ 340 (561)
++|.+|..+|+.++. ..++.++|+..+.+++.++|.+..+|...+.++.. | ++++++..++
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 455566666665544 45677899999999999999999999999999988 6 6899999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCCh--hHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSMKRP--EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
++++.+|++..+|..++.++...|+. ++++.++.++++.+|.+ .+|...+.++...|+++++++.+.++++.+|.+.
T Consensus 97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999999988874 78899999999999998 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh--cCC----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCh-H
Q 008550 418 KALKLVGDVHASN--ASG----REKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADD-S 486 (561)
Q Consensus 418 ~~~~~l~~~~~~~--~~~----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~-~ 486 (561)
.+|+.++.++... .|. .++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.+ .
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 9999999987654 022 2578888899999999999999999999988 456678999999998887766 7
Q ss_pred HHHHHHHHHHHcC------------------CHHHHHHHHHHHHhcCCccHHHH
Q 008550 487 LHVKLAQVFAATN------------------MLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 487 ~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
++..++.+|.... ..++|...++..-+.+|=-..-|
T Consensus 257 al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 257 ALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 7888888887632 23567777777655555433333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-16 Score=148.43 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=137.8
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
+|+.+..+..+|.++...|+++.|...+.++.+..|.+......
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~------------------------------------ 45 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER------------------------------------ 45 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH------------------------------------
Confidence 46777788888888888888888888888887777754332211
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH----HHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND----EAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
.+..+..+...|++++|...+++++..+|++..++.. +..+...|++. .+...+......+|.....+..+|.+
T Consensus 46 -~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 46 -AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 2334777778888888888888888888888766654 44554444433 33333333223445555566666777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI----PGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 367 (561)
+...|++++|...++++++..|+++.++..+|.++.. |++++|+.++++++...|.++ ..+..+|.++...|+++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 7777777777777777777777777777777777776 777777777777777665432 23445677777777777
Q ss_pred HHHHHHHHhHHhCC
Q 008550 368 AAVIAFRGAQELRP 381 (561)
Q Consensus 368 ~A~~~~~~~~~~~~ 381 (561)
+|+..+++++...|
T Consensus 204 ~A~~~~~~~~~~~~ 217 (355)
T cd05804 204 AALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHhcccc
Confidence 77777776654444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-15 Score=143.57 Aligned_cols=298 Identities=12% Similarity=-0.037 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
+.+...|..+...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|.+..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 334444888888899999999999888876644 5677788999999999999999999999999999877664 445
Q ss_pred HHhcC----CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 008550 293 LKVKC----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 293 ~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (561)
+...| ....+...+.......|.....+..+|.++.. |++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 54444 44445555544445566667777888889998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC--CHHHHHHH---HHHHhhhcCChHHH
Q 008550 368 AAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKLV---GDVHASNASGREKA 437 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l---~~~~~~~~~~~~~A 437 (561)
+|+..+++++...|.. ..+..++.++...|++++|+..+++++...|. ........ ...+... |....+
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 244 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA-GHVDVG 244 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc-CCCChH
Confidence 9999999999987632 23668999999999999999999999766662 22211111 2222222 433333
Q ss_pred HHH--H-HHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----------hHHHHHHHHHHHHcCCHH
Q 008550 438 KKF--Y-ESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD----------DSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 438 ~~~--~-~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~la~~~~~~g~~~ 502 (561)
..+ . .......|. ........+.++...|+.++|...++........ ..+....+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 1 111111122 2233346788899999999999999887664322 156788899999999999
Q ss_pred HHHHHHHHHHhcC
Q 008550 503 EALSHYEAALRIN 515 (561)
Q Consensus 503 ~A~~~~~~al~~~ 515 (561)
+|...+..++.+.
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-15 Score=123.84 Aligned_cols=392 Identities=12% Similarity=0.045 Sum_probs=257.8
Q ss_pred HHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchh
Q 008550 6 EQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (561)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (561)
.-+..++...+|..||.+...-....+. ....+-.+|.+|+...+|..|..+|++.-...|...
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~--------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-------- 78 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR--------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-------- 78 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH--------
Confidence 3467788999999999877666554322 223778899999999999999999999988875433
Q ss_pred hhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCccc-chhHHHHHHHHHHhcCChhhHHHHH
Q 008550 86 SSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR-NLQMSLLMAKLYRNSRHNRGAVACY 164 (561)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 164 (561)
..++..|..+.+.+.+.+|+.++..+...+. .....-+-+-+....+++..+....
T Consensus 79 -----------------------qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 79 -----------------------QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred -----------------------HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 4677788999999999999998887755431 2233344455556667776666555
Q ss_pred HHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 165 KECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 165 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
++.-.. +...... ..|.+.++.|++++|++-|+.+++.
T Consensus 136 eQlp~e--n~Ad~~i----------------------------------------n~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 136 EQLPSE--NEADGQI----------------------------------------NLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HhccCC--Cccchhc----------------------------------------cchheeeccccHHHHHHHHHHHHhh
Confidence 543211 1111111 1277888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CCCC-------------------------hHHHHHHHHHHHh
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYI-------------------------MTYMDEYAMLLKV 295 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~ 295 (561)
..-++-+-+.++.++++.|+++.|+++...+++. .|.. .+++...+-++++
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 8888999999999999999999999988777653 3322 2345566778889
Q ss_pred cCCHhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 296 KCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.++++.|.+.+..+-.... -+|..+.+++..-..+++.....-+.-.+.++|-.++.+.++-.+|++..-++.|...+
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 9999999877655433222 23667777777666688888888899999999988889999999999988888887765
Q ss_pred HHhHHhCCCh------HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC----ChHHHHHHHH
Q 008550 374 RGAQELRPDL------RSYQGLVHSY-LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----GREKAKKFYE 442 (561)
Q Consensus 374 ~~~~~~~~~~------~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~~~A~~~~~ 442 (561)
-. +|+. +-.+.+-..+ ...-..++|.+-+...-...-+. ....-..+...... ....|++.|+
T Consensus 334 AE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd 407 (459)
T KOG4340|consen 334 AE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYD 407 (459)
T ss_pred hh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 43 3442 1223333333 23445666666555443321110 01111111111101 1133444445
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH
Q 008550 443 SALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSL 487 (561)
Q Consensus 443 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 487 (561)
+++++. ..+....+++++...+|..+.+.|.+..+...++++
T Consensus 408 ~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 408 ETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 544432 344555666666666666666666666665554433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-14 Score=131.70 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=260.0
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 123 (561)
..++.--..+.+.|+|++|++.-.+++...| ++.++......|+++.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-------------------------------dd~~a~~cKvValIq~~k 61 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP-------------------------------DDEDAIRCKVVALIQLDK 61 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC-------------------------------CcHhhHhhhHhhhhhhhH
Confidence 3455555677889999999999999999876 444577788899999999
Q ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 124 TKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 124 ~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
|++|+...+.-..........+..+.|.++.+..++|+.+++- .++.+...
T Consensus 62 y~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~---~~~~~~~l-------------------------- 112 (652)
T KOG2376|consen 62 YEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG---LDRLDDKL-------------------------- 112 (652)
T ss_pred HHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc---ccccchHH--------------------------
Confidence 9999987776432222233347899999999999999999992 23322111
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-C
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY-I 282 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~ 282 (561)
..+.|.++++.|+|++|..+|+.+.+.+.++.+............. ..+ . ..+.+...|. .
T Consensus 113 --------------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 113 --------------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDS 174 (652)
T ss_pred --------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcch
Confidence 1234999999999999999999999887776655544333222111 111 1 3334444454 5
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC--------CCC-------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID--------PSR-------PEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~-------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
.+.+++.+.++...|+|.+|++.+++++++. .++ ..+...++.++.. |+..+|...|...++.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 6789999999999999999999999994321 111 1256778888888 99999999999999999
Q ss_pred CCChhHHHHHHHHHHhcC---Ch-h-HHHHHHHHhHHhCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMK---RP-E-AAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~---~~-~-~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
|.+........+-+.... ++ + .++..++......++. ..+.+.+...+..+..+.+.+.....-
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 887654333222222111 11 1 1222232222222211 235666777777777777766665555
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH--------hh
Q 008550 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LGAALALAELHVIEGRNGDAVSLLERYL--------KD 481 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~ 481 (561)
...|................ ..+.+|.+.+....+.+|.+ ..+.+.++.+...+|+++.|++.+.... +.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~-~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVRE-KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCchHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 55554433333444444444 46788999999999989987 5678889999999999999999999443 33
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 482 WADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 482 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
...+.+-..+-..+...++...|...+..++.
T Consensus 414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred ccChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 33333334444456666665555555555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-14 Score=123.68 Aligned_cols=377 Identities=15% Similarity=0.075 Sum_probs=259.5
Q ss_pred HhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 008550 52 SLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEM 131 (561)
Q Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l 131 (561)
-+....+|..|+..++-....+. -.+..+...+|.|+..+|+|++|+..+
T Consensus 31 dfls~rDytGAislLefk~~~~~------------------------------EEE~~~~lWia~C~fhLgdY~~Al~~Y 80 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR------------------------------EEEDSLQLWIAHCYFHLGDYEEALNVY 80 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch------------------------------hhhHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45667899999999888775531 122457888999999999999999999
Q ss_pred hcCCC-cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCC
Q 008550 132 EGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 132 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
+.+.. +..+.+.+..++.+++-.|.|.+|...-.++ |+++-....+..+
T Consensus 81 ~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhl-------------------------- 130 (557)
T KOG3785|consen 81 TFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHL-------------------------- 130 (557)
T ss_pred HHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHH--------------------------
Confidence 98643 3556788999999999999999998766554 5555444333222
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
..+.++-++-.. |.+-+. +..+-...+|.+++..-.|.+|+..|.+++..+|+....-..++
T Consensus 131 --------------ahklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~A 192 (557)
T KOG3785|consen 131 --------------AHKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMA 192 (557)
T ss_pred --------------HHHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHH
Confidence 223333333222 222222 22345567788888888899999999999999999988888999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCHhHH----------------HHHHH----------H
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGA----------------LSYAE----------K 341 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A----------------~~~~~----------~ 341 (561)
.||.++.-++-+.+++.-.++..|+++.+....+....+ |+..++ ...++ .
T Consensus 193 LCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEg 272 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEG 272 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCcc
Confidence 999999999999999999999999998887776655443 332211 11111 1
Q ss_pred HHhccCC----ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHH---HHHC
Q 008550 342 SIRIDER----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREA---MKAM 413 (561)
Q Consensus 342 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~---~~~~ 413 (561)
+++.-|. -|++..++...|.+.++..+|+...+. ++|..+- |...|.+....|+--...+.++.+ +.+-
T Consensus 273 ALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 273 ALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 1222221 245677788888888888888877665 4666543 666677776666544443333332 2222
Q ss_pred C------CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--
Q 008550 414 P------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-- 485 (561)
Q Consensus 414 p------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 485 (561)
. +...-...++.+++-. .++++.+.++...-....++....++++..+...|++.+|.+.|-+.-...-.+
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~-~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLS-FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred cccccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 1 2233445566666665 778888888777666666777788889999999999999998887654433222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEA 510 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~ 510 (561)
.....+|+||...|.++-|-..+-+
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHh
Confidence 4567789999999999888776644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-16 Score=146.45 Aligned_cols=242 Identities=17% Similarity=0.120 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.|.-..+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+....
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555666677888888888888888888888876 22222333335555555555555555555554321000
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHH-hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC-----h----HHH
Q 008550 317 PEVFVALSVLWERKDERGALSYAEKSI-RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-----L----RSY 386 (561)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~ 386 (561)
. ..+|.-..++.++|.+|...|++++|..++++++++... . ..+
T Consensus 275 --------------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 275 --------------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred --------------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 0 001122234455555555555555555555555544211 1 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--------CC
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAM--------PQSAKALKLVGDVHASNASGREKAKKFYESALRLE--------PG 450 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------p~ 450 (561)
..++.++...+++++|..++++++++. |.-+....++|.++..+ |++++|.+.|++++... +.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcccCcChh
Confidence 555666666666666666666655432 12245566666666666 66666666666666542 11
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDW----AD---D-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~---~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
....+..+|..+.+.+++.+|...|..+..+. |+ . ..+.+||.+|..+|++++|.++-++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23355666666777777776666666665543 21 1 5667777777777777777777777663
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-14 Score=138.79 Aligned_cols=294 Identities=14% Similarity=0.119 Sum_probs=230.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+.++.++...|++++|++.+++.....++...+.-..|.++..+|++++|...|...++.+|++...+..+..+.....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 34558899999999999999999999899999999999999999999999999999999999999999999988874433
Q ss_pred -----CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh-HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 298 -----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 298 -----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
..+....+|++.....|....+.. +...+.. ..+. .+..++...+.. .-|..+..+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 567778889988888887643322 2222223 3444 344444555433 34556666666665444333333
Q ss_pred HHHHHhHHh----------------CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 371 IAFRGAQEL----------------RPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 371 ~~~~~~~~~----------------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
.++...... .|.. .+++.++..|...|++++|+.+++++++..|..++.+...|.++... |
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA-G 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-C
Confidence 333332211 1222 24678899999999999999999999999999999999999999998 9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHH--HHHHHHHHHcCCHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLH--VKLAQVFAATNMLQ 502 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~--~~la~~~~~~g~~~ 502 (561)
++.+|..+++.+-.+++.+-.+-...+..+.+.|+.++|.+.+....+.+.++ -.| ...|.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999998888889999999999999999999887655221 234 55699999999999
Q ss_pred HHHHHHHHHHhcC
Q 008550 503 EALSHYEAALRIN 515 (561)
Q Consensus 503 ~A~~~~~~al~~~ 515 (561)
.|++.|..+.+..
T Consensus 323 ~ALk~~~~v~k~f 335 (517)
T PF12569_consen 323 LALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887663
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-13 Score=121.94 Aligned_cols=292 Identities=17% Similarity=0.095 Sum_probs=232.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 297 (561)
...|..-+..|+|.+|.....+.-+..+...-.+..-+.+..+.|+++.|-.++.++-+..+++ .......+.++...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 3447788889999999999999877777766677777889999999999999999999985544 466788899999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhH---HHHHHH--HHHhcCC---hhH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPG---YIMKGN--LLLSMKR---PEA 368 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~~~---~~~ 368 (561)
+++.|..-..++.+..|.++++......+|.. |++.....++.+..+..--+..- +-..+. ++.+.++ .+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999 99999999998887654332211 111111 1112222 222
Q ss_pred HHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
-..+++..-..-..+ +....++.-+...|+.++|.++.+.+++..-+.. ....++.+ . .++...=++..++.++.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~-~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--R-PGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--C-CCCchHHHHHHHHHHHh
Confidence 223444432222222 3456778888999999999999999998765433 33333333 2 38889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 448 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|+++..+..+|.++.+.+.+.+|..+|+.+++..|+...+..+|.++.++|+..+|.+.++.++..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999854
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=144.13 Aligned_cols=216 Identities=19% Similarity=0.196 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHh-cCHhHHHHHHHHHHhc--------cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC-----CCh
Q 008550 318 EVFVALSVLWER-KDERGALSYAEKSIRI--------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR-----PDL 383 (561)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~ 383 (561)
.+...++..|.. |++++|+..++.++.. .|.-......+|.+|...+++.+|+..|++++.+. +++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444 5555555555555444 22223334468999999999999999999998873 233
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC---
Q 008550 384 ----RSYQGLVHSYLQFSKVKEALYAAREAMKAM--------PQSAKALKLVGDVHASNASGREKAKKFYESALRLE--- 448 (561)
Q Consensus 384 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--- 448 (561)
.++.+|+.+|...|++++|..++++++++. |.-+..+..++.++..+ +++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-NEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhh
Confidence 248899999999999999999999998754 22356778888899988 99999999999998752
Q ss_pred --CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 449 --PG---YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD---------DSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 449 --p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+. -+..+.++|.+|..+|++++|.+++++++..... ...+..+|..|.+.+++.+|...|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22 3567899999999999999999999999987521 157789999999999999999999988776
Q ss_pred -------CCccHHHHHHHHHHHHhccC
Q 008550 515 -------NSQNEAAKKGLERLEKQMKG 534 (561)
Q Consensus 515 -------~p~~~~~~~~l~~l~~~~~~ 534 (561)
.|+-...+.+|+.++..+|+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 35556788999999999873
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-14 Score=137.20 Aligned_cols=296 Identities=15% Similarity=0.096 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
++.+..+.++...|++++|+..|+..... .+...+.-..|.++.+.|++++|...|..+++.+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 57788889999999999999999985443 66777888999999999999999999999999999999999888776511
Q ss_pred c-----ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 188 P-----KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK-GGLELFAELLQRFPNNIHILLEMAKVDAI 261 (561)
Q Consensus 188 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (561)
. .................|.... +......+..| ..|. .+..++...+.. .-|.++..+-.+|..
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~-~~rl~L~~~~g------~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d 155 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDA-PRRLPLDFLEG------DEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKD 155 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccc-hhHhhcccCCH------HHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcC
Confidence 1 1222222222222222221110 00000000011 1222 223333344333 234444444444443
Q ss_pred hCCHHHHHHHHHHHHhh---------------CCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 262 IGKNDEAILNFEKVRSI---------------DPYI--MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
..+..-....+...... .|.. .++++.++..|...|++++|+.++++++...|..++.+...|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 32222222222222211 1111 246688899999999999999999999999999999999999
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--CCh-----H-HHH--HHHHHH
Q 008550 325 VLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-----R-SYQ--GLVHSY 393 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-----~-~~~--~l~~~~ 393 (561)
.++.. |++.+|...++.+..+++.+-.+....+..+++.|++++|...+......+ |.. . .|+ ..|.+|
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999988888888999999999999998888775544 211 1 344 568899
Q ss_pred HhcCCHHHHHHHHHHHHHHC
Q 008550 394 LQFSKVKEALYAAREAMKAM 413 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~ 413 (561)
.+.|++..|++.|..+.+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 99999999999988887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-16 Score=136.38 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=130.0
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHH
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 117 (561)
..+..+..++.+|..++..|+|++|+..|++++..+|.++ ....+++.+|.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------------------~~~~a~~~la~~ 79 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP----------------------------YAEQAQLDLAYA 79 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch----------------------------hHHHHHHHHHHH
Confidence 4567788999999999999999999999999999987554 223578999999
Q ss_pred HHhcCCHHHHHHHHhcC-CCcccchh---HHHHHHHHHHhc--------CChhhHHHHHHHHHhcCCCcHHHHHHHHHHc
Q 008550 118 HFALGETKAAIVEMEGI-PSKARNLQ---MSLLMAKLYRNS--------RHNRGAVACYKECLRHCPFFIEAITALAELG 185 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~-~~~~~~~~---~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (561)
+...|++++|+..++.+ ...|+++. +++.+|.++... |++++|+..|++++..+|++..+...+..+.
T Consensus 80 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 80 YYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD 159 (235)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH
Confidence 99999999999999985 44465554 789999999876 8899999999999999999877665443221
Q ss_pred CCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh
Q 008550 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAII 262 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~ 262 (561)
...... -...+..|..++..|++.+|+..++++++..|++ +.+++.+|.++...
T Consensus 160 ~~~~~~-----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 160 YLRNRL-----------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 100000 0001122444555555555555555555554432 34555555555555
Q ss_pred CCHHHHHHHHHHHHhh
Q 008550 263 GKNDEAILNFEKVRSI 278 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~ 278 (561)
|++++|..+++.+...
T Consensus 217 g~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 217 GLKDLAQDAAAVLGAN 232 (235)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5555555555444433
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-13 Score=116.24 Aligned_cols=292 Identities=15% Similarity=0.049 Sum_probs=219.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHH
Q 008550 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI 226 (561)
Q Consensus 147 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (561)
-|..-...|+|.+|.....+.-+..+...-++ ..-+...-
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~----------------------------------------l~aA~AA~ 129 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAY----------------------------------------LLAAEAAQ 129 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHH----------------------------------------HHHHHHHH
Confidence 34455567788888887777655554432222 22267777
Q ss_pred HccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
+.|+++.|-.++.++-+..+ +...+...++++....|++..|.....++.+..|.++.++.....+|...|++.+...+
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence 78888888888888877733 33566777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCCHH-H-----HHHHHHHHHh---cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 306 VHDLLSIDPSRPE-V-----FVALSVLWER---KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 306 ~~~~~~~~~~~~~-~-----~~~l~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.++-+..--+.+ . +...|.+-.. +..+.-..+++..-..-..++.....++.-+..+|+.++|.+..+.+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8777765433322 1 1111111111 22223333555544444566888888999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHH
Q 008550 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
++..-+...... .-....+++..=++..++.+...|+++..+..+|..+.+. +.|.+|..+|+.+++..|+ ...+.
T Consensus 290 Lk~~~D~~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-~~w~kA~~~leaAl~~~~s-~~~~~ 365 (400)
T COG3071 290 LKRQWDPRLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN-KLWGKASEALEAALKLRPS-ASDYA 365 (400)
T ss_pred HHhccChhHHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCC-hhhHH
Confidence 998766652211 2235678899999999999999999999999999999998 9999999999999999876 57788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
.+|.++.+.|+..+|....+.++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999988543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=128.99 Aligned_cols=185 Identities=18% Similarity=0.107 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH---H
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---Y 285 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 285 (561)
......++..|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34444566668888888888888888888888888765 56788888888888888888888888888887765 5
Q ss_pred HHHHHHHHHhc--------CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 286 MDEYAMLLKVK--------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 286 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
++.+|.++... |++++|+..+++++..+|++...+..+..+... +.. ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL-----------------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 77777777665 455566666666666665554443222211111 000 0112234
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (561)
|.++...|++.+|+..+++++...|+. .+++.+|.++...|++++|..+++.+...+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 444555555555555555555544432 234455555555555555555444444433
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-11 Score=111.11 Aligned_cols=366 Identities=15% Similarity=0.130 Sum_probs=255.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CcHHHHHHHHH---------HcCC------cc---cHhHHhhccc
Q 008550 141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCP---FFIEAITALAE---------LGAT------PK---DIISLFAQTP 199 (561)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~---------~~~~------~~---~~~~~~~~~~ 199 (561)
...|..||..|.+.|.+++|...|++++..-- +...++...+. +... .+ +.+-.+..+.
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 34678899999999999999999999987543 22222211111 0100 00 0111111111
Q ss_pred cccCCC---------CCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHhCC
Q 008550 200 NRSGRA---------PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNN-----IHILLEMAKVDAIIGK 264 (561)
Q Consensus 200 ~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~~~ 264 (561)
...... ..++.....|. -.+-+..|+..+-+..|.++++. +|.- ...|..+|..|...|+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~-----kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWH-----KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHH-----hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 111111 12222333444 34555678899999999999874 5543 4688899999999999
Q ss_pred HHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC------------------CHHHHHH
Q 008550 265 NDEAILNFEKVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------------------RPEVFVA 322 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~ 322 (561)
.+.|...|+++.+..-.. ..+|...|..-....+++.|..+.+++...... +..+|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 999999999999875433 467888888888999999999999988754222 1346778
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHH---HHHHHHHh
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQ---GLVHSYLQ 395 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~---~l~~~~~~ 395 (561)
++.+... |-++.....|++.+.+.--.|....+.|..+....-++++.+.|++.+.+.+-. +.|. .....-+.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 8888888 999999999999999998899999999999999999999999999999986543 3343 23333344
Q ss_pred cCCHHHHHHHHHHHHHHCCCC-HH-HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCh
Q 008550 396 FSKVKEALYAAREAMKAMPQS-AK-ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI-----EGRN 468 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~-~~-~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-----~g~~ 468 (561)
....+.|..+|+++++..|.. .. .+...+..-... |-...|+..|+++...-+. .-.+.+-.+|.+ -| .
T Consensus 563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~-GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yG-v 638 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH-GLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYG-V 638 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhC-C
Confidence 558899999999999988732 22 344455555555 8888999999997654332 222223333322 12 2
Q ss_pred HHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 469 GDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
..-..+|+++++.-|+. ......+..-.++|..+.|...|..+-++.
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 34567888888888876 577888888899999999999998887764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=119.63 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=92.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
..++++++.+|++ +..+|.++... |++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQE-GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4566777776653 44567777776 7777777777777777777777777777777777777777777777777777
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
++ ..++.+|.++...|++++|+..|++++++.|+++..+..++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 66 77777777777777777788888888777787777777777665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-14 Score=115.22 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=161.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+..|..+-....+....|+.+-|..+++++....|++..+....|..+...|++++|+++|+..++.+|.+...+....-
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 44555544456777888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC---Chh
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK---RPE 367 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 367 (561)
+...+|+.-+|++.+...++.++.|+++|..++.+|.. |++++|.-++++++-+.|.++..+..+|.+++..| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999999 99999999999999999999999999999988776 566
Q ss_pred HHHHHHHHhHHhCCCh-HHHHHHHHHH
Q 008550 368 AAVIAFRGAQELRPDL-RSYQGLVHSY 393 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~ 393 (561)
-|.++|.++++++|.+ .+++.+..+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 7889999999998854 6666554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-14 Score=140.91 Aligned_cols=254 Identities=10% Similarity=0.039 Sum_probs=154.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
..+..+...+++++|+.+++..++.+|+....++.+|.++.+.+++.++... .++...+.+ .++
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~--------------~~~ 99 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN--------------LKW 99 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc--------------cch
Confidence 3355555555555555555555555555555555555555555554444433 333332222 122
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
.++.++-..+...+.+..+++.+|.||.. |+.++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++.
T Consensus 100 -~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 100 -AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred -hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 22333333333355555788888888888 8888888888888888888888888888888888 88888888888865
Q ss_pred hCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHH--------------------HHHHHHhhhcCChHHHH
Q 008550 379 LRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK--------------------LVGDVHASNASGREKAK 438 (561)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~~~~~~~A~ 438 (561)
. +...+++.++..++.+.+..+|++...+. -+-..|... +++++++
T Consensus 178 ~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~-~~~~~~i 243 (906)
T PRK14720 178 R-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL-EDWDEVI 243 (906)
T ss_pred H-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh-hhhhHHH
Confidence 4 55566777777778887777777654432 222444444 6666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 439 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+++.+++.+|.+..+...++.+|. +.|.. ...++..++.. .+-.....+..|+..|++-+..+|.+
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s----------~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS----------DIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh----------ccccCCccHHHHHHHHHHHeeecCCC
Confidence 6666666666666666666666665 33322 33333333221 11111134466666666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=117.99 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 008550 235 LELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (561)
...|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677788877764 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
+++.+++.+|.++.. |++++|+..|++++...|+++..+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888 888888888888888888888888777766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-11 Score=113.30 Aligned_cols=400 Identities=13% Similarity=0.126 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhc-CCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEG-IPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (561)
.++......++.+|+...-...|.+ +..- ..+..+|-..-......|-++-++..|++.++..|...+-+.....
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~-- 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA-- 180 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH--
Confidence 4677788888899998888888876 2222 3455677777777778888999999999999999987665544322
Q ss_pred CCcccHhHHhhccccccCCCCC----CCCChhhHH-----------------------------------HHHHHHHHHH
Q 008550 186 ATPKDIISLFAQTPNRSGRAPF----DHLDSSRWL-----------------------------------HRYVEAQCCI 226 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----------------------------------~~~~~a~~~~ 226 (561)
..++..++.+.......+... .......|. ....+|..|+
T Consensus 181 -~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 181 -KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred -hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 222332222222222111000 000011111 1122366677
Q ss_pred HccCHHHHHHHHHHHHHhCC---CCHHHHHHH-----HHHHHHhC-------------CHHHHHHHHHHHH---------
Q 008550 227 ASNDYKGGLELFAELLQRFP---NNIHILLEM-----AKVDAIIG-------------KNDEAILNFEKVR--------- 276 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l-----a~~~~~~~-------------~~~~A~~~~~~~~--------- 276 (561)
+.|.+++|..+|++++..-- +...++-.. ..+...++ +.+-.+..|+..+
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 77777777777777765422 111111111 11111111 1222233333332
Q ss_pred ---hhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 277 ---SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS-IDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 277 ---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
..+|.+.+-|... +-...|+..+-+..|.+++. .+|.. ...|..+|.+|.. |+.+.|...|+++.+..
T Consensus 340 VlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 2344444444433 33345666667777766654 34433 3467777777777 88888888888877654
Q ss_pred CCC----hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC-------------------hHHHHHHHHHHHhcCCHHHHH
Q 008550 347 ERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-------------------LRSYQGLVHSYLQFSKVKEAL 403 (561)
Q Consensus 347 ~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~ 403 (561)
-.. ..+|...|..-++..+++.|+++.+.+...... ...|...+......|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 322 356777777777777788887777776543211 013556666667777777777
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHH---HHcCChHHHHHHHHHH
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE--PGYLGAALALAELH---VIEGRNGDAVSLLERY 478 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~---~~~g~~~~A~~~~~~~ 478 (561)
..|++++.+.--.|....+.|..+... .-++++.+.|++.+.+. |.-.++|...-..+ +.....+.|..+|+++
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 777777777777777777777777776 77777888887777764 33344554332222 2223567777888888
Q ss_pred HhhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 479 LKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 479 ~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
++..|.. .++...+.+-..-|--..|+..|++|-..
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 8777643 56667777777777777777777776554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-12 Score=136.29 Aligned_cols=298 Identities=15% Similarity=0.066 Sum_probs=215.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-----HHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPN---------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYM 286 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~ 286 (561)
.+.++...|++++|...+..+....+. ...+...++.++...|++++|...+++++...|... .+.
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 366777889999999998887664221 124445577888889999999999999988544432 345
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC--------Chh
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDER--------HIP 351 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--------~~~ 351 (561)
..+|.++...|++++|...+++++...... ..++..++.++.. |+++.|...+++++..... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 677888889999999999999888653322 2355667778777 9999999999988875221 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCC----Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHH-
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRP----DL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALK- 421 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~- 421 (561)
.+..+|.++...|++++|...+.+++.... .. ..+..++.++...|++++|...+.++....+.. .....
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 355678888999999999999999877632 11 236678889999999999999999887653322 11111
Q ss_pred ---HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----h--HH
Q 008550 422 ---LVGDVHASNASGREKAKKFYESALRLEPGYLG----AALALAELHVIEGRNGDAVSLLERYLKDWAD-----D--SL 487 (561)
Q Consensus 422 ---~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~ 487 (561)
.....+... |+.+.|..++.......+.... .+..++.++...|++++|...+++++..... . .+
T Consensus 655 ~~~~~~~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMT-GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 112333344 8888888887775543222221 2457889999999999999999999875321 1 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
+..+|.++...|+.++|...+.+++++.....
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 78899999999999999999999999875543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-14 Score=123.37 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMT 284 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 284 (561)
.+.+-+.|.-+++.|++...+.+|+.+++...++. .+|.++|.+|+.+++|++|+++-..-+.+ .-....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 44556679999999999999999999999877764 56778999999999999999875433322 122234
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHH
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 357 (561)
..-++|..+...|.|++|+.++.+-+.... ....+++++|.+|.. |+.-.- ..|.....+..-
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g~f~~e- 166 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKGAFNAE- 166 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcccccHH-
Confidence 556788888999999999888877654322 124567777777765 432100 000000000000
Q ss_pred HHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC------CHHHHHHHH
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------SAKALKLVG 424 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~ 424 (561)
-...++.|.++|..-+++.... +++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|
T Consensus 167 ----v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 167 ----VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 0011233444444444432221 34556677777777777777666554443322 134667778
Q ss_pred HHHhhhcCChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hHHHHHH
Q 008550 425 DVHASNASGREKAKKFYESALRL----EPGY--LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKL 491 (561)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~----~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l 491 (561)
.++.-. |+++.|+++|++.+.+ .... ....+.+|..|.-..++.+|+.++.+-+.+... -.+++.+
T Consensus 243 N~hifl-g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 243 NCHIFL-GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred hhhhhh-cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888777 8888888888776543 2222 345678889999889999999998887665431 2688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCc-cHHHHHHHHHHHHhccCCC
Q 008550 492 AQVFAATNMLQEALSHYEAALRI-----NSQ-NEAAKKGLERLEKQMKGVD 536 (561)
Q Consensus 492 a~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~l~~l~~~~~~~~ 536 (561)
|..+-.+|..++|+.+.++.+++ +|. ...+..++..+...+|..+
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 99999999999999888777665 232 3457778888887776433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-14 Score=118.85 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHH
Q 008550 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH-VIEGR--NGDAV 472 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~ 472 (561)
.++.++++..+++++..+|+++..|..+|.++... |++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~-g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR-NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 55667777777888888888888888888888777 8888888888888888888888888887764 56666 47788
Q ss_pred HHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 473 SLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 473 ~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
..++++++.+|++ .+++.+|..+...|++++|+.+|++++++.|.+..-...+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8888888888766 7778888888888888888888888888777655444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-12 Score=106.31 Aligned_cols=183 Identities=18% Similarity=0.160 Sum_probs=142.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 357 (561)
.|+....+.....+....|+.+-|..+++++....|.+..+....|..+.. |.+++|+++|+..+.-+|.+..++...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 344445555666677778888888888888888888888888888888877 8888888888888888888888887777
Q ss_pred HHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC--Ch
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GR 434 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~ 434 (561)
.+...+|+.-+|++.+...++..+.+ ++|..++.+|...|++++|.-++++++-..|.++..+..+|.+++..+| ++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 77778888888888888888887776 6788888888888888888888888888888888888888888777622 34
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 435 EKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
.-|.++|.++++++|.+..+++.+..+
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 668888888888888776666665444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-11 Score=132.83 Aligned_cols=340 Identities=12% Similarity=0.032 Sum_probs=244.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc----HHHHHHHHH
Q 008550 110 VKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF----IEAITALAE 183 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~ 183 (561)
.....+......|++..+...+..++.. ..++......+.++...|++++|...+.++....+.. ....
T Consensus 376 ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~----- 450 (903)
T PRK04841 376 ILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL----- 450 (903)
T ss_pred HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH-----
Confidence 4445666777788888888888776432 3445556677888888899999998888876543221 0000
Q ss_pred HcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 008550 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----HILLEMAKV 258 (561)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~ 258 (561)
........+.++...|++++|...+++++...|... .+...+|.+
T Consensus 451 ------------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 451 ------------------------------QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 011112347788889999999999999988544322 345678889
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--------CHHHHHHHH
Q 008550 259 DAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--------RPEVFVALS 324 (561)
Q Consensus 259 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~ 324 (561)
+...|++++|...+.+++...... ..++..++.++...|++++|...+++++..... ....+..+|
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998753321 235667889999999999999999988775221 123455677
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCC-----ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHH-----HHHH
Q 008550 325 VLWER-KDERGALSYAEKSIRIDER-----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSY-----QGLV 390 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-----~~l~ 390 (561)
.++.. |++++|...+.+++..... ....+..+|.++...|++++|...+.++....+.. ..+ ....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 77777 9999999999998875332 23456668899999999999999999987763321 111 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC------CCHHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAE 460 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~ 460 (561)
..+...|+.+.|...+.......+... ..+..++.++... |++++|...+++++.... ....++..+|.
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 445568899999998877554322222 1246788888888 999999999999987532 12346778999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
++...|+.++|...+.++++.....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-13 Score=133.53 Aligned_cols=263 Identities=12% Similarity=0.082 Sum_probs=166.4
Q ss_pred ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHH
Q 008550 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (561)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (561)
|.+..++..++..+...|++++|+..++..+...|+...+++.++-++...++...+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence 444455555555555555555555555555555555555555544444333332111100
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
..+.......++ .+++.+...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++..+|..+...
T Consensus 88 --~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 --NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 001222222344 5666666677778888889999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.++|+.++.+++.. +.. +++..+..++.+.+..+|.+.+.+..+-......-.+..+.
T Consensus 164 dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~------ 223 (906)
T PRK14720 164 DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV------ 223 (906)
T ss_pred hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH------
Confidence 999999999998875 444 88889999999999998887766544322221111111111
Q ss_pred HHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-------------------cCChHHH
Q 008550 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-------------------ASGREKA 437 (561)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------~~~~~~A 437 (561)
..+.-+-..|...+++++++.+++.+++.+|.+..+...++.+|... ...+..+
T Consensus 224 -------~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~ 296 (906)
T PRK14720 224 -------GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDC 296 (906)
T ss_pred -------HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHH
Confidence 12333444555556666666666666666666666666666665533 1344667
Q ss_pred HHHHHHHHHhCCCC
Q 008550 438 KKFYESALRLEPGY 451 (561)
Q Consensus 438 ~~~~~~a~~~~p~~ 451 (561)
+..|++-+..+|++
T Consensus 297 i~~fek~i~f~~G~ 310 (906)
T PRK14720 297 IADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHeeecCCC
Confidence 77777776666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-13 Score=111.82 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=84.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HH
Q 008550 308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS 385 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 385 (561)
.....+|.+..+ ..++..+.. |+-+.+..+..++...+|.+......+|...+..|++..|+..++++....|++ +.
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 333444444444 444444444 444445544444444444444444445555555555555555555555555444 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-. |+++.|..++..+....+.+..+..+++.+....
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 555555555555555555555555555555555555555555554 5555555555555544444455555555555555
Q ss_pred CChHHHHHHHH
Q 008550 466 GRNGDAVSLLE 476 (561)
Q Consensus 466 g~~~~A~~~~~ 476 (561)
|++++|.....
T Consensus 216 g~~~~A~~i~~ 226 (257)
T COG5010 216 GDFREAEDIAV 226 (257)
T ss_pred CChHHHHhhcc
Confidence 55555544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-13 Score=114.44 Aligned_cols=153 Identities=10% Similarity=0.099 Sum_probs=125.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+.+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 34667888899888655543221 2211 111266778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHH-Hh-cC--HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLW-ER-KD--ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
++|+..|++++...|+++.++..+|.++ .. |+ +++|...++++++.+|+++.++..+|..+...|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999864 55 66 58999999999999999999999999999999999999999999
Q ss_pred hHHhCCCh
Q 008550 376 AQELRPDL 383 (561)
Q Consensus 376 ~~~~~~~~ 383 (561)
+++..|..
T Consensus 170 aL~l~~~~ 177 (198)
T PRK10370 170 VLDLNSPR 177 (198)
T ss_pred HHhhCCCC
Confidence 99987765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-12 Score=109.95 Aligned_cols=281 Identities=14% Similarity=0.049 Sum_probs=215.8
Q ss_pred HHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHh
Q 008550 117 CHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF 195 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 195 (561)
.+++..+|.+|++++..- ...|++...+..+|.+|....++..|..+|++.-...|......
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr----------------- 81 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR----------------- 81 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH-----------------
Confidence 347888999999999884 55588888999999999999999999999999999998643332
Q ss_pred hccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
+..|..++..+.+.+|+.+...+.....-...+...-+-+.+..+++..+....++.
T Consensus 82 -----------------------lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 82 -----------------------LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred -----------------------HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc
Confidence 233889999999999999988775432222344555567777888888887776654
Q ss_pred HhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc----cCCC-
Q 008550 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----DERH- 349 (561)
Q Consensus 276 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~- 349 (561)
-. .+........|-+.++.|+++.|.+-|+.+++...-.|-+-+.++.+..+ +++..|+++....+.. .|..
T Consensus 139 p~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 139 PS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred cC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 21 24567888999999999999999999999999999999999999999999 9999999998877764 3321
Q ss_pred ------------------------hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh--H-HHHHHHHHHHhcCCHHHH
Q 008550 350 ------------------------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--R-SYQGLVHSYLQFSKVKEA 402 (561)
Q Consensus 350 ------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~~~~l~~~~~~~~~~~~A 402 (561)
.+++...+.++++.|+++.|.+.+....-..... + .+.+++.. -..+++.+.
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 1335667788899999999887776543222211 2 35565544 345667778
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
..-+.-.+.++|-.++.+.++-.++.+. .-++-|...+
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKN-eyf~lAADvL 333 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKN-EYFDLAADVL 333 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhh-HHHhHHHHHH
Confidence 8888888899998888898888888886 7777776654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-13 Score=110.34 Aligned_cols=178 Identities=14% Similarity=0.060 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344566666666778888888 888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHH
Q 008550 310 LSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ 387 (561)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 387 (561)
....|+++++|..+|.+|.+ |+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+ .+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 88888888888888888888 888888888888888888888888888888888888888888888887776644 5677
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 008550 388 GLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+++.+....|++++|..+..+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhhcCChHHHHhhccc
Confidence 888888888888888776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-13 Score=125.33 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=177.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
|........++..+...|-...|+..|++. ..|.....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334556667888888888888888888875 5566777888888888888888888887 6777888888887
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (561)
+... .-|++|.++.+.. +..+...+|......++|.++.++++..++++|-. ..|+.+|.+..+.+++..|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 7766 6666676666543 23456667777777888888888888888888876 66888888888888888888
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
+.|..++...|++..+|++++..|... ++..+|...++++++.+-.+..+|.+.-.+....|.+++|++.+.+.+...
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888 888888888888888887778888888888888888888888888877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=109.19 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=105.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
..+++++..+|++......+|..+... |++++|...+++++..+|.++.++..+|.++...|++++|...+++++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356778888888888888888888887 8888888888888888888888888888888888888888888888888888
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
++ ..++.+|.++...|++++|...|+++++++|++.........+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 76 7888888888888888888888888888888888766655555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-13 Score=118.38 Aligned_cols=258 Identities=17% Similarity=0.157 Sum_probs=172.8
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 008550 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (561)
Q Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 130 (561)
+.+|-.|+|..++..++ ....+ + ....+..+.+.++++.+|+++..+..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~---~---------------------------~~~~e~~~~~~Rs~iAlg~~~~vl~e 57 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS---P---------------------------ENKLERDFYQYRSYIALGQYDSVLSE 57 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST---C---------------------------HHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC---c---------------------------hhHHHHHHHHHHHHHHcCChhHHHHH
Confidence 45677899999987776 21211 1 02245778889999999999887766
Q ss_pred HhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCC
Q 008550 131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
+..-. +....+...++..+...++.+.++..++..+........
T Consensus 58 i~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~---------------------------------- 101 (290)
T PF04733_consen 58 IKKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESN---------------------------------- 101 (290)
T ss_dssp S-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CH----------------------------------
T ss_pred hccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccccc----------------------------------
Confidence 65433 333455566666665545566666655554433221001
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
.......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+..-.....+
T Consensus 102 ----~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~a 172 (290)
T PF04733_consen 102 ----EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEA 172 (290)
T ss_dssp ----HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 111223367777788888888877653 56788888888888888999888888888887776665555555
Q ss_pred HHHHhcC--CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh-
Q 008550 291 MLLKVKC--DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP- 366 (561)
Q Consensus 291 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 366 (561)
++....| .+.+|..+|+++....+.++.++..++.+... |++++|...+.+++..+|+++.++.+++.+....|+.
T Consensus 173 wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 173 WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 5665555 57888888888888877888888888888888 8888888888888888888888888888888888887
Q ss_pred hHHHHHHHHhHHhCCChH
Q 008550 367 EAAVIAFRGAQELRPDLR 384 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~ 384 (561)
+.+.+++.+....+|+++
T Consensus 253 ~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHCHHHTTTSH
T ss_pred hHHHHHHHHHHHhCCCCh
Confidence 455667777777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-13 Score=125.97 Aligned_cols=219 Identities=15% Similarity=0.073 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
......++..+...|-...|+.++++. ..|-....||.. |+..+|..+..+-++ .|.++..|..+|.+..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 345678899999999999999999864 567778889999 999999999999888 6677888888877766
Q ss_pred hcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
...-|++|.++.+..- ..+...+|......+++.++.+.++..++++|-....|+.+|.+..+. ++++.|.++|
T Consensus 469 d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHH
Confidence 5554555544443321 145566777778899999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
..++.++|++.++|.+++..|.+.|+-.+|...+.++++.+-.+ .+|.+...+....|.+++|++.|.+.+.+..
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998666 8999999999999999999999999988743
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=118.41 Aligned_cols=255 Identities=17% Similarity=0.153 Sum_probs=148.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
..+.++..|+|..++.-.+ ....+| ........+.+++..+|+++..+..... ..+....+...++..+...++.
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccch
Confidence 3677888899988887666 222333 2345667788888888888766654433 2233335555666655554555
Q ss_pred hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 300 SKLSKLVHDLLSIDP--SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.++..++..+.... .++.+....|.++.. |++++|++.+.+. .+.+.......+++..++++.|.+.++.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655443322 223344445555655 7777777766543 44566666666777777777777777776
Q ss_pred HHhCCChHH-HHHHHHHHHhcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH
Q 008550 377 QELRPDLRS-YQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (561)
Q Consensus 377 ~~~~~~~~~-~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 453 (561)
.+.+.+... ....+++....| .+.+|..+|++..+..|.++..++.++.++..+ |++++|...+.+++..+|++++
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHH
Confidence 655544421 222233333333 466777777776666666666666677777766 7777777777777766777777
Q ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCh
Q 008550 454 AALALAELHVIEGRN-GDAVSLLERYLKDWADD 485 (561)
Q Consensus 454 ~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~ 485 (561)
++.+++.+....|+. +.+.+++.++....|+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666676666666666 44445555555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=128.99 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
.+++.-+.......|.+++++..+|.+....|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34445555556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC
Q 008550 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (561)
..|+++..++.+|.++.. |++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999998544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=113.69 Aligned_cols=116 Identities=24% Similarity=0.225 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA 496 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~ 496 (561)
+-+..-|.-+.+. ++|.+|+..|.+|++++|+++..+.+.+.+|.++|.++.|++-++.++.++|.. .+|..+|.+|.
T Consensus 82 E~LK~eGN~~m~~-~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 82 ESLKNEGNKLMKN-KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3445567777776 999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccC
Q 008550 497 ATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKG 534 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~ 534 (561)
.+|++++|++.|+++|+++|+|...+.+|......+..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-12 Score=127.40 Aligned_cols=137 Identities=9% Similarity=-0.050 Sum_probs=69.6
Q ss_pred hcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHH
Q 008550 311 SIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG 388 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~ 388 (561)
...|.+++++..+|.+... |.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++...|++ .+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3344445555555555555 555555555555555555555555555555555555555555555555555554 33444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
+|.++...|++++|+..|++++..+|+++.++..+|.++... |+.++|...|+++++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh
Confidence 555555555555555555555554454555555555555554 55555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=114.37 Aligned_cols=285 Identities=14% Similarity=0.109 Sum_probs=148.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHH
Q 008550 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI 226 (561)
Q Consensus 147 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (561)
-|.-+++.|+....+.+|+.+++....+...+..+ | -.+|.+|+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAI---Y---------------------------------sQLGNAyf 66 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAI---Y---------------------------------SQLGNAYF 66 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHH---H---------------------------------HHhcchhh
Confidence 46666777788888888888877776655444332 1 11266777
Q ss_pred HccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHH
Q 008550 227 ASNDYKGGLELFAELLQ------RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP------YIMTYMDEYAMLLK 294 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~ 294 (561)
..++|.+|+++-.-=+. ..-.....--.+|..+-..|.|++|+.+..+-+.+.. ....+++++|.+|.
T Consensus 67 yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYh 146 (639)
T KOG1130|consen 67 YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYH 146 (639)
T ss_pred hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhh
Confidence 77777777766432221 1112234455677777778888888777766554422 12456777888777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCC------ChhHHHHHHHHHHhcCChhH
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 368 (561)
..|+.-....--+ ......++- ..++.|.++|..-+++... ...++-++|..|+-+|+|+.
T Consensus 147 akGk~~g~~~pee----~g~f~~ev~---------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 147 AKGKCTGLEAPEE----KGAFNAEVT---------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hcccccCCCChhh----cccccHHHH---------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 7665311100000 000000000 1222333333333222111 12344555666666666666
Q ss_pred HHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----C--CCHHHHHHHHHHHhhhcCChH
Q 008550 369 AVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAM----P--QSAKALKLVGDVHASNASGRE 435 (561)
Q Consensus 369 A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~~~~~~ 435 (561)
|+..-+.-+.+.... +++.++|.++.-.|+++.|+++|+..+.+. . ..+...+.+|..|.-. .+++
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll-~e~~ 292 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL-KEVQ 292 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH-HHHH
Confidence 665555544442221 345566666666666666666665544321 1 1234455566666655 6666
Q ss_pred HHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 436 KAKKFYESALRLEP------GYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 436 ~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
+|+.++.+-+.+.. ....+++.+|..+...|..++|+.+.++.++.
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666655444321 12345566666666666666666665555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=104.19 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=82.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 237 LFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.|++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|...+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChh
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP 351 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 351 (561)
+..++.+|.++.. |++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777766 7777777777777777666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-11 Score=105.78 Aligned_cols=200 Identities=12% Similarity=0.118 Sum_probs=143.5
Q ss_pred HHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccC
Q 008550 25 CFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSA 104 (561)
Q Consensus 25 ~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 104 (561)
..+++.|.......+...+..++..|..++..|+|++|+..|++++...|..+
T Consensus 14 ~~~lsgCs~~~~~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~--------------------------- 66 (243)
T PRK10866 14 SLFLAGCSGSKEEVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP--------------------------- 66 (243)
T ss_pred HHHHhhcCCCCcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---------------------------
Confidence 34566665433333445677899999999999999999999999999987554
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHHHHHhcC----CCcccchhHHHHHHHHHHhcC---------------C---hhhHHH
Q 008550 105 INENEVKYKIASCHFALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR---------------H---NRGAVA 162 (561)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~----~~~~~~~~~~~~l~~~~~~~~---------------~---~~~A~~ 162 (561)
-...+.+.+|.++.+.+++++|+..+++. +.+|..+.+++.+|.++...+ + ..+|+.
T Consensus 67 -~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 67 -YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 12346789999999999999999999883 444666778899998864443 1 357889
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
.|++.++..|++.-+....-.+....+ .....-+..|..|.+.|.|..|+.-++.++
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~-----------------------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKD-----------------------RLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999999987654432211110000 000012233777888888888888888888
Q ss_pred HhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 243 QRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 243 ~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
+..|+. .+++..++..|...|..++|.......
T Consensus 203 ~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 203 RDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 887765 567788888888888888887766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=108.53 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=99.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
+-..|.-++..++|.+|+..|.++++.+|.++..|..+|.+|.++|.++.|++.++.++.++|....+|.++|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44558888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
++.+|+..|+++++++|++...+..|..+-..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999998777776665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-12 Score=96.97 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
+..+.+|..+...|++++|...|+-+...+|.+...|+.+|.++..+ |++.+|+..|.+++.++|+++..++++|.|++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44666666666677777777777776667777777777777776666 77777777777777777766666666666666
Q ss_pred HcCChHHHHHHHHHHHhhC
Q 008550 464 IEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~ 482 (561)
..|+.+.|.+.|+.++...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.2e-12 Score=97.00 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
++..+..+.+|..+...|++++|...|+-+...+|.++..|+.+|.++.. |++.+|+..|.+++.++|+++..+++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555 55555555556665566666666666666
Q ss_pred HHHhcCChhHHHHHHHHhHHhC
Q 008550 359 LLLSMKRPEAAVIAFRGAQELR 380 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~ 380 (561)
+++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666655554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-10 Score=105.68 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=87.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
.|...+..|++++|+..++.++...|+|+..+...+.++...|+..+|.+.+++++..+|..+..+..+|..+.+.|++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
+|+..++..+..+|+++..|..++..|.. |+..++. ...+..+...|++++|+..+..+.+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666655 5543332 23444555556666666666555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-10 Score=102.31 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
|..+.+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++..+|+.+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 404 (561)
.+.. |++.+|+..++..+..+|+++..|..++..|..+|+..+|...+ +..+...|++++|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH----------------HHHHHhCCCHHHHHH
Confidence 8888 88888888888888888888888888888888888877765443 455667788888888
Q ss_pred HHHHHHHHC
Q 008550 405 AAREAMKAM 413 (561)
Q Consensus 405 ~~~~~~~~~ 413 (561)
.+..+.+..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 887777765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-11 Score=102.40 Aligned_cols=175 Identities=20% Similarity=0.275 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+.....++..|..++..|+|.+|+..|++++...|..+ -...+.+.+|.++.
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~----------------------------~a~~A~l~la~a~y 53 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP----------------------------YAPQAQLMLAYAYY 53 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST----------------------------THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh----------------------------HHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999987655 33568999999999
Q ss_pred hcCCHHHHHHHHhcC----CCcccchhHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCCcHHHHHH---H
Q 008550 120 ALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR-----------HNRGAVACYKECLRHCPFFIEAITA---L 181 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~----~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~---l 181 (561)
+.|+++.|+..++.+ +.+|..+.+++.+|.++.... ...+|+..|+..++..|++.-+-.. +
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 999999999998883 444566678899999876543 3458999999999999987654432 2
Q ss_pred HHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 008550 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKV 258 (561)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~ 258 (561)
..+.. .....-+..|..|++.|.+..|+..++.+++..|+.+ +++..++.+
T Consensus 134 ~~l~~--------------------------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 134 AELRN--------------------------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHH--------------------------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 21110 0011123347888888888888888888888888764 567778888
Q ss_pred HHHhCCHHHH
Q 008550 259 DAIIGKNDEA 268 (561)
Q Consensus 259 ~~~~~~~~~A 268 (561)
|..+|..+.|
T Consensus 188 y~~l~~~~~a 197 (203)
T PF13525_consen 188 YYKLGLKQAA 197 (203)
T ss_dssp HHHTT-HHHH
T ss_pred HHHhCChHHH
Confidence 8888877744
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-07 Score=92.74 Aligned_cols=427 Identities=15% Similarity=0.092 Sum_probs=263.8
Q ss_pred hhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHh
Q 008550 53 LFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEME 132 (561)
Q Consensus 53 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~ 132 (561)
....++|.+|.+...+.++..|+.+ -+....|..+.++|+.++|..+++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~-------------------------------~a~vLkaLsl~r~gk~~ea~~~Le 67 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL-------------------------------YAKVLKALSLFRLGKGDEALKLLE 67 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH-------------------------------HHHHHHHHHHHHhcCchhHHHHHh
Confidence 4678999999999999999987544 467778999999999999999999
Q ss_pred cCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCC
Q 008550 133 GIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211 (561)
Q Consensus 133 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (561)
.+... +.+...+-.+-.+|..+|++++|..+|++++..+|. .+....+-..+.+.+.+..-...+.+.....|...
T Consensus 68 ~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-- 144 (932)
T KOG2053|consen 68 ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-- 144 (932)
T ss_pred hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc--
Confidence 86444 567778888999999999999999999999999999 77777777777777776665555555554444321
Q ss_pred hhhHHHHHHHHHHHHHccCH---------HHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHhCCHHHHHHHHH-HHHhh-
Q 008550 212 SSRWLHRYVEAQCCIASNDY---------KGGLELFAELLQRF-PNN-IHILLEMAKVDAIIGKNDEAILNFE-KVRSI- 278 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~---------~~A~~~~~~~~~~~-~~~-~~~~~~la~~~~~~~~~~~A~~~~~-~~~~~- 278 (561)
-..|... ..+....... .-|...+++.++.. +-. ..=....-.++..+|.+++|...+. ...+.
T Consensus 145 yyfWsV~---Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 145 YYFWSVI---SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred chHHHHH---HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 1222211 1112122222 23555666666555 221 1112233456677899999999983 33333
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH----HH-HH--------HHh-cCHhHHHHHHHHHHh
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA----LS-VL--------WER-KDERGALSYAEKSIR 344 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----l~-~~--------~~~-~~~~~A~~~~~~~~~ 344 (561)
.+.+..........+...+++.+-.++..+++...+++...+.. +- .. +.. +..+..++..++.+.
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~ 301 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIG 301 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhc
Confidence 34444445566778889999999999999999999988222111 11 11 111 334444444455544
Q ss_pred ccCCCh-hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----H---------------------------------HH
Q 008550 345 IDERHI-PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----R---------------------------------SY 386 (561)
Q Consensus 345 ~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~---------------------------------~~ 386 (561)
.....+ -++..+-.-+...|+.+++...|-+-+-..|-. . .+
T Consensus 302 ~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 302 SKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred ccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 423333 223333333457799999887776654433311 0 01
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHH-----------CCCC---HHHHHHH-----HHHHhhhcCC---hHHHHH
Q 008550 387 QGLVHSYLQFSK-----VKEALYAAREAMKA-----------MPQS---AKALKLV-----GDVHASNASG---REKAKK 439 (561)
Q Consensus 387 ~~l~~~~~~~~~-----~~~A~~~~~~~~~~-----------~p~~---~~~~~~l-----~~~~~~~~~~---~~~A~~ 439 (561)
.....+....|. -+.-..+++++... .|.. ...+..+ -..+.+. ++ +-+|+-
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rkt-nd~~~l~eaI~ 460 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKT-NDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 111112222231 11222222222211 1111 2223222 2334443 44 467888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-ADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 440 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.++..+..+|.+...-..+..+|...|-+..|.+.|...--.+ ..+.+-+.+-..+...|++..+...+...++...+
T Consensus 461 LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 461 LLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998653222 22233334444555667777777777777666443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-09 Score=94.70 Aligned_cols=172 Identities=14% Similarity=0.035 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---HHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHIL---LEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEYA 290 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~ 290 (561)
..|..|...+..|++++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++ .+++.+|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 355668888888888888888888888888776544 7788888888888888888888888888774 4566666
Q ss_pred HHHHhcCC------------------HhHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCHhHHHHHHHHHHhccCCC
Q 008550 291 MLLKVKCD------------------YSKLSKLVHDLLSIDPSRPE---VFVALSVLWERKDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 291 ~~~~~~~~------------------~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~ 349 (561)
.++...+. ..+|+..|+++++..|++.- +...+..+.. .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~-------------------~l 174 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD-------------------RL 174 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------------------HH
Confidence 65433321 13445555555555555422 1111111100 00
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
..--+..|..|.+.|.+..|+.-++.+++..|+. +++..++.+|...|..++|.....
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1112345555666666666666666666665553 345556666666666666555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-11 Score=109.61 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=76.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
..|..++.. |++++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++.++|+. .+++.+|.++..+|+
T Consensus 7 ~~a~~a~~~-~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVD-DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345555555 677777777777777777777777777777777777777777777777776655 666777777777777
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 501 LQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 501 ~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+++|+..|+++++++|+++.+...+..+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777777777777776666555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=108.56 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=104.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
...|..++..|+|++|+..|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
+++|+..|++++.++|+++.+...++.+...
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998888877544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=94.00 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.++.+...+..++...+...+..+....+ +.+....+.+.+|..++..|+|++|+..|++++...|+..
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------ 82 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYP-----SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------ 82 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------
Confidence 45667777788889888887888877532 2345667899999999999999999999999999753211
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
-...+++.+|.+++..|++++|+..++.+...+..+.++..+|.++...|++++|+..
T Consensus 83 ----------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 83 ----------------------LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1145788999999999999999999999877777888999999999999999999999
Q ss_pred HHHHH
Q 008550 164 YKECL 168 (561)
Q Consensus 164 ~~~~l 168 (561)
|++++
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.8e-10 Score=93.99 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=48.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEYAM 291 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~ 291 (561)
.|..|...+..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|.++ .+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 4555777777777777777777777766654 46666777777777777777777777777766654 35555565
Q ss_pred HHHhc
Q 008550 292 LLKVK 296 (561)
Q Consensus 292 ~~~~~ 296 (561)
++...
T Consensus 88 ~~~~~ 92 (203)
T PF13525_consen 88 SYYKQ 92 (203)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-09 Score=87.30 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
.++..|..|-..|-+.-|.--|.+++.+.|+.|+++..+|..+.. |+++.|.+.|+..++++|....++.+.|..+.-.
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 344445555566666666666666666777777777777776666 7777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHhHHhCCChH
Q 008550 364 KRPEAAVIAFRGAQELRPDLR 384 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~ 384 (561)
|++.-|.+.+.+..+.+|+++
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred CchHhhHHHHHHHHhcCCCCh
Confidence 777777777777776666663
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-09 Score=92.04 Aligned_cols=293 Identities=18% Similarity=0.172 Sum_probs=221.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----hCCCC--hHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRS----IDPYI--MTYMDEY 289 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~--~~~~~~l 289 (561)
...|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.+++++.+---.+. ..... .+++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344888889999999999999988764433 34455567788889999888766443333 22221 3678889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh------hHHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRP-----EVFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMKG 357 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~l~ 357 (561)
+..+....++.+++.+.+..+......+ .+...++..+.. +.++++++.|+++++....+. .++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 9999999999999999888877654443 466778888888 999999999999998754332 5678899
Q ss_pred HHHHhcCChhHHHHHHHHhHHhCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------CCCHHHH
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKAL 420 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~ 420 (561)
.++....++++|.-+..++.++..+. -+.+.++..+...|....|.++.+++.++. +......
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999999999999988874321 146788999999999999999999987653 2335677
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHhhCCCh----
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRN-----GDAVSLLERYLKDWADD---- 485 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~-----~~A~~~~~~~~~~~~~~---- 485 (561)
..+|.+|... |+.+.|..-|+++...... ...++...+.++....-. -.|++.-+++++....-
T Consensus 250 ~~~aDIyR~~-gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 250 LCFADIYRSR-GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred HHHHHHHHhc-ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 8899999998 9999999999999865321 234566666666544333 34888888888765432
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 486 ---SLHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 486 ---~~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
..+..++.+|..+|.-++=...+.++-
T Consensus 329 ~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 329 SVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 678999999999988877777666653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=89.24 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVK 490 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 490 (561)
..++.+|..+... |++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++...|+. .++..
T Consensus 3 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKA-GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4566777777776 77788888887777777665 4567777888888888888888888887776653 56788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
+|.++...|++++|...++++++..|+++.+...+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 888888888888888888888888888777655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-09 Score=104.82 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=153.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc-cCCC----hhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-DERH----IPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
..+-|++.+..+|+..-.|........+ ++.++|.+..++++.. ++.. ..+|..+-++...-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3445556666666666666666665555 6777777777766642 2222 24455555555555655666677777
Q ss_pred hHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC--CHH
Q 008550 376 AQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG--YLG 453 (561)
Q Consensus 376 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~ 453 (561)
+.+.......|..|..+|...+++++|.++++..++.+.+....|..++..+..+ .+-+.|...+.+|++.-|. +.+
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHH
Confidence 7777666667777777888888888888888888877777777888888877776 6667777788888877776 566
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
.....|.+.++.|+.+.+..+|+..+...|.- ++|.-+.+.-.+.|+.+.++..|++++.+.-.-.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 67777778888888888888888877777766 7777777777788888888888888877654333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-07 Score=79.67 Aligned_cols=288 Identities=16% Similarity=0.097 Sum_probs=207.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcCC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKCD 298 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 298 (561)
|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-.-.|+++.|.+-|+.++.. |.. .-.+..+-.--...|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhccc
Confidence 667777788888888888877654433 445555677778889999999999887653 322 2223333334456788
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc---cCCCh---hHHHHHHHHH-HhcCChhHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI---DERHI---PGYIMKGNLL-LSMKRPEAAV 370 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~---~~~~~---~~~~~l~~~~-~~~~~~~~A~ 370 (561)
.+.|+.+-+.+....|.-+.++...-..... |+++.|++..+..... .++-. .+...-+... .-.-+...|.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 9999999999999988888777766655556 9999999988775543 22211 1111111111 2234577888
Q ss_pred HHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHH-HHHHHHHHHHhC
Q 008550 371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK-AKKFYESALRLE 448 (561)
Q Consensus 371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~-A~~~~~~a~~~~ 448 (561)
..-.++.++.|+. ++-..-+..+++.|+..++-.+++.+.+..|. +.++..+ ++.+. |+... =.+-.++...+.
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY--~~ar~-gdta~dRlkRa~~L~slk 325 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY--VRARS-GDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH--HHhcC-CCcHHHHHHHHHHHHhcC
Confidence 8888899999987 66777788999999999999999999988883 4443322 22333 44322 223344455678
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-NMLQEALSHYEAALRI 514 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 514 (561)
|++.+..+..+..-+.-|++..|..--+.+....|...++..++.+-... |+-.+...++-++++-
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888999999988776 9999999999999875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-07 Score=81.27 Aligned_cols=259 Identities=17% Similarity=0.129 Sum_probs=199.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++.++...-.|+++.|.+-|+.++. +|.. .-.+..+-.-....|..+.|..+-+++....|.-+.++...-...+..|
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 4457788888999999999998874 3321 1111222222346799999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhc---CCCCH---HHHHHHHHHHHh--cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 298 DYSKLSKLVHDLLSI---DPSRP---EVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~---~~~~~---~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
+++.|+++.+..... .++.. .+-..-+..... .+...|...-..+.++.|+...+-..-+..+++.|+..++
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 999999998766543 22221 122222333333 7788999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 370 VIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEA-LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
-.+++.+.+..|....+. ..++.+.|+.... ++-.++...+.|++.+.....+.....- |++..|..--+.+....
T Consensus 283 ~~ilE~aWK~ePHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda-~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 283 SKILETAWKAEPHPDIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA-GEFSAARAKAEAAAREA 359 (531)
T ss_pred hhHHHHHHhcCCChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc-cchHHHHHHHHHHhhhC
Confidence 999999999999875432 2233445543322 2334455668899999999999999987 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhC
Q 008550 449 PGYLGAALALAELHVIE-GRNGDAVSLLERYLKDW 482 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~ 482 (561)
|.. .++..++.+-... |+-.++..++-++++..
T Consensus 360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 875 6777888887766 99999999999998754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-08 Score=93.21 Aligned_cols=337 Identities=17% Similarity=0.100 Sum_probs=193.6
Q ss_pred HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhc
Q 008550 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ 197 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (561)
|...|+.+.|.+.++.|.. ..+|-.++....+..+.+-|..++-.+-. ......+-+
T Consensus 738 yvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~-----aRgaRAlR~-------------- 794 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKN-----ARGARALRR-------------- 794 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhh-----hhhHHHHHH--------------
Confidence 3456777888777766543 35777888888888887777766543311 000001100
Q ss_pred cccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008550 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
+. +.+.+ +. ..-|......|..++|..+|.+.-+. -.+-..|...|.+++|.+.-+.--+
T Consensus 795 a~----q~~~e--~e------akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR 854 (1416)
T KOG3617|consen 795 AQ----QNGEE--DE------AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR 854 (1416)
T ss_pred HH----hCCcc--hh------hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc
Confidence 00 00000 00 00155666778888888888877443 2455667777888887776654222
Q ss_pred hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHh-cCHhHHH
Q 008550 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL----------LSIDP----------SRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~----------~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
+. -...+++++..+...++.+.|+++|++. +.-+| .++..|...|..+.. |+.+.|+
T Consensus 855 iH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 855 IH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred ee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 11 1245677777777788888888877654 22233 235577788888888 9999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 008550 337 SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK----- 411 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 411 (561)
.+|..+-. |+.+..+.+-+|+.++|-.+-++. .+..+-+.+|+.|...|++.+|+.+|.++-.
T Consensus 933 ~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 933 SFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred HHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 98887642 344445555555555554443321 1223355556666666666666655554421
Q ss_pred -HCCCC--------------HHHHHHHHHHHhhhcCChHHHHHHHHHH------H-----------------HhCC-CCH
Q 008550 412 -AMPQS--------------AKALKLVGDVHASNASGREKAKKFYESA------L-----------------RLEP-GYL 452 (561)
Q Consensus 412 -~~p~~--------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a------~-----------------~~~p-~~~ 452 (561)
+...+ +.-....+..|....|....|+..|.++ + .++| .+|
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 11111 1111122233333322444444444332 1 1233 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH------hhC----------------C------Ch----HHHHHHHHHHHHcCC
Q 008550 453 GAALALAELHVIEGRNGDAVSLLERYL------KDW----------------A------DD----SLHVKLAQVFAATNM 500 (561)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~------~~~----------------~------~~----~~~~~la~~~~~~g~ 500 (561)
..+...+..+....+|++|..++-.+. .+. | +. .++..+|.++.++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 777778888888888888887654432 211 1 11 578899999999999
Q ss_pred HHHHHHHHHHH
Q 008550 501 LQEALSHYEAA 511 (561)
Q Consensus 501 ~~~A~~~~~~a 511 (561)
|..|.+-|.+|
T Consensus 1161 Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1161 YHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHHHhhh
Confidence 99999888876
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-09 Score=91.73 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLL 475 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 475 (561)
.+.-+.-++.-+..+|++++-|..+|.+|... |++..|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 44555666667777788888888888888777 78888888888888888888877777777766553 345677778
Q ss_pred HHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 476 ERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 476 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
++++..+|++ .+.+.+|..++..|++.+|...|+..++..|.+..-...+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 8888877777 77777788888888888888888888877766554433333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-09 Score=87.81 Aligned_cols=114 Identities=24% Similarity=0.238 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
.++.+|..+...|++++|+.+|++++...|+. ..++..+|.++... |++++|+..+.+++...|.+...+..+|.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 47788888888888888888888888776653 46788888888887 889999999999988888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 462 HVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+...|+...+...++.++. .+++|.+++++++..+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~-------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA-------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH-------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888777766655432 3688889999999999888
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-09 Score=85.95 Aligned_cols=118 Identities=25% Similarity=0.234 Sum_probs=97.3
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 008550 394 LQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGR 467 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~ 467 (561)
...++...+...++..+..+|+. ..+.+.+|.++... |++++|...|+.++...|+. +.+.+.++.++...|+
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 35788888888899999999988 56677889999988 99999999999999877654 3477889999999999
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 468 NGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
+++|+..++........+.++..+|.++...|++++|+..|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999997733222233788889999999999999999999874
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=92.26 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC---CHhHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC---DYSKLSKLV 306 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~ 306 (561)
..+.-+.-++.-+..+|+|++.|..+|.+|+..|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34455555555555566666666666666666666666666666666666666555555555544432 223444445
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC
Q 008550 307 HDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
++++..+|.+..+.+.+|..+.. |++.+|+..++.++...|.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55555544444444444444444 4444444444444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=84.00 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAML 292 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 292 (561)
+..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|+.++...|++ +.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 445777788888888888888888777765 4677778888888888888888888888877764 4667777888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+...|++++|...+++++...|+++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888777776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-07 Score=79.75 Aligned_cols=254 Identities=13% Similarity=0.165 Sum_probs=181.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
-.+-++..|+|..++..-.+..... ..+.....+.+.|..+|++...+......- .....+...++.....-++.+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 3667778899999888777664443 677888889999999998776554433321 122345555666666666655
Q ss_pred HHHHHHHHHHh-cCCCCHHHHH-HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 301 KLSKLVHDLLS-IDPSRPEVFV-ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 301 ~A~~~~~~~~~-~~~~~~~~~~-~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
+-+.-..+.+. .......++. .-+.++.. +++++|++..... .+.++...-..++.++.+++-|...++++.
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433 2222332444 44456677 9999999888763 345666666788889999999999999988
Q ss_pred HhCCChHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH
Q 008550 378 ELRPDLRSYQGLVHSYL----QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (561)
Q Consensus 378 ~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 453 (561)
+++.+. ....++..+. ..+++.+|.-+|++.-+..|..+......+.++..+ |++++|...++.++..++++++
T Consensus 165 ~ided~-tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 165 QIDEDA-TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred ccchHH-HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCHH
Confidence 776543 2334444443 345688999999999888888999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHHhhCCCh
Q 008550 454 AALALAELHVIEGRNGDAVS-LLERYLKDWADD 485 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~ 485 (561)
++.++..+-...|...++.. .+.+.....|..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999888888877654 445555555654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-08 Score=98.15 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSR----PEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
+..+.|++.+.-+|+..-.|..+.....+.++.++|.++.++++.. ++.. -.+|..+-++... |.-+...+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777753 2322 2355555555555 76667777777
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC--CH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SA 417 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~ 417 (561)
++.+.. +....+..+..+|...+.+++|.++++..++..... ..|...+..+++.++-+.|...+.++++.-|. +.
T Consensus 1522 RAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 777654 224567777788888888888888888888776644 56888888888888888888888888887776 66
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
......+.+-++. |+.+.+...|+..+...|...+.|.-+...-.+.|+.+.+..+|++++.+.-
T Consensus 1601 ~~IskfAqLEFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7777777777777 8888888888888888888888888888888888888888888888877653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=92.80 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=59.5
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-------HHH
Q 008550 389 LVHSYLQF-SKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY-------LGA 454 (561)
Q Consensus 389 l~~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~ 454 (561)
+|.+|... |++++|+++|+++++..... ...+..+|.++... |+|++|++.|++.....-++ ...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34455444 55555555555554432111 23344555555555 56666666665555432111 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCccH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFAA--TNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~ 519 (561)
++..+.|++..|++..|...+++....+|.- .+...+-.++.. ...+.+|+..|.+.-+++|-..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 3444555666666666666666666555421 233333333332 2346666666666555554333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-09 Score=95.17 Aligned_cols=183 Identities=21% Similarity=0.198 Sum_probs=118.1
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCC--C--h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRP--D--L---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLV 423 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~--~--~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l 423 (561)
|.+|...|++++|...|.++..... + . ..+...+.++.+. ++++|+.++++++...-.. ...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4455555555555555555544311 1 1 1234445554444 7777777777776643211 4566778
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPG--Y----LGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHV 489 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~ 489 (561)
|.++....|++++|+++|++++..... . ...+..+|.++...|+|++|++.|++......+. ..++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 888887447999999999999986321 2 3466789999999999999999999998754221 4667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhccCCCCCCC
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRINSQNEAA--KKGLERLEKQMKGVDPDAP 540 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~l~~~~~~~~~~~~ 540 (561)
..+.|+...|++..|...+++....+|..... ...+..|.......|.+..
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 78889999999999999999999999854332 3345555555544454443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-06 Score=79.21 Aligned_cols=222 Identities=25% Similarity=0.256 Sum_probs=141.8
Q ss_pred hCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh-cCHhHHH
Q 008550 262 IGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDYSKLSKLVHDLLS--IDPSRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
.+.+..+...+.......+.. .......+..+...+.+..+...+..... ..+.....+...+..... +++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666666665552 55666666677777777777777766665 556666666667766666 6777777
Q ss_pred HHHHHHHhccCCChhHHHHHHH-HHHhcCChhHHHHHHHHhHHhCCC--h--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 337 SYAEKSIRIDERHIPGYIMKGN-LLLSMKRPEAAVIAFRGAQELRPD--L--RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
..+..++...+.........+. ++...|+++.|...+.+++...|. . ..+...+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777666665444444444 667777777777777777665552 1 2344445556666677777777777777
Q ss_pred HCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 412 AMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 412 ~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
..+. ....+..++..+... +.+..|...+..++...|.....+..++..+...|.++.+...+.+.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKL-GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHc-ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666 566666666666665 66677777777776666664455555555555555566666666666666554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-08 Score=80.81 Aligned_cols=194 Identities=14% Similarity=0.062 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
...+|.+|..|-..|-..-|.--|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 33455667777777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 374 (561)
--|++.-|.+-+.+..+.+|++|---..+-..-..-++.+|..-+.+-.+...+....|...+ +.+|+..+ ...++
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~l~~ 220 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ETLME 220 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HHHHH
Confidence 888888888888888888888764322222222225566665544332222211122222211 11232221 12233
Q ss_pred HhHHhCCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 375 GAQELRPDL--------RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 375 ~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
++.....++ ++++.+|..+...|+.++|...|+-++..
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333222221 34666777777777777777777666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-06 Score=83.45 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH----------HhcCCCcHHHHHHHHH
Q 008550 114 IASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC----------LRHCPFFIEAITALAE 183 (561)
Q Consensus 114 ~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~p~~~~~~~~l~~ 183 (561)
+-..|...|.+++|.++.+.-. .-.-...++..+..+...++.+.|+.+|+++ +..+|...+-+...
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~D-RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~-- 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKD-RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR-- 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhcc-ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh--
Confidence 4566778899999998876421 1112346788888889999999999999876 23333332222211
Q ss_pred HcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------
Q 008550 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-------------------- 243 (561)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------- 243 (561)
.. ...-..|+ |..+-..|+.+.|+.+|..+-.
T Consensus 909 -----~~------------------d~~L~~WW-----gqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 909 -----KR------------------DESLYSWW-----GQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred -----cc------------------chHHHHHH-----HHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 00 01122344 5555667777777777776542
Q ss_pred -hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 244 -RFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 244 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
....+..+.+.+|+.|...|++.+|+.+|.++
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 12344556667777777777777777766655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-09 Score=92.13 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=73.4
Q ss_pred HHHHHHHHHH-hhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHH
Q 008550 418 KALKLVGDVH-ASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHV 489 (561)
Q Consensus 418 ~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 489 (561)
...+..+..+ ... |++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ ++++
T Consensus 143 ~~~Y~~A~~l~~~~-~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDK-SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4444444443 333 66666666666666666665 3566667777777777777777777776666653 6777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.+|.++..+|++++|+..|+++++..|++..+.....+|
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 777777777888888888888887777777766665554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=83.49 Aligned_cols=116 Identities=10% Similarity=0.019 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHH
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQ 493 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~ 493 (561)
+..+..+..|.-+... |++++|...|+-....+|.+++.+..||.++..+|++++|+..|..+..+.+++ ...+..|.
T Consensus 35 ~~le~iY~~Ay~~y~~-Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQ-GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 3344555555555555 666666666666666666666666666666666666666666666666555444 45566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 494 VFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 494 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|+..+|+.+.|+.+|+.++. .|.+......-..+...+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence 66666666666666666666 455555544443333333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=82.60 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
.+..+..|.-++..|++++|..+|+-+.-.+|.+++.|..+|.++.. ++|++|+..|..+..+.++++...+..|.|++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 34444455555555555555555555555555555555555555555 55555555555555555555555555555555
Q ss_pred hcCChhHHHHHHHHhHH
Q 008550 362 SMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~ 378 (561)
.+|+.+.|..+|..++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 55555555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-07 Score=82.65 Aligned_cols=302 Identities=14% Similarity=0.090 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHH
Q 008550 142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221 (561)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (561)
.-...-|.-++...++++|+..+.+.+..-.+...-+..++-+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l------------------------------------- 49 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCL------------------------------------- 49 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------------------
Confidence 3445566667778888888888888876544333322222111
Q ss_pred HHHHHHccCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-----HHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQ----RFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYMDEYA 290 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~ 290 (561)
..+....|.|++++..--..+. .... --+++..+++.+...-++.+++.+-...+.+....+ .....++
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 4445555666665544333322 1111 136677888888888888888888887776543332 4566788
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC----C------hhHH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDER----H------IPGY 353 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~----~------~~~~ 353 (561)
..+..++.++++++.|+.+++...++ -.++..+|.++.+ .|+++|+-+..++..+... + ..+.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 88888899999999999988764433 2478889999999 9999999998888775322 1 2456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCC--Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC------CHHHH
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRP--DL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------SAKAL 420 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~ 420 (561)
+.++..+...|+...|.++.+++.++.- .+ .....+|.+|...|+.+.|..-|+.+...... ...++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 7788899999999999999999877632 22 23567899999999999999999988764321 13444
Q ss_pred HHHHHHHhhhcCCh-----HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 421 KLVGDVHASNASGR-----EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 421 ~~l~~~~~~~~~~~-----~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
...+.++... .-. -.|++.-++++++...- ...+..++.+|...|.-++-...+..+-+.
T Consensus 290 ~g~Akc~~~~-r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 290 DGAAKCLETL-RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4555555443 222 34777777777654221 246678899999998877776666665443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.7e-10 Score=75.88 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN-MLQEALSHYEAALRINS 516 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 516 (561)
+.++..+|.++...|++++|+..|+++++.+|++ .+++.+|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444555555555555555555555555555544 45555555555555 45555555555555554
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=79.68 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHH
Q 008550 115 ASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACY 164 (561)
Q Consensus 115 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 164 (561)
.+-++-.|+|..++...+.....+......+.+.+.|..+|++...+...
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI 64 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI 64 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc
Confidence 34556679999999988886656677788888999999999876555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-06 Score=85.41 Aligned_cols=290 Identities=14% Similarity=0.046 Sum_probs=199.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
.-....+++.+|+....+.++..|+.+.+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+++.++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34456799999999999999999999999999999999999999999999888888888888899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH-hcCChh---------HHHH
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL-SMKRPE---------AAVI 371 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~---------~A~~ 371 (561)
..+|+++...+|. .+....+-.+|.+ +.|.+-.+.--+..+..|+.+..+.....+.+ .....+ -|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999999 7888888888888 88887666666666778887755444444433 333322 3445
Q ss_pred HHHHhHHhC-CCh-HH-HHHHHHHHHhcCCHHHHHHHH-HHHHHHCCCCHHHH-HHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 372 AFRGAQELR-PDL-RS-YQGLVHSYLQFSKVKEALYAA-REAMKAMPQSAKAL-KLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 372 ~~~~~~~~~-~~~-~~-~~~l~~~~~~~~~~~~A~~~~-~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
..++.++.. +-. .+ ....-.++..+|++++|..++ ....+..+..+..+ ...+..+... +++.+-.+...+++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l-~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL-NRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 555655555 211 22 333445677889999999999 44444544444444 4445555555 899999999999998
Q ss_pred hCCCCHHHHHH-HHHH------------HHHcCChHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 447 LEPGYLGAALA-LAEL------------HVIEGRNGDAVSLLERYLKDWA-DD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 447 ~~p~~~~~~~~-la~~------------~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.++++...+.. .-.+ +...+..+..++...+.+.... .+ -++..+-.-+...|+.+++...|-+-
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 88887222111 1111 1222334444444444444321 22 23333333345668888877666554
Q ss_pred Hhc
Q 008550 512 LRI 514 (561)
Q Consensus 512 l~~ 514 (561)
+..
T Consensus 335 fg~ 337 (932)
T KOG2053|consen 335 FGD 337 (932)
T ss_pred hCC
Confidence 433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-10 Score=75.92 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG-RNGDAVSLLERYLKDWA 483 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~ 483 (561)
++..|..+|.++... |++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666666666 66666666666666666666666666666666666 56666666666666655
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=79.33 Aligned_cols=94 Identities=24% Similarity=0.215 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
+.+|.++...|++++|+..+++++...|.++.++..+|.++... +++++|+.++++++...|.+..++..+|.++...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444 44444444444444444444444444444444444
Q ss_pred ChHHHHHHHHHHHhh
Q 008550 467 RNGDAVSLLERYLKD 481 (561)
Q Consensus 467 ~~~~A~~~~~~~~~~ 481 (561)
++++|...+.++++.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 444444444444433
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-07 Score=81.92 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-HhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---------
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELL-QRFPN--------NIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------- 278 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------- 278 (561)
..++++..++..|++.+|.+.+...- ...|. .-..|..+|.++++.|.|.-+..+|.++++.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 44556777777777777777665432 11222 1123456777777777777777777777741
Q ss_pred CC---------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 279 DP---------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 279 ~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
.| ...+.+++.|..+...|++-.|.++|.++...+..+|..|..++.+..
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 124566777777777777777777777777777777777777777664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-09 Score=85.90 Aligned_cols=100 Identities=22% Similarity=0.100 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKK 439 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~ 439 (561)
+..+...+...++..+.. ..++.+|.++...|++++|+..|++++...|+. +.++..+|.++... |++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHH
Confidence 444444444443333333 346777777777788888888888887776553 34777788888877 88888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 440 FYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 440 ~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
.+++++.+.|.....+..+|.++...|
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 888888888877777777777776444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=84.86 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (561)
.....++.+|..+...|++++|+.+|++++...|+. .++..+|.++...|++++|+..+++++...|+++..+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344566777777777788888888887777765542 3577888888888888888888888888888888888888
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
|.++... |+...+...+..++. .+.+|++++++++...|++
T Consensus 113 g~~~~~~-g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKR-GEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHc-CChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888776 776655554444432 2456666666666666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-10 Score=79.52 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=66.9
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
+|+++.|+..+++++...|. +...++.+|.+++..|++++|+..+++ .+.+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58889999999999988885 456677789999999999999999988 778888888888889999999999999988
Q ss_pred HHHH
Q 008550 306 VHDL 309 (561)
Q Consensus 306 ~~~~ 309 (561)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=74.36 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=46.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
.|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 377777777777777777777777777777777777777777777777777777777777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-07 Score=79.80 Aligned_cols=222 Identities=27% Similarity=0.314 Sum_probs=193.1
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRS--IDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.+.+..+...+.......+. ........+..+...+.+..+...+..... ..+.....+...+......+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46777888888888887776 378888999999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH-HHHh-cCHhHHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 304 KLVHDLLSIDPSRPEVFVALSV-LWER-KDERGALSYAEKSIRIDE---RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
..+..+....+.........+. ++.. |+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877665666665 6777 999999999999988776 3456666777778889999999999999999
Q ss_pred hCCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 379 LRPD-L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 379 ~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
..+. . ..+..++..+...++++.|...+..++...|.....+...+..+... +.++.+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL-GRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc-CCHHHHHHHHHHHHHhCcc
Confidence 9888 3 66889999999999999999999999999998788888888888844 8899999999999999987
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-09 Score=93.27 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
...|..+++.|+|..|...|++++..-+. ..++.+++.++.++++|.+|+..+.+++...|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34566677777777777777776654221 12477888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-VSLLERYLKD 481 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~ 481 (561)
.+++..|.++... |+++.|+..|++++++.|.|..+...+..+..+..++.+. .+.|.+++..
T Consensus 292 KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888887 8888888888888888888888877777776665555443 5556555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=78.40 Aligned_cols=79 Identities=29% Similarity=0.397 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 008550 432 SGREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
|+++.|+..++++++..|. +...++.+|.++++.|++++|+.++++ .+..+.+ ..++.+|.++..+|++++|++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6777777777777777774 344566677777777777777777777 5555555 66667777888888888887777
Q ss_pred HHH
Q 008550 509 EAA 511 (561)
Q Consensus 509 ~~a 511 (561)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-09 Score=77.78 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=67.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
.|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+...+..++.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 36666777777777777777777777776777777777777777777777777777777777667777777777777777
Q ss_pred HHHHHHHHHHhcCC
Q 008550 301 KLSKLVHDLLSIDP 314 (561)
Q Consensus 301 ~A~~~~~~~~~~~~ 314 (561)
.|...+.+++...|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77777777666555
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=73.32 Aligned_cols=63 Identities=29% Similarity=0.384 Sum_probs=47.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
.+|..+...|++++|+..|+++++..|++ .+++.+|.++...|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46777777788888888888887777776 7778888888888888888888888888887765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-08 Score=89.51 Aligned_cols=156 Identities=8% Similarity=0.044 Sum_probs=86.3
Q ss_pred HHHHHHHHHccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCCh
Q 008550 219 YVEAQCCIASND---YKGGLELFAELL---QRFPNNIHILLEMAKVDAII---------GKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 219 ~~~a~~~~~~~~---~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~ 283 (561)
++.|...+..+. ...|+.+|.+++ ..+|+...++..++.+++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 455555544433 345666677777 66666666666666666543 123345555556666666666
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHH-HH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL-LL 361 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~ 361 (561)
.++..+|.++...++++.|...|+++..++|+.+.+|+..|.+... |+.++|+..++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666655555 666666666666666655544333222222 22
Q ss_pred hcCChhHHHHHHH
Q 008550 362 SMKRPEAAVIAFR 374 (561)
Q Consensus 362 ~~~~~~~A~~~~~ 374 (561)
-....+.|+..|-
T Consensus 419 ~~~~~~~~~~~~~ 431 (458)
T PRK11906 419 VPNPLKNNIKLYY 431 (458)
T ss_pred cCCchhhhHHHHh
Confidence 3334444544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=84.41 Aligned_cols=100 Identities=10% Similarity=0.135 Sum_probs=78.4
Q ss_pred cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcCCHhHHH
Q 008550 229 NDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 303 (561)
+.|..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 45666666776665555544 5677888888888899999999999998876653 357888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 304 KLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
..+++++...|.....+..+|.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 8888888888888888888877776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=97.81 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=96.5
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc-------CChHHHHHHHHHHHHh--CCCCHHH
Q 008550 387 QGLVHSYLQFS---KVKEALYAAREAMKAMPQSAKALKLVGDVHASNA-------SGREKAKKFYESALRL--EPGYLGA 454 (561)
Q Consensus 387 ~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-------~~~~~A~~~~~~a~~~--~p~~~~~ 454 (561)
+..|..+...+ ....|+.+|+++++.+|+++.++..++.++.... .+...+.....+++.+ +|.++.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 33444444333 3667777777777777777777777666654430 1223455555555553 6667778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
+..+|..+...|++++|...+++++.++|+...|..+|.++...|++++|.+.|++|+.++|.++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 888888888888888888888888888887688888888888888888888888888888888774
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-05 Score=72.77 Aligned_cols=416 Identities=11% Similarity=0.031 Sum_probs=253.7
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+....+|+.+-+-+-.+ -+++....|++.+...|..|. ++.......+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r-------------------------------~W~~yi~~El 64 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR-------------------------------AWKLYIEREL 64 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH-------------------------------HHHHHHHHHH
Confidence 34456788877777666 889999999999988876664 4555666777
Q ss_pred hcCCHHHHHHHHhcCCCcccchhHHHH-HHHHHHhcCChhhHHHHHHHHH-------hcCCCcHHHHHHHHHHcCCcccH
Q 008550 120 ALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYRNSRHNRGAVACYKECL-------RHCPFFIEAITALAELGATPKDI 191 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~l-------~~~p~~~~~~~~l~~~~~~~~~~ 191 (561)
..++|+....+|.+.....-+.+.|.. +-.+-...|+...+....-++. ..++.+...|...+........
T Consensus 65 ~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea- 143 (656)
T KOG1914|consen 65 ASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA- 143 (656)
T ss_pred HhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccc-
Confidence 788888888888774444444666643 3444444555544333333332 2344444455444322111100
Q ss_pred hHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHH-----------HHH--
Q 008550 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLE-----------MAK-- 257 (561)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----------la~-- 257 (561)
-..+..+.+.+...+.|++++..--.+.+ .|.. .|.
T Consensus 144 ------------------------------~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~ 193 (656)
T KOG1914|consen 144 ------------------------------VGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKF 193 (656)
T ss_pred ------------------------------cccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122334667777777777754333321 1111 111
Q ss_pred HHHHhCCHHHHHHHHHHHHhh-------CCC----C-------hHHHHHHHHHHHhcC------C--HhHHHHHHHHHHh
Q 008550 258 VDAIIGKNDEAILNFEKVRSI-------DPY----I-------MTYMDEYAMLLKVKC------D--YSKLSKLVHDLLS 311 (561)
Q Consensus 258 ~~~~~~~~~~A~~~~~~~~~~-------~~~----~-------~~~~~~l~~~~~~~~------~--~~~A~~~~~~~~~ 311 (561)
+-.....|..|...++....+ +|. . .+.|.++...-...+ . .....-.+++++.
T Consensus 194 i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll 273 (656)
T KOG1914|consen 194 IGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLL 273 (656)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHH
Confidence 111223355555555544332 111 1 112322222111111 1 1223345677777
Q ss_pred cCCCCHHHHHHHHHHHHh-cC--------------HhHHHHHHHHHHhccC-CChhHHHHHHHHHHhcC---ChhHHHHH
Q 008550 312 IDPSRPEVFVALSVLWER-KD--------------ERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMK---RPEAAVIA 372 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~--------------~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~A~~~ 372 (561)
..+..+++|+..+..+.. ++ -+++..+|++++..-- .+...++.++..-...- .++.....
T Consensus 274 ~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~ 353 (656)
T KOG1914|consen 274 YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEI 353 (656)
T ss_pred HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHH
Confidence 788889998887776665 55 6688888888876432 23333444443322222 35666677
Q ss_pred HHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 373 FRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 373 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
+++++...... -+|..+...-.+..-...|..+|.++-+.......++..-|.+-....++..-|...|+-.++..++
T Consensus 354 ~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d 433 (656)
T KOG1914|consen 354 YNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD 433 (656)
T ss_pred HHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Confidence 77777664333 2355555555666667888888888876544333444444444333349999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKD--WADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+.........+...++-..|..+|++++.. .++. ++|-.+-..-..-|+...+++.=++-....|.+
T Consensus 434 ~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 434 SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999987 3333 789888888899999999998888877777733
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-08 Score=96.21 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=112.6
Q ss_pred HHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC--------CHhHHHHHHHH
Q 008550 242 LQRFPNNIHIL--LEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC--------DYSKLSKLVHD 308 (561)
Q Consensus 242 ~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~ 308 (561)
....|.++.+| +..|.-+...++ ...|+.+|+++++.+|++..++..++.++.... +...+.....+
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35566666554 445666655544 778899999999999999888888777665432 23455666666
Q ss_pred HHhc--CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH
Q 008550 309 LLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385 (561)
Q Consensus 309 ~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (561)
++.. .|.++.++..+|..... |++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|..+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5553 67778888888888877 999999999999999999 4789999999999999999999999999999999865
Q ss_pred H
Q 008550 386 Y 386 (561)
Q Consensus 386 ~ 386 (561)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-07 Score=78.47 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
...+..++..|...++.|+|++|+..|+.+....|..| -...+.+.++.++.
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----------------------------~~~qa~l~l~yA~Y 82 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----------------------------YSEQAQLDLAYAYY 82 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------------------------ccHHHHHHHHHHHH
Confidence 34577899999999999999999999999999887655 22568899999999
Q ss_pred hcCCHHHHHHHHhc-C---CCcccchhHHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 120 ALGETKAAIVEMEG-I---PSKARNLQMSLLMAKLYRNSR--------HNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 120 ~~~~~~~A~~~l~~-~---~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
+.++++.|+..+++ + +.+|+-.-++++.|.+++..= -..+|+..|+.++...|++.-+......+-..
T Consensus 83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~ 162 (254)
T COG4105 83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL 162 (254)
T ss_pred hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 99999999998887 3 344555567788888876422 24578889999999999876544332221100
Q ss_pred cccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCC
Q 008550 188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGK 264 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~ 264 (561)
.... .-.-+.-|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-
T Consensus 163 ~d~L-----------------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 163 NDAL-----------------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 0000 0001122777778888888888888888776654 4566677777777777
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 008550 265 NDEAILNFEKVRSIDPYI 282 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~ 282 (561)
.++|...-.-+-...|++
T Consensus 220 ~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 220 TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 777766555444444444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=87.93 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=86.2
Q ss_pred HHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 008550 219 YVEAQCC-IASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAM 291 (561)
Q Consensus 219 ~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 291 (561)
|..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4446665 55789999999999999999987 5799999999999999999999999999887775 678888899
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
++...|++++|...|+++++.+|++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999988887654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=89.56 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=106.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFP----NN-----------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~----~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
.|..+++.|+|..|...|++++..-+ .+ ..++.+++.|+.++++|..|+..+.+++..+|.|..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 48899999999999999999887532 11 3567888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh-HHHHHHHHHHhccC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIRIDE 347 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~~~~ 347 (561)
+++.|.++...|+++.|+..|+++++..|.+..+...+..+... ..+. +..+.|.+++...+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998888888888777 4444 56778888776543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-07 Score=77.00 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
+|..|...++.|++++|+..|+.+....|.+ ..+...++.++++.+++++|+...++.+.+.|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 4444555556666666666666655555543 34555555556666666666666666666555554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-07 Score=72.86 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=115.3
Q ss_pred HHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK-AMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
..+.=+++.......+.+...|.....+.++......|++.+|...|++++. .+.+++..+..++...+.. +++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHH
Confidence 3344455555666666666677776777888888888888888888888775 5667788888888888887 8888888
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 439 KFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 439 ~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
..+++..+.+|. .++....+|.++...|++.+|...|+.++...|........+..+.++|+..+|..-+..+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 888888887764 4667778888888888888888888888888888877788888888888777766555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-10 Score=96.01 Aligned_cols=230 Identities=9% Similarity=0.057 Sum_probs=168.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
+|..|+.+|.|++|+.+|.+.+..+|.|+..+...|.+|++..++..|...+..++.++.....+|...+..-..+|+..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHH---------HHHHHHHHhcCChhHHHH
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGY---------IMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~A~~ 371 (561)
+|.+-++.++.+.|++.+....++.+-.. .+ -+-+.+..|....+. ...|..+...|.++.++.
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl---~E----~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARINSL---RE----RKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHhcch---Hh----hhHHhhcCCCCCccccchhhhccccCcchhhhhhhcccccee
Confidence 99999999999999987766555544321 11 011122222222111 223566677788888888
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
++.+-+....++..+..-+..+.+.-+++.++....+.+...|.........+.+-.-. |...++...++.++.+.|.+
T Consensus 256 ~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~-~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 256 DVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIA-KTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred EeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHH-hhhhhcCcchhheeeecccc
Confidence 87776655444322222256666777788888777777766666555444444444444 67777888888888888876
Q ss_pred HHHHHHH
Q 008550 452 LGAALAL 458 (561)
Q Consensus 452 ~~~~~~l 458 (561)
......+
T Consensus 335 ~~~~~~~ 341 (536)
T KOG4648|consen 335 ETPKETE 341 (536)
T ss_pred ccchhhh
Confidence 5444333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.5e-08 Score=88.30 Aligned_cols=171 Identities=13% Similarity=0.073 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcCC---hhhHHHHHHHHH---hcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 143 MSLLMAKLYRNSRH---NRGAVACYKECL---RHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 143 ~~~~l~~~~~~~~~---~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
..+..|......+. .+.|..+|.+++ ..+|+...++-.++.++...
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~---------------------------- 308 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL---------------------------- 308 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH----------------------------
Confidence 33677777766554 568999999999 99999999998887664311
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
...|..- ......+|.+..+++++.+|.|+.++..+|.+....++++.|...|++++.++|+...+++..|.+....
T Consensus 309 --~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 309 --ALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN 385 (458)
T ss_pred --HHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence 0111111 3356678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHH--HHHHHHhcCHhHHHHHHHHHHh
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVA--LSVLWERKDERGALSYAEKSIR 344 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~A~~~~~~~~~ 344 (561)
|+.++|...++++++++|....+-.. ....|.....++|+..|-+-.+
T Consensus 386 G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 386 EKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999999999999999987543332 2224555788888888866443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-05 Score=70.50 Aligned_cols=392 Identities=13% Similarity=0.046 Sum_probs=215.4
Q ss_pred CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChh
Q 008550 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS 213 (561)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (561)
+..+|.+...|+.|.+-+..+ -+++....|++.+...|..+.+|...++.....++++..-..+.+-... ...-.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk----vLnlD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK----VLNLD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HhhHh
Confidence 556688888888887777666 7888888888888888888888776654444443332221111100000 01122
Q ss_pred hHHHHHHHHHHHHHccCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHh
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLE----LFAELLQR---FPNNIHILLEMAKVDA---------IIGKNDEAILNFEKVRS 277 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~~~~ 277 (561)
.|..++ ..+-...|+...+.. .|+-++.. ++.+..+|...+..+. ...+.+.....|++++.
T Consensus 88 LW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 88 LWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 222221 112222333333332 23333332 3444455555444332 22244555666666666
Q ss_pred hCCCCh-HHHHHHHHHHH-------------hcCCHhHHHHHHHHHHhc-------CCC----C-------HHHHHHHHH
Q 008550 278 IDPYIM-TYMDEYAMLLK-------------VKCDYSKLSKLVHDLLSI-------DPS----R-------PEVFVALSV 325 (561)
Q Consensus 278 ~~~~~~-~~~~~l~~~~~-------------~~~~~~~A~~~~~~~~~~-------~~~----~-------~~~~~~l~~ 325 (561)
..-.+. ..|..+-..-. ....|..|...+++.... .|. . .+.|.++..
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 543443 23333322111 122344455544444321 111 0 112333322
Q ss_pred HHHh-------cCH--hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC--------------hhHHHHHHHHhHHhCCC
Q 008550 326 LWER-------KDE--RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR--------------PEAAVIAFRGAQELRPD 382 (561)
Q Consensus 326 ~~~~-------~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~ 382 (561)
.-.. |.. ..-.-.+++++..-+..+++|+..+..+...++ .+++..+|++++.....
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 2111 111 123344566666667777777766555555554 56777888887765333
Q ss_pred h--HHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHH
Q 008550 383 L--RSYQGLVHSYLQFS---KVKEALYAAREAMKAMPQSA-KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 383 ~--~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
. ..++.++..-...- +.+.....+++++.....++ -++..+-....+. .....|...|.++-+..-..-.++.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhH
Confidence 2 22444444332222 36667777888776544333 3445555555555 6788999999998765433334444
Q ss_pred HHHHH-HHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-cHHHHHHHHHHHHh
Q 008550 457 ALAEL-HVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI--NSQ-NEAAKKGLERLEKQ 531 (561)
Q Consensus 457 ~la~~-~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~l~~~ 531 (561)
.-|.+ |...++..-|..+|+-.++..+++ ..-......+..+|+-..|...|++++.. .|+ ...+|..+......
T Consensus 405 a~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 405 AAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 44433 456799999999999999999987 56677788889999999999999999987 433 34566665555554
Q ss_pred cc
Q 008550 532 MK 533 (561)
Q Consensus 532 ~~ 533 (561)
.|
T Consensus 485 vG 486 (656)
T KOG1914|consen 485 VG 486 (656)
T ss_pred cc
Confidence 44
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-05 Score=69.56 Aligned_cols=436 Identities=14% Similarity=0.088 Sum_probs=266.5
Q ss_pred HHHHHHHHHHhhhch--hHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh
Q 008550 43 AENLIILGDSLFRDR--EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 120 (561)
+.++.-+|+.+-.+| +...++++++..+...|.+. -+...++.+|..++.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~----------------------------veart~LqLg~lL~~ 58 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL----------------------------VEARTHLQLGALLLR 58 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH----------------------------HHHHHHHHHHHHHHH
Confidence 446677788888888 99999999999887753211 123356677776654
Q ss_pred -cCCHHHHHHHHhcC----CCcccc----hhHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCcHH----HHHHHHHHcC
Q 008550 121 -LGETKAAIVEMEGI----PSKARN----LQMSLLMAKLYRNSR-HNRGAVACYKECLRHCPFFIE----AITALAELGA 186 (561)
Q Consensus 121 -~~~~~~A~~~l~~~----~~~~~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~ 186 (561)
..+++.|...+++. ...|.. ..+...++.+|.... .+..|...++++++.....+. ....|+++..
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 67888888888862 122332 345678899998877 789999999999988765553 3456778888
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHH---HHHHHhCCCCHH-------HHHHHH
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELF---AELLQRFPNNIH-------ILLEMA 256 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~---~~~~~~~~~~~~-------~~~~la 256 (561)
..+++..+.+.+..-..............+.....+.+.....+..+...+. .++.+....|+. .+..+-
T Consensus 139 idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lq 218 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQ 218 (629)
T ss_pred hhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 8888888877654333322222111222222333455555555555544444 444444333321 122222
Q ss_pred H-HHHHhCCHHHHHHHHHH---HHhh-CCCC------------h-----------HHHHHHHHH--HHhcCCHhHHHHHH
Q 008550 257 K-VDAIIGKNDEAILNFEK---VRSI-DPYI------------M-----------TYMDEYAML--LKVKCDYSKLSKLV 306 (561)
Q Consensus 257 ~-~~~~~~~~~~A~~~~~~---~~~~-~~~~------------~-----------~~~~~l~~~--~~~~~~~~~A~~~~ 306 (561)
. .|...|+...+...+++ .++. .+.+ + .++..+..+ -...|-+++|.++-
T Consensus 219 l~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~t 298 (629)
T KOG2300|consen 219 LSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYT 298 (629)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHH
Confidence 2 23445666655555443 3332 1210 0 011111111 12456677777777
Q ss_pred HHHHhcCCC------CHHH--------HHHHHHHHHh-cCHhHHHHHHHHHHhc---cCC-------ChhHHHHHHHHHH
Q 008550 307 HDLLSIDPS------RPEV--------FVALSVLWER-KDERGALSYAEKSIRI---DER-------HIPGYIMKGNLLL 361 (561)
Q Consensus 307 ~~~~~~~~~------~~~~--------~~~l~~~~~~-~~~~~A~~~~~~~~~~---~~~-------~~~~~~~l~~~~~ 361 (561)
++++..... ...+ +-.+..+-.- |++.+|++....+... .|. .+.++..+|....
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 777654211 1111 2222333333 9999988887776654 333 2345677888888
Q ss_pred hcCChhHHHHHHHHhHHhCCCh--HH--HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPDL--RS--YQGLVHSYLQFSKVKEALYAAREAMKAMPQS----------AKALKLVGDVH 427 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------~~~~~~l~~~~ 427 (561)
..+.++.|...|..+.+..... .+ -.+++.+|.+.|+-+.-.+.++ .+.|.+ ..+++..|...
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 8899999999999998876554 22 4578999999887654444333 344443 45667777777
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCh--H--HHHHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADD--S--LHVKLAQV 494 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~--~--~~~~la~~ 494 (561)
+.+ +++.+|...+.+.++..... .-.+..++.+....|+..++......++... |+. . ....+-.+
T Consensus 456 f~q-n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L 534 (629)
T KOG2300|consen 456 FKQ-NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDL 534 (629)
T ss_pred HHh-ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHH
Confidence 787 99999999999998875211 2245667888899999999999888887765 333 2 33456677
Q ss_pred HHHcCC--HHHHHHHHHH
Q 008550 495 FAATNM--LQEALSHYEA 510 (561)
Q Consensus 495 ~~~~g~--~~~A~~~~~~ 510 (561)
+...|+ .+...+.|.+
T Consensus 535 ~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 535 YQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHhCcchhhHHHHHHHH
Confidence 777787 5555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-08 Score=90.35 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 468 (561)
+...+...++++.|+..+++..+.+|+ +...++.++... ++..+|+..+.+++...|.+...+...+..+...|++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 344455566777777777777766653 445567776666 6777777777777777777777777777777777888
Q ss_pred HHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 469 GDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
+.|+++.+++++..|++ ..|+.|+.+|...|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88888888888777777 77888888888888888887666644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-08 Score=88.95 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=59.1
Q ss_pred hcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
..++++.|+..+++..+.+|+. ...++.++...++..+|++.+.+++...|.+...+...+..+... ++++.|+.+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 3444555555555554444432 223444554555555555555555555555555555555555554 5555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008550 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (561)
++++...|.+...|..|+.+|...|+++.|+..++
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555555555555555555555555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.1e-08 Score=81.70 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=94.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAM 291 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 291 (561)
.|..|..++..|+|..|...|...++..|++ +.+++.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5677899999999999999999999999976 6899999999999999999999999999987776 588999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (561)
+...+|+.++|...++++++.+|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999988766543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.1e-08 Score=82.00 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHH
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLA 492 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la 492 (561)
.+..+.-+... |+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +.++.+|
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 44444444554 66666666666666666654 4567777777777777777777777777766654 6778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.+...+|+.++|...|+++++..|+.+.+......+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 888888888888888888888888877776665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=70.42 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=47.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666655543
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=71.78 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC---CHHHHHHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---SAKALKLV 423 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l 423 (561)
.+++.+|.++-..|+.++|+..|++++....+. .++..+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 355666667777777777777777776654332 34666677777777777777777777666666 55566666
Q ss_pred HHHHhhhcCChHHHHHHHHHHHH
Q 008550 424 GDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
+.++... |+.++|+..+-.++.
T Consensus 82 Al~L~~~-gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNL-GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHH
Confidence 6666665 667766666665553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00012 Score=69.68 Aligned_cols=359 Identities=13% Similarity=0.022 Sum_probs=231.3
Q ss_pred CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhh
Q 008550 135 PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSR 214 (561)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (561)
..-|.....|-..|..-.+.|..+.++.+|++++.--|.+...|..+.
T Consensus 73 ~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~-------------------------------- 120 (577)
T KOG1258|consen 73 SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL-------------------------------- 120 (577)
T ss_pred hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH--------------------------------
Confidence 344666666677777777777777777777777777776666665442
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+.+--..|+...-...|+++......+ ...|-..-..-..++++..-...|++.++..-.....++..-.
T Consensus 121 -------~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 121 -------AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFK 193 (577)
T ss_pred -------HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHH
Confidence 223335677777777777777765433 3455555555566777888888888877764333222222211
Q ss_pred HHHh------cCCHhHHHHHHHHHHhc--CCCC---HH------------------HHHHHHH-------HHHh-cCHhH
Q 008550 292 LLKV------KCDYSKLSKLVHDLLSI--DPSR---PE------------------VFVALSV-------LWER-KDERG 334 (561)
Q Consensus 292 ~~~~------~~~~~~A~~~~~~~~~~--~~~~---~~------------------~~~~l~~-------~~~~-~~~~~ 334 (561)
-+.. ....+++...-...... .+.. .+ ....+.. ++.. .....
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 1111 22334444444443321 0000 00 0001110 0111 11222
Q ss_pred HHHHHHHHHhc-----cCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHH
Q 008550 335 ALSYAEKSIRI-----DER---HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 335 A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
.+..++..++. .|- ....|......-...|+++...-.|++++-..... ..|...+......|+.+-|...
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 22233333321 122 22456667777788999999999999988776665 6799999999999999999988
Q ss_pred HHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH---HHHHHHHhh
Q 008550 406 AREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV---SLLERYLKD 481 (561)
Q Consensus 406 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~~~~~ 481 (561)
+..+.+.. |..+.....-+..-... |++..|...+++..+..|+...+-...+....+.|+.+.+. .++.....-
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~-~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESN-GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 88888765 56666666667776666 99999999999999888999888888888899999999988 444444333
Q ss_pred CCCh----HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 482 WADD----SLHVKLAQV-FAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 482 ~~~~----~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+. ..+...++. +.-.++.+.|...+.+++...|++...+..+..+....+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3222 344555554 344588999999999999999999999999999887654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-09 Score=92.94 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=135.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (561)
.|.-|+++|.|++|+.+|.+.+..+|.++..+.+.+.+|.. +.+..|..-++.++.++.....+|...+.+-..+|...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555555555555555555555555555555 55555555555555555555555555555556666666
Q ss_pred HHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHH-------------HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCCh
Q 008550 368 AAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVK-------------EALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 434 (561)
+|.+.++.++.+.|...-+ -..+....... +|.+-..+++. ....|..+... |.+
T Consensus 183 EAKkD~E~vL~LEP~~~EL---kK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~--------~K~~G~~Fsk~-~~~ 250 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL---KKSLARINSLRERKIATKSTPGFTPARQGMIQILP--------IKKPGYKFSKK-AMR 250 (536)
T ss_pred HHHHhHHHHHhhCcccHHH---HHHHHHhcchHhhhHHhhcCCCCCccccchhhhcc--------ccCcchhhhhh-hcc
Confidence 6666666666665554111 00111111111 11111111111 11224445555 777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+.++.++-.-+.....+.....+ +..+.+..+++.|+.-..+++...|.. ......+...--.|...++...++.++.
T Consensus 251 ~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~ 329 (536)
T KOG4648|consen 251 SVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVK 329 (536)
T ss_pred ccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheee
Confidence 77777776655544333333333 566777778888888888877776655 4445555555666788999999999999
Q ss_pred cCCccHHHHHHHHHHHHhc-cCCCCCC
Q 008550 514 INSQNEAAKKGLERLEKQM-KGVDPDA 539 (561)
Q Consensus 514 ~~p~~~~~~~~l~~l~~~~-~~~~~~~ 539 (561)
+.|.+..+...+.+....+ ...+|++
T Consensus 330 ~~P~~~~~~~~~sr~~~~ii~~~~~~~ 356 (536)
T KOG4648|consen 330 VAPAVETPKETETRKDTKIVPESDNEA 356 (536)
T ss_pred eccccccchhhhhhhcccccccccccc
Confidence 9999999998888887544 2334444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00016 Score=69.94 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=86.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHh
Q 008550 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF 195 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 195 (561)
...+...+|.+|+.+++.+.........+-.++.-|...|+++.|.+.|.++=.. ..-..++.+.+.+..++
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHH
Confidence 4455678889999988887655555566677888888999999998888765211 11123445556666655
Q ss_pred hccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHH-------------HHH------HH----hCCCC-HHH
Q 008550 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELF-------------AEL------LQ----RFPNN-IHI 251 (561)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~-------------~~~------~~----~~~~~-~~~ 251 (561)
....+... .......+..++.-+-..|+|.+|.++| .+. ++ ..|+. .+.
T Consensus 812 kla~e~~~-------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt 884 (1636)
T KOG3616|consen 812 KLAEECHG-------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDT 884 (1636)
T ss_pred HHHHHhcC-------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence 55444321 1122223344455555556655554433 321 11 12322 356
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
+..+|.-+...|+...|...|-++
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhh
Confidence 667788888888888887777554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=71.04 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC---CHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS---RPEVFVAL 323 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 323 (561)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 355666666666666666666666666654333 345666666666666666666666666666665 44555555
Q ss_pred HHHHHh-cCHhHHHHHHHHHH
Q 008550 324 SVLWER-KDERGALSYAEKSI 343 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~ 343 (561)
+.++.. |++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555 66666666665554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=76.05 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=62.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLG-----AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAA 497 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~ 497 (561)
|.-++.. |+|++|..-|..++.+.|..+. .+.+.|.++.+++.++.|+....++++++|.. .++...|.+|.+
T Consensus 102 GN~~F~n-gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKN-GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhc-ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4444444 5556666666665555554322 34445556666666666666666666666655 555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 498 TNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 498 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+..+++|+..|+++++.+|....+.....+|-.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 666666666666666666666666665555543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-05 Score=72.64 Aligned_cols=431 Identities=15% Similarity=0.054 Sum_probs=243.0
Q ss_pred HhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHH---HHhhcccCccccccchhhhc
Q 008550 12 IDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQ---ALQYYKIVPKQNSTSSRSSL 88 (561)
Q Consensus 12 ~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~~~~~~~ 88 (561)
+....|.+|+.+...+++.. ........+-.-++.-..+....+-++|+.++.- ++......+.-...-+.-.+
T Consensus 111 yh~~~~g~a~~~~~~lv~r~---e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRT---ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLL 187 (696)
T ss_pred eeHhhcchHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc
Confidence 34556777777776665541 1111222233344455566666777777765433 33322111111000001111
Q ss_pred ccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCC-CcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 89 STSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
..+....+...+ .......++.....+.++...+..-+....+.+. ...+.+...++.+..++..|++.+|.+.+...
T Consensus 188 kt~s~~aAe~s~-~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 188 KTLSPSAAERSF-STADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred ccCCcchhcccc-hhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 111111111111 1111223456666777788888888887777743 33567788899999999999999999887654
Q ss_pred -HhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 008550 168 -LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-- 244 (561)
Q Consensus 168 -l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 244 (561)
+...|.....-. +..+ + .| -..|.++++.|.|.-+..+|.++++.
T Consensus 267 ni~~~~g~~~T~q-~~~c-i---------------------------f~---NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 267 NIHKEAGGTITPQ-LSSC-I---------------------------FN---NNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred ccccccCccccch-hhhh-e---------------------------ee---cCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 222232110000 0000 0 00 11277777788888888888888741
Q ss_pred -------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC---HhHHHHH
Q 008550 245 -------FP---------NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD---YSKLSKL 305 (561)
Q Consensus 245 -------~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~ 305 (561)
.| ..-++++..|..|...|++-.|.++|.+++.....+|..|.+++.++....+ .++-...
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 11 2357888899999999999999999999999988899999999988764321 1111111
Q ss_pred HHH--------------H--Hh--cCCCC------HHHHHHHHHHHHh---------cCHhHHHHHHHH-----------
Q 008550 306 VHD--------------L--LS--IDPSR------PEVFVALSVLWER---------KDERGALSYAEK----------- 341 (561)
Q Consensus 306 ~~~--------------~--~~--~~~~~------~~~~~~l~~~~~~---------~~~~~A~~~~~~----------- 341 (561)
..+ . ++ ..+.. |..-...+.+..+ .++..-...-..
T Consensus 395 ~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 395 LSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred cccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCC
Confidence 000 0 00 00000 1111111111100 000000000000
Q ss_pred ---------------HHhccCCCh-----------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHH-----H
Q 008550 342 ---------------SIRIDERHI-----------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGL-----V 390 (561)
Q Consensus 342 ---------------~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l-----~ 390 (561)
.+...|..+ .++...+.+-..+|+.-.|+..-.+.++...-..++..+ |
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAa 554 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAA 554 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 000001111 124556677788899999998888888765444444444 4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-----------------------HCCC----------C-----HHHHHHHHHHHhhhcC
Q 008550 391 HSYLQFSKVKEALYAAREAMK-----------------------AMPQ----------S-----AKALKLVGDVHASNAS 432 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~-----------------------~~p~----------~-----~~~~~~l~~~~~~~~~ 432 (561)
.+++.+++..+|...+.-.+- ++|. . ...++++|..+.-+ |
T Consensus 555 EAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq-~ 633 (696)
T KOG2471|consen 555 EALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQ-G 633 (696)
T ss_pred HHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHh-c
Confidence 445677888888876654210 0110 0 34678999999998 9
Q ss_pred ChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008550 433 GREKAKKFYESALRLEP--GYLGAALALAELHVIEGRNGDAVSLLERYL 479 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (561)
++++|..++..+..+-| .++.+......+-.++|+...|...+++.-
T Consensus 634 ~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 634 HHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred ccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 99999999999988877 556777777777789999999999888753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=68.07 Aligned_cols=66 Identities=27% Similarity=0.228 Sum_probs=56.0
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 260 AIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 260 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
+..|++++|+..|++++..+|++..++..++.++...|++++|...+++++...|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888999999999999999999999999999999999999999999998888888777776664
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-07 Score=70.05 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHH
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLA 492 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la 492 (561)
++.-|...... |+|++|++.|+.+....|.. ..+.+.++.+|++.|++++|+..+++.++++|.+ -+++..|
T Consensus 13 ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQK-GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 33334444443 44444444444444433332 2234444444444444444444444444444433 3444444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 493 QVFAATNM---------------LQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 493 ~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
.++..... ..+|...|+++++..|++..+....
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 44444433 6788999999999999887765443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-06 Score=66.55 Aligned_cols=146 Identities=14% Similarity=0.065 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHH
Q 008550 264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS-IDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (561)
Q Consensus 264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (561)
+++....-..+.+...|.. .-.+.++..+...|++.+|...|++++. +...++..+..+++.... +++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444444444443 3355666666677777777776666654 445556666666666666 666667666666
Q ss_pred HHhccCC--ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 342 SIRIDER--HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 342 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
..+.+|. .++....+|..+...|++.+|...|+.++...|+..+....+..+.++|+.++|...+....
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6666653 35566667777777777777777777777777777666666666677776666665554443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00017 Score=66.37 Aligned_cols=370 Identities=16% Similarity=0.076 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHhcCCCc--cc--chhHHHHHHHHHH-hcCChhhHHHHHHHHHhcC---CCcHHHH
Q 008550 109 EVKYKIASCHFALG--ETKAAIVEMEGIPSK--AR--NLQMSLLMAKLYR-NSRHNRGAVACYKECLRHC---PFFIEAI 178 (561)
Q Consensus 109 ~~~~~~a~~~~~~~--~~~~A~~~l~~~~~~--~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~---p~~~~~~ 178 (561)
.+...+|..+...| +...+++.++.+-.. |. .......+|.+++ -..+++.|...++++..+. |...+..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 46778889888899 899999999985332 33 2345677887755 5889999999999997554 3322211
Q ss_pred HHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCH----HHHH
Q 008550 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN-DYKGGLELFAELLQRFPNNI----HILL 253 (561)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~----~~~~ 253 (561)
+. ..-+.+.++.... .+..+...+.++++.....| ...+
T Consensus 88 f~------------------------------------a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllf 131 (629)
T KOG2300|consen 88 FQ------------------------------------AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLF 131 (629)
T ss_pred hH------------------------------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHH
Confidence 11 1222366666665 78888899999998766655 4566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CCCC---hHHHHHH--HHHHHhcCCHh---HHHHHHHHHHhcCCCCH-------
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSI-DPYI---MTYMDEY--AMLLKVKCDYS---KLSKLVHDLLSIDPSRP------- 317 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l--~~~~~~~~~~~---~A~~~~~~~~~~~~~~~------- 317 (561)
.++.++.-..++..|++.+.-.... ++.. ....+.+ +.++....+.. .+...+.++.+....++
T Consensus 132 QLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 132 QLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK 211 (629)
T ss_pred HHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 7888888888999888875432221 1111 1122222 22333333333 34444444444333332
Q ss_pred HHHHHHHHHHHh--cCHhHHHHHHHH---HHhc-cCC-----------Ch---hHHHH----HHHHH-------HhcCCh
Q 008550 318 EVFVALSVLWER--KDERGALSYAEK---SIRI-DER-----------HI---PGYIM----KGNLL-------LSMKRP 366 (561)
Q Consensus 318 ~~~~~l~~~~~~--~~~~~A~~~~~~---~~~~-~~~-----------~~---~~~~~----l~~~~-------~~~~~~ 366 (561)
..+..+..+|.. |+...+...+++ .++. .+. ++ ..|.- -+.+| ...|-+
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence 133344444443 666655544443 3321 111 00 00100 01111 234667
Q ss_pred hHHHHHHHHhHHhCCC-------hH--------HHHHHHHHHHhcCCHHHHHHHHHHHHH---HCCC-------CHHHHH
Q 008550 367 EAAVIAFRGAQELRPD-------LR--------SYQGLVHSYLQFSKVKEALYAAREAMK---AMPQ-------SAKALK 421 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~-------~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~p~-------~~~~~~ 421 (561)
++|.++-++++..... .+ .+-.++.+-.-.|++.+|++....+.+ ..|. .+...+
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence 7777777777654211 11 133556667778999999887776655 3444 245666
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPG-YL--GAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHVK 490 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~ 490 (561)
.+|...... +.++.|...|..+.+.... +. ....++|.+|.+.|+-+.-.+.++..-..+..+ .+++.
T Consensus 372 LlGlys~sv-~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v 450 (629)
T KOG2300|consen 372 LLGLYSHSV-NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYV 450 (629)
T ss_pred HHhhHhhhc-chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Confidence 777766666 8889999999988876432 22 244678899999887766666655543322111 46788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 491 LAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
.|...+..|++.+|...+.+.++..
T Consensus 451 ~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 451 YGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhc
Confidence 8888889999999999999998875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=74.79 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----H--HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----R--SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
+..-|.-++..|+|++|...|..++...|.. + .|.+.|.+.++++.++.|+..+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445777888999999999999999988874 2 267888899999999999999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008550 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 462 (561)
|.++ ..+++|+..|++.++.+|....+.-..+++-
T Consensus 178 yek~-ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 178 YEKM-EKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhh-hhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9998 9999999999999999998876665555443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-07 Score=70.75 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=95.0
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHH
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 118 (561)
+......++..|...++.|+|++|++.|+.+....|..+ -...+.+.++.+|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----------------------------ya~qAqL~l~yay 57 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----------------------------YAEQAQLDLAYAY 57 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----------------------------ccHHHHHHHHHHH
Confidence 445566899999999999999999999999999987544 2246899999999
Q ss_pred HhcCCHHHHHHHHhc-CCC---cccchhHHHHHHHHHHhcCC---------------hhhHHHHHHHHHhcCCCcHHHHH
Q 008550 119 FALGETKAAIVEMEG-IPS---KARNLQMSLLMAKLYRNSRH---------------NRGAVACYKECLRHCPFFIEAIT 179 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~-~~~---~~~~~~~~~~l~~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~~~ 179 (561)
.+.|++++|+..+++ +.. +|.-+-+++..|.++..+.. ..+|...|+++++..|++..+.-
T Consensus 58 y~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 58 YKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999998 433 35556678899999988876 88999999999999999876643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.5e-08 Score=66.99 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=49.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 008550 459 AELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLER 527 (561)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 527 (561)
..++...+++++|++++++++..+|++ ..+..+|.++...|++.+|...|+++++..|+++.+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 456667777777777777777777766 667777777777777777777777777777777776655544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-06 Score=80.41 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=91.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHH
Q 008550 425 DVHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~ 502 (561)
.+|.+..|+...|++++..++...|.... ...++|.++.+.|-..+|-..+.+++.+.... -.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33333359999999999999999887544 56789999999999999999999999987443 78899999999999999
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 503 EALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 503 ~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.|++.|+.|++++|+++.+...|..+.-
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999888876643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=65.81 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=50.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 289 (561)
..++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777776654443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-05 Score=64.23 Aligned_cols=224 Identities=17% Similarity=0.123 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------------------h-HHHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------------------M-TYMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~-~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
....|...-.++.+....++|..-+...-+.+..+ | ......+.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35666677777778888888877776655544222 0 1223345555566666665554443
Q ss_pred HHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HH-
Q 008550 309 LLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS- 385 (561)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~- 385 (561)
+... ...+...... ...+..+..+++-+ ..+.+.+..++.-.|+|.-.+..+.+.++.+|.. ++
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 3221 1111122222 23345555555543 3456677788888888888888888888887554 44
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 459 (561)
...+|.+..+.|+.+.|..+++.+-+.. .....+..+.+.++.-. +++..|...|.+++..+|.++.+..+.|
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~-nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ-NNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc-cchHHHHHHHhhccccCCCchhhhchHH
Confidence 6678888888888888888888554322 23345666677777776 8888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 460 ELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.|+...|+..+|++.++.++...|.+
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 88888888888888888888888865
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-05 Score=73.80 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
+..|+|+.|...++.+...|.....|..++.+.+..|+.--|.++|..+
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5679999999999999888988899999999999999998888888754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=64.05 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=67.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHHHHHHHHH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-----SLHVKLAQVFA 496 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~la~~~~ 496 (561)
.-|.++... |+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+.-+++++++..+. ..+...|.+|.
T Consensus 48 l~~valaE~-g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEA-GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhc-cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 345555554 777777777777777777777777777777777777777777777777765432 56777778888
Q ss_pred HcCCHHHHHHHHHHHHhcCCc
Q 008550 497 ATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~ 517 (561)
..|+-+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888888888777766543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=65.90 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=87.6
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc----C-CC-hhHHHHHHHHHHhcCChh
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID----E-RH-IPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~----~-~~-~~~~~~l~~~~~~~~~~~ 367 (561)
-.+++++|.++|.++- ..|.. ++|..|=..|.++-... . .+ ...+...+.+|. ..++.
T Consensus 26 g~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChH
Confidence 3456677776666543 33333 44554444444443321 1 11 233444444443 34777
Q ss_pred HHHHHHHHhHHhCCCh-------HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCC
Q 008550 368 AAVIAFRGAQELRPDL-------RSYQGLVHSYLQF-SKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASG 433 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 433 (561)
+|+.++++++++..+. ..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-... ++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l-eq 169 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL-EQ 169 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH-HH
Confidence 7777777777664432 1134556666544 56666666666665544322 12233333333343 66
Q ss_pred hHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 434 REKAKKFYESALRLEPGYLG-------AALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
|.+|+..|++.....-+++- ..+.-|.|++-..+.-.+...+++..+.+|.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 66666666665554333321 2233455555555555555555555555553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00053 Score=68.99 Aligned_cols=254 Identities=16% Similarity=0.089 Sum_probs=127.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|.+....+-|++|..+|.+.- -+..+... .....+..+.|.++-+++ +.+..|..+|....+.|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 566666677777777765431 11111111 112234444444444433 233455555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc----------------------------cCCChhH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----------------------------DERHIPG 352 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----------------------------~~~~~~~ 352 (561)
|++.|-++ ++|..+........+ |.|++-++++..+.+. .|+.. -
T Consensus 1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A-~ 1196 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA-N 1196 (1666)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch-h
Confidence 55544322 344444444444444 5555555554444332 22211 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
....|.-++..|.|+.|.-+|... .-|..++..+..+|+|..|....+++ ++...|...+..+... +
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~-~ 1263 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDK-E 1263 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhch-h
Confidence 233444455555555554444332 12445555566666666666555543 3445555555555543 4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.+.-|.-+=-.. --+.+-+-.+...|...|-+++-+..++.++-+.... ..+..+|.+|.+- ++++-.++++-.
T Consensus 1264 EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1264 EFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred hhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 443332111000 0123445567777888888888888888887776655 5666666666554 466666665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-05 Score=61.43 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHhccCCCh------hHHHHHHHHHHhc-CChhHHHHHHHHhHHhCCCh-------H
Q 008550 319 VFVALSVLWERKDERGALSYAEKSIRIDERHI------PGYIMKGNLLLSM-KRPEAAVIAFRGAQELRPDL-------R 384 (561)
Q Consensus 319 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~ 384 (561)
.+...+.+|...++++|+.++++++++..+.. ..+..+|.+|... .++++|+.+|+++-+..... .
T Consensus 76 ~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 76 TYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 34444555555677777777777776654332 2344677777654 78888888888887764332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
.+...+..-...++|.+|+..|+++....-+++ ..++.-|.|+... .+.-.+...+++-.+++|.....
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~-~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK-ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc-ccHHHHHHHHHHHHhcCCccccc
Confidence 456667777788899999999998877655543 3445667777776 78777888888888888876554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00012 Score=61.78 Aligned_cols=241 Identities=14% Similarity=0.039 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
....|...-.++.+...+++|..-+...-..+..+ .++. . .....|.....-..+...+
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pd--l~Ye----------------y---~p~iyp~rrGSmVPFsmR~ 126 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPD--LYYE----------------Y---YPHVYPGRRGSMVPFSMRI 126 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcc--eeee----------------e---ccccCCCCcCccccHHHHH
Confidence 44566666667777777777766655544443211 0100 0 0011122222233344555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+.|.+....|+..+.+.-+...... ...+..........+..++.+++-+. .+.+.+..++.-.|.|
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy 193 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEY 193 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhh
Confidence 6677777778887777666655321 11222222223333555666665433 3455666677777777
Q ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC------CChhHHHHHHHHHHhcCChhHHHH
Q 008550 300 SKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE------RHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 300 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
.-....+.++++.+ |.+|.....+|.+..+ ||.+.|..+|++.-+... ....+..+.+.++.-.+++..|..
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHH
Confidence 77777777777766 4556666666776666 777666666665432211 111223333444444444444444
Q ss_pred HHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 372 AFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.+.+.+..+|.+. +.++.+.|....|+..+|++.++.+++..|
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444444444432 233344444444444444444444444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0027 Score=64.75 Aligned_cols=415 Identities=14% Similarity=0.052 Sum_probs=220.4
Q ss_pred CCCCchhhhHHHHHHHHHHhh-hchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCCh--HHH
Q 008550 34 NGETSPHLKAENLIILGDSLF-RDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINE--NEV 110 (561)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 110 (561)
....+|...+.+++.+|.+++ ...+++.|..++++++.+... + .+.+ ...
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~--------------------------~~~d~k~~~ 102 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H--------------------------RLTDLKFRC 102 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c--------------------------chHHHHHHH
Confidence 456688999999999999998 688999999999999888532 1 0111 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCc----ccchhHH---HHHHHHHHhcCChhhHHHHHHHHHhcC--CCcHHHHHHH
Q 008550 111 KYKIASCHFALGETKAAIVEMEGIPSK----ARNLQMS---LLMAKLYRNSRHNRGAVACYKECLRHC--PFFIEAITAL 181 (561)
Q Consensus 111 ~~~~a~~~~~~~~~~~A~~~l~~~~~~----~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l 181 (561)
.+.++.++.+.+... |...+++.... +.....| +.........+++..|+..++...... +.++.+....
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 566788888888777 88888873222 2222222 222444444589999999999988765 3444443322
Q ss_pred HHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C----CCHHH
Q 008550 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF------P----NNIHI 251 (561)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~----~~~~~ 251 (561)
.+..+.+....+..+++++.++++.... | ....+
T Consensus 182 ------------------------------------~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~ 225 (608)
T PF10345_consen 182 ------------------------------------SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKA 225 (608)
T ss_pred ------------------------------------HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 1222444444454555555554443210 0 11222
Q ss_pred HHHHHH--HHHHhCCHHHHHHHHHHH---Hhh---CC--------------------------CC----------hHHHH
Q 008550 252 LLEMAK--VDAIIGKNDEAILNFEKV---RSI---DP--------------------------YI----------MTYMD 287 (561)
Q Consensus 252 ~~~la~--~~~~~~~~~~A~~~~~~~---~~~---~~--------------------------~~----------~~~~~ 287 (561)
+..+-. ++...|+++.+...++.. ++. .| .. .-++.
T Consensus 226 ~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~ 305 (608)
T PF10345_consen 226 LFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYF 305 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHH
Confidence 222222 233344444443332222 111 10 00 00122
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcC-------CCCH-------------------HHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 288 EYAMLLKVKCDYSKLSKLVHDLLSID-------PSRP-------------------EVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~-------------------~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
.-|......+..+.|.++++++++.- +..+ .+.+..+.+... +++..+.....
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~ 385 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELE 385 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 22334444555556655555554321 1110 022233333344 88888888777
Q ss_pred HHHhcc---CC------ChhHHHHHHHHHHhcCChhHHHHHHH--------HhHHhCCChH----HHHHHHHHHHhcCCH
Q 008550 341 KSIRID---ER------HIPGYIMKGNLLLSMKRPEAAVIAFR--------GAQELRPDLR----SYQGLVHSYLQFSKV 399 (561)
Q Consensus 341 ~~~~~~---~~------~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~----~~~~l~~~~~~~~~~ 399 (561)
.+.... |. .+..++..|..+...|+.+.|...|. .+....+..+ +..++..++...+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 386 FMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred HHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 666542 22 35667888888888999999999997 3333344443 234566666655543
Q ss_pred HH----HHHHHHHHHHHCCCCHH-----HHHHHHHHHhhh-cCChHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHH
Q 008550 400 KE----ALYAAREAMKAMPQSAK-----ALKLVGDVHASN-ASGREKAKKFYESALRLE-P--GY----LGAALALAELH 462 (561)
Q Consensus 400 ~~----A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~-p--~~----~~~~~~la~~~ 462 (561)
.. +...++..-....+.+. ++..+-..+... .-...++...+..+++.. . ++ .-++..++..+
T Consensus 466 ~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 466 DDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred chhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 33 33333322221111111 111111111110 122346777777766544 1 11 12344556666
Q ss_pred HHcCChHHHHHHHHHHHhhCC---Ch--HHH-----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 463 VIEGRNGDAVSLLERYLKDWA---DD--SLH-----VKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~---~~--~~~-----~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+ .|+..+.......+..... +. ..| ..++..+...|+.++|.....+.-.
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 6 7888877777666665432 22 344 3455667788999999888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0013 Score=60.46 Aligned_cols=430 Identities=13% Similarity=0.075 Sum_probs=218.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+...|-++-+++++.+|.+.|.++.+...+.|.- -..++...+.....-+++.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~--------------------------lkeEvl~grilnAffl~nl 61 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL--------------------------LKEEVLGGRILNAFFLNNL 61 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH--------------------------HHHHHHhhHHHHHHHHhhH
Confidence 45567888999999999999999998764222200 0122333333333334455
Q ss_pred HHHHHHHhcCCC-cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 125 KAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 125 ~~A~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
+.-...+-.+.. .|..+-..+..|.+..+.|.+.+|+..+......-......+.... +. .
T Consensus 62 d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-i~-------~---------- 123 (549)
T PF07079_consen 62 DLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-IQ-------Q---------- 123 (549)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-HH-------H----------
Confidence 444444333322 2566667777899999999999999998877665333322232210 00 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC----CCHHHHH----HHHHHHHHh----CCHHHHHH
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FP----NNIHILL----EMAKVDAII----GKNDEAIL 270 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~----~~~~~~~----~la~~~~~~----~~~~~A~~ 270 (561)
.-..++.-...|.+++..|.+.+++.++++++.. .| -+.+.+. .+|+.|+-. ...+-+..
T Consensus 124 -------l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 124 -------LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPD 196 (549)
T ss_pred -------HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChH
Confidence 0122333445699999999999999999999864 33 2344433 455555421 12222222
Q ss_pred HH-------HHHHhhC--------CCChHHHHHHHHHH---------------------HhcCCHhHHHHHHHHHHhcCC
Q 008550 271 NF-------EKVRSID--------PYIMTYMDEYAMLL---------------------KVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 271 ~~-------~~~~~~~--------~~~~~~~~~l~~~~---------------------~~~~~~~~A~~~~~~~~~~~~ 314 (561)
+| .++-..+ |.. .....+.... +-.-+++-.++.+..-+-.+|
T Consensus 197 yYemilfY~kki~~~d~~~Y~k~~pee-eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~ 275 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQRPYEKFIPEE-ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP 275 (549)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhCcHH-HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh
Confidence 22 2221111 111 0000000000 011122222222222222222
Q ss_pred CCH-HHHHHHH----------------HHH---Hh-cCHhHHHHHHHHHHhccCCChhHHHH------HHHHHH-hcC--
Q 008550 315 SRP-EVFVALS----------------VLW---ER-KDERGALSYAEKSIRIDERHIPGYIM------KGNLLL-SMK-- 364 (561)
Q Consensus 315 ~~~-~~~~~l~----------------~~~---~~-~~~~~A~~~~~~~~~~~~~~~~~~~~------l~~~~~-~~~-- 364 (561)
... .....++ .++ .. ++...|-.++.-...++|+....... +-.+.. .-.
T Consensus 276 e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~ 355 (549)
T PF07079_consen 276 EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESY 355 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHH
Confidence 211 0000011 000 11 23334444444444444443311100 001111 000
Q ss_pred -ChhHHHHHHHHhHHhCCChH--H--HHHHHHHHHhcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 365 -RPEAAVIAFRGAQELRPDLR--S--YQGLVHSYLQFSK-VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 365 -~~~~A~~~~~~~~~~~~~~~--~--~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
+...=+..++.+-..+-+.. + ...-|.-+++.|. -++|+..++.++...|.+...-...-.... ..|.+|+
T Consensus 356 Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK---q~Y~qaL 432 (549)
T PF07079_consen 356 TKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK---QAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH---HHHHHHH
Confidence 01111222222222222221 1 2344666777776 888999999999988887654433222211 2233332
Q ss_pred H--HHHHHHH---------hCCC---CHHHHHHH--HHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHH
Q 008550 439 K--FYESALR---------LEPG---YLGAALAL--AELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 439 ~--~~~~a~~---------~~p~---~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 502 (561)
. .+.+.+. +.|- +.+.-..+ |..++..|+|.++.-+-.=..+..|++.++..+|.|.....+|.
T Consensus 433 s~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHH
Confidence 2 2222222 1222 23333334 55678899999999888888899998899999999999999999
Q ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHhc
Q 008550 503 EALSHYEAALRINSQ----NEAAKKGLERLEKQM 532 (561)
Q Consensus 503 ~A~~~~~~al~~~p~----~~~~~~~l~~l~~~~ 532 (561)
+|..++... .|+ +..+...+..+++.+
T Consensus 513 eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 513 EAWEYLQKL---PPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHHHhC---CCchhhHHHHHHHHHHHHHHhh
Confidence 999998764 332 234455555555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=78.21 Aligned_cols=67 Identities=24% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 380 RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA---LKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 380 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
+|++ .+++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+ |++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 3444 468888888888888888888888888888888754 88888888887 8888888888888886
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0038 Score=63.24 Aligned_cols=238 Identities=14% Similarity=0.142 Sum_probs=151.0
Q ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCc-HHHHHHHH
Q 008550 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PFF-IEAITALA 182 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~-~~~~~~l~ 182 (561)
+.+++|..+|.+.++.|...+|++.+-+ .+++..+.....+..+.|.|++-+.++.-+-+.. |.- .+..+.++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 4456899999999999999999887653 3556778888888889999999988887776543 322 22333333
Q ss_pred HHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 008550 183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII 262 (561)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (561)
... +..+.++.+.-- ... ..-.-|.-++..|.|+.|.-+|..+ .-|..++..+..+
T Consensus 1178 kt~-rl~elE~fi~gp------------N~A---~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1178 KTN-RLTELEEFIAGP------------NVA---NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYL 1233 (1666)
T ss_pred Hhc-hHHHHHHHhcCC------------Cch---hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHH
Confidence 221 111221111100 000 1112277788888888888777643 4566778888888
Q ss_pred CCHHHHHHHHHHHHhhC-----------C--------------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH
Q 008550 263 GKNDEAILNFEKVRSID-----------P--------------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~-----------~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
|+|..|...-+++-... . -+.+-+..+...|...|-+++-+.+++.++.+..-+-
T Consensus 1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 88888887776653211 0 0123345667778888888888888888888777777
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHhcc--C------CChhHHHHHHHHHHhcCChhHHHH
Q 008550 318 EVFVALSVLWERKDERGALSYAEKSIRID--E------RHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 318 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--~------~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
..+..+|.+|.+=++++-.+.++-....- | +....|..+..+|.+-..|+.|.-
T Consensus 1314 gmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1314 GMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 78888888887755665555554332210 1 123456667777777677766643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=72.12 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
|..+.....+.+..+.|..+|.++.+..+....+|...|.+-....++.+.|..+|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 55555666666667777777777775555566777777777555435556688888888888788777777777777788
Q ss_pred CChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 466 GRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
|+.+.|..+|++++..-+.. .+|......-...|+.+...+..+++.+..|++........
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888888887776654 47777888888888888888888888888887655554433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-06 Score=66.14 Aligned_cols=107 Identities=22% Similarity=0.187 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASG----------REKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 468 (561)
++.|.+.++.....+|.+++.++..|.++..+ .+ +++|+.-|+.++.++|+..++++.+|.++...+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLEL-Aqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLEL-AQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 67888888888999999999999999888765 33 36677777888888999888998888888766531
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.|+. -.....+++|..+|++|...+|+|...+..|...
T Consensus 86 -------------~~d~---------~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 -------------TPDT---------AEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ----------------H---------HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -------------cCCh---------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1111 0111225667777777777777777666666544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=79.22 Aligned_cols=70 Identities=24% Similarity=0.185 Sum_probs=61.7
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA---ALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
.+|+++..++++|.++... |++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5788899999999999988 99999999999999999998854 8999999999999999999999998873
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=59.48 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=80.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLK 294 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~ 294 (561)
-.+|..+...|+.+.|++.|.+++...|..+.++...+..+.-+|+.++|+..+++++++..... .++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34578888889999999999999999999999999999999999999999999999998865442 46777888888
Q ss_pred hcCCHhHHHHHHHHHHhcCC
Q 008550 295 VKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~ 314 (561)
..|+.+.|..-|+.+.++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88888888888887766544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00025 Score=69.08 Aligned_cols=172 Identities=17% Similarity=0.114 Sum_probs=128.9
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-H--------HHHHHHHHHH----hcCCHHHHHH
Q 008550 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R--------SYQGLVHSYL----QFSKVKEALY 404 (561)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~--------~~~~l~~~~~----~~~~~~~A~~ 404 (561)
.|.-++.+-|. ....+..+.--.|+-+.++..+.++.+ .++. . .|+.....+. .....+.|.+
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 34445555443 233344444556899999999998876 3332 1 1122221122 3457888999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
++.......|+.+-.++..|.++... |+.++|++.|++++.....- .-.++.+++++..+++|++|...+.+..+
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 99999999999999999999999998 99999999999988533322 23568899999999999999999999999
Q ss_pred hCCCh--HHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 008550 481 DWADD--SLHVKLAQVFAATNML-------QEALSHYEAALRI 514 (561)
Q Consensus 481 ~~~~~--~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 514 (561)
.+.-+ -..+..|.|+...|+. ++|.+.|.++-.+
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 87765 5667789999999999 8899999888554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=61.18 Aligned_cols=63 Identities=29% Similarity=0.280 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADD-----SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
..++..+|.++...|++++|+.+|+++++.. ++. .++..+|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456667777777777777777777776542 111 46677778888888888888888777765
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8e-05 Score=65.14 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=56.2
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-CCChHH----HHHHHHHHHhcCCHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRS----YQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~~~~A~~ 404 (561)
|++.+|...+++.++-.|.+.-++..--.+++.+|+...-...+++.+.. +++.+. .-.++..+...|-+++|.+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 55555555555555555555555554455555555555555555554443 333321 1123444445555555555
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (561)
..+++++++|.+..+....+.++... |++.++.+.+.+
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLEMN-GRHKEGKEFMYK 234 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHHhc-chhhhHHHHHHh
Confidence 55555555555555555555555544 555555554444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.3e-05 Score=69.07 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. ++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455566666666667777777777776555566777777776444 555567777777777777777777777777777
Q ss_pred cCChhHHHHHHHHhHHhCCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH
Q 008550 363 MKRPEAAVIAFRGAQELRPDLR----SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (561)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (561)
.|+.+.|..+|++++..-|... .|......-...|+.+...++.+++.+..|++....
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 7777788888887777665553 466677777777888888888888888777654433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.3e-06 Score=64.67 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC-
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS----------KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG- 433 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~- 433 (561)
++.|.+.++.....+|.+ ..+++-|.++..+. .+++|+.-|++++.++|+...+++.+|.++... +.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~-A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL-AFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-Hhh
Confidence 678999999999999998 66888888887653 356778888889999999999999999999876 32
Q ss_pred ----------hHHHHHHHHHHHHhCCCC
Q 008550 434 ----------REKAKKFYESALRLEPGY 451 (561)
Q Consensus 434 ----------~~~A~~~~~~a~~~~p~~ 451 (561)
|++|..+|+++...+|++
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455555555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0032 Score=57.86 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=152.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh---
Q 008550 304 KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--- 379 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 379 (561)
-.+++++...|-.+++|+........ ++-++|+...++.+...|. ....++.+|...++-+....+|+++.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 34677778888888999988888877 8888999888888766665 6667777777777766666666554321
Q ss_pred ---------------CCCh--H-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc
Q 008550 380 ---------------RPDL--R-----------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA 431 (561)
Q Consensus 380 ---------------~~~~--~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 431 (561)
+|.. + +|......-.+..-.+.|..+|.++-+..-....++..-|.+-....
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 0100 0 12222222234444666777777765543233444444444333334
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
|++.-|-..|+-.+...|+++......-..+...++-..|..+|+++++.-... .+|-.+...-..-|+...+...=
T Consensus 446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 999999999999999999988877777888889999999999999888755433 78888888888889999999998
Q ss_pred HHHHhcCCccHHHH
Q 008550 509 EAALRINSQNEAAK 522 (561)
Q Consensus 509 ~~al~~~p~~~~~~ 522 (561)
++...+.|.....-
T Consensus 526 ~rf~e~~pQen~~e 539 (660)
T COG5107 526 ERFRELVPQENLIE 539 (660)
T ss_pred HHHHHHcCcHhHHH
Confidence 99989888764433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-06 Score=51.74 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.++..+|.+|...|++++|++.|+++++.+|+|+.++..++.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4678899999999999999999999999999999999888753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00056 Score=57.30 Aligned_cols=161 Identities=15% Similarity=0.057 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-----CC-H
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-----SR-P 317 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-~ 317 (561)
..+..-+.+|...+++++|..++.++.+-...+. .++...+.+......+.++..+++++....- +. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 4455556677777888888888888775444331 2344455555566666667666666654321 11 1
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHhccCCCh------hHHHHHHHHHHhcCChhHHHHHHHHhHHhC------CCh-H
Q 008550 318 EVFVALSVLWERKDERGALSYAEKSIRIDERHI------PGYIMKGNLLLSMKRPEAAVIAFRGAQELR------PDL-R 384 (561)
Q Consensus 318 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~-~ 384 (561)
.++-.-+.+....++++|+.+|++++.+-..+. +.+...++++.+..++.+|-..+.+-.... ++. .
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 122223333333555566666665554322211 223344455555555555554444422211 111 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
.+.....++....+|..|..+++...
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 23333444444445555555555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.1e-06 Score=51.64 Aligned_cols=43 Identities=28% Similarity=0.178 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHH
Q 008550 141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE 183 (561)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (561)
+.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999988864
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00025 Score=59.33 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=73.3
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYMDEYAMLL 293 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~ 293 (561)
...-+.++|+++|++++.....+ .+.+...++++.+..++.+|-..+.+-... .|+....+.....++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34566777777777777643222 345556677888888888887777664332 222234455555666
Q ss_pred HhcCCHhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcCHhHHHHHHH
Q 008550 294 KVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWERKDERGALSYAE 340 (561)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (561)
....+|..|..+++...++ .|.+..+.-+|-..|..|+.++..+.+.
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 6677888888888876554 2444556666666776677777666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0048 Score=56.72 Aligned_cols=372 Identities=12% Similarity=0.054 Sum_probs=217.7
Q ss_pred HHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhH---HhhccccccCCC
Q 008550 129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS---LFAQTPNRSGRA 205 (561)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 205 (561)
.+-+++..+|.+...|+.+...+..+|.+++-.+.|+++..-.|-.+.+|.....-....+++.. .+..+..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~----- 104 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK----- 104 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh-----
Confidence 34456788899999999999999999999999999999999999888888655333222333322 1221111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hCCHH
Q 008550 206 PFDHLDSSRWLHRYVEAQCCIASND----------YKGGLELFAELLQRFPNNIHILLEMAKVDAI---------IGKND 266 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~ 266 (561)
....-..|..++ .|.+.-+ .-+|-+..-.+.-.+|.....|...+..+.. +.+.+
T Consensus 105 --k~l~ldLW~lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 105 --KSLNLDLWMLYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred --hhccHhHHHHHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 112233343332 1222211 1222222222333466666677666665432 33455
Q ss_pred HHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC-------------CHhHHHHHHHHHHhc-------CCCCHH-------
Q 008550 267 EAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC-------------DYSKLSKLVHDLLSI-------DPSRPE------- 318 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-------------~~~~A~~~~~~~~~~-------~~~~~~------- 318 (561)
.-...|.+++...-.+. ..|..+-..-...+ -|..|...+++...+ +|.+..
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc
Confidence 66677777777655554 33443333222211 134455555554332 121111
Q ss_pred ----HHHHHHHHHH------hcC-Hh-HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHH
Q 008550 319 ----VFVALSVLWE------RKD-ER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386 (561)
Q Consensus 319 ----~~~~l~~~~~------~~~-~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (561)
-|.+....-. .++ .. .---.+++++...|-.++.|+.........++-+.|+...++++...|.. .
T Consensus 259 ~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL--~ 336 (660)
T COG5107 259 TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL--T 336 (660)
T ss_pred cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch--h
Confidence 1222221111 112 12 22234667777778888899998888899999999999999998888872 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH---------------CCCC---------------HHHHHHHHHHHhhhcCChHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKA---------------MPQS---------------AKALKLVGDVHASNASGREK 436 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~p~~---------------~~~~~~l~~~~~~~~~~~~~ 436 (561)
..++.+|...++-+....+|+++.+. ..++ .-+|+.+-....+. ...+.
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~-~Gl~a 415 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK-RGLEA 415 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH-hhHHH
Confidence 34556666555555555555554321 0011 12222233333333 55788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 437 AKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDAVSLLERYLKDWADDSLH-VKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
|...|-++-+..-...+++..-|.+ +...|++..|..+|+-.+...|++.++ ...-..+...|+-+.|...|++++..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 8888888766542333444444433 456799999999999999999988433 44556677889999999999977654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00015 Score=58.59 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 120 (561)
...-+-+.++..++..|++++|+..++.++.... +.. -..-+..++|++.+.
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~---------------------------lk~l~~lRLArvq~q 138 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DEN---------------------------LKALAALRLARVQLQ 138 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHH---------------------------HHHHHHHHHHHHHHH
Confidence 3344667889999999999999999999986521 000 013478889999999
Q ss_pred cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcH
Q 008550 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI 175 (561)
Q Consensus 121 ~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 175 (561)
.|.+++|+..++.+......+......|.++...|+-.+|+..|++++...+...
T Consensus 139 ~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 139 QKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999999877766677788999999999999999999999999975443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00015 Score=67.36 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=100.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC-cccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT-PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 146 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
.+..-.-+..++..-++.-+++++.+|++..++..|++-... ..+.+..+.++.+. |..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA--------------------gE~ 232 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA--------------------GEA 232 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH--------------------HHH
Confidence 344445577889999999999999999999999988653211 22222222222111 111
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhcCCHh
Q 008550 225 CIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 300 (561)
.+......+....+-......+.+ +.+...+|.|..+.|+.++|++.++..++..|. +..++..+..++...+.+.
T Consensus 233 ~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 233 SLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 111111111111111111111111 445667899999999999999999999987775 3567888999999999999
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 008550 301 KLSKLVHDLLSI-DPSRPEVFVALSVLW 327 (561)
Q Consensus 301 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 327 (561)
++..++.+.-+. -|+++...+..+.+.
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 999888886443 355555555555443
|
The molecular function of this protein is uncertain. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=60.96 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRL----EPGY---LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
..++..+|.++... |++++|+.+|++++++ .+++ ..++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYREL-GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44566666666665 6666666666666643 1111 335566777777777777777777776654
|
... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-05 Score=64.73 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=86.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
.|..++....|..|+..|.+++..+|..+..+...+.++++..+++.+.....++++++|+....++.+|.+......++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 37788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 008550 301 KLSKLVHDLLSI 312 (561)
Q Consensus 301 ~A~~~~~~~~~~ 312 (561)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999654
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0023 Score=54.36 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh--cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh-HHHHHHHHhHHhCC
Q 008550 305 LVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE-AAVIAFRGAQELRP 381 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~ 381 (561)
+-..++..+|.+-.+|...-.++.. .+..+-++++...+.-+|++-.+|...-.+....|++. .-+++.+.++..+.
T Consensus 65 LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 65 LTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred HHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccc
Confidence 3334444444444444444444333 34444444555555555555555444444444444444 34444444444433
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH
Q 008550 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (561)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (561)
.+ .+|...-.+....+.++.-+.+..+.++.+-.+-.+|
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 33 3444444444444445555555555554444343333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00019 Score=66.71 Aligned_cols=190 Identities=12% Similarity=0.053 Sum_probs=116.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE 332 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 332 (561)
.+..-..+..++..-++.-.++++++|+..+++..++.- ...-..+|..+++++++.....- ........ |..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 444445566777777777777777777777777666532 12235666666666665322110 00000000 111
Q ss_pred hHHHHHHHHHHhccCCC--hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 333 RGALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
-+ .....+.+ ..+...+|.+..+.|+.++|++.++..++..|.. ....++..++...+.+.++...+.
T Consensus 247 ~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 WE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 11111111 3445678999999999999999999999887763 468899999999999999999888
Q ss_pred HHHHH-CCCCHHHHHHHHHHHhhhcCC---------------hHHHHHHHHHHHHhCCCCHHHHH
Q 008550 408 EAMKA-MPQSAKALKLVGDVHASNASG---------------REKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 408 ~~~~~-~p~~~~~~~~l~~~~~~~~~~---------------~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
+.-+. -|+.+...+..+.+..+..++ -..|++.+.+|++.+|..+..+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 86443 355566555555443332122 13467888888888888765543
|
The molecular function of this protein is uncertain. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=65.22 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.-|..++...+|..|+.+|.+++.++|...+ |.+.+.++++.++++.+.....+++++.|+....++.+|.+.... ..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-cc
Confidence 3466666677777777777777777777744 667777777777777777777777777777777777777777776 77
Q ss_pred hHHHHHHHHHHHHh
Q 008550 434 REKAKKFYESALRL 447 (561)
Q Consensus 434 ~~~A~~~~~~a~~~ 447 (561)
+++|+..+.++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 77777777777554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=63.48 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=129.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCh---HHHHHHHHHHHhcC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI-DPYIM---TYMDEYAMLLKVKC 297 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~ 297 (561)
+......|++.+|....+++++..|.+.-++..--.+++..|+...-...+++++.. +|+-| .+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 566678899999999999999999999988888888999999999999999999877 66653 44556788889999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC----hhHHHHHHHHHHhcCChhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 372 (561)
-+++|.+..+++++++|.+..+....+.++.. +++.++.++..+.-..-... .--|...+.++...+.|+.|+.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999988 99999999887653322111 12355678888889999999999
Q ss_pred HHHhH
Q 008550 373 FRGAQ 377 (561)
Q Consensus 373 ~~~~~ 377 (561)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00061 Score=62.61 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=82.1
Q ss_pred HHHHHHHh---cCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHhhh--------cCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 388 GLVHSYLQ---FSKVKEALYAARE-AMKAMPQSAKALKLVGDVHASN--------ASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 388 ~l~~~~~~---~~~~~~A~~~~~~-~~~~~p~~~~~~~~l~~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
..|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|... ....++|+.+|.++.+.+|+ ...-
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~G 262 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSG 262 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccch
Confidence 34444444 5555555555555 2333444555555555555432 12357788888888887754 3444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH--------hhC---CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYL--------KDW---ADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~--------~~~---~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
.+++.++...|...+....+++.. +.. +.. -....++.+..-.|++++|.+++++++++.|..-...
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 566666666665433332222221 111 111 3446677788889999999999999999998876655
Q ss_pred HHHHHHH
Q 008550 523 KGLERLE 529 (561)
Q Consensus 523 ~~l~~l~ 529 (561)
..+..+.
T Consensus 343 St~~ni~ 349 (374)
T PF13281_consen 343 STLENIK 349 (374)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.012 Score=56.44 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HhcCCHhHHHHHHHHHH
Q 008550 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL-KVKCDYSKLSKLVHDLL 310 (561)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 310 (561)
+.+...|...+...|-....|...|..-.+.|..+.+.+.|++++.--|.+...|..+.... ...|+.+.-...|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 56677777888888888888888999999999999999999999999898888777655443 34567777778888887
Q ss_pred hcCCCC---HHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 311 SIDPSR---PEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 311 ~~~~~~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
.....+ ...|-..-..... +++..-...|++.++..
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 765544 3345444444444 77777777777776643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-06 Score=46.92 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 441 YESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 441 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777777777777777777777777777764
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0096 Score=62.21 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=84.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh----c
Q 008550 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA----L 121 (561)
Q Consensus 46 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~ 121 (561)
.....+++...+.|++|+..|+++-...|+-..- .++.+..|...+. .
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 529 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG----------------------------YEAQFRLGITLLEKASEQ 529 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc----------------------------hHHHHHhhHHHHHHHHhc
Confidence 3455678889999999999999999887754432 3455555555543 2
Q ss_pred ---CCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHH
Q 008550 122 ---GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (561)
Q Consensus 122 ---~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 178 (561)
..+++|+..|+.+...+..|--|...|.+|.+.|++++-+++|.-+++..|..++..
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 530 GDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 358999999999988888888999999999999999999999999999999887644
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.017 Score=57.91 Aligned_cols=246 Identities=15% Similarity=0.068 Sum_probs=156.3
Q ss_pred ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 228 SNDYKGGLELFAELLQR-----FPNNIHILLEMAKVDAIIG-----KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
..+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... ++..|+.+|.++-.. .++.+.+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC
Confidence 36788888888888661 1124567788899888743 678899999988776 45677788888887665
Q ss_pred ---CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CChhH
Q 008550 298 ---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK-----DERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-KRPEA 368 (561)
Q Consensus 298 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 368 (561)
+...|..+|..+... .+..+.+.++.++..| +...|..++.++...+ .+.+...++..+... +.+..
T Consensus 340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence 567899999888764 4677888888888773 6778999999988877 445555555544332 77777
Q ss_pred HHHHHHHhHHhCCCh----HHHHHHHH-HHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHH
Q 008550 369 AVIAFRGAQELRPDL----RSYQGLVH-SYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREK 436 (561)
Q Consensus 369 A~~~~~~~~~~~~~~----~~~~~l~~-~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~ 436 (561)
+...+....+..-.. .++...-. .... ..+...+...+.++.. +.++.+...+|.+|..- ..+++.
T Consensus 416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHH
Confidence 766665554443222 11111111 1111 1134445555555433 34566777777776642 235677
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHhhCCC
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIE-G--RNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~-g--~~~~A~~~~~~~~~~~~~ 484 (561)
|...|.++.... ....+++|.++..- | ....|..++.++.+....
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 777777776665 66777777776542 1 146666666666655443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0043 Score=57.17 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHh---cCCHhHHHHHHHH-HHhcCCCCHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYIMTYMDEYAMLLKV---KCDYSKLSKLVHD-LLSIDPSRPEV 319 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~ 319 (561)
++++...+-.+|....+|+.-++..+.+-.. -+..+.+...+|.++.+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3566677777899999999999999887776 45566778889999998 8999999999988 56667788999
Q ss_pred HHHHHHHHHh----------cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 320 FVALSVLWER----------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 320 ~~~l~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
+..+|.+|.. ...++|+.+|.++...+|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 9999988843 2356788888888887754 3334455555555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0011 Score=57.73 Aligned_cols=147 Identities=22% Similarity=0.210 Sum_probs=94.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.-+..|......|++.+|...|..++...|.+. ++...++.|++..|+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-------------------------------~~~~~la~~~l~~g~~ 184 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENS-------------------------------EAKLLLAECLLAAGDV 184 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-------------------------------hHHHHHHHHHHHcCCh
Confidence 456677788999999999999999999986543 5788899999999999
Q ss_pred HHHHHHHhcCCCcccchhHHHHHH--HHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 125 KAAIVEMEGIPSKARNLQMSLLMA--KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 125 ~~A~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
+.|..++..++....+....-..+ .++.+.....+. ..+++.+..+|++.++.+.+
T Consensus 185 e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~l--------------------- 242 (304)
T COG3118 185 EAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALAL--------------------- 242 (304)
T ss_pred HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHH---------------------
Confidence 999999999876643333322222 233333333322 23444556667666666555
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP--NNIHILLEMAKVDAIIG 263 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~ 263 (561)
|..+...|+.++|.+.+-.+++.+. .+..+...+-.++...|
T Consensus 243 -------------------A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 243 -------------------ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred -------------------HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5556666666666666666665533 23344444444444444
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00034 Score=65.99 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (561)
.+..|......+..+..+|+..+|..++..++-..|.. ..++..+|.++.+.|...+|--++..++...|....-++.
T Consensus 209 ~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~ 288 (886)
T KOG4507|consen 209 NTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYT 288 (886)
T ss_pred CchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccccccee
Confidence 34556655555666677899999999999998876544 3467788999999999999988888888877777777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
++.++.+.+.+......|..+.+..|..
T Consensus 289 l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 289 LGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 9999999998888888888887777765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.059 Score=60.42 Aligned_cols=365 Identities=13% Similarity=0.047 Sum_probs=194.2
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHH
Q 008550 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA 127 (561)
Q Consensus 48 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 127 (561)
.+|.+-++.|.|.+|+.++++- .. .+.. ..-....++.+-.+|...++++.-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~---~ek~------------------------~~~~e~l~fllq~lY~~i~dpDgV 1439 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS---TEKE------------------------KETEEALYFLLQNLYGSIHDPDGV 1439 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-cc---ccch------------------------hHHHHHHHHHHHHHHHhcCCcchh
Confidence 7899999999999999999985 11 1100 001123444455599999999887
Q ss_pred HHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 128 IVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 128 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
.-........| ............|++..|..+|+++++.+|+....+.+........+........+.......
T Consensus 1440 ~Gv~~~r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-- 1513 (2382)
T KOG0890|consen 1440 EGVSARRFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-- 1513 (2382)
T ss_pred hhHHHHhhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc--
Confidence 66655311111 233344456678999999999999999999977666655554444555444443332221111
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhhCC--
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE-----AILNFEKVRSIDP-- 280 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-----A~~~~~~~~~~~~-- 280 (561)
......|...-.+| ..+.++++.-..... ..+..+..+.. +|.+.....+-+. .++..+..+ ..|
T Consensus 1514 -se~~~~~~s~~~ea--aW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~ls 1585 (2382)
T KOG0890|consen 1514 -SEEVDELNSLGVEA--AWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLS 1585 (2382)
T ss_pred -CHHHHHHHHHHHHH--Hhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHH
Confidence 11222333332222 356677776665544 22222222221 5555554433221 111111110 111
Q ss_pred ------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHh---c
Q 008550 281 ------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIR---I 345 (561)
Q Consensus 281 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~---~ 345 (561)
.....+..+..++... +.+.. .+......+++ .+-|.+....-.. .+..+-+-.+++++- .
T Consensus 1586 a~s~~~Sy~~~Y~~~~kLH~l~-el~~~---~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~ 1661 (2382)
T KOG0890|consen 1586 ACSIEGSYVRSYEILMKLHLLL-ELENS---IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRM 1661 (2382)
T ss_pred HhhccchHHHHHHHHHHHHHHH-HHHHH---HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhc
Confidence 0011111111111110 11111 11111112221 2233333322222 333444444444332 2
Q ss_pred c----CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCC----
Q 008550 346 D----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQS---- 416 (561)
Q Consensus 346 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~---- 416 (561)
+ ..-.+.|...|++....|.++.|...+-.+.+.. ...++...|..++..|+-..|+..+++.++.+ |+.
T Consensus 1662 ~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1662 RSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred cccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc
Confidence 2 2235778888888888888888888887777665 33567778888888899889998888888644 221
Q ss_pred ------------HHHHHHHHHHHhhhcCCh--HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 417 ------------AKALKLVGDVHASNASGR--EKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 417 ------------~~~~~~l~~~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
..+...++...... +++ ..-+++|..+.+..|....-++.+|.
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es-~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEES-GNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 22334444444444 554 45677888888888866666666663
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=45.60 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
+.+|+.+|.+++.+|+|++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 358999999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0022 Score=52.12 Aligned_cols=119 Identities=20% Similarity=0.166 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHCCCCHH---HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHH
Q 008550 401 EALYAAREAMKAMPQSAK---ALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSL 474 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 474 (561)
+.....++....+|.+.. ....++..+... +++++|+..++.++....+. .-+-.+++.+....|.+++|+..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~-~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEA-NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455555566666655433 345677778887 99999999999888654332 23557899999999999999998
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 475 LERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 475 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
++......-.+......|+++...|+..+|+..|++++..+++.+.
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 8875443333356778899999999999999999999999855443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.3e-05 Score=44.72 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIV 76 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (561)
+++++.+|.+++..|+|++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999998753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.038 Score=56.51 Aligned_cols=406 Identities=15% Similarity=0.098 Sum_probs=218.7
Q ss_pred HHHHHHHH-hhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 5 KEQITALI-DQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 5 ~~~~~~~~-~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
++.+..++ ...+++.|....+.....+.. ..-.+.+....+.++.++++.+... |....++.++.....+
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~------ 133 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG------ 133 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC------
Confidence 34455555 667899999999988887765 2235677888889999999999888 9999999998752211
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHH--HHHHHhcCCHHHHHHHHhcCCCc---ccchhHH----HHHHHHHHhc
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKI--ASCHFALGETKAAIVEMEGIPSK---ARNLQMS----LLMAKLYRNS 154 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~A~~~l~~~~~~---~~~~~~~----~~l~~~~~~~ 154 (561)
.......+.+ ....+..+++..|+..++.+... ..++.+. +..+.+....
T Consensus 134 ---------------------~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 134 ---------------------HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred ---------------------chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 0111222222 33333448999999999885322 2333322 3446777778
Q ss_pred CChhhHHHHHHHHHhcCC----------CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 155 RHNRGAVACYKECLRHCP----------FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 155 ~~~~~A~~~~~~~l~~~p----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
+..++++...+++..... ....++..+. .-.+
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll--------------------------------------~l~~ 234 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL--------------------------------------DLCC 234 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH--------------------------------------HHHH
Confidence 888888888888743221 1222332222 2233
Q ss_pred HHHccCHHHHHHHHHHHH---Hh---CC---C---C------------------------------HHHHHHHHHHHHHh
Q 008550 225 CIASNDYKGGLELFAELL---QR---FP---N---N------------------------------IHILLEMAKVDAII 262 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~---~~---~~---~---~------------------------------~~~~~~la~~~~~~ 262 (561)
....|+++.+...++++- +. .| . + .-++..-|......
T Consensus 235 ~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~ 314 (608)
T PF10345_consen 235 SLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYK 314 (608)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhc
Confidence 334444433333322221 10 10 0 0 01122224444445
Q ss_pred CCHHHHHHHHHHHHhhC-------CCC-------------------hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC---
Q 008550 263 GKNDEAILNFEKVRSID-------PYI-------------------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID--- 313 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 313 (561)
+..++|.+++.++++.- |.. ....+..+.+..-.+++..|......+....
T Consensus 315 ~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 394 (608)
T PF10345_consen 315 GSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRS 394 (608)
T ss_pred cCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcC
Confidence 55556666655555421 100 0123444556667778877777777665432
Q ss_pred CC------CHHHHHHHHHHHHh-cCHhHHHHHHH--------HHHhccCCCh---hHHHHHHHHHHhcCChhH----HHH
Q 008550 314 PS------RPEVFVALSVLWER-KDERGALSYAE--------KSIRIDERHI---PGYIMKGNLLLSMKRPEA----AVI 371 (561)
Q Consensus 314 ~~------~~~~~~~l~~~~~~-~~~~~A~~~~~--------~~~~~~~~~~---~~~~~l~~~~~~~~~~~~----A~~ 371 (561)
|. .+..++..|..+.. |+.+.|...|. .+....+.+. -+..++..++...+.-.. ...
T Consensus 395 ~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~ 474 (608)
T PF10345_consen 395 PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNE 474 (608)
T ss_pred ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHH
Confidence 22 25567777777777 88888888887 2223333222 122344455544443322 333
Q ss_pred HHHHhHHh---CCCh--HHHH-HHHHHHH--hcCCHHHHHHHHHHHHHHC-C---C---CHHHHHHHHHHHhhhcCChHH
Q 008550 372 AFRGAQEL---RPDL--RSYQ-GLVHSYL--QFSKVKEALYAAREAMKAM-P---Q---SAKALKLVGDVHASNASGREK 436 (561)
Q Consensus 372 ~~~~~~~~---~~~~--~~~~-~l~~~~~--~~~~~~~A~~~~~~~~~~~-p---~---~~~~~~~l~~~~~~~~~~~~~ 436 (561)
.++..-.. .|+. ..+. .+..++. ..-...++...+..+++.. . + ...++..++..++ . |+..+
T Consensus 475 l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~-~~~~e 552 (608)
T PF10345_consen 475 LLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-E-GDVGE 552 (608)
T ss_pred HHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-c-CCHHH
Confidence 33332211 1211 2222 2222221 1223346666666666544 1 1 1335566777776 3 78777
Q ss_pred HHHHHHHHHHhCCCC---HH-HH-----HHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 437 AKKFYESALRLEPGY---LG-AA-----LALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 437 A~~~~~~a~~~~p~~---~~-~~-----~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.......+....+.. .. .| ..+...+...|+.++|.....+...
T Consensus 553 ~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 553 QAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 666666666543332 33 33 2355668888999999888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=72.67 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=100.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
+...+..+.|+.|+..|.++++.+|+.+..+-..+.++.+.+++..|+..+.++++.+|....+++..|......+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
|...|+......|+++.+...+..+-.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999988877766543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.026 Score=63.04 Aligned_cols=363 Identities=16% Similarity=0.159 Sum_probs=208.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCc--cc--chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCc
Q 008550 113 KIASCHFALGETKAAIVEMEGIPSK--AR--NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (561)
Q Consensus 113 ~~a~~~~~~~~~~~A~~~l~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (561)
.+|.+-.+.|.|.+|+-++++-... +. ....++.+-.+|...++++.-..+... ...+|.-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl-------------- 1452 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSL-------------- 1452 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccH--------------
Confidence 5677777788888888888773211 11 122334444577777777665555443 1112210
Q ss_pred ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 008550 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (561)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 268 (561)
..+-......|++..|..+|+++++.+|+....+...-......|.++..
T Consensus 1453 ------------------------------~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1453 ------------------------------YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred ------------------------------HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHH
Confidence 11133444569999999999999999999887777777788888999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHH-HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHh
Q 008550 269 ILNFEKVRSIDPYIMTYMDEYAM-LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIR 344 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~ 344 (561)
+...+-.....++...-+..++. +.+..++++.-..+.. ..+.....+.. +|.+... . |.-.-.+..+.+.+
T Consensus 1503 i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~ 1578 (2382)
T KOG0890|consen 1503 ILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRE 1578 (2382)
T ss_pred HhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHH
Confidence 88887776666666555554443 4477778777666554 22222222221 5555544 1 11111111111111
Q ss_pred --ccC--------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 345 --IDE--------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 345 --~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
..| .....+-.+..++.. .+.+..++.+ ....++. ..|.+....-....+..+-+-.+++
T Consensus 1579 ~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~~l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RR 1654 (2382)
T KOG0890|consen 1579 LVIENLSACSIEGSYVRSYEILMKLHLL-LELENSIEEL---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRR 1654 (2382)
T ss_pred HhhhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHh---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHH
Confidence 111 001111111111111 0111111111 1111211 1233332222222223444444444
Q ss_pred HHH---HCC----CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 409 AMK---AMP----QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 409 ~~~---~~p----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
++- .+| .-.+.|...|.+.... |.++.|...+-+|.+.. -+.+....|..++..|+...|+..+++.++.
T Consensus 1655 s~l~~~~~~~~~~~~ge~wLqsAriaR~a-G~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1655 SMLDLRMRSNLKSRLGECWLQSARIARLA-GHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHhc-ccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 432 222 3377888999998887 99999999998888776 4678889999999999999999999999865
Q ss_pred C-CC----------h-------HHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 482 W-AD----------D-------SLHVKLAQVFAATNML--QEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 482 ~-~~----------~-------~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
+ |+ . .+...++......|+. .+-++.|..+.+..|.....++.++..+.+
T Consensus 1732 ~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1732 NFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred hcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 4 22 1 2345555666666664 345688999999999887777777755543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=56.60 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHH--------hcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCC
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECL--------RHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (561)
...++..-|.-+++.|+|.+|...|+.++ +..|..++. ..|...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-~eLdk~--------------------------- 228 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-LELDKM--------------------------- 228 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-HHHHHh---------------------------
Confidence 34566778888899999999999998886 334555543 233111
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
..-.++..+.|+...|+|-++++....++...|.+..+++..|.++...=+.++|...|.++++++|.-..+
T Consensus 229 --~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 229 --ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred --hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 011223348899999999999999999999999999999999999999999999999999999999876544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3e-05 Score=44.24 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357778888888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0077 Score=57.27 Aligned_cols=285 Identities=15% Similarity=0.035 Sum_probs=138.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP--------YIMTYMDEYAML 292 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~ 292 (561)
+.+..+.|+++. +.+.+... .+.+...+..+......|+++++..+.+++...-- ......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 667778888887 33333332 23346666667777788888888888877765321 111111111112
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCHh--HHHHHHHHHHhc----cCCChhHHHHHHHHHHh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSR----PEVFVALSVLWERKDER--GALSYAEKSIRI----DERHIPGYIMKGNLLLS 362 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~--~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 362 (561)
+....+.+++..+....... +.. ...|...-.... .+++ +-+-.++..+-. .......+...+.+..+
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~-~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQ-DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 22223333333333211100 000 001111110000 1111 111111121111 33445677888888888
Q ss_pred cCChhHHHHHHHHhHHhCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCH--HHHHHHHHHHh-hhcCC
Q 008550 363 MKRPEAAVIAFRGAQELRPD-----LRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSA--KALKLVGDVHA-SNASG 433 (561)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~--~~~~~l~~~~~-~~~~~ 433 (561)
.|.++.|...+.++....+. ....+..+.+....|+..+|+..++..+... .... .....+..... .....
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 88888888888887775432 2346667888888888888888888777621 1110 00000000000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcC-------
Q 008550 434 REKAKKFYESALRLEPGYLGAALALAELHVIE------GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN------- 499 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g------- 499 (561)
.......... .....++..+|...... +..+++...|..+++..|+. ..|+.+|..+...=
T Consensus 239 ~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~ 313 (352)
T PF02259_consen 239 SSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREK 313 (352)
T ss_pred cccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 0000000000 00123444455554444 66666677777777666655 55655555554331
Q ss_pred ----------CHHHHHHHHHHHHhcCCc
Q 008550 500 ----------MLQEALSHYEAALRINSQ 517 (561)
Q Consensus 500 ----------~~~~A~~~~~~al~~~p~ 517 (561)
-...|+..|-+++...|+
T Consensus 314 ~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 314 EESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124477888888888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0079 Score=51.25 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=70.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh-HHHHH
Q 008550 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS-KLSKL 305 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~ 305 (561)
......|+++...++..+|.+-.+|...-.++..++ +..+-++++..+++.+|.+..+|...-.+....|++. .-+..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 344556666666666666666555555444444332 3455555666666666666665555555555555554 44555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHH
Q 008550 306 VHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM 355 (561)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 355 (561)
.+.++..+..+-.+|...-.+... ++++.-+.+..+.++.+-.+-.+|..
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 555555555555555555555555 55555555555555555444444433
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.4e-05 Score=71.24 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~ 502 (561)
+.-.... +.++.|+..|.++++++|++...+.+.+..+.+.+++..|+.-+.++++.+|.. ..|+..|.+....+++.
T Consensus 11 an~~l~~-~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKD-KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred Hhhhccc-chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3444444 788888888888888888888888888888888888888888888888888876 78888888888999999
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 503 EALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 503 ~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+|...|+....+.|+++.+...+..+.....
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888776543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00048 Score=57.63 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=74.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQ--------RFPNNI----------HILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
....|+-++..|+|.+|...|..++. ..|.++ ..+.++++|+...|+|-++++....++..+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 44568999999999999999998873 245544 345566777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (561)
|.+..+++..|......=+..+|..-|.++++.+|.-..
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 777777777777777777777777777777777765543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0013 Score=64.11 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=80.9
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 302 (561)
...+.+.|.+++....+..|+.+-.++..|+++...|+.++|++.|++++.....-+ -.++.++.++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 346678899999999999999999999999999999999999999998875332222 3456677777777777777
Q ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHHh-cCH-------hHHHHHHHHH
Q 008550 303 SKLVHDLLSIDPSRPEVF-VALSVLWER-KDE-------RGALSYAEKS 342 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~-------~~A~~~~~~~ 342 (561)
..++.++.+.+.-+...| +..|.++.. ++. ++|...+.++
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777776554443333 333444444 555 4555555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=44.48 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 008550 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAI 269 (561)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 269 (561)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555566666666666666666666655554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.012 Score=55.99 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 486 SLHVKLAQVFAAT------NMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 486 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++..+|...... +..+++...|..+++++|+...++..++.....+-
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 5677888888777 89999999999999999999999999999887654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0018 Score=56.46 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 44445555555555555555555555555555555555555555555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.2e-05 Score=43.67 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+++.+|.++...|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357777888888888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.026 Score=51.16 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=107.5
Q ss_pred HHhcCChhhHHHHHHHHHhcC-CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc
Q 008550 151 YRNSRHNRGAVACYKECLRHC-PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN 229 (561)
Q Consensus 151 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (561)
...+|+++.|..++.++-... ..++.....++.++ |.-|......+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~---------------------------------yn~G~~l~~~~ 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC---------------------------------YNIGKSLLSKK 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH---------------------------------HHHHHHHHHcC
Confidence 346889999999999987655 44455555554443 34488888888
Q ss_pred -CHHHHHHHHHHHHHhC----C---CC-------HHHHHHHHHHHHHhCCHH---HHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 230 -DYKGGLELFAELLQRF----P---NN-------IHILLEMAKVDAIIGKND---EAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 230 -~~~~A~~~~~~~~~~~----~---~~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+++.|..+++++.+.. + .. ..++..++.+|...+.++ +|...++.+-...|+.+..+...-.
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~ 129 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE 129 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999999988762 1 11 346677888888877654 4556666666677887777766666
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH-HHHH--HHhcCHhHHHHHHHHHHh
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA-LSVL--WERKDERGALSYAEKSIR 344 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~--~~~~~~~~A~~~~~~~~~ 344 (561)
++...++.+.+.+.+.+++...+-....+.. +..+ +.......+...+...+.
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 7777888999999998888765522222222 2222 122455566676666654
|
It is also involved in sporulation []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.078 Score=53.31 Aligned_cols=277 Identities=17% Similarity=0.076 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHhcC---
Q 008550 231 YKGGLELFAELLQRFPNNIHILLEMAKVDAII-----GKNDEAILNFEKVRSI-----DPYIMTYMDEYAMLLKVKC--- 297 (561)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~--- 297 (561)
...|..+++.+.+. .+..+...+|.+|..- .+.+.|+.+|+.+.+. .-..+.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677888777554 4567778888887764 5899999999998771 1125567888999998853
Q ss_pred --CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc----CChh
Q 008550 298 --DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK----DERGALSYAEKSIRIDERHIPGYIMKGNLLLSM----KRPE 367 (561)
Q Consensus 298 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 367 (561)
+...|..++.++... .++...+.+|.++..| +...|..+|..+... .+..+.+.++.+|..- .+..
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 677899999988775 4677888899988883 467999999998754 4677888888888643 4788
Q ss_pred HHHHHHHHhHHhCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHhhh---cCChHHHHH
Q 008550 368 AAVIAFRGAQELRPDLRSYQGLVHSYL-QFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHASN---ASGREKAKK 439 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~---~~~~~~A~~ 439 (561)
.|..++.++.+..+ ..+...++..+. ..+.++.+...+....+..-..+ ..+.......... ..+...+..
T Consensus 382 ~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN-PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHHccC-hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999999988873 223333333332 22777777666655544322221 1111111111111 123456666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHc-C--CHHHHHHHHHHHH
Q 008550 440 FYESALRLEPGYLGAALALAELHVIE----GRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-N--MLQEALSHYEAAL 512 (561)
Q Consensus 440 ~~~~a~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al 512 (561)
.+.++.. ..++.+...+|.+|+.- .+++.|...|.++.... ....+++|.++..- | ....|..+|.++.
T Consensus 461 ~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 461 LYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 6666543 45677888888888765 35888999999888777 77778888877542 1 2678888888887
Q ss_pred hcCCcc
Q 008550 513 RINSQN 518 (561)
Q Consensus 513 ~~~p~~ 518 (561)
..++..
T Consensus 537 ~~~~~~ 542 (552)
T KOG1550|consen 537 EEDSRA 542 (552)
T ss_pred hcCchh
Confidence 766544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=51.71 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=50.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----------------------IHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
..|......++...++..+.+++...... ..+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 34566667788889999999988754322 12233344445555555555555555555
Q ss_pred hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
.+|.+..++..+..++...|+..+|+..|+++
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55555555555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00046 Score=60.53 Aligned_cols=116 Identities=23% Similarity=0.269 Sum_probs=97.9
Q ss_pred CCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHH
Q 008550 36 ETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA 115 (561)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a 115 (561)
.-.+...++.+-.-|+-||+.++|..|+..|.+.+.....+|+- ...++...|
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl---------------------------navLY~NRA 126 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL---------------------------NAVLYTNRA 126 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH---------------------------HHHHHhhHH
Confidence 33567788889999999999999999999999999987544421 245788899
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHH
Q 008550 116 SCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 178 (561)
.|.+..|+|..|+.-+... ...|.+..+++.=+.+++.+.++.+|+..++..+..+.....+.
T Consensus 127 Aa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 127 AAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999884 55699999999999999999999999999999988776544433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.12 Score=52.50 Aligned_cols=228 Identities=13% Similarity=0.014 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh--
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--R-------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-- 350 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-- 350 (561)
|......+.......++.+|..++.++...-|. . .+..-..+.+... |++++|.+..+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 455667788888899999999998887665433 1 1233344455555 999999999999998877653
Q ss_pred ---hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HH--HHHHHHHHHhcCCH--HHHHHHHHHH----HHHCC
Q 008550 351 ---PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RS--YQGLVHSYLQFSKV--KEALYAAREA----MKAMP 414 (561)
Q Consensus 351 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~--~~~l~~~~~~~~~~--~~A~~~~~~~----~~~~p 414 (561)
.+....|.+..-.|++++|..+...+.+..... .. ....+.++..+|+. .+....+... +...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456778899999999999999999888774332 22 34557778888833 3333333332 22334
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALR----LEPGYLG---AALALAELHVIEGRNGDAVSLLERYLKDWADD-- 485 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~----~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 485 (561)
-........+.++... -+++.+..-..+.++ ..|.... +...++.+.+..|+.++|...+........++
T Consensus 575 ~~~f~~~~r~~ll~~~-~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 575 RHEFLVRIRAQLLRAW-LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred cchhHHHHHHHHHHHH-HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333333333333333 234444444444443 3333322 23478999999999999999998877654322
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 486 ------SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 486 ------~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.++..........|+.+.|..+..+.
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 23333344556679999998888773
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=41.28 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+|+.+|.+|..+|++++|.++|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357778888888888888888888888887753
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0031 Score=50.97 Aligned_cols=60 Identities=27% Similarity=0.334 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (561)
+...++..+... |++++|+..+++++..+|.+..++..+..++...|+..+|+..|++..
T Consensus 64 ~~~~l~~~~~~~-~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEA-GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444445554 666666666666666666666666666666666666666666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.085 Score=55.44 Aligned_cols=329 Identities=13% Similarity=-0.029 Sum_probs=160.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHH
Q 008550 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225 (561)
Q Consensus 146 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (561)
....++...+.|+.|+..|++.-...|+..+.+..+-++++.. +.++...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ 529 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITL------------------------------LEKASEQ 529 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHH------------------------------HHHHHhc
Confidence 3456777888999999999999999998877665554443210 0001111
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC-----CHh
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-----DYS 300 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 300 (561)
-....+++|+..|+++ ...|.-|--|...|.+|.+.|++++-++++..+++..|.+|..-...-.+..++. +-.
T Consensus 530 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (932)
T PRK13184 530 GDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRR 608 (932)
T ss_pred CChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 1112345555555543 2233444445555556666666666666666666655555432111111111000 001
Q ss_pred HHHHHHHHHHhcCCCC-----------------------------HHHH---HHHHHHHHhcCHhHHHHHHHHHHhccCC
Q 008550 301 KLSKLVHDLLSIDPSR-----------------------------PEVF---VALSVLWERKDERGALSYAEKSIRIDER 348 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~-----------------------------~~~~---~~l~~~~~~~~~~~A~~~~~~~~~~~~~ 348 (561)
.|....--++...|.. .... +.+-..+..|..---...++++....|-
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (932)
T PRK13184 609 EALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY 688 (932)
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH
Confidence 1111111111111111 1111 1111122225544555666666665543
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-----CCChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDLR---------SYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.+....-.+...+|.++-+.......-+. .|..- .+..-..+......++++.+.+.. ..|
T Consensus 689 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 763 (932)
T PRK13184 689 --RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDP 763 (932)
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCH
Confidence 55555555667788887665554443321 11111 122223333444456666553332 222
Q ss_pred CCHHHH-HHHHHHHhhhcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CChH
Q 008550 415 QSAKAL-KLVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAVSLLERYLKDW---ADDS 486 (561)
Q Consensus 415 ~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 486 (561)
...... ...+.-.... ++.+. +..+.+.+...+. +........+.|....++++|-+.+...-... ..+.
T Consensus 764 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (932)
T PRK13184 764 TLILYAFDLFAIQALLD-EEGES-IIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSE 841 (932)
T ss_pred HHHHHHHHHHHHHHHHh-ccchH-HHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccch
Confidence 222111 1111111111 22222 2222222222221 12234456778888899999998885432211 2227
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
++...|..+...++-+-|..+|..+.
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 842 AFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 88888988899999999999998887
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.054 Score=49.81 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=91.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cC
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII----GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KC 297 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 297 (561)
...+++..+...+.++... .++.....++.+|..- .+..+|..+|..+ ....++.+.+.+|.++.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 3456777777777776552 2235666677766653 3567777777743 344566677777777766 34
Q ss_pred CHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhc--------CHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cC
Q 008550 298 DYSKLSKLVHDLLSIDPSR-PEVFVALSVLWERK--------DERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MK 364 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 364 (561)
+..+|..+|+++....-.. ......++.++..| +...|...|.++-... ++.+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 7777777777777654333 23366666666553 2224555555554443 44555555555533 22
Q ss_pred ChhHHHHHHHHhHHhCCChHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRPDLRSYQGLV 390 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~ 390 (561)
++.+|..+|.++.+... ..+.+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 45555555555555444 33344444
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.062 Score=49.42 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCC--hHHHHHHHHHHHhcC-------C
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPD--LRSYQGLVHSYLQFS-------K 398 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-------~ 398 (561)
..+|..+|..+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+.... ..+...++.+|..-+ +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 444555555222 22334445555555544 22555555555555544222 122334444443321 1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
...|...|.++.... ++.+...+|.+|..- ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 235566666555543 566666666666541 1255667777777666554 55566666 555444
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0028 Score=55.86 Aligned_cols=93 Identities=20% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
-|.-|++.++|..|...|.+.+...-.+ ...|.+.+.+.... |+|..|+....+++..+|.+..+++.-|.|++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3444455555555555555555433222 33444455555544 555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHhhC
Q 008550 465 EGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~ 482 (561)
+.++.+|..+++..+..+
T Consensus 166 Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 555555555555544443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=54.71 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 236 ELFAELLQRFPNNIHILLEMAKVDAIIGK------------NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.-|++.++.+|.+..+|..+....-..-. .+.-+.++++|++.+|++...+..+..+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888999999999988876554422 456678889999999988888888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh----cCHhHHHHHHHHHHh
Q 008550 304 KLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIR 344 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~ 344 (561)
+.+++++..+|+++..|...-..... -.+......|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 88999999999988888766654433 245677777777665
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00025 Score=40.32 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
++++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999873
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.095 Score=47.55 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=36.1
Q ss_pred HHHHHHHHHHh-cCHh---HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC
Q 008550 319 VFVALSVLWER-KDER---GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 380 (561)
++..++.++.. +.++ +|....+.+....|+.+..+...-.++.+.++.+.+.+.+.+++...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44555555555 4333 45555555555566666666555555555667777777777766553
|
It is also involved in sporulation []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=63.10 Aligned_cols=91 Identities=15% Similarity=0.006 Sum_probs=60.2
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
+..|.++.|+..|..++.++|.....+...+.++.+. ++...|++.+..+++++|+...-+-..+.....+|++.+|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl-~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL-KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeec-cCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 4456666666666666666666666666666666666 666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCh
Q 008550 474 LLERYLKDWADD 485 (561)
Q Consensus 474 ~~~~~~~~~~~~ 485 (561)
.+..+.+++-+.
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 666666655443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.21 Score=50.88 Aligned_cols=302 Identities=14% Similarity=0.051 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL 121 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 121 (561)
..+.+..-+..+...|...+|+..--.|-+- . --.+..-+.+.-+...
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-----~---------------------------~aa~lle~~~~~L~~~ 393 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDP-----E---------------------------MAADLLEQLEWQLFNG 393 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCCCH-----H---------------------------HHHHHHHhhhhhhhcc
Confidence 3446666666677778888887654332111 0 0012334445566777
Q ss_pred CCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc--HHHHHHHHHHcCCcccHhHHhhc
Q 008550 122 GETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF--IEAITALAELGATPKDIISLFAQ 197 (561)
Q Consensus 122 ~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~ 197 (561)
++..--....+.++.. -.++..-...+.......++.+|..++.++...-|.. ...-..++
T Consensus 394 ~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a--------------- 458 (894)
T COG2909 394 SELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA--------------- 458 (894)
T ss_pred cchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH---------------
Confidence 7777777777777644 4566777788888888999999999988886554431 11111111
Q ss_pred cccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Q 008550 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNF 272 (561)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~ 272 (561)
. ..-+.|.+....|+.+.|.+..+.++..-|.+ ..+...+|.+..-.|++++|..+.
T Consensus 459 ----------------e--~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~ 520 (894)
T COG2909 459 ----------------E--FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALM 520 (894)
T ss_pred ----------------H--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHH
Confidence 0 11234888899999999999999999987755 456677889999999999999999
Q ss_pred HHHHhhCCC----Ch--HHHHHHHHHHHhcCCHh--HHHHHHHHH----HhcCCCCHHHHHHHHHHHHh-cCHhHHHHHH
Q 008550 273 EKVRSIDPY----IM--TYMDEYAMLLKVKCDYS--KLSKLVHDL----LSIDPSRPEVFVALSVLWER-KDERGALSYA 339 (561)
Q Consensus 273 ~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~--~A~~~~~~~----~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~ 339 (561)
..+.+.... .. .+....+.++..+|+.. +....+... +...|.+.-.....+.++.. -+++.+..-.
T Consensus 521 ~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ea 600 (894)
T COG2909 521 QQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEA 600 (894)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHh
Confidence 888876322 22 33445567778888332 222223222 12223222222222222222 2233333333
Q ss_pred HHHHh----ccCCChhH---HHHHHHHHHhcCChhHHHHHHHHhHHhC--CChH----H--HHHHHHHHHhcCCHHHHHH
Q 008550 340 EKSIR----IDERHIPG---YIMKGNLLLSMKRPEAAVIAFRGAQELR--PDLR----S--YQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 340 ~~~~~----~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~--~~~l~~~~~~~~~~~~A~~ 404 (561)
...++ ..|..... .+.++.+.+..|++++|...+......- +... + ...........|+..++..
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 33322 22322211 2356777777777777777766655542 2111 1 1122223345566666666
Q ss_pred HHHH
Q 008550 405 AARE 408 (561)
Q Consensus 405 ~~~~ 408 (561)
...+
T Consensus 681 ~l~~ 684 (894)
T COG2909 681 WLLK 684 (894)
T ss_pred HHHh
Confidence 5555
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.034 Score=52.09 Aligned_cols=152 Identities=12% Similarity=-0.039 Sum_probs=91.4
Q ss_pred CcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC-CCCCChhh
Q 008550 136 SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP-FDHLDSSR 214 (561)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 214 (561)
..|...++++.++.++..+|+.+.|..++++++-.........+.........| ..+.+ ....+..-
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g------------~~rL~~~~~eNR~f 102 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG------------NCRLDYRRPENRQF 102 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC------------ccccCCccccchHH
Confidence 458899999999999999999999999999997433211111110000000000 01111 11234555
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhCCC-----ChHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHIL-LEMAKVDAIIGKNDEAILNFEKVRSIDPY-----IMTYMD 287 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~ 287 (561)
|...+.....+.+.|-+..|.++.+-++..+|. ||-.. +.+-....+.++++--+..++........ -|...+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 666777788888899999999999999999887 66444 34444455667777666666654432111 123444
Q ss_pred HHHHHHHhcCCH
Q 008550 288 EYAMLLKVKCDY 299 (561)
Q Consensus 288 ~l~~~~~~~~~~ 299 (561)
..+.++...++.
T Consensus 183 S~aLA~~~l~~~ 194 (360)
T PF04910_consen 183 SIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHHhcCc
Confidence 555555555554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=40.92 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++.+|..+.++|++++|..+.+.+++..|+|..+......+...+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999888888776653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.16 Score=47.90 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008550 107 ENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRHCPFFIEAITALAEL 184 (561)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (561)
+..++........+.+.+.+--.++.+ +...|.+++.|..-+.-.+..+. .+.|...|.++++.+|+++..|....++
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 455777777777777778888888888 46679999999998888777665 9999999999999999999988765444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0059 Score=46.20 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-hCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 451 YLGAALALAELHVIEGR---NGDAVSLLERYLK-DWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
.....+++++++....+ ..+.+.+++..++ ..|.. +..+.++..+.+.|+|++++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35678899999988765 5678899999997 44544 788899999999999999999999999999999999998
Q ss_pred HHHHHHhcc
Q 008550 525 LERLEKQMK 533 (561)
Q Consensus 525 l~~l~~~~~ 533 (561)
...++..+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 888887764
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.035 Score=52.06 Aligned_cols=168 Identities=16% Similarity=0.076 Sum_probs=86.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH-
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE- 318 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 318 (561)
..++.+|-+.+++..++.++..+|+...|.+.+++++-.........+.....-...|. + ++--..+.+..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~-----rL~~~~~eNR~f 102 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C-----RLDYRRPENRQF 102 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c-----ccCCccccchHH
Confidence 34577899999999999999999999999888888864311000000000000000000 0 00000112222
Q ss_pred --HHHHHHHHHHh-cCHhHHHHHHHHHHhccCC-ChhHH-HHHHHHHHhcCChhHHHHHHHHhHHhCC-C----h-HHHH
Q 008550 319 --VFVALSVLWER-KDERGALSYAEKSIRIDER-HIPGY-IMKGNLLLSMKRPEAAVIAFRGAQELRP-D----L-RSYQ 387 (561)
Q Consensus 319 --~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~----~-~~~~ 387 (561)
+.+.......+ |-+..|.++.+-.+.++|. ++-.. ..+-....+.++++--+..++....... + . ...+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 22233333444 6666666666666666666 54332 2233333455566555555554433111 1 0 1234
Q ss_pred HHHHHHHhcCCH---------------HHHHHHHHHHHHHCCC
Q 008550 388 GLVHSYLQFSKV---------------KEALYAAREAMKAMPQ 415 (561)
Q Consensus 388 ~l~~~~~~~~~~---------------~~A~~~~~~~~~~~p~ 415 (561)
..+.++...++. +.|...+.+++...|.
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 455555556555 7788888888887764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00085 Score=37.75 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
++++.+|.++.+.|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36899999999999999999999999999875
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00055 Score=60.45 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=82.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
+.-.+..|.+++|++.|..++..+|.....+...+.+++.++++..|+..+..++.++|+....+-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 55667788899999999999999999999999999999999999999999999999999988888888888889999999
Q ss_pred HHHHHHHHHhcCC
Q 008550 302 LSKLVHDLLSIDP 314 (561)
Q Consensus 302 A~~~~~~~~~~~~ 314 (561)
|...+..+.+++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 9999988887653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0009 Score=37.63 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45667777777777777777777777777653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.06 Score=49.91 Aligned_cols=109 Identities=7% Similarity=-0.057 Sum_probs=65.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhcCC------------HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH
Q 008550 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCD------------YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
.-|++.++.+|.+.++|..+....-..-. .+.-+.+++++++.+|++...+..+-..... .+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45777888899999999888876544322 2344556666666666666666665555555 5666666
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHh---cCChhHHHHHHHHhHH
Q 008550 337 SYAEKSIRIDERHIPGYIMKGNLLLS---MKRPEAAVIAFRGAQE 378 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 378 (561)
+.+++++..+|+++..|...-..... .-.++.....|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 66666666666666665544333222 2234455555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.045 Score=43.64 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCc---ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 111 KYKIASCHFALGETKAAIVEMEGIPSK---ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 111 ~~~~a~~~~~~~~~~~A~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
.|.-+.-+.+.+..++|+.-|..+... ....-+.+..|.+....|+...|+..|..+-+..| .+.....++++
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARl--- 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARL--- 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHH---
Confidence 445566667789999999988887554 22344567789999999999999999998876654 23333333222
Q ss_pred cccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHH
Q 008550 188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKND 266 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 266 (561)
..+..+...|.|++.....+.+-. .+|-...+.-.+|..-++.|++.
T Consensus 137 --------------------------------raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 137 --------------------------------RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred --------------------------------HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 226667777777777666655432 24444556667777778888888
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
+|...|.++.. +...+......+.+
T Consensus 185 ~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 185 KAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 88888877765 33444444444443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.32 Score=46.08 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAAT--NMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
|+.......+-..+.+.|-+.+|...|.+...+.|.+ ..+..+.++-..+ -+...+..+|..++.....+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4444455566777788899999999999998888876 5554444443222 237888999999999999999999998
Q ss_pred HHHHHhcc
Q 008550 526 ERLEKQMK 533 (561)
Q Consensus 526 ~~l~~~~~ 533 (561)
-.....+|
T Consensus 537 ~~~e~~~g 544 (568)
T KOG2396|consen 537 MKEELPLG 544 (568)
T ss_pred HHhhccCC
Confidence 88887766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=38.09 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
++..+|.+|.+.|+|++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999977654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00088 Score=38.52 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+..+|.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777774443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.49 Score=46.72 Aligned_cols=190 Identities=11% Similarity=-0.011 Sum_probs=94.3
Q ss_pred hcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHc----------CCcc
Q 008550 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG----------ATPK 189 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----------~~~~ 189 (561)
..-..++|+..++ +...++.|.+++......-.++-|...|-++- ..|.- .....|..+. .-.|
T Consensus 675 e~vgledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~-dY~Gi-k~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG-DYAGI-KLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred HHhchHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc-cccch-hHHHHhhhhhhHHHHhHhHhhhhc
Confidence 3334566776665 34467888888888887777777777776552 12221 1111221111 1112
Q ss_pred cHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHH
Q 008550 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP--NNIHILLEMAKVDAIIGKNDE 267 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 267 (561)
+++++........ .. -+........|++-...++++..-.-.. .--.++..+|..+.....|++
T Consensus 749 ~feeaek~yld~d---------rr-----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 749 EFEEAEKLYLDAD---------RR-----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred chhHhhhhhhccc---------hh-----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111100 00 0002233334444444333332111100 113566677777777777777
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHH
Q 008550 268 AILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (561)
Q Consensus 268 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (561)
|.++|.+.-. ...++.+++....+++-..+. ..-|++...+-.+|.++.. |--++|++.|-+
T Consensus 815 A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 815 AAKYYSYCGD--------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 7777765422 234455666666655544333 3346666666677777776 777777666654
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.093 Score=50.05 Aligned_cols=90 Identities=17% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 233 GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
...+.+.......|+++...+..+..+...|+.+.|+..++..+. +.- .-.++.++.++..+.+|..|...+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444556777777777777777777777777777776665 221 12345666777777777777777777
Q ss_pred HHhcCCCCHHHHHHHH
Q 008550 309 LLSIDPSRPEVFVALS 324 (561)
Q Consensus 309 ~~~~~~~~~~~~~~l~ 324 (561)
+.+...-+.-.|..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 7665544433333333
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.63 Score=47.07 Aligned_cols=372 Identities=10% Similarity=-0.031 Sum_probs=180.3
Q ss_pred CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHH--cCCc-ccHhHHhhccccccCCCCCCCC
Q 008550 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL--GATP-KDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
+...+.+...+..|..++...|++++-...=.++....|.++..|.....- .... ++...+.....+... +..
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~----dy~ 181 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG----DYN 181 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc----ccc
Confidence 344455556666666677777777666666666666666666655443321 1111 222222222222211 112
Q ss_pred ChhhHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 211 DSSRWLHR----YVEAQCCIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 211 ~~~~~~~~----~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
....|... +-.+..+...++++....+|.+++..-.. ....+......|...-..++-+.++...+...
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 22333221 11123345557788888888888864221 13444555556666656677777777776654
Q ss_pred CCChHH----HHHHH--H-HHHhcCCHhHHHHH-------HHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHh
Q 008550 280 PYIMTY----MDEYA--M-LLKVKCDYSKLSKL-------VHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIR 344 (561)
Q Consensus 280 ~~~~~~----~~~l~--~-~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~ 344 (561)
-+.++ |.... . ......+++.+... +++.+...|....-|..+...... |++..-...+++++.
T Consensus 262 -~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 262 -LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred -chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 22111 11111 1 11223344444443 333333334334445555555555 888877888888888
Q ss_pred ccCCChhHHHHHHHHHH-hcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCCCCHHHHH
Q 008550 345 IDERHIPGYIMKGNLLL-SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSK--VKEALYAAREAMKAMPQSAKALK 421 (561)
Q Consensus 345 ~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~ 421 (561)
..+.+...|+..+...- .++-.+.+...+.+++...|-...+...+.+.+..++ ...-...+.+.+.. ...++
T Consensus 341 E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~ 416 (881)
T KOG0128|consen 341 EMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELH 416 (881)
T ss_pred hccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHH
Confidence 87777777777765442 3344445555566666666654332222222222111 11111222222211 00011
Q ss_pred HHHHHHhhh-------------cCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCh-
Q 008550 422 LVGDVHASN-------------ASGREKAKKFYESALRL-EPGYLGAALALAELHVI-EGRNGDAVSLLERYLKDWADD- 485 (561)
Q Consensus 422 ~l~~~~~~~-------------~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~- 485 (561)
+....+... ...+..|...+...... -......+...|.+... +++.+.+..+++..+......
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i 496 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI 496 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH
Confidence 111111111 12233344444433332 11112344445555443 456677777776665554444
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 486 -SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 486 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
..|+.....-...|+...++..+++++..
T Consensus 497 ag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 25666666666777777777777776654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.23 Score=48.37 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=58.2
Q ss_pred HHHHHHccCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFA----------ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~----------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
|..+...|+.++|+.+.- -.-+.+..+.+.+...+..+.....+.-|.++|.+.-. ...+..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq 781 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ 781 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence 566666677777665432 11122333445555556666666666666666665422 223344
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (561)
++...+++++|..+.++.-+.. +++++-.|+.+.. .++++|.+.|.+
T Consensus 782 lHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred heeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 5566677777766554432221 3455555665555 666666555443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.027 Score=40.44 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCC
Q 008550 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNM 500 (561)
Q Consensus 438 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 500 (561)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. .....+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666677777777777777777777777777766666665433 344444444444444
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.027 Score=41.41 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=63.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
|..++..|++-+|+++.+..+...+++. ..+..-|.++..+ +...+..+....+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl--------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL--------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH---------
Confidence 6778889999999999999998877765 3444455555433 222222222222222
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI 345 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~ 345 (561)
.+++++.++..+.|..+..++.+|.-+.. ..|++++...++++..
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 24566666666677766667777666655 6666666666666553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.52 Score=44.14 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=108.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH------HHHHHHHh--cCHhHH---HHHHHHHHhccCCCh---hHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV------ALSVLWER--KDERGA---LSYAEKSIRIDERHI---PGYIM 355 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~~--~~~~~A---~~~~~~~~~~~~~~~---~~~~~ 355 (561)
-....+.++...|.+++.-+...+|+...... .+-.+... .++.+- +..++.+-..+-+.. .-+..
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~ 384 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVF 384 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 33456788888999888888888887642111 11122221 222222 223333322222222 22344
Q ss_pred HHHHHHhcCC-hhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHH--HHHH------HHH---HCC---CCHHHH
Q 008550 356 KGNLLLSMKR-PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALY--AARE------AMK---AMP---QSAKAL 420 (561)
Q Consensus 356 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~------~~~---~~p---~~~~~~ 420 (561)
-|.-+.+.|. -++|+..++.+++..|.+-.-.+......+ ..|.+|+. .+.+ .+. +.| .+.+.-
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 5666777777 788999999999888776221111111111 11222221 1111 111 112 223333
Q ss_pred HHHH--HHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 421 KLVG--DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 421 ~~l~--~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+.++ ..++.+ |++.++.-+-.-..++.| ++.++..+|.++....+|.+|..++...
T Consensus 464 n~LaDAEyLysq-gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQ-GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4443 345556 999999998888889999 7999999999999999999999999764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.18 Score=40.27 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
+..+-...++.+++...+.-+--+.|..+..-..-|.++... |++.+|+..++.+....|..+.+.-.++.|+..+|+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 333334444555555555444444555555555555555544 555555555555444444444444444444444443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.038 Score=39.71 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhcCC
Q 008550 235 LELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCD 298 (561)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 298 (561)
+..+++.+..+|+++.+.+.+|..+...|++++|++.+-.+++.+++. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 556777788888888888888888888888888888888888887765 3444445555554444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.064 Score=42.70 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=65.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
..+....++.+++..++.-+--..|..+.+-..-|.+++..|+|.+|+..|+.+....|..+.+--.++.|+...|+..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 5556667788888888888888888888888888888888888888888888888888888888888888887777653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.65 Score=43.75 Aligned_cols=129 Identities=10% Similarity=0.027 Sum_probs=107.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
..-....|+.-.|-+-+..+++..|.+|......+.+...+|.|+.+...+..+-..-..-..+...+.+.....|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34455679999999999999999999999999999999999999999998877666544444566667778889999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
|......++...-.++++....+..... |-++++..++++.+.++|...
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999999988877888877666665666 899999999999999887643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.46 Score=46.45 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=42.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------------CCChHHHHHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-------------PYIMTYMDEY 289 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l 289 (561)
..++..|.+++|...---.+ - ..-|..+|.-....=+++-|.+.|.++..+. .....--..+
T Consensus 564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 45667777777754321111 1 1234556666566666777777666653210 0111122445
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~ 308 (561)
+.++.-.|++.+|.++|.+
T Consensus 639 A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 6666667777777776654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.018 Score=36.24 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHH
Q 008550 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 286 (561)
.++.+|..+.+.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 445566666666666666666666666666665443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.29 Score=42.28 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=118.6
Q ss_pred hCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-----CCCHH-HHHHHHHHHHh-c
Q 008550 262 IGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSID-----PSRPE-VFVALSVLWER-K 330 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~l~~~~~~-~ 330 (561)
..++++|+..|++++++.+... .++.....+.+.++++++-...|.+++..- .+..+ ....+-..... .
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4589999999999999998764 456777889999999999998888776421 11111 11111111112 4
Q ss_pred CHhHHHHHHHHHHhc--cCCChhHH----HHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------------HHHHHHHH
Q 008550 331 DERGALSYAEKSIRI--DERHIPGY----IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------------RSYQGLVH 391 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~l~~ 391 (561)
+.+--..+|+.-+.. +..+...| ..+|.+|+..++|..-.+++++.-...... +.|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 444444455543331 22333333 468999999999988887777765543211 23445567
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQ--SAKALK----LVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~----~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
+|..+++..+-...|++++..... +|...- .=|.++... |++++|-..|-.+++..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlre-g~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLRE-GEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccccc-chHHHHHhHHHHHHhcc
Confidence 777888888888888888875432 233222 223455665 88999988888888753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.1 Score=44.47 Aligned_cols=80 Identities=10% Similarity=-0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
.++..+|..+..+..+++|.++|...-.. -....++.. .++++ ++.....-|++...+-.+|.++..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHh
Confidence 45555566665555666665555443211 112222222 22222 122223345555555566666666
Q ss_pred cCChhHHHHHHHH
Q 008550 363 MKRPEAAVIAFRG 375 (561)
Q Consensus 363 ~~~~~~A~~~~~~ 375 (561)
.|.-++|.+.|-+
T Consensus 865 vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLR 877 (1189)
T ss_pred hchHHHHHHHHHh
Confidence 6666666555543
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.66 Score=41.69 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=159.5
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhc--cCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSS--AINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
+++.++.+...++++.++.+...++.-. +.+.+..-..+..+...+|+.+.+.|++.+=....+..-......+++..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 4678888999999999999888887741 11222234556778899999999999988766555544332211121111
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHH-HHHhcCCHHHHHHHHhcCCCc-c-c-----chhHHHHHHHHHHh
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS-CHFALGETKAAIVEMEGIPSK-A-R-----NLQMSLLMAKLYRN 153 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~l~~~~~~-~-~-----~~~~~~~l~~~~~~ 153 (561)
+. +-..+-. +..--+..+.-+.++...... . . ....-..+..+|..
T Consensus 87 aK--------------------------lvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d 140 (411)
T KOG1463|consen 87 AK--------------------------LVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYND 140 (411)
T ss_pred HH--------------------------HHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 10 1111111 111122233333333331111 0 0 01122457888888
Q ss_pred cCChhhHHHHHHHHHhcCC--CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCH
Q 008550 154 SRHNRGAVACYKECLRHCP--FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY 231 (561)
Q Consensus 154 ~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (561)
.++|.+|+.....+++.-. ++... | ..........|+...+.
T Consensus 141 ~~~YteAlaL~~~L~rElKKlDDK~l---L---------------------------------vev~llESK~y~~l~Nl 184 (411)
T KOG1463|consen 141 TKRYTEALALINDLLRELKKLDDKIL---L---------------------------------VEVHLLESKAYHALRNL 184 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccc---e---------------------------------eeehhhhhHHHHHHhcc
Confidence 9999999888777764221 00000 0 01123347778888888
Q ss_pred HHHHHHHHHHHHh-----CCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CChHH---HHHHHHHHHhcCC
Q 008550 232 KGGLELFAELLQR-----FPNNI--HILLEMAKVDAIIGKNDEAILNFEKVRSIDP---YIMTY---MDEYAMLLKVKCD 298 (561)
Q Consensus 232 ~~A~~~~~~~~~~-----~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~---~~~l~~~~~~~~~ 298 (561)
.+|...+..+... .|... .+-..-|..+....+|..|..+|-.+++-.. ++..+ +..+-.+-...+.
T Consensus 185 ~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 185 PKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred hhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 8888888776542 22221 2223335666666888889888888877422 11233 3333444455666
Q ss_pred HhHHHHHH--HHHHhcCCCCHHHHHHHHHHHHh---cCHhHHHHHHHHHHhccC
Q 008550 299 YSKLSKLV--HDLLSIDPSRPEVFVALSVLWER---KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 299 ~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A~~~~~~~~~~~~ 347 (561)
.++...++ +.+++....+.++....+..+.. .+|+.|+.-|..-+..+|
T Consensus 265 ~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 265 PDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 66654444 34455555666777777777765 677788877777766554
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.02 Score=50.09 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
.|.-....|+.++|..+|+.++...|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 35666777888888888888888888888888888888888888888888888888888888877766544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.059 Score=46.21 Aligned_cols=87 Identities=20% Similarity=0.131 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCC-----h--HHHHH
Q 008550 432 SGREKAKKFYESALRL----EPGY---LGAALALAELHVIEGRNG-------DAVSLLERYLKDWAD-----D--SLHVK 490 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~----~p~~---~~~~~~la~~~~~~g~~~-------~A~~~~~~~~~~~~~-----~--~~~~~ 490 (561)
..+++|++.|.-|+-. .+.. ...+..+||+|...|+.+ .|...|+++++.... + .+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4456666666655432 1111 345677788888888744 455555555544322 1 57788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+|.+..+.|++++|..+|.+++.....+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999988864433
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=50.91 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 459 (561)
.-..+.|+.++|...|+.++.+.|++++++..+|...... ++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3345667777777777777777777777777777777666 6777777777777777777766665543
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.7 Score=44.12 Aligned_cols=406 Identities=13% Similarity=0.070 Sum_probs=225.0
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHH--HHH
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA--SCH 118 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a--~~~ 118 (561)
.....+..+-..+.+.|++++-...=.++.++.|-.| .++.... ...
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-------------------------------~lWl~Wl~d~~~ 159 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-------------------------------HLWLEWLKDELS 159 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-------------------------------HHHHHHHHHHHh
Confidence 3344556666667777777766666666666655433 1222211 122
Q ss_pred -HhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHH-------hcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc
Q 008550 119 -FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR-------NSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD 190 (561)
Q Consensus 119 -~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 190 (561)
...++..++...+++....-.++..|...+.... ..++++.-...|.+++..--....
T Consensus 160 mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-------------- 225 (881)
T KOG0128|consen 160 MTQSEERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-------------- 225 (881)
T ss_pred hccCcchhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc--------------
Confidence 2235666677777775555555555544444433 345677777777777654321111
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHH--H-HHHHhC
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH----ILLEMA--K-VDAIIG 263 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la--~-~~~~~~ 263 (561)
.....|..+.-.-..+...-..++-+.++...+... -+.. .+.... . ......
T Consensus 226 -------------------~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~ 285 (881)
T KOG0128|consen 226 -------------------EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETK 285 (881)
T ss_pred -------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhc
Confidence 011112222111233333333355555555555432 1111 111111 1 111233
Q ss_pred CHHHHHHH-------HHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCHhH
Q 008550 264 KNDEAILN-------FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERG 334 (561)
Q Consensus 264 ~~~~A~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 334 (561)
+++.|... +.+.++..|.....|..+.......|....-...++++....+.+...|...+..... +-...
T Consensus 286 ~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~ 365 (881)
T KOG0128|consen 286 KLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQR 365 (881)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccc
Confidence 44444443 4444555555556677778888888998888888999998888889999888877765 66667
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCChh-HHHHHHHHhHHhC----CChHHHHHHH-------HHHHhcCCHHHH
Q 008550 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE-AAVIAFRGAQELR----PDLRSYQGLV-------HSYLQFSKVKEA 402 (561)
Q Consensus 335 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~----~~~~~~~~l~-------~~~~~~~~~~~A 402 (561)
+...+-+++...|.....|...-..+.+.+... .-...+.+.+... -+.-.+.... ..-.....+..|
T Consensus 366 ~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A 445 (881)
T KOG0128|consen 366 GVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHA 445 (881)
T ss_pred cccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 777788888888776665544333333333222 1222233322210 0000000000 000111234455
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 403 LYAAREAMKA-MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 403 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
...|...... .......+...|.+.....++.+.++.++...+.....+.. .|+....+-...|+...+..+++++..
T Consensus 446 ~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 446 WEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHh
Confidence 5555554443 22245566677777777668889999999887766555544 778888888888999999999988887
Q ss_pred hCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 481 DWADD----SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 481 ~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
...++ .++..+-......|.++....+-.+.
T Consensus 526 ~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 526 QVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred cCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 54332 55555666666677777666555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.069 Score=47.48 Aligned_cols=75 Identities=13% Similarity=0.005 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.++-.++.+.++++.|+.+.+..+...|++ .-+.-.|.+|.++|.+..|...++..++..|+++.+..-..++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 445556666666667776666666666665 445556777777777777777777777777777766555555543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.39 Score=37.64 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
...++++++...+..+--+.|+.+..-..-|.++... |++.+|+..++...+..+..+...-.++.|+.-+|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r-g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR-GNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc-CCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3455555555555555555566666655666666655 666666666666555555555555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=32.61 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
++..+|.++...|++++|..+|+++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777777664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0096 Score=32.95 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
..++.+|.+++..|++++|+..|+++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 36789999999999999999999999998753
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.09 Score=46.76 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
..++-.++...++++.|+.+.+.++...|+++.-+...|.+|.+. |.+..|...++..++..|+++.+-.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 445666777777888888888888888888777777778887777 77788888787777777777665443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.13 Score=37.91 Aligned_cols=103 Identities=13% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTY---MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (561)
+|.-++..|++-+|+++.+..+...+++... +..-|.++..+ +......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence 3556677777777777777777777666533 23333333222 112221222222222
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
.+++++.++..+.|..+..++.+|.-+-....|+++....++++..
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5788899999999999999999999888888899999999988876
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.85 Score=39.55 Aligned_cols=185 Identities=9% Similarity=0.031 Sum_probs=99.7
Q ss_pred cCHhHHHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhHHh-------CCChHHHHHHHHHHHhcCC
Q 008550 330 KDERGALSYAEKSIRIDERHI----PGYIMKGNLLLSMKRPEAAVIAFRGAQEL-------RPDLRSYQGLVHSYLQFSK 398 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 398 (561)
.++++|+..|++++++.+... .++..+..+.++++++++-...|.+.+.. +-+..+...+...-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 455666666666666665443 33445556666677776666666655432 1111222222222223333
Q ss_pred HHHHHHHHHHHHHH--CCCCHHHH----HHHHHHHhhhcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHH
Q 008550 399 VKEALYAAREAMKA--MPQSAKAL----KLVGDVHASNASGREKAKKFYESALRLEPG------------YLGAALALAE 460 (561)
Q Consensus 399 ~~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~ 460 (561)
.+--..+|+..+.. +..+...| ..+|.+++.. +.+.+-.+.+++.-..... -.+++..-..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~-~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDR-GEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeH-HHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 33333444433321 12233333 3567777776 7776666666555433211 1233444456
Q ss_pred HHHHcCChHHHHHHHHHHHhhC---CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 461 LHVIEGRNGDAVSLLERYLKDW---ADD----SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
.|..+.+...-..+|++++... |.+ .+.-.=|..+.+.|++++|-..|-.|++..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 6677777777777788877654 333 223333566777888888888777777653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.13 Score=42.79 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=80.2
Q ss_pred CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHH
Q 008550 37 TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS 116 (561)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 116 (561)
........++..+|.-|++.|++++|++.|.++.+...+ + -.-.+..+.+.+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~---------------------------~~~id~~l~~ir 81 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-P---------------------------GHKIDMCLNVIR 81 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-H---------------------------HHHHHHHHHHHH
Confidence 345666778999999999999999999999998775311 1 022567888999
Q ss_pred HHHhcCCHHHHHHHHhcCCC---cccchh----HHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 008550 117 CHFALGETKAAIVEMEGIPS---KARNLQ----MSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~~~---~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 171 (561)
+.+..+++..+...+.++.. .+.+.. ....-|..++..++|.+|...|-.+....
T Consensus 82 v~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 82 VAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999988887532 223222 33556777888999999999988776444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.72 Score=37.12 Aligned_cols=126 Identities=19% Similarity=0.127 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML 292 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 292 (561)
|+.+.-+.+.+..++|+..|..+-+..-.+ .-+.+..+.+....|+...|+..|..+-...|-- --+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555666677777777777766553332 2345566777777777777777777765543321 1234455566
Q ss_pred HHhcCCHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHh
Q 008550 293 LKVKCDYSKLSKLVHDLLS-IDPSRPEVFVALSVLWER-KDERGALSYAEKSIR 344 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~ 344 (561)
+...|.|++.....+.+-. .+|-...+.-.||..-.+ |++.+|..+|.....
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6677777666655544321 233334455555655555 666666666666554
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.5 Score=45.83 Aligned_cols=126 Identities=16% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH--HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H
Q 008550 402 ALYAAREAMKAMPQSAKALKLV--GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER-Y 478 (561)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~ 478 (561)
++..+...+..+|.++..+... ...+... +....+.-....++..+|++..+..+++......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPL-ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccc-ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444445555555553322 3333333 5555666666666666666666666666666666555555444444 4
Q ss_pred HhhCCCh-HH------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 479 LKDWADD-SL------HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 479 ~~~~~~~-~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
....|.+ .+ ++.+++....+|+..++.....++..+.|.++.+...+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4444443 22 22246677777777777777777777777776666555555
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.031 Score=49.03 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE-YAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
|.+.....|+++..|...+..-...|.+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...+.+.+..+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445556678888888888887788888888888888888888888888876 5556677888888888888888888888
Q ss_pred HHHHHHHH
Q 008550 317 PEVFVALS 324 (561)
Q Consensus 317 ~~~~~~l~ 324 (561)
|.+|...-
T Consensus 176 p~iw~eyf 183 (435)
T COG5191 176 PRIWIEYF 183 (435)
T ss_pred chHHHHHH
Confidence 88776544
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.3 Score=41.14 Aligned_cols=238 Identities=12% Similarity=-0.016 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR----PEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
....+.+.......|.++-.....+..+...|+.+.|+..++..++ +.- .-.++.++.++.- .+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444445555556777776667777777777776666766666655 211 1134445555555 67777777777
Q ss_pred HHHhccCCChhHHHHHH-HHHHh--------cCChhHHHHHHHHhH---HhCCCh----HHHHHHHHHHHhcCCHHHHHH
Q 008550 341 KSIRIDERHIPGYIMKG-NLLLS--------MKRPEAAVIAFRGAQ---ELRPDL----RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~ 404 (561)
..........-.|..++ -|++. .|+-+.|-..++... ...|.+ ......+.-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------ 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------ 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence 66665544433333333 22221 123333322222221 111211 111111111111110
Q ss_pred HHHHHHHHCCCCHH--HHHHHHHHHhhh-cCChHHHHHHHHHHHH---h-CCCCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 008550 405 AAREAMKAMPQSAK--ALKLVGDVHASN-ASGREKAKKFYESALR---L-EPGYLG-AALALAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 405 ~~~~~~~~~p~~~~--~~~~l~~~~~~~-~~~~~~A~~~~~~a~~---~-~p~~~~-~~~~la~~~~~~g~~~~A~~~~~ 476 (561)
.++..+. .++.++.++..- ....++.. -++...+ . ++++.- -++.+|.++..+|+...|..+|.
T Consensus 402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 402 -------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred -------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0001111 112222222111 01222222 1121111 1 222222 34567999999999999999998
Q ss_pred HHHhhC----C----ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCccH
Q 008550 477 RYLKDW----A----DDSLHVKLAQVFAATNM-LQEALSHYEAALRINSQNE 519 (561)
Q Consensus 477 ~~~~~~----~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 519 (561)
..++.. . .+-+++.+|..+...|. ..++..++.+|-+...++.
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 877432 1 12688999999999988 9999999999988775543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.22 Score=38.96 Aligned_cols=77 Identities=18% Similarity=0.005 Sum_probs=61.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
......++.+++..++..+--..|+.+++-..-|.++...|+|.+|+..|+.+....+..+...-.++.|+..+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34445788888888888888888888888888888888888999998888888887777777777777787777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.13 Score=44.09 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=56.8
Q ss_pred hhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCC
Q 008550 16 LYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSS 95 (561)
Q Consensus 16 ~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 95 (561)
.++.|+......+-.. ......+...+..++.+|+.|-..|+-+....++++|+......-.. .
T Consensus 92 t~~~ai~~YkLAll~~-~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~-----------e---- 155 (214)
T PF09986_consen 92 TLEEAIESYKLALLCA-QIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN-----------E---- 155 (214)
T ss_pred CHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh-----------C----
Confidence 4555665544443332 22233456788899999999999998666556666655543100000 0
Q ss_pred CcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc
Q 008550 96 SPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK 137 (561)
Q Consensus 96 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 137 (561)
.+.....++..+.+.+|....+.|++++|...+.++...
T Consensus 156 ---~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 156 ---DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 000112233456666666666666666666666665433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.026 Score=47.18 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 556666666666666666666666666666666666666666666666666554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.8 Score=42.06 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 228 SNDYKGGLELFAELLQR------------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
..-|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34566777776666543 23335566666666666666666666666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.33 Score=45.59 Aligned_cols=126 Identities=12% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-CCChHHHHHHHHHHHhcCCHHHHH
Q 008550 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEAL 403 (561)
Q Consensus 325 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 403 (561)
..+..|+.-.|-.-...++...|.+|......+.+...+|+|+.+...+..+-.. ...+.+...+-.....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3344488888888888888889999988888899999999999998887766554 233455666677788899999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
....-.+...-+++++....+...... |-++++..++++.+.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l-~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADAL-QLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHH-hHHHHHHHHHHHHhccCChh
Confidence 988888877767777776666666666 88899999999999887754
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.81 Score=34.13 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCh-----HH
Q 008550 432 SGREKAKKFYESALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-----SL 487 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-----~~ 487 (561)
|-+++|...++++.+...+ +...+-.|+..+..+|+|++++..-++++... .+. .+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 7777887778777765322 12355667888888888888877777776533 333 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
-+..|..+..+|+.++|+..|+++-+.
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 477888899999999999999987553
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2 Score=37.71 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHH
Q 008550 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTY 66 (561)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 66 (561)
++.++.+...+++++|+.....++....+.......++..+...++..|...|+|..-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 57789999999999999999888876444455556777788999999999999886544433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.89 Score=44.09 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
++.++.+| ++.|+.+.|.+..+.+. ++..|-.||...+.+|+++-|..+|+++
T Consensus 321 ~~~rFeLA---l~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 321 PDHRFELA---LQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHH---HHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred hHHHhHHH---HhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34555554 67899999999887664 5679999999999999999999999987
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.98 Score=33.72 Aligned_cols=58 Identities=16% Similarity=0.024 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHh-------CCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL-------RPDL-----RSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
+..++..+..+|+|++++..-..++.. +.+. .+.+..+..+...|+.++|+..|+.+.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 444555555566665555444444322 1221 122344445555555555555555443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.69 Score=35.46 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcC---ChhHHHHHHHHhHH-hCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 008550 350 IPGYIMKGNLLLSMK---RPEAAVIAFRGAQE-LRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (561)
....++++.++.... +..+.+.+++..++ ..|.. +..+.++..+.+.++|+.++.+.+..++..|++..+....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345566666666544 34556677777765 34443 3466677777777777777777777777777776655443
Q ss_pred H
Q 008550 424 G 424 (561)
Q Consensus 424 ~ 424 (561)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.51 Score=39.24 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--h-----HH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWAD--D-----SL 487 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~-----~~ 487 (561)
.++..+|..|.+. |+.+.|++.|.++....... .+.++.+..+....|++.....++.++-..... + ..
T Consensus 37 ~~~~~l~~~~~~~-Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKI-GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3455566666665 66666666666655433221 234455556666666666666666655443321 1 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
...-|..+...|+|.+|.+.|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4445666667778888887777665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.9 Score=40.63 Aligned_cols=157 Identities=16% Similarity=0.014 Sum_probs=82.9
Q ss_pred HHHHHHccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 222 AQCCIASNDYKGGLELFA--ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
-......++++++..... +++..-| ......++..+.++|-++.|+...+ +++..+.+ ..+.|+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCH
Confidence 455667788888777775 2232333 3446667777888888887776543 23444443 4677888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
+.|.+..+ ..+++..|..+|..... |+++-|..+|+++- -+..+..+|...|+.+.-.+....+..
T Consensus 335 ~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 88876543 33467788888887777 88888888877652 233455566666766544444443332
Q ss_pred hCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 379 LRPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
....+ ..-.+++..|+.++.++.+.+
T Consensus 402 ~~~~n----~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGDIN----IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-HH----HHHHHHHHHT-HHHHHHHHHH
T ss_pred ccCHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 22211 112333444555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.062 Score=47.20 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=73.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHh-cCHhHHHHHHHHHHhccCC
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL-WER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
.|.++-...|.++..|..++......|.+.+--.+|.++++.+|.+.+.|...+.. +.. ++++.+...+.+++..+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34455566788999999999999999999999999999999999999999875443 344 9999999999999999999
Q ss_pred ChhHHHHH
Q 008550 349 HIPGYIMK 356 (561)
Q Consensus 349 ~~~~~~~l 356 (561)
.|..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 99887653
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.9 Score=39.29 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-----C----------------CChHH----HHHHHHHHHhcCCHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----R----------------PDLRS----YQGLVHSYLQFSKVKE 401 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----------------~~~~~----~~~l~~~~~~~~~~~~ 401 (561)
|-+.+.+..++.+...+|+.+.|.....+++=. . |.++. .+.....+.+.|-+.-
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 444555666666666666666555555554311 1 12222 2223344456677777
Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCC---hHHHH
Q 008550 402 ALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESA-----LRLEPGYLGAALALAELHVIEGR---NGDAV 472 (561)
Q Consensus 402 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a-----~~~~p~~~~~~~~la~~~~~~g~---~~~A~ 472 (561)
|.++++-.++++|. +|.....+..+|.-...+|.=-+..++.. +..-|+. ..-..+|..|..... -..|.
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHH
Confidence 77777777777776 66665555555554434554444444433 2223332 222345555555444 34566
Q ss_pred HHHHHHHhhCC
Q 008550 473 SLLERYLKDWA 483 (561)
Q Consensus 473 ~~~~~~~~~~~ 483 (561)
..+.+|+...|
T Consensus 440 ~~l~qAl~~~P 450 (665)
T KOG2422|consen 440 NALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhCc
Confidence 66666666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.078 Score=31.49 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
.++..+|..|..+|+|++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467889999999999999999999999875
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.9 Score=40.93 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHH--HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH-
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVAL--SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG- 375 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l--~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~- 375 (561)
.-++..+...+..+|.++..+... ...+.. ++...+.-.....+..+|.+..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 335556666666777777764443 444444 7777888888888888888888888888888777777776666655
Q ss_pred hHHhCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 376 AQELRPDLR-------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 376 ~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
+....|++. .++.++......|+..++...+.++....|.++.....+.....+
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 666667652 133457777788888888888888888888876666555544333
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.45 Score=46.48 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=81.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+...|...++..+|..+++.|...+...|.+ ......++.||..+.+.+.|.++++.+-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3456788899999999999999999887765 4566778899999999999999999999999999988888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhc
Q 008550 292 LLKVKCDYSKLSKLVHDLLSI 312 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~ 312 (561)
+....|.-++|+.+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888999999999888776544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=6.9 Score=40.32 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
..+|..++..+.... .+....-....+....++++.+...+......... ....+.+|..+...|+.++|...|+++.
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555443222 12223333333444566666655555553222111 1345566666666677777766666653
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCCh-H--HH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 008550 411 KAMPQSAKALKLVGDVHASNASGR-E--KA-KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~-~--~A-~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (561)
. +.+ .|-.++.-.. |.. . .. ...-...+ +. ......+..+...|+...|...+..++.. .++.
T Consensus 374 ~--~~~--fYG~LAa~~L---g~~~~~~~~~~~~~~~~~---~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~ 440 (644)
T PRK11619 374 Q--QRG--FYPMVAAQRL---GEEYPLKIDKAPKPDSAL---TQ--GPEMARVRELMYWNMDNTARSEWANLVAS-RSKT 440 (644)
T ss_pred c--CCC--cHHHHHHHHc---CCCCCCCCCCCCchhhhh---cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHH
Confidence 2 211 2222222111 211 0 00 00000000 11 12345677788889999999988888775 4455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
-...++.+....|.++.++....++
T Consensus 441 ~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 441 EQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 6677788888888888887666543
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.35 E-value=4.4 Score=37.68 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=100.4
Q ss_pred HHHHhhhhhhhHHhHHHHHH-HhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhh
Q 008550 9 TALIDQGLYDSAQMLGCFLV-SSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSS 87 (561)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 87 (561)
-.|++++.|.+|....+.++ +++..+...-.-..+..|+.+..++-..|+...-...+...+....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt------------- 200 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT------------- 200 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-------------
Confidence 35678889999988887764 4444444444555677888888888888887777777766665420
Q ss_pred cccCCCCCCcccccccCC--ChHHHHHHHHHHHHhcCCHHHHHHHHhcCC--Cc-c--cchhHHHHHHHHHHhcCChhhH
Q 008550 88 LSTSNRSSSPNSFNVSAI--NENEVKYKIASCHFALGETKAAIVEMEGIP--SK-A--RNLQMSLLMAKLYRNSRHNRGA 160 (561)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~--~~-~--~~~~~~~~l~~~~~~~~~~~~A 160 (561)
+... ....+...+-++|+..+.|+.|-....+.. .. . .....++.+|.+..-+++|..|
T Consensus 201 --------------Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 201 --------------LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred --------------hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHH
Confidence 0000 113355567789999999999999988853 22 2 2345668899999999999999
Q ss_pred HHHHHHHHhcCCCc
Q 008550 161 VACYKECLRHCPFF 174 (561)
Q Consensus 161 ~~~~~~~l~~~p~~ 174 (561)
..+|-+++...|..
T Consensus 267 ~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 267 LEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhCcch
Confidence 99999999999973
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=7.2 Score=40.16 Aligned_cols=398 Identities=10% Similarity=-0.045 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHH---Hc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE---LG 185 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~---~~ 185 (561)
.-.|.-|.-.++.|++..+......+...|- ..+.....+....+.. .-..+...++.+|+.+........ ..
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 3577888899999999999888887764442 2233333333232321 122555666777766544322211 11
Q ss_pred CCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 008550 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 265 (561)
...++....+... ...| .........+......|+-++|.....++.......+.....+-..+...|..
T Consensus 110 a~~~~w~~~~~~~----~~~p------~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKP------KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHccCHHHHHHhc----CCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence 1222332222211 0001 01111111233444555555555555555444444444444444444444443
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHh-cCCHhHHHHH-H------HHHHhcCCCCH--HHHHHHHHHHHh-cCHhH
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKV-KCDYSKLSKL-V------HDLLSIDPSRP--EVFVALSVLWER-KDERG 334 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~-~------~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~ 334 (561)
......-+--+.+...+......+...+-. ....-++... . .......|.+. .-...++..-.. .+.+.
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 333222111111222222222222221100 0000001100 0 00011111111 111111211222 56677
Q ss_pred HHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 335 ALSYAEKSIRIDERHI----PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 335 A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
|...+.+.....+-+. .++..+|.-....+..++|...+..+.....+.........+....++++.....+..+-
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 7777766544433222 223333333333322556666666654443333333333445557778877777776654
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---H-HHHHHHHHhhCCChH
Q 008550 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD---A-VSLLERYLKDWADDS 486 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A-~~~~~~~~~~~~~~~ 486 (561)
..........+.+|..+... |+.++|...|+++.. +.+ .|-.++.-. +|..-. . ...-...+.. .
T Consensus 340 ~~~~~~~rw~YW~aRa~~~~-g~~~~A~~~~~~~a~--~~~--fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~~----~ 408 (644)
T PRK11619 340 MEAKEKDEWRYWQADLLLEQ-GRKAEAEEILRQLMQ--QRG--FYPMVAAQR--LGEEYPLKIDKAPKPDSALTQ----G 408 (644)
T ss_pred HhhccCHhhHHHHHHHHHHc-CCHHHHHHHHHHHhc--CCC--cHHHHHHHH--cCCCCCCCCCCCCchhhhhcc----C
Confidence 44445667778888887776 888888888888643 222 222233221 222100 0 0000011111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
-....+..+...|+...|...+..++.. . ++.-...++.+-...+
T Consensus 409 ~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g 453 (644)
T PRK11619 409 PEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQ 453 (644)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCC
Confidence 2466777888999999999999888875 2 3444555555554443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.082 Score=44.37 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
.....++.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344567888888888888888888888888888888888888888888888888888763
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.7 Score=39.22 Aligned_cols=172 Identities=11% Similarity=0.003 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHH
Q 008550 157 NRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLE 236 (561)
Q Consensus 157 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 236 (561)
..+++..=.+.+..+|+...+|..--.+....... . ...-.....-.++-+.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~------~----------------------~~~~~ek~~~ld~eL~ 96 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR------A----------------------QLEPLEKQALLDEELK 96 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh------h----------------------cCCHHHHHHhhHHHHH
Confidence 35677777888888998777775432221100000 0 0111122235677788
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc----CCHhHHHHHHHHHH
Q 008550 237 LFAELLQRFPNNIHILLEMAKVDAIIGK--NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK----CDYSKLSKLVHDLL 310 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~ 310 (561)
+...+++.+|++..+|..+..++.+.+. +..=+.+.+++++.+|.+..+|...=.+.... ....+=+++..+++
T Consensus 97 ~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I 176 (421)
T KOG0529|consen 97 YVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLI 176 (421)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 8999999999999999999999987764 67889999999999999987775544433332 23566778889999
Q ss_pred hcCCCCHHHHHHHHHHHHh-------cC------HhHHHHHHHHHHhccCCChhHHHHH
Q 008550 311 SIDPSRPEVFVALSVLWER-------KD------ERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-------~~------~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
..++.+..+|.....+... |. ...-+.....++-.+|.+..+|+..
T Consensus 177 ~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 177 NDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred hccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 9999999999988877752 31 2244555666777889988887663
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.51 Score=43.65 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCCh--HHHHHHHHHHHHhcC
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINE--NEVKYKIASCHFALG 122 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~a~~~~~~~ 122 (561)
+-+.-|...|++|+|..|.--|+.++++..+-.- .+....+ ....... -.+--.+..||++++
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a-----------~~k~~~~----~~~di~~vaSfIetklv~CYL~~r 242 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAA-----------LSKPFKA----SAEDISSVASFIETKLVTCYLRMR 242 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh-----------ccCCCCC----ChhhHHHHHHHHHHHHHHhhhhcC
Confidence 3445577899999999999999999998622110 0000000 0000011 124556899999999
Q ss_pred CHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 123 ETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 123 ~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
+.+-|+....+ |..+|..+..++..+.++....+|.+|.+.+.-+
T Consensus 243 kpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 243 KPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred CCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997665 7788988999999999999999999998776544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.21 Score=47.46 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=57.3
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
....++..|.+++...|.....+...+.++.. |+.-.|+.-...++.++|....+++.++.++..++++.+|+.+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 34555666666666666666666655555544 45556666667777777777777777777777777777777777
Q ss_pred HHhHHhCCChH
Q 008550 374 RGAQELRPDLR 384 (561)
Q Consensus 374 ~~~~~~~~~~~ 384 (561)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 66666666543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.4 Score=32.78 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
+...+..|.-+|.+.+.++|+..++++++..++.+. ...+.-.+..++...|
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~----------------------------rf~~lG~l~qA~~e~G 57 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED----------------------------RFRVLGYLIQAHMEWG 57 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH----------------------------HHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999998754331 1234555778889999
Q ss_pred CHHHHHHHH
Q 008550 123 ETKAAIVEM 131 (561)
Q Consensus 123 ~~~~A~~~l 131 (561)
+|.+.+...
T Consensus 58 kyr~~L~fA 66 (80)
T PF10579_consen 58 KYREMLAFA 66 (80)
T ss_pred HHHHHHHHH
Confidence 999988754
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.35 Score=46.04 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (561)
+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.++.++..
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e 457 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE 457 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence 33455555556678889999999999999888888888888764 466677888888889999999999999999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
.+++.+|+.+...+...+|.+.
T Consensus 458 l~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 458 LTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999888888888553
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.3 Score=41.11 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=74.0
Q ss_pred hHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 214 RWLH-RYVEAQCCIASNDYKGGLELFAELLQRFP--------NN----------IHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 214 ~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~----------~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
.|+. .+..|..++++++|..|..-|..+++... .. ..+-..+..||..+++.+-|+....+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 3443 34457778888888888888888776422 11 13445688999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 008550 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (561)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (561)
.+..+|..+.-+...+.++..+.+|.+|...+-
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876553
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.13 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
+.+..+|.+-+..++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.55 E-value=1 Score=37.60 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=46.9
Q ss_pred hcCCHhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCChhHH
Q 008550 295 VKCDYSKLSKLVHDLLSI-DPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER----HIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A 369 (561)
....-+.|...|-++-.. .-++++..+.+|..|...+.++++..+.+++++.+. +++++..++.++...|+++.|
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333344555555444322 124567777777777777777777777777776443 356677777777777777766
Q ss_pred H
Q 008550 370 V 370 (561)
Q Consensus 370 ~ 370 (561)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.19 Score=29.77 Aligned_cols=28 Identities=36% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
++..+|.+|...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566777777777777777777777664
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=5.8 Score=35.76 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
..+.....+..+..+-++.-..+++++|.. .+|..++.- ...-..+|.+.++++++... ..+......... |
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~-~ 260 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ-S 260 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh-c
Confidence 444445555666666667777777777766 345444432 22335566667776665422 111111111111 2
Q ss_pred ChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLG--AALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~ 507 (561)
...+|. .+.+ .+.. +...++.|..++|+..+|++.++...+..|-. .++-++-..+....-|.+-...
T Consensus 261 ~~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 261 PQHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred cchhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 1111 2222 34568888999999999999999888877743 5566666666665555544444
Q ss_pred HHHHHhc-CCccHHHHHHHHHH
Q 008550 508 YEAALRI-NSQNEAAKKGLERL 528 (561)
Q Consensus 508 ~~~al~~-~p~~~~~~~~l~~l 528 (561)
+-+-=++ -|......+.-+.+
T Consensus 334 LakYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 334 LAKYDDISLPKSAAICYTAALL 355 (556)
T ss_pred HHhhccccCcchHHHHHHHHHH
Confidence 4433333 24444444433333
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.34 E-value=7 Score=36.59 Aligned_cols=140 Identities=18% Similarity=0.096 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc-----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 008550 400 KEALYAAREAMKAMPQSAKALKLVGDVHASNA-----------SGREKAKKFYESALRLEPGYLGAALALAELHVIEGR- 467 (561)
Q Consensus 400 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~- 467 (561)
+++++.-.+.+..+|+...+|+..-.++.... .-.++-+.+...+++.+|+...+|....+++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 34555556666677766666655444443320 124556677788888999999999999999988764
Q ss_pred -hHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCCCCCC
Q 008550 468 -NGDAVSLLERYLKDWADD-SLHVKLAQVFAAT----NMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDA 539 (561)
Q Consensus 468 -~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~ 539 (561)
+..=+.+.+++++.+|.+ ..|...=.+.... ....+=+++..+++.-++.|..+|.....+...+-+.+.+.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 577788899999998877 4443332222222 23566678888999999999999999999887665444333
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=93.17 E-value=6.1 Score=35.38 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
...|...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455566666666665555444
|
; PDB: 3LKU_E 2WPV_G. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.2 Score=37.46 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=83.5
Q ss_pred HHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHH---HHHHHHcCCccc
Q 008550 115 ASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI---TALAELGATPKD 190 (561)
Q Consensus 115 a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~~~ 190 (561)
...+++.+...+|+...+. +..+|.+......+-+++.-.|++++|...++-+-...|....-. ..+..+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e----- 82 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE----- 82 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH-----
Confidence 3567788999999998877 888899999999999999999999999999999999999754322 2222221
Q ss_pred HhHHhhccccccCCCCCCCC-ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 008550 191 IISLFAQTPNRSGRAPFDHL-DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN 247 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 247 (561)
.+...+ -.....|.-.. ++..|...+..+..+...|.-+.+..+-+++++..|.
T Consensus 83 --a~R~ev-fag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 83 --AARNEV-FAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred --HHHHHH-hccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 111111 11222333333 4566776666666665555665566666667766554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.01 E-value=12 Score=38.48 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
+-..+..+++...|.-|+.++... ..++....+.+..-|.-+|++|+|++|...|-+.+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~--------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ--------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345678888999999999876554 4456777889999999999999999999999998875
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.5 Score=47.16 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCC
Q 008550 218 RYVEAQCCIASNDYKGGLE------LFAELL-QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYI 282 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~------~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~ 282 (561)
.+..+......|.+.+|.+ ++.... ...|.....+..++.++...|++++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3444667777777777777 555322 3467778888888888888888888888877665432 223
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHh
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIR 344 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~ 344 (561)
...+..++......++...|...+.++... .|........++.++.. ++++.|+.+.+.+..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345555665556666666666665555432 22223334444544444 555555555555554
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.96 Score=32.95 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPN----N-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~----~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (561)
....+.|+|.+|++.+.+....... . ..+...+|.++...|++++|+..++.++++..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3445778888888888877764221 1 34556677777788888888888888777643
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.48 E-value=8 Score=34.95 Aligned_cols=193 Identities=13% Similarity=-0.001 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Q 008550 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (561)
.-+.+-+...+..+..+-++.-..+++++|.-..++..++.-- ..-..+|.++++++++... ..+...+....
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ 259 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh
Confidence 3344555556666677777777777777777777766665422 2234566666766665321 11111111111
Q ss_pred cCHhHHHHHHHHHHhccCCChh--HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIP--GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 404 (561)
|...+|.. + ...+.. +-..++.|..++|+..+|++.++...+..|-. ...-++...+....-|.+...
T Consensus 260 ~~~~da~~------r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 260 SPQHEAQL------R-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred ccchhhhh------h-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111 1 111222 33467888899999999999999888777743 234456666665555554444
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHH-------------hhhcCC---hHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 405 AAREAMKA-MPQSAKALKLVGDVH-------------ASNASG---REKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 405 ~~~~~~~~-~p~~~~~~~~l~~~~-------------~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
.+-+.-++ .|.++...+.-+.+- .+. |- -..|++...++++.+|.-|..+..
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrR-GLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRR-GLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhc-cccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 44333222 133332222211111 111 11 135777788888888877665543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.11 E-value=12 Score=36.20 Aligned_cols=94 Identities=15% Similarity=0.025 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
...+..+-.++.....+.-....+.+++... .+..++..++.+|... ..++-..+.+++.+.+-++...-..++..|.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3334444444444444444455555555543 2335556666666655 4455555666666666666655566666666
Q ss_pred hcCHhHHHHHHHHHHh
Q 008550 329 RKDERGALSYAEKSIR 344 (561)
Q Consensus 329 ~~~~~~A~~~~~~~~~ 344 (561)
.++-.++..+|.+++.
T Consensus 144 kik~sk~a~~f~Ka~y 159 (711)
T COG1747 144 KIKKSKAAEFFGKALY 159 (711)
T ss_pred HhchhhHHHHHHHHHH
Confidence 6666666666666553
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.77 Score=26.16 Aligned_cols=30 Identities=30% Similarity=0.226 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHH--HHHHHhhCC
Q 008550 251 ILLEMAKVDAIIGKNDEAILN--FEKVRSIDP 280 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~--~~~~~~~~~ 280 (561)
.++.+|..+..+|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 224444443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.59 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHhcCCc
Q 008550 488 HVKLAQVFAATNMLQEALSH--YEAALRINSQ 517 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 517 (561)
++.+|-.+...|++++|++. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45556666666666666666 3355555544
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.27 Score=25.54 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=8.7
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~ 475 (561)
..+|.++...|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.91 E-value=4.4 Score=34.00 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHH
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~g~~~~A~ 472 (561)
+++...+.+|..|.+ .+.++++..+-+++++.+. +++++..|+.++.+.|+++.|.
T Consensus 139 ~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666663 5666677777766665432 3556666666666666666653
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.24 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACY 164 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~ 164 (561)
.+.+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.2 Score=39.72 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
..++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345556666666667777777777777777777777777777777777777777766666544
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.73 E-value=9.4 Score=34.19 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=17.1
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHh
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSS 30 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~ 30 (561)
.+.+=+..+++.+++.+|..++..++.+
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev 39 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEV 39 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHH
Confidence 3445556667777777777776666554
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.43 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
++..+|.+-...++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5677788888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=2.4 Score=45.64 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCChhHHHH------HHHHhHH-hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------CCCC
Q 008550 353 YIMKGNLLLSMKRPEAAVI------AFRGAQE-LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQS 416 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~------~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~ 416 (561)
....|......|.+.+|.+ .+..... +.|+. ..+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3455666666777777766 3332222 23444 45888899999999999999887776532 2445
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRL--------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA----- 483 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----- 483 (561)
...+.+++...... ++...|...+.++..+ .|.-.....+++.++...++++.|+.+++.+.....
T Consensus 1015 ~~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 66677777777776 7778888888877654 233333456778888888999999999999887542
Q ss_pred Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 484 DD----SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 484 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.. ..+..+++.+...+++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 21 56677788888888888877777766544
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.1 Score=32.71 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
...+|.++...|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.54 Score=26.36 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 380 RPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
.|+..+|..+...+.+.|+.++|.+++++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45666677778888888888888877765
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.38 E-value=11 Score=34.31 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQR--FPNN--------IHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
..+.......++++++..+..++.. .|.+ -.....+|..+...|+.++-.......
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3466666777788888888888763 2222 245567788888888777655554443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.08 E-value=2.2 Score=37.58 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=53.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
+=..+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|+..++..++..|+++.+-....
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3445667778888888888888888888877788888888888888888888888888887776544433
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.9 Score=28.15 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 145 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
...|.-++..++.++|+..++++++..++...-+..++-+ ..+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l-------------------------------------~qA 52 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL-------------------------------------IQA 52 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH-------------------------------------HHH
Confidence 4445556688889999999999999988877766665433 677
Q ss_pred HHHccCHHHHHHHHHHHH
Q 008550 225 CIASNDYKGGLELFAELL 242 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~ 242 (561)
+...|+|.+++.+--.-+
T Consensus 53 ~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 53 HMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888877655443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.4 Score=38.64 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=61.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|++.+...++..|+.+.+-....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999977654433
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=90.73 E-value=12 Score=33.38 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
....+|..|+..|++++|.++|+.+....... .+...+..|+...|+.+..+...-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44566777777777777777777765443211 56666777777777777666554433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.29 E-value=24 Score=36.36 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=57.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH---HHHHh--
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS---VLWER-- 329 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~-- 329 (561)
.-.++.-.|+|+.|+.++-+ .+.+..--..+|.++...|-.......-...+...+.++.. .+++ ..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence 34567788999999998877 22222222233444444443333222224555555554321 2222 22222
Q ss_pred --cCHhHHHHHHHHHHhcc-CCChh-HHHHHHHHHHhcCC--------------hhHHHHHHHHhHHhCCCh----HHHH
Q 008550 330 --KDERGALSYAEKSIRID-ERHIP-GYIMKGNLLLSMKR--------------PEAAVIAFRGAQELRPDL----RSYQ 387 (561)
Q Consensus 330 --~~~~~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~----~~~~ 387 (561)
.+...|+.++--+-... |.... .+..+..+....++ ....++-..+.+...... ....
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 57777887775543322 11111 12222333333322 222333333333333221 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008550 388 GLVHSYLQFSKVKEALYAAREA 409 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~ 409 (561)
..|.-....|++++|+.+|.-+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 6677777888888888777653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.8 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 499 NMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
|+.+.|...|++++...|.++..|.....+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678888888888888888888888777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.72 E-value=14 Score=32.77 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc-----cCCChhH--
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSI------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-----DERHIPG-- 352 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-----~~~~~~~-- 352 (561)
..++.++++.|+|.+|+.....++.. .|.-..++..-..+|.. .+..++...+..+-.. .|....+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 44566777777787777766555421 22224455555566666 6666655555544332 1222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HH---HHHHHHHHHhcCCHHHHHHHHH--HHHH-HCCCCHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RS---YQGLVHSYLQFSKVKEALYAAR--EAMK-AMPQSAKALKL 422 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~---~~~l~~~~~~~~~~~~A~~~~~--~~~~-~~p~~~~~~~~ 422 (561)
-..-|..++...+|..|..+|-++++-...- .+ +..+...-...+..++--..++ ..++ .......+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 1223555666777888888887777653321 11 1111122222333333333222 1222 22233455555
Q ss_pred HHHHHhhh-cCChHHHHHHHHHHHHhC
Q 008550 423 VGDVHASN-ASGREKAKKFYESALRLE 448 (561)
Q Consensus 423 l~~~~~~~-~~~~~~A~~~~~~a~~~~ 448 (561)
.+..+..+ ..+|..|+..|..-+..+
T Consensus 289 vaea~~NRsL~df~~aL~qY~~el~~D 315 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDELHQD 315 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHHhccC
Confidence 55555432 134566666666655444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.9 Score=26.73 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
|..+...+.+.|++++|.++|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444444444444444444444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.15 E-value=2.2 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+.+|..|...|+.+.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455556666666666666665553
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=89.11 E-value=3.2 Score=25.71 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHH
Q 008550 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSY 393 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 393 (561)
...|..+-..+.+.|++++|.+.|++..+. .|+..+|..+...+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345666666777777777777777776665 34445555544433
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.83 E-value=35 Score=36.22 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQA 69 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 69 (561)
+-.++..++....|+.|+.+++...+- ++..............|..+|.+|+|++|...|.++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~---~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSP---NPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCC---ChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 446788999999999999877665441 111111111112222267799999999999999986
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.75 E-value=10 Score=34.12 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCcc--c--c----hhHHHHHHHHHHhcCChhhHHHHHHHHH--hcCCCcHHH
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGIPSKA--R--N----LQMSLLMAKLYRNSRHNRGAVACYKECL--RHCPFFIEA 177 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~--~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~ 177 (561)
..++..+|..|-+.++|..|-..+..++... . + ...+..+|++|...++..+|..+..++- ..+..|...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 4578999999999999999999999987553 1 1 2345678999999999999998888762 333344444
Q ss_pred HHH
Q 008550 178 ITA 180 (561)
Q Consensus 178 ~~~ 180 (561)
...
T Consensus 183 qie 185 (399)
T KOG1497|consen 183 QIE 185 (399)
T ss_pred HHH
Confidence 433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.2 Score=37.08 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.++..++..+... |+++.++..+++.+..+|-+...|..+-..|...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~-~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIAC-GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444455555554 5566666666666666666656666666666666666666666555443
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.2 Score=42.13 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCc---------ccchhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 110 VKYKIASCHFALGETKAAIVEMEGIPSK---------ARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
....+.+++.-+|+|..|++.++.+... +-....++..|-+|+..++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888999999999999987433 22456778999999999999999999999873
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=88.30 E-value=13 Score=35.50 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHhCCHHHHHHHHHHHHhh
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIH--ILLEM--AKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
....+..++..++|..|.+++..+...-|.+.. .+..+ |.-+...-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345577888999999999999999886444433 33333 44455677888999999987765
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=88.16 E-value=19 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
.-|.-|.+.|+...|..+|.+++....
T Consensus 375 LAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 375 LAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 346778899999999999999988754
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.7 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 229 NDYKGGLELFAELLQRFPNNIHILLEMAK 257 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 257 (561)
|+.+.+..+|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666655544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.6 Score=26.26 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
+.+|..|..+|+.+.|.+.++..+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46777777777777777777777743
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=86.93 E-value=2 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEA 510 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 510 (561)
|+..+|..+...|.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444555555566666666666655543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.79 E-value=32 Score=33.48 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
+..+-.++....+..-....+.+.+....+--+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ +
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk--i 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK--I 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH--h
Confidence 33334444444444444555555555555555566666666655 34455556666666666666555666665554 5
Q ss_pred ChHHHHHHHHHHHHhC-CC--CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHH
Q 008550 433 GREKAKKFYESALRLE-PG--YL---GAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~-p~--~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~ 503 (561)
+.+.+..+|.+++... |. +. +.|..+-. .--.+.+.-+....+.-...... .++..+-.-|....++.+
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 5566666666665432 21 11 11211111 01122333333333332222222 222233345566677888
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
|++.....++.+..|..++.++....+
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 888888888888888777777665443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=86.78 E-value=14 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=24.6
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHH
Q 008550 294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAE 340 (561)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (561)
...+.....+.+++.++..++.++.....+..+|..-+..+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHH
Confidence 33455555566666655555555555555555555433444444444
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=86.73 E-value=25 Score=32.13 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=8.8
Q ss_pred hhhchhHHHHHHHHHHH
Q 008550 53 LFRDREYRRAIHTYKQA 69 (561)
Q Consensus 53 ~~~~~~~~~A~~~~~~a 69 (561)
.-..++++-|.+.|..+
T Consensus 23 ~r~~rd~dlAEEa~~dA 39 (415)
T COG4941 23 ARYLRDLDLAEEALQDA 39 (415)
T ss_pred HHHhcccchHHHHHHHH
Confidence 33445555555555554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.54 E-value=3.6 Score=36.42 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
.+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+.+.+++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344555556666666666666666665555555555555555555555554443
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=86.30 E-value=17 Score=29.87 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh----cCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN----ASG--REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
+++..|++.+..+.. .+.+.+...+|.++..- .++ .++|.+++.++..+. +..+-+.|...+..-. ++
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k 160 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK 160 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh
Confidence 355556666655544 34455555555554431 122 456777777766553 3445555554443221 11
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCC
Q 008550 471 AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 471 A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 535 (561)
+....|....-...+..+.-..+.++|.++--+|-++ +++.+-.++.+++..-.|+
T Consensus 161 -------~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv 216 (248)
T KOG4014|consen 161 -------FKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGV 216 (248)
T ss_pred -------hcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCC
Confidence 1111221100112233344455667777777777665 3666777777777654443
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.16 E-value=98 Score=38.40 Aligned_cols=103 Identities=11% Similarity=-0.077 Sum_probs=59.2
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHH---HHHHHHHHhcCC
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVK---YKIASCHFALGE 123 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~~~~~~ 123 (561)
...|..|.+.|.+++|...|+++........ . ..++.+.. -....|..++.+
T Consensus 2486 T~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~-------------------~------~~~~~Ey~lWed~WI~Ca~eL~Q 2540 (3550)
T KOG0889|consen 2486 TMVALSYEQLGFWEEAQSLYEKAQVKAREGA-------------------I------PYSESEYKLWEDHWIRCASELQQ 2540 (3550)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHhccc-------------------C------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999976531111 0 11222222 224566666777
Q ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHH
Q 008550 124 TKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL 181 (561)
Q Consensus 124 ~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (561)
|+--.+.-+.. .....+-.+..+.-++..-...+.+..+..|+.......+
T Consensus 2541 Wdvl~e~~k~~-------~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~ 2591 (3550)
T KOG0889|consen 2541 WDVLTEFGKHE-------GNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKEL 2591 (3550)
T ss_pred HHHHHHHHhcc-------CCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHH
Confidence 76665555221 1112333444455666666666777766666654444333
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.07 E-value=51 Score=35.10 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=33.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-CcccchhH----HHHH-HHHHHhcCChhhHHHHHHHHH
Q 008550 114 IASCHFALGETKAAIVEMEGIP-SKARNLQM----SLLM-AKLYRNSRHNRGAVACYKECL 168 (561)
Q Consensus 114 ~a~~~~~~~~~~~A~~~l~~~~-~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~l 168 (561)
--..++...++++|+...+... ..|..... .... |..++.+|++++|+..|.+.-
T Consensus 313 qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 313 QIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3455566666888888877643 22322111 1122 555778888888888888763
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.35 E-value=35 Score=32.48 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=90.9
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCcH--HHH
Q 008550 104 AINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKL-YRNSRHNRGAVACYKECLRHCPFFI--EAI 178 (561)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~--~~~ 178 (561)
..+..+....-|..-+-.|+-.+|.+.|..+... |...-.++.|... .....++.+|+..|..+--..|.-. ++-
T Consensus 108 ~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAA 187 (421)
T PRK12798 108 KLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAA 187 (421)
T ss_pred CCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3344556666666667788888888888876433 4444444444333 3455678888888888877777532 111
Q ss_pred HHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH---HH
Q 008550 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILL---EM 255 (561)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~l 255 (561)
... ...+....|+.++...+-.+.+..+..++.+.. ..
T Consensus 188 LRR---------------------------------------si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F 228 (421)
T PRK12798 188 LRR---------------------------------------SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRF 228 (421)
T ss_pred HHH---------------------------------------hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 100 023344567777777777777776666543322 22
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh-CCCC-hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 008550 256 AKVDAIIGKNDEAILNFEKVRSI-DPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID 313 (561)
Q Consensus 256 a~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 313 (561)
+......++-..- ..+..++.. +|.. ...|..+++.-...|+.+-|.-.-+++..+.
T Consensus 229 ~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 229 VDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 2233333221111 113333332 3332 3455556666666666666665555555543
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=85.29 E-value=30 Score=31.68 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
++|+..-.-...+.|..++++-.++.+.+...+...=...=-..+-+...+.. .+..+-.+++...+.+++..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~-------lW~r~lI~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS-------LWDRALIDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh-------hhhHHHHHHHHHHHHHHHHc
Confidence 35666666666677777777666655554332211000000000000111111 12223345666667766654
Q ss_pred C-CCCHHHHHHHHHHHhhh----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---C
Q 008550 413 M-PQSAKALKLVGDVHASN----ASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---D 484 (561)
Q Consensus 413 ~-p~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~ 484 (561)
. |......-.++.++... .-+|..-..+|.-.....|+ |.+-.+.+....+..-...++...+....... .
T Consensus 286 ~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy 364 (415)
T COG4941 286 RRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGY 364 (415)
T ss_pred CCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccc
Confidence 3 33333333334343322 13556666667666666664 55556666666666667777777776665422 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 485 DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 485 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
...+...|.++.++|+.++|...|++++.+.++..+..+...++...
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~l 411 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDRL 411 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 25778889999999999999999999999999888877776666543
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=85.21 E-value=9.1 Score=34.04 Aligned_cols=84 Identities=14% Similarity=-0.023 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELH 462 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~ 462 (561)
........+..+.++....... ......+|.-|... |++++|.++|+.+....... ..+...+..|.
T Consensus 150 ~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~-g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 150 GVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL-GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred ccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3445567788888888765432 34556788889988 99999999999987653322 34667788888
Q ss_pred HHcCChHHHHHHHHHHH
Q 008550 463 VIEGRNGDAVSLLERYL 479 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~ 479 (561)
...|+.+..+.+.-+++
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 89999888777655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=84.92 E-value=5.1 Score=36.41 Aligned_cols=61 Identities=30% Similarity=0.314 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHH
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-ADDSLHVKLAQVFAA 497 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~la~~~~~ 497 (561)
|..+|.+|..+.|.+...+..+|.+....|+.-.|+=+|-+++-.. |-+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777666666433 333556666665555
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.64 E-value=7.6 Score=38.28 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=40.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
.+.++.|+++.|..+..+. ++..-|-.||.+....|++..|.++|.++..
T Consensus 645 elal~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3456789999998877643 3456688999999999999999999999853
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.35 E-value=11 Score=33.49 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=32.3
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
.+..|... |.+.+|+.+.++++.++|-+...+..+-.++...|+--.|++.|++.
T Consensus 285 va~~yle~-g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEA-GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHc-CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444 66666666666666666666666666666666666655555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.90 E-value=39 Score=35.17 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=48.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--CCCHHHH----HHHHHHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLE--PGYLGAA----LALAELH 462 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~----~~la~~~ 462 (561)
-.++...++|++|++++..+ .|. -.......|..+.. ..+++-...+-+.+... +...... ...-.+.
T Consensus 497 ~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~--h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~ 571 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE--HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIG 571 (933)
T ss_pred HHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhhee
Confidence 34556778888888887653 222 23455667777775 56677666666665432 1110100 1122223
Q ss_pred HHcCChHHHHHHHHHHHhhCCCh
Q 008550 463 VIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.-.+++..-...++...+..|+.
T Consensus 572 if~~~~~~~~~Fl~~~~E~s~~s 594 (933)
T KOG2114|consen 572 IFSQNYQILLNFLESMSEISPDS 594 (933)
T ss_pred eeccCHHHHHHHHHHHHhcCCCc
Confidence 33455555555555555555543
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.72 E-value=6.3 Score=33.47 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+..++..++.++..|++.++..++.++...|+.++|.....++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34556667777778888888889999999999999999999999999943
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=83.30 E-value=4.7 Score=36.67 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
|..+|.+|....|.+...++.+|.+.... |+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~-~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ-GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT-T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555554 555555555555554333334455555554444
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.88 E-value=23 Score=35.20 Aligned_cols=79 Identities=23% Similarity=0.126 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA 431 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 431 (561)
.....+..+..+|-.++| +++.++..-.+ .+..+.|+++.|.++..++ ++..-|..+|......
T Consensus 616 ~rt~va~Fle~~g~~e~A-------L~~s~D~d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~- 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQA-------LELSTDPDQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA- 679 (794)
T ss_pred hhhhHHhHhhhccchHhh-------hhcCCChhhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc-
Confidence 344556666666665555 44444443322 3345778888887765543 5677788889988887
Q ss_pred CChHHHHHHHHHHHH
Q 008550 432 SGREKAKKFYESALR 446 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (561)
+++..|.++|.++..
T Consensus 680 ~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 680 GELPLASECFLRARD 694 (794)
T ss_pred ccchhHHHHHHhhcc
Confidence 999999999888743
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=82.50 E-value=12 Score=29.65 Aligned_cols=53 Identities=17% Similarity=0.007 Sum_probs=35.6
Q ss_pred hCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 481 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.....+.....+.-....|++.-|.+....++..+|+|..++...+...+.++
T Consensus 66 l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 66 LAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 33344445556666677788888888888888888888888888877777665
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=82.47 E-value=47 Score=31.81 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhH-------HhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQ-------ELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
...+.+++.-+|+|..|++.++..- ...|.. ..++.+|-+|..+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777765431 111221 3467778888888888888887777653
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=82.34 E-value=34 Score=30.11 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhh-----CCCh----HHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 008550 469 GDAVSLLERYLKD-----WADD----SLHVKLAQVF-AATNMLQEALSHYEAALR 513 (561)
Q Consensus 469 ~~A~~~~~~~~~~-----~~~~----~~~~~la~~~-~~~g~~~~A~~~~~~al~ 513 (561)
+.|...|++++.. .|.+ .+..+.+..| .-.|+.++|++..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666543 3433 2334444444 447888888877776654
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.21 E-value=83 Score=34.43 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc
Q 008550 110 VKYKIASCHFALGETKAAIVEMEG 133 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~ 133 (561)
.-+...+-++..++|.+|.+...+
T Consensus 679 lVLa~vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 679 LVLAKVRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888999999998886
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.83 E-value=3.5 Score=37.59 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
..-..|...++.++|+.|..-|.+++......++. ...+..+-...........+..++.+-++.+.+
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~------------~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~ 291 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRD------------REKEQENRIPPLRELRFSIRRNLAAVGLKVKGR 291 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccc------------cccccccccccccccccccccchHHhcccccCC
Confidence 33446677899999999999999998763211111 111111100000111134566688999999999
Q ss_pred HHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHH
Q 008550 125 KAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE 183 (561)
Q Consensus 125 ~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (561)
..|+..... +...+....+++..+..+....++++|+..+..+....|.+......+..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 999876554 44557778899999999999999999999999999999998877766543
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.79 E-value=7.4 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=11.7
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q 008550 432 SGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~ 451 (561)
+++.+|+..-+..+++.|..
T Consensus 380 nd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 380 NDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred cCHHHHHHHHHHHhccCCce
Confidence 55666666666666655543
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.53 E-value=41 Score=32.26 Aligned_cols=60 Identities=17% Similarity=-0.003 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHh-CCChH--HHHHH--HHHHHhcCCHHHHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLR--SYQGL--VHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~l--~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
....+..++..++|..|...+...... .+... .+..+ |..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 355667778889999999999888875 33333 23333 44456778888999888887764
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.86 E-value=1.6e+02 Score=36.81 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-HHHHHH---HHHHHHHcC-ChHHHHHHHHHHH-hhCCCh---HHH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY-LGAALA---LAELHVIEG-RNGDAVSLLERYL-KDWADD---SLH 488 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~---la~~~~~~g-~~~~A~~~~~~~~-~~~~~~---~~~ 488 (561)
.+....|.+.... |-++-++..+.+...+..-. .++... -+.+|.... ....++++.+..- ...++. +.+
T Consensus 2737 ~~in~fakvArkh-~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2737 WAINRFAKVARKH-GLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 3445556666665 66777777766665543211 122222 233333332 3444444443321 111222 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
...|....++|+.++|-..|..|++++-.-+.+|...+.....
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999998888888887765443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=80.33 E-value=3.3 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
|..+...|.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455555666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 561 | ||||
| 3ffl_A | 167 | Crystal Structure Of The N-Terminal Domain Of Anaph | 5e-11 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-07 |
| >pdb|3FFL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Anaphase-Promoting Complex Subunit 7 Length = 167 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Length = 167 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 6e-41
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 6 EQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIH 64
+ + + GL+ + ++L L++ S N E SP K + L+ DSLF D+EYR A+
Sbjct: 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVS 84
Query: 65 TYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124
Y ALQ K + K + + S S S +E EVKYK+A C+ L +
Sbjct: 85 KYTMALQQKKALSKTSKVRPSTGNSASTPQSQC------LPSEIEVKYKLAECYTVLKQD 138
Query: 125 KAAIVEMEGIPSKARNLQMSLLMAKLYR 152
K AI ++GIPS+ R ++++L+A LY+
Sbjct: 139 KDAIAILDGIPSRQRTPKINMLLANLYK 166
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-36
Identities = 88/543 (16%), Positives = 167/543 (30%), Gaps = 51/543 (9%)
Query: 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIH 64
+ + Q Y A +G ++ + + L +Y RA
Sbjct: 88 RLWRHDALMQQQYKCAAFVGEKVLDITG---------NPNDAFWLAQVYCCTGDYARAKC 138
Query: 65 TYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA-----SCHF 119
+ Y + SS + + ++ A +
Sbjct: 139 LLTKEDLYNR--------------------SSACRYLAAFCLVKLYDWQGALNLLGETNP 178
Query: 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAIT 179
+ K A + M L ++Y N + A CYKE L EA
Sbjct: 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238
Query: 180 ALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239
L D N S + D++ Y+ + D E +
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYS---TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295
Query: 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299
+ + +LL A + + + + K+ IDPY + + L +
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355
Query: 300 SKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGN 358
+KL + +DL+ P + ++A+ A Y KS +D + P +I +
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415
Query: 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417
+ A+ A+ A L Y L ++Q + A + +
Sbjct: 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 418 KALKLVGDVHASNASGR-EKAKKFYESALRLE-------PGYLGAALALAELHVIEGRNG 469
L +G V + + A +++AL L + L +
Sbjct: 476 LLLNELGVVAFNK--SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533
Query: 470 DAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLER- 527
A+ L + L +D ++H +A V+ + A++H +L I+ A L+R
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
Query: 528 LEK 530
LE+
Sbjct: 594 LEE 596
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 47/313 (15%), Positives = 108/313 (34%), Gaps = 17/313 (5%)
Query: 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295
+ E + N+ +++ +A+ V DP+ + + + L
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDER--GALSYAEKSIRIDERHIPGY 353
++L L H L+ + PS P + A+ + + A Y K+ +++ + P +
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128
Query: 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412
I G+ + A+ A+ A +L + Y + K A +A+
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALA---------LAELH 462
P+ + VG V N G + A+K++ AL L +
Sbjct: 189 APEDPFVMHEVGVVAFQN--GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 463 VIEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
+ +A+ + L ++ + + + + + A+ ++ AL + + +
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Query: 522 KKGLER-LEKQMK 533
L +E +
Sbjct: 307 VTMLGHCIEMYIG 319
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 49/325 (15%), Positives = 87/325 (26%), Gaps = 48/325 (14%)
Query: 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEA----ITAL 181
+ V E + NL + + +A+ + + + + PF I L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 182 AELGATPK---------DIISLFAQTPNRSGRAPFDHLDSSRWLH--------------- 217
EL + D+ + G +
Sbjct: 67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCY----YLMVGHKNEHARRYLSKATTLEK 122
Query: 218 RYVEA-----QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272
Y A +++ + + Q +L + + + A F
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL--------- 323
+ SI P M E ++ ++ K D L +
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242
Query: 324 -SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382
V + K AL Y +++ + ++ Y G + M E AV F A LR D
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Query: 383 L-RSYQGLVHSYLQFSKVKEALYAA 406
S L H + EA A
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 55/335 (16%), Positives = 114/335 (34%), Gaps = 47/335 (14%)
Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
A +A K L +++ + L+ + GK DEA +F+KV +P
Sbjct: 44 ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Query: 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEK 341
+ + L+K S+ + ++ D A+++ +K
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQAL------------------DAFDGADYTAAITFLDK 145
Query: 342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY---QGLVHSYLQFSK 398
+ + ++ + P A+ + A +L+ D ++ L
Sbjct: 146 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG--D 203
Query: 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNA----------SGR-EKAKKFYESALRL 447
+ +L RE +K + V N GR A YES ++
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 448 EP--------GYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLHVKLAQVFAAT 498
EP ++ + +A+ + L+ + + + A+ +
Sbjct: 264 EPSVAEYTVRSKERICHCFSKD----EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319
Query: 499 NMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
M EA+ YEAA N ++ ++GLE+ ++ +K
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 6e-17
Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 16/225 (7%)
Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
L ALS ++ D + Y + + L+M + +AA+ L+ D
Sbjct: 12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71
Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------- 434
+ H L+ K+ EA ++ +K+ P + + + ++ R
Sbjct: 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131
Query: 435 -----EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LH 488
A F + L + AE + EG A+S L+ K +D++
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
K++ ++ + +LS L+++ ++ ++++K K
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 52/396 (13%), Positives = 122/396 (30%), Gaps = 77/396 (19%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
E + LG L + A+ + A+ P+ N
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----------------------DPD--NY 37
Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMS-----LLMAKLYRNSRHN 157
A Y+ A+ A+G++KAA+ ++ K L+M L L
Sbjct: 38 IAY------YRRATVFLAMGKSKAALPDLT----KVIALKMDFTAARLQRGHLLLKQGKL 87
Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISL-FAQTPNRSGR-----APFDHL- 210
A +K+ L+ P E A ++L + A D +
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 211 ----DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
+ R + A+C I + + + + +N +++ + +G ++
Sbjct: 148 EVCVWDAEL--RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205
Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---------------LS 311
++ + +D + +A +VK + + +
Sbjct: 206 LSLSEVRECLKLDQ---DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262
Query: 312 IDPSRPEVFVAL-----SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366
+PS E V + + A+ + ++++ ++ + L +
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322
Query: 367 EAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKE 401
+ A+ + AQE + + +GL + + ++
Sbjct: 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 20/187 (10%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411
++ G LL+ + A+ F A + PD +Y +L K K AL + +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 412 AMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE----- 465
A G + G+ ++A+ ++ L+ P A ++L +
Sbjct: 66 LKMDFTAARLQRGHLLL--KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123
Query: 466 ----------GRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRI 514
A++ L++ L+ D+ L A+ F ++A+S +AA ++
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183
Query: 515 NSQNEAA 521
S N A
Sbjct: 184 KSDNTEA 190
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 75/542 (13%), Positives = 173/542 (31%), Gaps = 77/542 (14%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
A L G+ F + + AI Y+ A++ PN
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----------------------PNEP-- 59
Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKA-----RNLQMSLLMAKLYRNSRHN 157
I++C+ + G+ + I KA + + L A + +
Sbjct: 60 ------VFYSNISACYISTGDLEKVIEFTT----KALEIKPDHSKALLRRASANESLGNF 109
Query: 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISL---FAQTPNRSGRAPFDHLDSSR 214
A+ + F +I + E + + L ++ R + + +
Sbjct: 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169
Query: 215 WLHRYVEA---QCCIASNDYKGGLELFAELLQRFPNNI--HILLEMAKVDAIIGKNDEAI 269
+ + S++Y L ++ LQR + L+ + +
Sbjct: 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229
Query: 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWE 328
+ + + +K + L+ + +++ P P ++ L L +
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLAD 288
Query: 329 RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ 387
+++ + + +K++ ++ + P Y +G + ++ + A F+ AQ L P+ Y
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348
Query: 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALR 446
L + K E+ E P + ++ G + A K Y+ A R
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--GDFDTAIKQYDIAKR 406
Query: 447 LEPGY------LGAALALAELHVIEGRNGDAVSLLERYLK-----------DWADDSLHV 489
LE +G + A + + E++ D + +
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466
Query: 490 KLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL-----ERLEKQMKGVDPDAPEEDE 544
LAQ+ + EA+ +E + + + + +++K+++ DP + E
Sbjct: 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLR-ADPIISAKME 525
Query: 545 EN 546
Sbjct: 526 LT 527
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 9e-14
Identities = 43/316 (13%), Positives = 97/316 (30%), Gaps = 61/316 (19%)
Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK-------CDYSKLSKLVHDLLSIDPS 315
G + + +++ + P + YA+ LK + ++++ K + +DP+
Sbjct: 1 GSHMNGEPDIAQLKGLSP---SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Query: 316 RPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374
P + +S + + + + K++ I H + + + S+ A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
Query: 375 GAQELRPD------------------------------------------LRSYQGLVHS 392
L D L S+ G+ S
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 393 YLQFSKVK------EALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESAL 445
+L+ S V A +A++ + + LV + + ++
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEAL 505
L A H ++ DA LL+ + + ++ LA A QE
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFF 296
Query: 506 SHYEAALRINSQNEAA 521
++ A+ +N +
Sbjct: 297 KFFQKAVDLNPEYPPT 312
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 20/197 (10%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
+ F E +FP + A++ G D AI ++ + ++
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE-------- 409
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER 348
K+ + L+ + + A+ K+ +D R
Sbjct: 410 ---------VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460
Query: 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407
I L L M++ + A+ F + L + Q ++ + +K+++ L A
Sbjct: 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKRLRADP 518
Query: 408 EAMKAMPQSAKALKLVG 424
M + + G
Sbjct: 519 IISAKMELTLARYRAKG 535
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 7e-21
Identities = 53/299 (17%), Positives = 113/299 (37%), Gaps = 10/299 (3%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
D++ +L ++ P+N +LL ++ + + D + +P +
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDE 347
+ K + + + L + P + ++ L + L D GA+ +++ +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406
GNLL ++ R E A + A E +P+ ++ L + ++ A++
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
+A+ P A +G+V + ++A Y AL L P + LA ++ +
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLK--EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 466 GRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
G A+ R ++ + D + LA + EA Y ALR+ + +
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPD--AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 56/309 (18%), Positives = 98/309 (31%), Gaps = 16/309 (5%)
Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
+ +++ P + V G+ EAI ++ + P
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP- 98
Query: 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALS 337
++D Y L + V L +P V L ++L A +
Sbjct: 99 --DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396
K+I + G + + A+ F A L P+ +Y L + +
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAA 455
A+ A A+ P A + V+ G + A Y A+ L+P + A
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYY--EQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 456 LALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
LA +G +A L+ AD LA + ++EA+ Y AL
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHAD--SLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 513 RINSQNEAA 521
+ + AA
Sbjct: 333 EVFPEFAAA 341
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 10/311 (3%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
+ +E + L+ P+ I + +A G + A+ + +P + +
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDE 347
LLK + + P+ + L V + + A+ + EK++ +D
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406
+ YI GN+L + + AV A+ A L P+ + L Y + + A+
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
R A++ P A + + G +A+ Y +ALRL P + + LA + +
Sbjct: 261 RRAIELQPHFPDAYCNLANAL--KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 466 GRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522
G +AV L + L+ ++A H LA V LQEAL HY+ A+RI+ A
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 523 KGLERLEKQMK 533
+ K+M+
Sbjct: 377 SNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 74/442 (16%), Positives = 136/442 (30%), Gaps = 111/442 (25%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
L++L F+ R R+ H A++ P
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----------------------PLLA-- 67
Query: 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRG--- 159
E + + + G+ + AI + + +L + + + N
Sbjct: 68 ------EAYSNLGNVYKERGQLQEAI----------EHYRHALRLKPDFIDGYINLAAAL 111
Query: 160 --------AVACYKECLRHCPFFIEA----ITALAELGATPKDIISLFAQTPNRSGRAPF 207
AV Y L++ P L LG
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---------------------- 149
Query: 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE 267
R EA + + ++ PN + V G+
Sbjct: 150 ----------RLEEA------------KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 268 AILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SV 325
AI +FEK ++DP ++ Y++ +LK + + LS+ P+ V L V
Sbjct: 188 AIHHFEKAVTLDPNFLDAYIN-LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Query: 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R 384
+E+ A+ ++I + Y N L A + A L P
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYES 443
S L + + ++EA+ R+A++ P+ A A + V G+ ++A Y+
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEALMHYKE 364
Query: 444 ALRLEPGYLGA----ALALAEL 461
A+R+ P + A L E+
Sbjct: 365 AIRISPTFADAYSNMGNTLKEM 386
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 9e-18
Identities = 65/437 (14%), Positives = 140/437 (32%), Gaps = 80/437 (18%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNV 102
E + LG L + A+ + A+ P+ N
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----------------------DPD--NY 60
Query: 103 SAINENEVKYKIASCHFALGETKAAIVE-MEGIPSKARNLQMSLLMAKLYRNSRHNRGAV 161
A Y+ A+ A+G++KAA+ + + I K L L A
Sbjct: 61 IAY------YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE 114
Query: 162 ACYKECLRHCPFFIEAITALAELGATPKDIISL-FAQTPNRSGR-----APFDHL----- 210
+K+ L+ P E A ++L + + A SG A D +
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174
Query: 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL 270
+ R + A+C I + + + + +N +++ + +G ++ ++
Sbjct: 175 WDAEL--RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232
Query: 271 NFEKVRSIDP------------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318
+ +D + + E A L Y+ + ++ +PS E
Sbjct: 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292
Query: 319 VFVAL-----SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373
V + + A+ + ++++ ++ + L + + A+ +
Sbjct: 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352
Query: 374 RGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432
AQE + + +GL + + ++ Y K L + NA
Sbjct: 353 ETAQEHNENDQQIREGLEKAQRLLKQSQKRDY------------YKILGV-----KRNAK 395
Query: 433 GREKAKKFYESALRLEP 449
+E K + + AL+ P
Sbjct: 396 KQEIIKAYRKLALQWHP 412
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 16/228 (7%)
Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
L ALS ++ D + Y + + L+M + +AA+ +L+ D
Sbjct: 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94
Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV--------HASNASGRE 435
+ H L+ K+ EA ++ +K+ P + + + S A
Sbjct: 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154
Query: 436 KAKKF------YESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LH 488
+ + + L + AE + EG A+S L+ K D++
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVD 536
K++ ++ + +LS L+++ ++ ++++K K ++
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 50/261 (19%)
Query: 35 GETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRS 94
+ + + L + F +Y AI + L+
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---------------------- 172
Query: 95 SSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRN 153
E++ A C GE + AI +++ K N + ++ LY
Sbjct: 173 -CVWDA--------ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223
Query: 154 SRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGR--------- 204
+ +++ +ECL+ ++ K I S A+ R GR
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES--AEELIRDGRYTDATSKYE 281
Query: 205 -----APFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVD 259
P + + + C + + +E+LQ P+N++ L + A+
Sbjct: 282 SVMKTEP-SIAEYTVRSKERI-CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 260 AIIGKNDEAILNFEKVRSIDP 280
I DEAI ++E + +
Sbjct: 340 LIEEMYDEAIQDYETAQEHNE 360
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 80/505 (15%), Positives = 172/505 (34%), Gaps = 41/505 (8%)
Query: 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSL--STSNRSSSPNS 99
A L G+ FR+++Y AI Y AL+ S+ S+ S +
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEM 61
Query: 100 FNVS-AINENEVK--YKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRH 156
+ + + K + AS + LG+ A+ ++ + + N + +
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL---SLNGDFNDASIEPMLERNL 118
Query: 157 NRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216
N+ A++ KE T L+ A + + + F
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS-MASFFGIFKPELTF 177
Query: 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276
Y E+ G L+ + + + +E + +
Sbjct: 178 ANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTK------AARLFEEQLDKNNEDE 230
Query: 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDE 332
+ K + D+ + + P R ++ + ++ +R D
Sbjct: 231 KLKEK---LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDS 286
Query: 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH 391
+Y +K++++D + Y +G + ++ + A F A+EL P+ Y L
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346
Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP- 449
+ +K + EA + P++ + ++ +KA K Y+ A+ LE
Sbjct: 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT--DKNDFDKALKQYDLAIELENK 404
Query: 450 ---GYLGAALALAELHVIE-----GRNGDAVSLLERYLK-DWADDSLHVKLAQVFAATNM 500
Y+G A + + ++ +A +LLE+ K D + + LAQ+
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464
Query: 501 LQEALSHYEAALRINSQNEAAKKGL 525
+ EA++ +E + + E + +
Sbjct: 465 IDEAITLFEESADLARTMEEKLQAI 489
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 54/425 (12%), Positives = 116/425 (27%), Gaps = 36/425 (8%)
Query: 66 YKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125
+ A+ ++ + S R N++ +++K K A
Sbjct: 89 FADAMFDLSVLSLNGDFNDASIEPMLER-------NLNKQAMSKLKEKFGDIDTATATPT 141
Query: 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185
+ + S+ + A Y E + ++ L +
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201
Query: 186 ATPKD-IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA-----QCCIASNDYKGGLELFA 239
D F + + + + + + ND G E
Sbjct: 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261
Query: 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299
+ ++ FP ++ + MA + A + E F+K +D Y ++
Sbjct: 262 KAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS---NNSSVYYHRGQMNFIL 317
Query: 300 SKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIM 355
+ D +DP ++ L + + + ++ R
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377
Query: 356 KGNLLLSMKRPEAAVIAFRGAQELRPD----------LRSYQGLVHSYLQFSKVKEALYA 405
+L + A+ + A EL L L+ EA
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437
Query: 406 AREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA--ALALAELH 462
+A K P+S +A + + ++A +E + L A+ AE
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMK--LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495
Query: 463 VIEGR 467
++ R
Sbjct: 496 KVQQR 500
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 31/216 (14%), Positives = 76/216 (35%), Gaps = 22/216 (10%)
Query: 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274
+ HR Q +Y + F + + P NI +++A + K D+ F +
Sbjct: 307 YYHR---GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363
Query: 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFV---------- 321
+ P + ++ D + K + + ++ ++V
Sbjct: 364 AKRKFP---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420
Query: 322 ALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
L+ ++ A + EK+ ++D R I + L + + A+ F + +L
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480
Query: 382 DLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416
+ Q + + KV++ + + K + ++
Sbjct: 481 TMEEKLQAITFAEAA--KVQQRIRSDPVLAKKIQET 514
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 12/215 (5%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412
KGN K+ + A+ + A EL+ D Y L Y+ +K+ + + +A++
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKK-FYESALRLEP------GYLGAALALAELHVI 464
P +K L + G+ A +L + L L + +
Sbjct: 69 KPDYSKVLLRRASAN--EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126
Query: 465 EGRNGDAVSLLERYLK-DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523
+ + GD + + + + + ++ L + +E+ +
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186
Query: 524 GLERLEKQMKGVDPDAPEEDEENEV-EDAEGDQEE 557
E + D+ +E A EE
Sbjct: 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-16
Identities = 66/455 (14%), Positives = 139/455 (30%), Gaps = 60/455 (13%)
Query: 103 SAINENEVKYKI--ASCHFA--LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN---SR 155
S N+N ++ + CHF L E + ++ + E Q A + +
Sbjct: 2 SENNKNSLESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLK 61
Query: 156 HNRG----AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211
H +G A+ C ++ A + + A +I SL ++
Sbjct: 62 HLKGQNEAALECLRK----------AEELIQQEHADQAEIRSLVTW---------GNYAW 102
Query: 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271
+ R + Q + + K E F+ + + ++ +N+ A +
Sbjct: 103 VYYHMGRLSDVQIYV--DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL----- 323
FEK P + A+ ++ + L + ++P + V L
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383
+ E ++E E+++ P+ A+ + A E P+
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN- 279
Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443
+H + + M K L+L A +
Sbjct: 280 ---NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL-----------IGHAVAHLKK 325
Query: 444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQ- 502
A LA LH + + +A ++ L + + Q
Sbjct: 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385
Query: 503 ----EALSHYEAALRINSQNEAAKKGLERLEKQMK 533
+A+ H+ ++IN ++ +K ++L+K K
Sbjct: 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 63/509 (12%), Positives = 129/509 (25%), Gaps = 107/509 (21%)
Query: 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPN 98
KA +L + A+ ++A + +
Sbjct: 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ----------------------QE 84
Query: 99 SFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLM----------- 147
+ + I A ++ +G + ++ + +
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 148 AKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207
+L N A C+++ L P E + LA I+ + +
Sbjct: 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA---------IASYRLDNWPPSQNAI 195
Query: 208 DHLDSSRWLH-RYVEAQCCIA---------SNDYKGGLELFAELLQRFPNNIHILLEMAK 257
D L + L+ + +A + G +L E L++ P +L AK
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255
Query: 258 VDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317
+ D+AI +K P + + K + + R
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK------------VFQVMNLRE 303
Query: 318 EVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377
L E A+++ +K+ ++ + +L + E A F+
Sbjct: 304 NGMYGKRKLLELIGH--AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 378 ELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437
+ Q L Y F + +KA
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCE------------------------------DKA 391
Query: 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFA 496
+ +++ +L + + L DS LA +
Sbjct: 392 IHHFIEGVKINQKSREKEKMKDKLQ----------KIAKMRLSKNGADSEALHVLAFLQE 441
Query: 497 ATNMLQEALSHYEAALRINSQNEAAKKGL 525
+Q+A E L S +A
Sbjct: 442 LNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 22/238 (9%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS--------- 385
L E + + + R + + + M R I + + S
Sbjct: 79 ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138
Query: 386 --YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV--HASNASGREKAKKFY 441
+G ++ + A +A++ P++ + + N + A
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 442 ESALRLEPGYLGA----ALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQV 494
A+RL P AL L ++ G+ L+E L+ D + A+
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD--VLRSAAKF 256
Query: 495 FAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAPEEDEENEVEDAE 552
+ + +A+ + AL N + + + E + + E
Sbjct: 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 35/321 (10%), Positives = 84/321 (26%), Gaps = 19/321 (5%)
Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
A + L + + P + + + + + + P +
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP---EQV 174
Query: 287 DEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
A K + +L+ L + P + + + + L ++
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 343 IRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401
+ + + G +++ + + A L P + V+
Sbjct: 235 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQR 294
Query: 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAE 460
L +A PQ A+ G A ++ A L P + A +
Sbjct: 295 LLPVLCQAHGLTPQQVVAIASNGGGKQ--ALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352
Query: 461 LHVIEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNE 519
+ +L + + + A +Q L A + +
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412
Query: 520 AA-------KKGLERLEKQMK 533
A K+ LE +++ +
Sbjct: 413 VAIASHDGGKQALETVQRLLP 433
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 35/321 (10%), Positives = 82/321 (25%), Gaps = 25/321 (7%)
Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
A + L + + P + + + + + + P +
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP---QQV 242
Query: 287 DEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
A K + +L+ L + P + + + + L ++
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQA 302
Query: 343 IRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401
+ + + G +++ + + A L P + V+
Sbjct: 303 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR 362
Query: 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAE 460
L +A P+ A+ G A ++ A L P +A+A
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGK--QALETVQRLLPVLCQAHGLTPEQ---VVAIAS 417
Query: 461 LHVIEGRNGDAVSLLERYLKDWA----DDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516
+ LL + A + LS + AL +
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477
Query: 517 QNEAA-------KKGLERLEK 530
+ + L+ ++K
Sbjct: 478 NDHLVALACLGGRPALDAVKK 498
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 41/415 (9%), Positives = 97/415 (23%), Gaps = 57/415 (13%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQ---------YYKIVPKQNSTSSRSSLSTSNR 93
+ +R + QA KQ + ++ L +
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 94 SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYR 152
+ V AI N AL + + + +++ +
Sbjct: 166 AHGLTPEQVVAIASN------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 153 NSRHNRGAVACYKECLRHCPFFIEAI----TALAELGATPKDIISLFAQ----TPNRSGR 204
+ + + P + AI L T + ++ + Q TP
Sbjct: 220 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-TVQRLLPVLCQAHGLTPQ---- 274
Query: 205 APFDHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVD 259
V A + + L + + P + +
Sbjct: 275 --------------QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320
Query: 260 AIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSR 316
+ + + + P + A K + +L+ L + P +
Sbjct: 321 QALETVQRLLPVLCQAHGLTP---QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377
Query: 317 PEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375
+ + + L ++ + + +++ + +
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 437
Query: 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHA 428
A L P + + L A+ A+ AL +G A
Sbjct: 438 AHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPA 492
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 9e-14
Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 23/204 (11%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD-----------------LRSYQGLVHSYLQ 395
+ K + + + AV FR L D + L +Y +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA 454
+A +E ++ P + L+ ++ G+ + A + YE L+LE L A
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR--GQEKDALRMYEKILQLEADNLAA 124
Query: 455 ALALAELHVIEGRNGD-AVSLLERYLK-DWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
+ L + + + + L + T ++A + + +
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 513 RINSQNEAAKKGLERLEKQMKGVD 536
EA K L+++ + K V+
Sbjct: 185 LRFPSTEAQKT-LDKILRIEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/224 (11%), Positives = 74/224 (33%), Gaps = 27/224 (12%)
Query: 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307
++ +L+ G+N +A+ F + +++ + +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-------DRTEMY-----------YWT 44
Query: 308 DLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366
++ ++ L + ++ A + ++ ++ ++ + + +
Sbjct: 45 NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104
Query: 367 EAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423
+ A+ + +L D + G + YL + K+ L + + + + A
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYY-YLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163
Query: 424 GDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEG 466
G + R EKA+ + + P A L ++ IE
Sbjct: 164 GLSKLF--TTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEK 204
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 32/173 (18%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
+Y + ELLQ+ PNN+ L A++ G+ +A+ +EK+ ++ +
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-------D 120
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER 348
L + + E+ L K + +
Sbjct: 121 NLAA------NIFLGNYYYLTA-------------------EQEKKKLETDYKKLSSPTK 155
Query: 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKE 401
G L R E A + + P + + L +V
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 22/189 (11%), Positives = 56/189 (29%), Gaps = 17/189 (8%)
Query: 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMK----------------GNLLLSMKRPE 367
S E A+SY ++I ++ Y + +
Sbjct: 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD 71
Query: 368 AAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426
A + ++ + P+ + + + + K+AL + ++ + A +G+
Sbjct: 72 KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131
Query: 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486
+ A +K + L A + R A + L++ + +
Sbjct: 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
Query: 487 LHVKLAQVF 495
L ++
Sbjct: 192 AQKTLDKIL 200
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 1e-13
Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 5/217 (2%)
Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
P+ + L ++ E+ + A+ K++ + + ++L + +
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427
A++ ++ A + P +Y + ++ + V+ AL A++ P A A + +H
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 428 ASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486
SG +A Y +AL+L+P + A LA I D +++ + AD
Sbjct: 122 K--DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523
+L V +ML + A+ N K
Sbjct: 180 EKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 216
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 2/176 (1%)
Query: 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305
P + L +A + G +EA+ + K + P A +L+ + +
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 306 VHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364
+ + I P+ + + + + L E +D +GAL ++I+I+ + ++
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 365 RPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419
A+ ++R A +L+PD Y L H + ++ + + +
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 37/180 (20%)
Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQ-GLVHSYLQFSKVKEALYAA 406
H N+ E AV +R A E+ P+ + L Q K++EAL
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
+EA++ P A A +G+ + A + Y A+++ P + A
Sbjct: 67 KEAIRISPTFADAYSNMGNTL--KEMQDVQGALQCYTRAIQINPAFADA----------- 113
Query: 466 GRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525
H LA + + + EA++ Y AL++ A L
Sbjct: 114 ----------------------HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 4e-07
Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 6/211 (2%)
Query: 218 RYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272
+ ++ +A+ + + + L+ + L+ FP +A V GK EA++++
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKD 331
++ I P LK D + + I+P+ + L S+ + +
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVH 391
A++ ++++ Y + L + + + D L
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKL 422
+ S + + R+A+ + K+
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKI 217
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-13
Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 20/290 (6%)
Query: 230 DYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
Y+ + + P + + + + K + + + + +
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM--- 70
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL---SVLWERKDERGALSYAEKSIRI 345
+A L + + +S L S+ + ++ AL +
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--- 127
Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEA 402
+ M +LL + R + A + Q+ D + V K+++A
Sbjct: 128 --DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAEL 461
Y +E + L H A GR E A+ + AL + G+ + L L
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHM--AQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
Query: 462 HVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511
G+ + + LKD H + + A N + Y +
Sbjct: 244 SQHLGKPPEVTNRYLSQLKDAHRS--HPFIKEYRAKENDFDRLVLQYAPS 291
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 34/248 (13%), Positives = 70/248 (28%), Gaps = 15/248 (6%)
Query: 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYK 165
+ E + + A + + E++ PS A LQ + A+ + VA
Sbjct: 32 RDVERDVFLYRAYLAQRKYGVVLDEIK--PSSAPELQAVRMFAEYLASHSRRDAIVAELD 89
Query: 166 ECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225
+ L S++ N H S + Q
Sbjct: 90 REMSRSVDVTNTTFLLM--------AASIYFYDQNPDAALRTLHQGDSLECM-AMTVQIL 140
Query: 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN--DEAILNFEKVRSIDPYIM 283
+ + + ++ + + L A V G +A F+++ +
Sbjct: 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200
Query: 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEK 341
++ A + + ++ + L D PE + L VL + K Y +
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
Query: 342 SIRIDERH 349
H
Sbjct: 261 LKDAHRSH 268
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%)
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAE---KSIR 344
YA L +Y++ ++ + L + + P ++ +E A E +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403
+ + G +L+ + A+ ++ A + Y + + A+
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128
Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP----GYLGAALAL 458
+ ++ K +G + + KA + L L+P GYL A A
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAY--YYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN 186
Query: 459 AELHVIEGRNGDAVSLLERYLKDWADDSLHVK---------LAQVFAATNMLQEALSHYE 509
A + + G A E+ ++ A K +A + +A + ++
Sbjct: 187 AAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
Query: 510 AALRINSQNEAAKKGLER-LEKQ 531
L ++ N+ A GL+ LE
Sbjct: 246 NILALDPTNKKAIDGLKMKLEHH 268
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 25/256 (9%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFE---KVRSIDPYIMTY 285
N+Y +E+F +L + N+ +I A + K D A + E +
Sbjct: 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA---K 73
Query: 286 MDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEK 341
++ K+ + S + + D +R +++ + S + + + A+ Y EK
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133
Query: 342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYL-QFS 397
IR + G K A +F EL+P++ ++ ++ +
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
Query: 398 KVKEALYAAREAMKAMPQSAKALK-LVGDVH-----ASNASGR-EKAKKFYESALRLEPG 450
K A + ++ K + + + + KA +++ L L+P
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253
Query: 451 YLGA----ALALAELH 462
A + L H
Sbjct: 254 NKKAIDGLKMKLEHHH 269
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 16/217 (7%)
Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR 384
+E+ + A+S ++ Y + + + + E
Sbjct: 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
Query: 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYES 443
+ + ++ L A P+ A+ +L G + + A K Y
Sbjct: 107 TEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK--SDWPNAVKAYTE 164
Query: 444 ALRLEPGYLGA----ALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFA 496
++ P A ALA+L +A++ + ++ ++ +++ A
Sbjct: 165 MIKRAPEDARGYSNRAAALAKL----MSFPEAIADCNKAIEKDPNFVR--AYIRKATAQI 218
Query: 497 ATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
A AL +AA +++ E + K
Sbjct: 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 9e-09
Identities = 19/174 (10%), Positives = 51/174 (29%), Gaps = 11/174 (6%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412
+GN ++ + A+ + A EL D+ + + + + A+ +A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA---ALALAELHVIEGRN 468
+ K++ A G + + L A L +L
Sbjct: 68 GREMRADYKVISKSFARI--GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL----RNA 121
Query: 469 GDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
+ E + + + + + A+ Y ++ ++
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 26/225 (11%), Positives = 63/225 (28%), Gaps = 38/225 (16%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
+Y+ + + +++ ++K A IG + + +K + E
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK---SLTE 108
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER 348
+ ++ L ++ L AE ++
Sbjct: 109 H-------------------------RTADILTKL------RNAEKELKKAEAEAYVNPE 137
Query: 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407
++G + AV A+ + P+ R Y + + EA+
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 408 EAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGY 451
+A++ P +A A A + ++A +
Sbjct: 198 KAIEKDPNFVRAYIRKATAQ--IAVKEYASALETLDAARTKDAEV 240
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 5e-13
Identities = 44/292 (15%), Positives = 94/292 (32%), Gaps = 36/292 (12%)
Query: 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE--YAMLLKVKCDYSKLSKLVHDLLS 311
E + ++ K + R D Y T+ E V+ + K + + ++L
Sbjct: 39 EEEEAKHVLQKLQGLVDRLYCFR--DSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLG 96
Query: 312 IDPSRPEVF----VALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
+ AL+V + E A K+++++ + + G +
Sbjct: 97 SAQVEAQALMLKGKALNVTPDYSPE--AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT 154
Query: 368 AAVIAFRGAQELRPDLRSYQ--GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
+A F GA + S Q +V LQ E ++++ Q+ A+++
Sbjct: 155 SAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR---QAKLAVQM--- 208
Query: 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK---DW 482
S L YL + + A+S + K
Sbjct: 209 -----------DVLDGRSWYILGNAYLSLYFNTGQ---NPKISQQALSAYAQAEKVDRKA 254
Query: 483 ADDS-LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
+ + LH+ A + EAL + A ++ ++ ++L + +
Sbjct: 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 67/341 (19%)
Query: 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
++ + W+ EAQ + + + G E + E G
Sbjct: 26 WEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN---PFKDWPGAFEEGLKRLKEGDLP 82
Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SV 325
IL E + DP E + L
Sbjct: 83 VTILFMEAA----------------------------------ILQDPGDAEAWQFLGIT 108
Query: 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385
E ++E+ A+ ++ + + ++ + + + A A + + P +
Sbjct: 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168
Query: 386 -YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH----------ASNASGR 434
+ S ++ ++ + +A GD+ + SG
Sbjct: 169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228
Query: 435 -EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLK---DWAD 484
+A + +AL + P LGA LA R+ +AV R L+ +
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLA--NG----DRSEEAVEAYTRALEIQPGFIR 282
Query: 485 DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525
L +EA+S++ AL + ++ ++
Sbjct: 283 --SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP 321
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 22/207 (10%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSY 393
A+ E +++ D +H+ + G ++ A+ A R EL+PD + L S+
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------------EKAKK 439
S ++A R+ ++ P A + + G + K+
Sbjct: 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202
Query: 440 FYESALRLEPGYLGAAL--ALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQV 494
+ +A+RL+P + + L L + G AV L + L KL
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL--LWNKLGAT 260
Query: 495 FAATNMLQEALSHYEAALRINSQNEAA 521
A N +EA++ Y AL + +
Sbjct: 261 LANGNQSEEAVAAYRRALELQPGYIRS 287
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 48/298 (16%), Positives = 88/298 (29%), Gaps = 49/298 (16%)
Query: 264 KNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEV 319
+D ++K + + + + L V + DP E
Sbjct: 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100
Query: 320 FVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378
+ L + E + E A+S + + + + + + A R
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 379 LRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422
P L + ++ S L S E A++ P S
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP--- 217
Query: 423 VGDVH-----ASNASGR-EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGD 470
DV N SG +KA + +AL + P LGA LA ++ +
Sbjct: 218 --DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA--NG----NQSEE 269
Query: 471 AVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525
AV+ R L+ + L +EA+ H+ AL + ++ +
Sbjct: 270 AVAAYRRALELQPGYIR--SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 25/272 (9%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-------- 280
D + LF +Q+ P ++ + A + AI + + P
Sbjct: 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 137
Query: 281 YIMTYMDE------YAML---LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331
+++ +E +L L+ Y+ L + + L L
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP-AEEGAGGAGLGPSKRILGSLLSDSL 196
Query: 332 ERGALSYAEKSIRIDERHI--PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG 388
++R+D I G L + AV F A +RP+ +
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256
Query: 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRL 447
L + ++ +EA+ A R A++ P ++ +G G +A + + AL +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAVEHFLEALNM 314
Query: 448 EPGYLGAALALAELHVIEGRN-GDAVSLLERY 478
+ G + A+S+L +
Sbjct: 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALA 459
L R A++ PQ A ++ D G + + L L PG+ A L
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAEL--GMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 460 ELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516
+ + R+ +A LL++ + + + L + A + Y A ++
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPG--IALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 517 QNEAA 521
+
Sbjct: 123 EEPYI 127
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 7/181 (3%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393
L ++R + ++M + L M A +A + L P + L
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYL 452
+ EA ++A A P+ +G +G+ E A Y A +L P
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE--DAGQAEAAAAAYTRAHQLLPEEP 125
Query: 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512
L L + A V+ + E A
Sbjct: 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAE---QLACAR 182
Query: 513 R 513
Sbjct: 183 T 183
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 27/198 (13%), Positives = 66/198 (33%), Gaps = 7/198 (3%)
Query: 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287
+ D L ++ P + L +A + +G + ++ ++ P +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 288 EYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRID 346
+ + +++ + L+ P P + + L L + A + ++ ++
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKV---KEAL 403
+ LL +R + ++R + G V + S+ E L
Sbjct: 122 PEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQL 178
Query: 404 YAAREAMKAMPQSAKALK 421
AR +A+ S + L
Sbjct: 179 ACARTRAQAIAASVRPLA 196
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 9e-09
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423
++ R A RP ++ L + L A + + P +A+ +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 424 GDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480
G V R +A + A P + G AL L G+ A + R +
Sbjct: 64 GRVR--WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Query: 432 SGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHV 489
+ + +A+R P A L LA+ + G ++R L
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 490 KLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
+L +V EA + A ++
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 20/170 (11%), Positives = 41/170 (24%), Gaps = 12/170 (7%)
Query: 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH---LDSSRWL 216
+ + +RH P A LA+ +G L
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADA---------ELGMGDTTAGEMAVQRGLALHPGHPE 58
Query: 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276
+ + L + P + I L + G+ + A + +
Sbjct: 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
Query: 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326
+ P + + CD+ L L + + + L
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 7e-12
Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 8/220 (3%)
Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
+ ++ L +R + A K++ ID + + + P+
Sbjct: 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKL 89
Query: 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAM--PQSAKALKLVGD 425
A +R A R + + +EA EA + P+ ++ + +G
Sbjct: 90 ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149
Query: 426 VHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWA 483
V + +AK+++E +LRL AL +A+L E A + + +
Sbjct: 150 VSL--QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 484 DDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523
+ + ++ A S+ R+ + ++
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 10/241 (4%)
Query: 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276
H + + + + G + + + +++ G ++A + K
Sbjct: 6 HHHHHSSGLVPRGSHMG-DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64
Query: 277 SIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERG 334
IDP + A++ + + + + L+ D V L+E+K
Sbjct: 65 EIDPSSADAHAA-LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123
Query: 335 ALSYAEKSIR--IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVH 391
A ++ + + + G + L MK+P A F + L + +
Sbjct: 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183
Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPG 450
+ + A + Q+A++L L + + A + RL PG
Sbjct: 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA--KVFEDRDTAASYGLQLKRLYPG 241
Query: 451 Y 451
Sbjct: 242 S 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 20/199 (10%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSY 393
A E + + G ++ A+IA A+ L P + + L S+
Sbjct: 40 AALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99
Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR--------------EKAKK 439
AL + R + + PQ + + + +
Sbjct: 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159
Query: 440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFA 496
+AL + P +L L+ + A + L R ++ D A L KL A
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ--LWNKLGATLA 217
Query: 497 ATNMLQEALSHYEAALRIN 515
N QEAL Y AL IN
Sbjct: 218 NGNRPQEALDAYNRALDIN 236
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 37/239 (15%)
Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
P R E + +L E + + A+ + +D + I + + A
Sbjct: 48 CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107
Query: 369 AVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKA 412
A+ + R +P + Q + ++ +E A++
Sbjct: 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167
Query: 413 MPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGY------LGAALALAELHVIE 465
P A+ +G ++ N S + A A+ L P LGA LA
Sbjct: 168 NPNDAQLHASLGVLY--NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA--NG---- 219
Query: 466 GRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
R +A+ R L + + +A ++ + A A+ +
Sbjct: 220 NRPQEALDAYNRALDINPGYVR--VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 33/224 (14%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVH 391
+ + + +G +L + A +AF + P+ GL
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65
Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451
+ + K A+ A A P+ + H +N A + L +P Y
Sbjct: 66 AENE--KDGLAIIALNHARMLDPKDIAVHAALAVSH-TNEHNANAALASLRAWLLSQPQY 122
Query: 452 LGAALALAELHVIE---------------GRNGDAVSLLERYLK---DWADDSLHVKLAQ 493
+ V + +LL L+ + A LH L
Sbjct: 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ--LHASLGV 180
Query: 494 VFAATNMLQEALSHYEAALRINSQNE-------AAKKGLERLEK 530
++ +N A ++ A+ + + A R ++
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 42/281 (14%), Positives = 86/281 (30%), Gaps = 24/281 (8%)
Query: 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278
E + + F + Q P + A K+ AI+ R +
Sbjct: 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84
Query: 279 DP-YIMTYM------------DE-YAML---LKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321
DP I + + A L L + Y +L + D V
Sbjct: 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV-DIDDLNVQS 143
Query: 322 ALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
+ R + ++ ++ + G L ++A R A ELRP
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKK 439
D + + L + ++ +EAL A A+ P + + + ++ + + A K
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS--NMSQYDLAAK 261
Query: 440 FYESALRLEPGYLGAA--LALAELHVIEGRNGDAVSLLERY 478
A+ ++ G + + ++++ R
Sbjct: 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 1e-11
Identities = 92/625 (14%), Positives = 193/625 (30%), Gaps = 227/625 (36%)
Query: 4 PKEQITALIDQGL---YDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDRE- 58
+E + +++ L Y FL+S I E P + I D L+ D +
Sbjct: 75 QEEMVQKFVEEVLRINYK-------FLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 59 ------YR-RAIHTYKQALQYYKIVPKQNST------SSRSSLSTSNRSSSPNSFNVSAI 105
R + +QAL ++ P +N S ++ ++ S+ V
Sbjct: 126 FAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVLGSGKTWVA----LDVCLSYKVQCK 179
Query: 106 NENEVKY-KIASCHFALGETKAAIVEM-------------------EGIPSKARNLQMS- 144
+ ++ + + +C+ + ++EM I + ++Q
Sbjct: 180 MDFKIFWLNLKNCN-----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 145 --LLMAKLYRNS----RHNRGAVACYKECLR----HCPFFI------------------- 175
LL +K Y N + V + C +
Sbjct: 235 RRLLKSKPYENCLLVLLN----V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 176 ------------EAITALAE-LGATPKDI-----------ISLFA----QTPNRSGRAPF 207
E + L + L P+D+ +S+ A +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--W 347
Query: 208 DHLDSSRWLHRYVEAQCCIA---SNDYKGGLELFAELLQRFPNNIHI---LLEMAKVDAI 261
H++ + L +E+ + +Y+ ++F + L FP + HI LL
Sbjct: 348 KHVNCDK-LTTIIES--SLNVLEPAEYR---KMF-DRLSVFPPSAHIPTILLS------- 393
Query: 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL-LSIDPSRPEVF 320
++ F+ ++S ++ + +Y+++ K + + + + L + +
Sbjct: 394 -------LIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEY 443
Query: 321 VAL--SVLWERKDERGALSYAEKSIRIDE---RHIPGYIMKGNLLLSMKRPEAAVIAFRG 375
AL S++ + S +D+ HI G+ +K + FR
Sbjct: 444 -ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKN------IEHPERMTLFR- 494
Query: 376 AQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435
+ D R +L+ K+ R A S L + +
Sbjct: 495 --MVFLDFR--------FLE-QKI-------RHDSTAWNASGSILNTLQQL--------- 527
Query: 436 KAKKFYESALRL-EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV 494
KFY+ + +P Y E V+ + +L ++ + K
Sbjct: 528 ---KFYKPYICDNDPKY-------------ERL----VNAILDFLPKIEENLICSK---- 563
Query: 495 FAATNMLQEALSH-----YEAALRI 514
T++L+ AL +E A +
Sbjct: 564 --YTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 6e-09
Identities = 87/591 (14%), Positives = 173/591 (29%), Gaps = 146/591 (24%)
Query: 38 SPHLKAENLIILGDSLFRDRE--YRRAIHT-----YKQALQYYKIVPKQNS------TSS 84
S + L + +L +E ++ + YK + K +Q S
Sbjct: 57 SKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE-MEGIPSKARNLQM 143
R L N+ + +NVS + + K+ L K +++ + G K
Sbjct: 116 RDRLYNDNQVFAK--YNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGS-GK------ 163
Query: 144 SLLMAKLYRNSRHNRGAVACYKEC------LRHCPFFIEAITALAELGATPKDIISLFAQ 197
+ + + + + V C + L++C T L L I +
Sbjct: 164 TWVALDVCLSYK-----VQCKMDFKIFWLNLKNC---NSPETVLEMLQKLLYQIDPNWTS 215
Query: 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELF------AELLQRFPNNIHI 251
+ S L R + S Y+ L L A+ F + I
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRL------LKSKPYENCL-LVLLNVQNAKAWNAFNLSCKI 268
Query: 252 LL---EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD 308
LL D + S+D + MT + L +K + L +
Sbjct: 269 LLTTRFKQVTDFLSAAT-------TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 309 LLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKRPE 367
+L+ +P LS++ E + A D +H+ + + S+
Sbjct: 322 VLTTNP------RRLSIIAESIRDGLA--------TWDNWKHVNCDKLTTIIESSLN--- 364
Query: 368 AAVIAFRGAQELRP-DLRSYQGLVHSYLQFS----------KVKEALYAA---REAMKAM 413
L P + R + + S + ++ + M +
Sbjct: 365 ----------VLEPAEYRKM------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH--VIEGRNGDA 471
+ K S + K ++ LE LH +++ N
Sbjct: 409 NKLHK---------YSLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSIVDHYNIPK 457
Query: 472 VSLLERYLKDWADD------SLHVKLAQVFAATNMLQEALSHY---EAALRINSQNEAAK 522
+ + + D H+K + + + + E +R +S A
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 523 KG----LERLEKQMKGVDPDAPEEDE-ENEVED----AEGD---QEETDLL 561
L++L+ + + P+ + N + D E + + TDLL
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 32/301 (10%), Positives = 73/301 (24%), Gaps = 17/301 (5%)
Query: 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289
+ L + + P + + + + + + P +
Sbjct: 207 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP---DQVVAI 263
Query: 290 AMLLKVKCDYSKLSKLVHDL---LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRI 345
A + K + +L+ L + P + + + + L ++ +
Sbjct: 264 ASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGL 323
Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404
+ +++ + + A L PD + V+ L
Sbjct: 324 TPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 383
Query: 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464
+A P A+ G A ++ A L P +A+A
Sbjct: 384 VLCQAHGLTPDQVVAIASNGGKQALETV--QRLLPVLCQAHGLTPDQ---VVAIASHDGG 438
Query: 465 EGRNGDAVSLLERYLKDWADDS----LHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520
+ LL + A +Q+ L A +
Sbjct: 439 KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV 498
Query: 521 A 521
A
Sbjct: 499 A 499
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 52/519 (10%), Positives = 123/519 (23%), Gaps = 50/519 (9%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQ---------YYKIVPKQNSTSSRSSLSTSNR 93
+ +R + QA KQ + + L +
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ 319
Query: 94 SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMA----- 148
+ V AI ++ + AL + + + +A L ++A
Sbjct: 320 AHGLTPDQVVAIASHDGGKQ------ALETVQRLLPVLC----QAHGLTPDQVVAIASNG 369
Query: 149 KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD 208
+ + + + P + AI + A L
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQ----AHGLT 425
Query: 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268
Q A + L + + P + + + +
Sbjct: 426 PDQVVAIASHDGGKQ---ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482
Query: 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLW 327
+ + + P + + + +L ++ + P + +
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 542
Query: 328 ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSY 386
+ + L ++ + + G +++ + + A L + +
Sbjct: 543 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAI 602
Query: 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESAL 445
+ V+ L +A P A+ A ++ A
Sbjct: 603 ASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK--QALETVQRLLPVLCQAH 660
Query: 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV----KLAQVFAATNML 501
L P +A+A + LL + V A +
Sbjct: 661 GLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETV 717
Query: 502 QEALSHYEAALRINSQNEAA-------KKGLERLEKQMK 533
Q L A + A K+ LE +++ +
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 756
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 58/517 (11%), Positives = 129/517 (24%), Gaps = 64/517 (12%)
Query: 43 AENLIILGDSLFRDREYRRAIHTYKQALQ---------YYKIVPKQNSTSSRSSLSTSNR 93
+ G +R + QA KQ + + L +
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590
Query: 94 SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYR 152
+ V AI N + AL + + + +++ +
Sbjct: 591 AHGLTQVQVVAIASNIGGKQ------ALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 644
Query: 153 NSRHNRGAVACYKECLRHCPFFIEAI----TALAELGATPKDIISL---FAQTPNRSGRA 205
+ + + P + AI L + + L T + A
Sbjct: 645 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQV-VA 703
Query: 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265
+ + L L + + P+ + + +
Sbjct: 704 IASNNGGKQALETVQRL------------LPVLCQAHGLTPDQVVAIASNGGGKQALETV 751
Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
+ + + P + A + K + +L+ L VA++
Sbjct: 752 QRLLPVLCQAHGLTP---AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808
Query: 326 LWERKDERGALSYA----EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
K + ++ + + + +++ + + L P
Sbjct: 809 NIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTP 868
Query: 382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441
D Q + + K+AL + + + Q L L V A ++G ++A +
Sbjct: 869 D----QVVAIASNI--GGKQALETVQRLLPVLCQ-DHGLTL-DQVVAIASNGGKQALETV 920
Query: 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNML 501
+ L + G N LE + L Q T
Sbjct: 921 QRLLPVLCQDHGLTPDQVVAI---ASNSGGKQALETVQRLLPV------LCQDHGLTPNQ 971
Query: 502 QEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPD 538
A++ + S L R + + + D
Sbjct: 972 VVAIASNGGKQALESIVAQ----LSRPDPALAALTND 1004
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 36/201 (17%), Positives = 79/201 (39%), Gaps = 18/201 (8%)
Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383
+D R A + E +++ D ++ ++++ + +K + A +FR A ++PD
Sbjct: 17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76
Query: 384 --RSYQGLVHSYLQFSKVKEALYAAREAMKAM--PQSAKALKLVGDVHASNASGREKAKK 439
+ G + ++ E++ +A+ P A G ++ A+
Sbjct: 77 EINNNYGWFL-CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC-SAKQGQFGLAEA 134
Query: 440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-----LHVKLAQV 494
+ + +L +P + A LA ++ G+ GDA ++Y L K+A+
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK- 193
Query: 495 FAATNMLQEALSHYEAALRIN 515
L A + YE ++
Sbjct: 194 -----ALGNAQAAYEYEAQLQ 209
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 17/156 (10%)
Query: 376 AQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR- 434
A++ L Y++ ++A + +A+K+ P++ A + +++
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL--KVN 58
Query: 435 EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSL- 487
+KA++ + AL ++P G L L R ++++ ++ L D +
Sbjct: 59 DKAQESFRQALSIKPDSAEINNNYGWFL-CGRL----NRPAESMAYFDKALADPTYPTPY 113
Query: 488 --HVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
++ A A ++ + +L Q A
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 29/230 (12%), Positives = 68/230 (29%), Gaps = 14/230 (6%)
Query: 301 KLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNL 359
++ +++ D R ++ + A + +++ I + G
Sbjct: 27 RMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86
Query: 360 LLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416
L +AA AF EL P +G+ Y + K A + P
Sbjct: 87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG--RDKLAQDDLLAFYQDDPND 144
Query: 417 AKALKLVGDVHASNASGREKA--KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 474
+ + K K+ +E + + + G+ L + + +
Sbjct: 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE-QTLMERLKAD 203
Query: 475 LERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
++ + L + + + L A + ++ A+ N N
Sbjct: 204 ATDNTSLAEHLSE--TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 42/287 (14%)
Query: 231 YKGGLELFAELLQRF----PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
+ L ++L +L E + +G A +F +
Sbjct: 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA----------- 69
Query: 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRI 345
L+I P PEVF L L + + A + + +
Sbjct: 70 -----------------------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405
D + ++ +G L R + A + P+ ++ Q K+A
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 166
Query: 406 AREAMKAMPQSAKALKLVGDV--HASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463
++ + + +V + S + E+ K L L + ++
Sbjct: 167 LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226
Query: 464 IEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYE 509
G A +L + + + + + H + Q+ L+ +
Sbjct: 227 SLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 6e-10
Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 17/196 (8%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393
A K+I ++ YI NLL S+ E A+ + A EL +Y G + Y
Sbjct: 42 AAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101
Query: 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYL 452
+ KEA +A++A ++ ++G V + + A + + A+ L
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL--VKLEQPKLALPYLQRAVELNENDT 159
Query: 453 GA----ALALAELHVIEGRNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEAL 505
A + LA G +A+S + AD +A ++AL
Sbjct: 160 EARFQFGMCLANE----GMLDEALSQFAAVTEQDPGHAD--AFYNAGVTYAYKENREKAL 213
Query: 506 SHYEAALRINSQNEAA 521
+ A+ I + A
Sbjct: 214 EMLDKAIDIQPDHMLA 229
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 43/246 (17%), Positives = 87/246 (35%), Gaps = 18/246 (7%)
Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTY 285
+ + + L + G ++A F K + + Y
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS---EFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIR 344
++ +A LL + + L +D S + +V ++ + A EK++R
Sbjct: 61 IN-FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKE 401
+ + M G +L+ +++P+ A+ + A EL + R G+ + + E
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG--MLDE 177
Query: 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA----AL 456
AL + P A A G +A EKA + + A+ ++P ++ A L
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYK--ENREKALEMLDKAIDIQPDHMLALHAKKL 235
Query: 457 ALAELH 462
H
Sbjct: 236 LGHHHH 241
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 23/186 (12%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411
+ G L ++ R +AA+ F A + P + L + L+ V AL + +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 412 AMPQSAKA-------LKLVGDVHASNASGR---EKAKKFYESALRLEPGYLGA----ALA 457
P+ + G+ E+A + A R+ P Y L
Sbjct: 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127
Query: 458 LAELHVIEGRNGDAVSLLER--YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515
A L G A + L++ L+D + + LA+++ + L EAL+ Y AL
Sbjct: 128 YALL----GERDKAEASLKQALALEDTPE--IRSALAELYLSMGRLDEALAQYAKALEQA 181
Query: 516 SQNEAA 521
++
Sbjct: 182 PKDLDL 187
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 32/203 (15%), Positives = 72/203 (35%), Gaps = 21/203 (10%)
Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL---LSIDPSRPEV 319
G+ D A+ FE+ +P + L + + ++ + + ++ P
Sbjct: 19 GRYDAALTLFERALKENP---QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 320 F----VALSVLWERKDERG--------ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
+ A L+ + ++R ALS + + R++ R+ P ++ +G + + +
Sbjct: 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135
Query: 368 AAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427
A + + A L L YL ++ EAL +A++ P+
Sbjct: 136 KAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195
Query: 428 ASNASGR-EKAKKFYESALRLEP 449
G+ E+A +
Sbjct: 196 --LLKGKAEEAARAAALEHHHHH 216
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 360 LLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418
S + PEA + A + P + + L YL + +L A R+A++ ++A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 419 ALKLVGDVHASNASGR--EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476
+ V AS + + + AL L+ + A + LA ++ A+ L +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139
Query: 477 RYLKDWADDSLHVKLAQVFAATNMLQEA 504
+ + + +L + +LQ
Sbjct: 140 KVMDLNSPRINRTQLVESINMAKLLQRR 167
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Query: 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK 436
Q +R + + + +H + + L A ++ ++A PQ+++ L+G+ +
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-YSN 62
Query: 437 AKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLLERYLK-DWADDSLHVKLA 492
+ Y AL+L ALA + + +++++ L D + + + LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530
+A+ ++ + +NS + +E +
Sbjct: 123 SDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVH 391
L + IR + ++ + + G L +++A+R A +LR + L + V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 392 SYL-QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP 449
Y + +A+ AL L+ +A + ++ + L
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ--ANYAQAIELWQKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 13/137 (9%), Positives = 48/137 (35%), Gaps = 4/137 (2%)
Query: 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286
+ + + L+ + ++ P N + + ++L + + +
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81
Query: 287 DEYAMLLKVKCDYSKLSK---LVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
A +L + ++ ++ L++D + + L S + + + A+ +K
Sbjct: 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141
Query: 343 IRIDERHIPGYIMKGNL 359
+ ++ I + ++
Sbjct: 142 MDLNSPRINRTQLVESI 158
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 52.8 bits (128), Expect = 3e-08
Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 17/178 (9%)
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411
Y KG R AV+ + L +Y++ V ++
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 412 AMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGA----ALALAELHVIEG 466
P + K ++G + + + A P +AL L G
Sbjct: 71 DAPDNVKVATVLGLTYVQV--QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL----G 124
Query: 467 RNGDAVSLLERYLK---DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
R +A+ + L + +H +A + +EAL H++ A ++
Sbjct: 125 RFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 8/156 (5%)
Query: 310 LSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
D +V + L + E+S+ ++ + G + +++ +
Sbjct: 35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL 94
Query: 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427
AV E P L + + EA+ + + A+ P K + + +
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 428 ASNASGR-EKAKKFYESALRLEPGYLGAALALAELH 462
GR E+A ++ A L+ G ++ LA +
Sbjct: 155 --EQMGRHEEALPHFKKANELDEGA---SVELALVP 185
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEP 449
S L+ + + EA A + P+ +A + +G A N + A A L+P
Sbjct: 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDP 82
Query: 450 GYLGAALALAELHVIEGRNGDAVSLLERYLK 480
+ ALA H E A++ L +L
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLL 113
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-L 383
+ + + A E + + + G ++ A+IA A+ L P +
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85
Query: 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415
+ L S+ AL + R + + PQ
Sbjct: 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406
+ + +G +L + A +AF + P+ +++ L + + K A+ A
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451
A P+ + H N A + L +P Y
Sbjct: 75 NHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLHVKLAQ 493
+A +E+ + EP A +L ++G A+ L D D ++H LA
Sbjct: 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93
Query: 494 VFAATNMLQEALSHYEAALRIN 515
+ AL+ A L
Sbjct: 94 SHTNEHNANAALASLRAWLLSQ 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 4/139 (2%)
Query: 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK 330
+R + + + + K+ L +D F+ L +
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 331 DE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGL 389
AL +D L + + A F A+ L +++ L
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 390 VHSYLQFSKVKEALYAARE 408
+ + EA+ A ++
Sbjct: 126 ---AARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 4/129 (3%)
Query: 407 REAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465
+ + L +G +G+ + A+K +++ L+ L L
Sbjct: 8 AMLRGLSEDTLEQLYALGFNQY--QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 466 GRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524
G A+ ++ A+ L A S + +A + + A +
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 525 LERLEKQMK 533
R ++
Sbjct: 126 AARAGAMLE 134
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 7/140 (5%)
Query: 372 AFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430
+ L D L L + Q K +A + A+ +G
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-- 63
Query: 431 ASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV 489
+ G E+A + Y ++ AE H+ G A S A H
Sbjct: 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123
Query: 490 KLAQVFAATNMLQEALSHYE 509
LA A ML EA++ +
Sbjct: 124 ALAA--RAGAML-EAVTARK 140
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 24/189 (12%)
Query: 360 LLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEALYAAREAMKAMP-Q 415
LL + A E L Y+ + L A E + P +
Sbjct: 443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA--ELLTGDYDSATKHFTEVLDTFPGE 500
Query: 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475
A L L + +G KFY++ G + AA LA EG AV L
Sbjct: 501 LAPKLALA---ATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557
Query: 476 ERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGV 535
+ S H A++ +A L S +E ++ + ++++ +
Sbjct: 558 DEVP----PTSRHFTTARLTSA-----------VTLLSGRSTSEVTEEQIRDAARRVEAL 602
Query: 536 DPDAPEEDE 544
P P +
Sbjct: 603 PPTEPRVLQ 611
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 21/154 (13%), Positives = 39/154 (25%), Gaps = 11/154 (7%)
Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322
G + I + + A Y + L +D F+
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 323 LSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
L + + A+ +D LL A AQEL
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415
+ +F ++ + + EA+K +
Sbjct: 121 NXP----------EFXELSTRVSSMLEAIKLKKE 144
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 2/148 (1%)
Query: 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457
+ + + + L + + E A +++ L+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 458 LAELHVIEGRNGDAVSLLERYLK-DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516
L G+ A+ D + A+ L EA S A + +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 517 QNEAAKKGLERLEKQMKGVDPDAPEEDE 544
+ R+ ++ + + E
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 14/155 (9%)
Query: 367 EAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425
+ E+ L L + Q ++A + ++ +G
Sbjct: 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63
Query: 426 VHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484
A G+ + A Y ++ AE + G +A S L
Sbjct: 64 CR--QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ----- 116
Query: 485 DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519
+L L +S A+++ + +
Sbjct: 117 -----ELIANXPEFXELSTRVSSMLEAIKLKKEMK 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 1/132 (0%)
Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
+ E + + + + + +I +M + YA K + L
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 312 IDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370
D + + L ++ ++ + A + + + G L +K P A
Sbjct: 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124
Query: 371 IAFRGAQELRPD 382
F + D
Sbjct: 125 ECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Query: 376 AQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434
+ D + + + +++EA R + + + ++ +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--IKEQ 85
Query: 435 -EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQ 493
++A Y A L + + A E ++ D+ L +K
Sbjct: 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145
Query: 494 VFAA 497
A
Sbjct: 146 YLDA 149
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 14/109 (12%)
Query: 435 EKAKKFYESALRLEPGYLGAAL-----ALAELHVIEGRNGDAVSLLERYLKDWADDSLHV 489
A Y AL L+ A+ A L + A + + ++ D V
Sbjct: 45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--EDYDKAETEASKAIEK---DGGDV 99
Query: 490 K----LAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKG 534
K +Q L +A+ + + + +N+ ++ L + G
Sbjct: 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSSG 148
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-05
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 14/135 (10%)
Query: 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA----ALALAEL 461
+ A+ LK G+ E A FY A+ L P A A ++L
Sbjct: 1 GPLGSEEDSAEAERLKTEGNE-QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL 59
Query: 462 HVIEGRNGD---AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518
G D A+ + Y K + ++ ++ N EA+++Y+ AL ++ N
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYG------RMGLALSSLNKHVEAVAYYKKALELDPDN 113
Query: 519 EAAKKGLERLEKQMK 533
E K L+ E +++
Sbjct: 114 ETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 310 LSIDPSRPEVF----VALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365
+ ++P+ F A S L + GA+ E++I ID + Y G L S+ +
Sbjct: 39 IELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95
Query: 366 PEAAVIAFRGAQELRPD 382
AV ++ A EL PD
Sbjct: 96 HVEAVAYYKKALELDPD 112
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 14/179 (7%)
Query: 357 GNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLV--HSYL---QFSKVKEALYAAREAMK 411
+L ++ +P + + L H YL + A E ++
Sbjct: 168 ESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ 227
Query: 412 AMPQSAKALKLVGDVH-------ASNASGREKAKKFYESALRLEPGYLGAAL--ALAELH 462
+ P+ A V + ++ + L + + A
Sbjct: 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287
Query: 463 VIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521
+++G+ ++ + + +V L +V+ M +EA Y A +
Sbjct: 288 LVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 27/178 (15%)
Query: 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288
EL E++Q P + E A VD + L+ +++ +++ I +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP--LDEKQLAALNTEIDNIVT- 269
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV-LWERKDERGALSYAEKSIRIDE 347
L + ++ +V + + I ++
Sbjct: 270 ---------------------LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308
Query: 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405
+ Y++ G + A A+ A LRP + + + + + V +
Sbjct: 309 SWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY-WIENGIFQTSVPYVVPY 364
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 309 LLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367
+L+ + L E + AL + ++ D + + G L
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 368 AAVIAFRGAQELRPD 382
A A+
Sbjct: 71 GARQAWESGLAAAQS 85
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 313 DPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
DP P AL + + AL+ E+ + D ++ Y G L + R + A+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 372 AFRGAQELRP---DLRSYQGLVHSYLQFSKVKEALY 404
+ E+ + L + L+ ++ +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 1/103 (0%)
Query: 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV 494
+A ++ LA A+ + + A LL ++ D+S +A++
Sbjct: 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL 82
Query: 495 -FAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVD 536
L E L N N L Q+ +
Sbjct: 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 6e-04
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR 384
+ ++ + ++ EK+I++D ++MKG L +++R E AV + + D
Sbjct: 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74
Query: 385 SYQ-----GLVHSYLQFSKVKEALYAAREAMK 411
+ Y++ + A K
Sbjct: 75 NKDVWAAKADALRYIE--GKEVEAEIAEARAK 104
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.98 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.98 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.9 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.89 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.88 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.85 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.85 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.79 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.69 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.67 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.66 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.66 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 99.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.58 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.54 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.52 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.5 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.45 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.43 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.42 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.32 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.18 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.06 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.06 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.93 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.91 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.72 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.67 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.66 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.6 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.29 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 98.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.15 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 98.09 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 98.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.92 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.33 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.32 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.2 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.16 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.94 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.9 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.89 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.84 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.39 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.09 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 96.07 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.53 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.47 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.99 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.81 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.66 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.58 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.41 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.12 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.72 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.34 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.65 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.21 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.46 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.69 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-46 Score=357.59 Aligned_cols=380 Identities=21% Similarity=0.269 Sum_probs=367.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccH
Q 008550 113 KIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI 191 (561)
Q Consensus 113 ~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 191 (561)
.+|..+.+.|++++|+..++.+ ...|.++.++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l---------- 73 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL---------- 73 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH----------
Confidence 3688999999999999999885 55689999999999999999999999999999999999999988777
Q ss_pred hHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008550 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (561)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 271 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 74 ------------------------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 74 ------------------------------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp ------------------------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ------------------------------HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
|+++++.+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++.. |++++|+..|++++..+|.++
T Consensus 124 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 203 (388)
T 1w3b_A 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203 (388)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
.++..+|.++...|++++|+..|++++..+|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 5699999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 008550 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
. |++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..|+. .++..+|.++...|++++|+..|
T Consensus 284 ~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 284 K-GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp H-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred HHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 509 EAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 509 ~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+++++++|+++.++..++.+...++
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999987765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=355.87 Aligned_cols=381 Identities=16% Similarity=0.200 Sum_probs=364.9
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHH
Q 008550 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA 127 (561)
Q Consensus 48 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 127 (561)
.+|..+++.|+|++|+..|+++++.+|+++ .++..++.++...|++++|
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------------------------~~~~~l~~~~~~~~~~~~a 52 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNT-------------------------------GVLLLLSSIHFQCRRLDRS 52 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------------------HHHHHHHHHHHHcCCHHHH
Confidence 468889999999999999999999987544 5788899999999999999
Q ss_pred HHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC
Q 008550 128 IVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (561)
Q Consensus 128 ~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (561)
+..++. +...|.++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 53 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------- 107 (388)
T 1w3b_A 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL------------------------- 107 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------
Confidence 999988 455688999999999999999999999999999999999998888777
Q ss_pred CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHH
Q 008550 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 286 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 108 ---------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 108 ---------------AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp ---------------HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
..+|.++...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
+++|+..|+++++..|++ .++..+|.++...|++++|+..|+++++..|+++.++..+|.++... |++++|+..++++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 331 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 999999999999999987 67999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
++..|+++.++..+|.++...|++++|+..|+++++..|+. .++..+|.++..+|+
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999987 899999999988774
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=379.09 Aligned_cols=481 Identities=18% Similarity=0.155 Sum_probs=416.1
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
+...++.+...|+++.|+.+...++...+ ....++.+|.+++..|++++|+..|++++...
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 147 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITG---------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---------- 147 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG----------
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCC---------CchHHHHHHHHHHHcCcHHHHHHHHHHHhccc----------
Confidence 45567778888888888888888776532 11466788888888999999988888876542
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCc----------------ccchhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSK----------------ARNLQMSLL 146 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~----------------~~~~~~~~~ 146 (561)
.+..++..++.+|.+.|++++|+..|+++ +.. +.+..+++.
T Consensus 148 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (597)
T 2xpi_A 148 ----------------------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL 205 (597)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHH
T ss_pred ----------------------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHH
Confidence 33468999999999999999999999963 333 345789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhh-HHHHHHHHHHH
Q 008550 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSR-WLHRYVEAQCC 225 (561)
Q Consensus 147 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~ 225 (561)
+|.+|.+.|++++|+..|+++++.+|.+..++..++.++...+................+ ..... ...+...+..+
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK---EDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG---GGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc---chHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877655443332211110000000 00000 00111225566
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
...|++++|+.+|+++++. |.++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|...
T Consensus 283 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6789999999999999887 788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-
Q 008550 306 VHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL- 383 (561)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 383 (561)
+++++...|.++.++..+|.++.. |++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|++
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh------CCCC-HHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL------EPGY-LGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~ 456 (561)
.++..++.++...|++++|+..|+++++..|.++.++..+|.++... |++++|+..|+++++. +|++ ..++.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 67999999999999999999999999999999999999999999998 9999999999999998 5654 67999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.+|.++...|++++|+..++++++..|++ .++..+|.+|...|++++|.+.|+++++++|+++.++..++.++.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999976 899999999999999999999999999999999999999988753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=353.56 Aligned_cols=435 Identities=13% Similarity=0.094 Sum_probs=386.9
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 120 (561)
.....+..++..+.+.|++++|+..|++++...|+. ..++.++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--------------------------------~~~~~l~~~~~~ 129 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--------------------------------NDAFWLAQVYCC 129 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc--------------------------------hHHHHHHHHHHH
Confidence 456678899999999999999999999999887522 367789999999
Q ss_pred cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccc
Q 008550 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPN 200 (561)
Q Consensus 121 ~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (561)
.|++++|+..++++...+.++.++..+|.+|.+.|++++|+..|++ ..|......... ...
T Consensus 130 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~-----~~~----------- 190 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNAN-----KLL----------- 190 (597)
T ss_dssp TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC--------------------------
T ss_pred cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccc-----ccc-----------
Confidence 9999999999999876788899999999999999999999999986 345442211100 000
Q ss_pred ccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------
Q 008550 201 RSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAK----------------------- 257 (561)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~----------------------- 257 (561)
......+......+..|.++...|++++|+..|+++++.+|+++.++..++.
T Consensus 191 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 191 -----MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp -----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred -----ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 0001122334445566999999999999999999999999999988777654
Q ss_pred ---------------HHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH
Q 008550 258 ---------------VDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (561)
Q Consensus 258 ---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (561)
.|...|++++|+..|+++++. |.+...+..++.++...|++++|+..|++++...|.+..++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHH
Confidence 334678899999999999888 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
++.++.. |++++|+..+++++...|.+..++..+|.+|...|++++|+..|+++++..|.+ .+|..++.++...|+++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999987 57999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+|+..|++++...|++..++..+|.++... |++++|+..|+++++..|.++.++..+|.++.+.|++++|++.|+++++
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQL-GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999999999998
Q ss_pred h------CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 481 D------WAD--DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 481 ~------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
. .|+ ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...+
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 8 555 3799999999999999999999999999999999999999999998876
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=336.20 Aligned_cols=450 Identities=16% Similarity=0.174 Sum_probs=362.0
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
...+..++.+|..++..|+|++|+..|++++..+|+ ..+++.+|.++.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------~~~~~~la~~~~ 50 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------------------------------PVFYSNLSACYV 50 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC--------------------------------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc--------------------------------HHHHHhHHHHHH
Confidence 345678999999999999999999999999999752 357999999999
Q ss_pred hcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|++++...|.+......+................+
T Consensus 51 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (514)
T 2gw1_A 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130 (514)
T ss_dssp HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-
T ss_pred HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 5569999999999999999999999999999999999976554433322221111111111111
Q ss_pred ccccCC--CCCCCCChhhHHHHHHHHHHHHHccCHHHHHHH--HHHHHHh--------CCCCHHHHHHHHHHHHH---hC
Q 008550 199 PNRSGR--APFDHLDSSRWLHRYVEAQCCIASNDYKGGLEL--FAELLQR--------FPNNIHILLEMAKVDAI---IG 263 (561)
Q Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~--~~~~~~~--------~~~~~~~~~~la~~~~~---~~ 263 (561)
...... .+... .+... .+. ............. +...... .|+++.+++.+|.++.. .|
T Consensus 131 ~~~~~~~~~~~~~----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (514)
T 2gw1_A 131 GDIDTATATPTEL----STQPA--KER-KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE 203 (514)
T ss_dssp ---------------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT
T ss_pred HHHHHHHHhhhhc----cCChh--hHH-HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc
Confidence 000000 00000 00000 000 0000000000000 0000111 25568888999998887 89
Q ss_pred CHHHHHHHHHHHHh-----h--C-------CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 264 KNDEAILNFEKVRS-----I--D-------PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 264 ~~~~A~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
++++|+..|+++++ . + |.++.++..+|.++...|++++|+..+++++...|. +.++..+|.++..
T Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence 99999999999998 5 3 444678899999999999999999999999999999 9999999999999
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+ .++..+|.++...|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 679999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCChHHHHHHHHHH
Q 008550 408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVI---EGRNGDAVSLLERY 478 (561)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~~ 478 (561)
+++...|+++.++..+|.++... |++++|+..+++++...|+++. ++..+|.++.. .|++++|+..++++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999888755 89999999999 99999999999999
Q ss_pred HhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 479 LKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 479 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+...|++ .++..+|.++...|++++|...|+++++++|+++.++..+..+..
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999877 889999999999999999999999999999999999887766554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=329.99 Aligned_cols=445 Identities=14% Similarity=0.114 Sum_probs=351.9
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
...+..++.+|..++..|+|++|+..|++++..+|.++ .+++.+|.++.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------~~~~~la~~~~ 70 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-------------------------------VFYSNISACYI 70 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc-------------------------------HHHHHHHHHHH
Confidence 44678999999999999999999999999999987554 58999999999
Q ss_pred hcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
..|++++|+..++++ ...|.++.+++.+|.++...|++++|+..|+ ++...|+....+.... ...+....+....
T Consensus 71 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~ 146 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPM---LERNLNKQAMKVL 146 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CH---HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHH---HHHHHHHHHHHHH
Confidence 999999999999984 5569999999999999999999999999996 8888887665542211 0111111222222
Q ss_pred ccccCCCCCCC--CChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHhCCHHHH
Q 008550 199 PNRSGRAPFDH--LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKV--------DAIIGKNDEA 268 (561)
Q Consensus 199 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--------~~~~~~~~~A 268 (561)
.......+... ..+... ....+....+...+...+.+.....+........++.. ....|++++|
T Consensus 147 ~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 147 NENLSKDEGRGSQVLPSNT-----SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHCC-------CCCCCHH-----HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccchHh-----HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22222111100 001111 13334455566665555554444444433344444433 3344689999
Q ss_pred HHHHHHHHhhCCCChH-------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 269 ILNFEKVRSIDPYIMT-------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
+..|+++++.+|+++. ++..+|.++...|++++|+..+++++...|. +.++..+|.++.. |++++|+..++
T Consensus 222 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999865 4777888999999999999999999999999 9999999999999 99999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 419 (561)
+++...|.++.++..+|.++...|++++|+..+++++...|++ .++..+|.++...|++++|+..+++++...|+++.+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999999999987 679999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc----------CChHHHHHHHHHHHhhCC
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLG------AALALAELHVIE----------GRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~~ 483 (561)
+..+|.++... |++++|+..|+++++..|++.. .+..+|.++... |++++|+..++++++..|
T Consensus 381 ~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 381 PTFFAEILTDR-GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 99999999998 9999999999999998776543 356678899999 999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
++ .++..+|.++...|++++|+.+|+++++++|+++.....+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 87 89999999999999999999999999999999988765544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=303.40 Aligned_cols=365 Identities=16% Similarity=0.151 Sum_probs=303.9
Q ss_pred HHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC
Q 008550 128 IVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (561)
Q Consensus 128 ~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (561)
...+.. +...|.++..++.+|..+...|++++|+..|++++..+|.+..++..+
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------------------------- 66 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR------------------------- 66 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------
Confidence 333444 455688888899999999999999999999999999888887777666
Q ss_pred CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---
Q 008550 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM--- 283 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 283 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 67 ---------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 131 (450)
T 2y4t_A 67 ---------------ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEK 131 (450)
T ss_dssp ---------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ---------------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhH
Confidence 78888889999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHH------------HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 284 TYMDEY------------AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 284 ~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
.++..+ |.++...|++++|+..+++++...|.++.++..+|.++.. |++++|+..|++++..+|.++
T Consensus 132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 211 (450)
T 2y4t_A 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 666555 5668889999999999999999999999999999999988 999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHHHCCCCH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR-SYQGL------------VHSYLQFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
.++..+|.++...|++++|+..|++++...|++. .+..+ |.++...|++++|+..|++++...|+++
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999999999999988873 34333 8899999999999999999999999885
Q ss_pred H----HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHH
Q 008550 418 K----ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA 492 (561)
Q Consensus 418 ~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la 492 (561)
. .+..+|.++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++ .++..++
T Consensus 292 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKD-EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4 778889999988 999999999999999999999999999999999999999999999999999877 7778888
Q ss_pred HH------------HHHcC-----CHHHHHHHHHH-HHhcCCccH----------HHHHHHHHHHHhcc
Q 008550 493 QV------------FAATN-----MLQEALSHYEA-ALRINSQNE----------AAKKGLERLEKQMK 533 (561)
Q Consensus 493 ~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~----------~~~~~l~~l~~~~~ 533 (561)
.+ |..+| +.+++.+.|++ +++..|++. .....+...+..++
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 44 44555 56778889986 888888752 23445555555555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=305.67 Aligned_cols=447 Identities=13% Similarity=0.047 Sum_probs=350.7
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
+.++..+..++..|+|+.|+......+...+ ...+++.+|.+++..|++++|+..|+++++.+|.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---- 73 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE---------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS---- 73 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH----
Confidence 3567889999999999999999999998742 256899999999999999999999999999987544
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHH---hcCCh
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYR---NSRHN 157 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~---~~~~~ 157 (561)
.+++.+|.++...|++++|+..++++ ...|.+............ ..+..
T Consensus 74 ---------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (514)
T 2gw1_A 74 ---------------------------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126 (514)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999985 333433333222222222 22233
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHH--HHHcCCcccHhHHhhccccccCC-CCCCCCChhhHHHHHHHHHHHHH---ccCH
Q 008550 158 RGAVACYKECLRHCPFFIEAITAL--AELGATPKDIISLFAQTPNRSGR-APFDHLDSSRWLHRYVEAQCCIA---SNDY 231 (561)
Q Consensus 158 ~~A~~~~~~~l~~~p~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~---~~~~ 231 (561)
.+++..+..+... |......... ....................... .......+......+..|.+++. .|++
T Consensus 127 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 127 KEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp TTC----------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHh-hhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 3333333222111 1111000000 00000000000000000000000 00001112334445566887776 8999
Q ss_pred HHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 232 KGGLELFAELLQ-----R--F-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 232 ~~A~~~~~~~~~-----~--~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++|+..|+++++ . . |.++.++..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC
Confidence 999999999999 5 4 445788999999999999999999999999999999 999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++++|+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHhh---hcCChHHHHHHHHHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK------ALKLVGDVHAS---NASGREKAKKFYESALR 446 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~~~~~~~A~~~~~~a~~ 446 (561)
++..|.+ .++..+|.++...|++++|+..+++++...|+++. ++..+|.++.. . |++++|+..+++++.
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASK 443 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHH
Confidence 9999987 67999999999999999999999999999998855 99999999999 8 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHH
Q 008550 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKL 491 (561)
Q Consensus 447 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l 491 (561)
.+|+++.++..+|.++...|++++|+..++++++..|++ .++..+
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999999999999999999999987 454444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=309.65 Aligned_cols=432 Identities=13% Similarity=0.052 Sum_probs=341.6
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++..+..++..|+|+.|+.....++...+. ...+++.+|.+++..|++++|+..|+++++.+|.++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 93 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----- 93 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH-----
Confidence 4677889999999999999999999987432 346899999999999999999999999999987544
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.+++.+|.++...|++++|+..++.+...|.....+ ...+...+...+|+.
T Consensus 94 --------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~ 144 (537)
T 3fp2_A 94 --------------------------KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS---IEPMLERNLNKQAMK 144 (537)
T ss_dssp --------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHH
Confidence 579999999999999999999998665555444333 224445566788999
Q ss_pred HHHHHHhcCCCcH--------HHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH-----HHHHHHHHcc
Q 008550 163 CYKECLRHCPFFI--------EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY-----VEAQCCIASN 229 (561)
Q Consensus 163 ~~~~~l~~~p~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~a~~~~~~~ 229 (561)
.+++++...|... .....+ ...+....+..........+ .....+.... ..+......|
T Consensus 145 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 145 VLNENLSKDEGRGSQVLPSNTSLASFF-----GIFDSHLEVSSVNTSSNYDT---AYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHCC-------CCCCCHHHHHHHH-----HTSCHHHHHHTSCCCCSSCS---SHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHhCccccccccchHhHHHHHH-----HhcChHHHHHHHhhcccccc---HHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 9999988765332 111111 11122222222211111100 0000000000 0133334457
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 230 DYKGGLELFAELLQRFPNNIH-------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|. +.++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 899999999999999999865 5777889999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
+..+++++...|+++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHhhhc---------CChHHHHHHHHHHH
Q 008550 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA------LKLVGDVHASNA---------SGREKAKKFYESAL 445 (561)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~~---------~~~~~A~~~~~~a~ 445 (561)
++ .++..+|.++...|++++|+..+++++...|++... +..+|.++.... |++++|+..|++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 87 679999999999999999999999999988765433 455566666521 88999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+.+|+++.++..+|.++...|++++|+..|+++++..|+.
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999976
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=295.60 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=293.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHH------------HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 302 LSKLVHDLLSIDPSRP---EVFVAL------------SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
|+..|++++...|.++ .++..+ |.++.. |++++|+..+++++...|.++.++..+|.++...|+
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 9999999999999988 776665 555888 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHhhhcC
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV------------GDVHASNAS 432 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------~~~~~~~~~ 432 (561)
+++|+..|+++++..|.+ .++..+|.++...|++++|+..+++++...|++...+..+ |.++... |
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 271 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-G 271 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 999999999999999887 6799999999999999999999999999999999988776 9999998 9
Q ss_pred ChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLG----AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 507 (561)
++++|+.+|+++++..|+++. ++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999854 78889999999999999999999999999976 8999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Q 008550 508 YEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 508 ~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
|+++++++|+++.++..++.+...
T Consensus 352 ~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 352 YETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchHHHHHHHHHHHHH
Confidence 999999999999999999976554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=283.27 Aligned_cols=315 Identities=17% Similarity=0.228 Sum_probs=297.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 45559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDP---SRPEVFVAL------------SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
++++|+..++++++..| +++.++..+ |.++.. |++++|+..+++++...|.++.++..+|.++.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999 888888777 677888 99999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH------------HHHHHh
Q 008550 362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL------------VGDVHA 428 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~------------l~~~~~ 428 (561)
..|++++|+..+++++...|.+ .++..+|.++...|++++|+..++++++..|+++.++.. +|.++.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 679999999999999999999999999999999887653 377889
Q ss_pred hhcCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHH
Q 008550 429 SNASGREKAKKFYESALRLEPGYLG----AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~ 503 (561)
.. |++++|+..++++++..|+++. ++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++
T Consensus 246 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 246 RD-GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred Hc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 88 9999999999999999999874 46679999999999999999999999999976 899999999999999999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
|..+|+++++++|+++.++..+..+...++
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999987664
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=279.95 Aligned_cols=319 Identities=16% Similarity=0.143 Sum_probs=258.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
+++.++.+|..+...|++++|+..|+++++.+|.+..++..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------------------- 43 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------------------- 43 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH--------------------------------------
Confidence 356677788888888888888888888888888777666555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CChHHHHHH-------
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP---YIMTYMDEY------- 289 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l------- 289 (561)
|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+| .++.++..+
T Consensus 44 --a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 44 --ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp --HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH
Confidence 77777778888888888888888888888888888888888888888888888888888 776666665
Q ss_pred -----HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 290 -----AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 290 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
|.++...|++++|+..++++++..|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 6788888888888888888888888888888888888888 8888888888888888888888888888888888
Q ss_pred CChhHHHHHHHHhHHhCCChH-HH------------HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHH
Q 008550 364 KRPEAAVIAFRGAQELRPDLR-SY------------QGLVHSYLQFSKVKEALYAAREAMKAMPQSAK----ALKLVGDV 426 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~-~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~ 426 (561)
|++++|+..++++++..|+.. ++ ..+|.++...|++++|+..+++++...|+++. ++..+|.+
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 888888888888888887762 22 24477888889999999999999988888774 35568888
Q ss_pred HhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcC
Q 008550 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN 499 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g 499 (561)
+... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++ .++..++.+....+
T Consensus 282 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 282 FSKD-EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8887 899999999999999889888889999999999999999999999999888876 67777777766544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=289.07 Aligned_cols=383 Identities=15% Similarity=0.064 Sum_probs=287.8
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHH
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 118 (561)
.+..+..+..+|.+++.+|+|++|+..|++++++.+...
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~----------------------------------------- 85 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH----------------------------------------- 85 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-----------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-----------------------------------------
Confidence 344556777888888888888888888888887642111
Q ss_pred HhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--------cHHHHHHHHHHcCCccc
Q 008550 119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPF--------FIEAITALAELGATPKD 190 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~ 190 (561)
.....|....++..+|.+|..+|++++|+..|++++...|. ...++.
T Consensus 86 --------------~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~----------- 140 (472)
T 4g1t_A 86 --------------ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC----------- 140 (472)
T ss_dssp --------------GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH-----------
T ss_pred --------------ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH-----------
Confidence 00123455567778888888888999998888888875432 122221
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hCCH
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI--ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI---IGKN 265 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~ 265 (561)
..|.++. ..++|++|+.+|+++++.+|+++.++..++.++.. .++.
T Consensus 141 -----------------------------~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 141 -----------------------------EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp -----------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC
T ss_pred -----------------------------HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH
Confidence 1244443 45679999999999999999999999999988654 5777
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
++|+..++++++++|.++.++..+|..+.. .+++++|..++++++...|..+.++..+|.++.. |++++|+..++
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 899999999999999999999888876654 4678899999999999999999999999999999 99999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhc-------------------CChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSM-------------------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
++++..|+++.++..+|.+|... +.+++|+..++++++.+|.. .++..+|.++...|+++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 99999999999999999988643 34678999999999999998 56999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHH---HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 401 EALYAAREAMKAMPQSAK---ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+|+..|++++...|++.. ++..+|.+.....|++++|+..|++++++.|++...... ...+...+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~ 421 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHH
Confidence 999999999999887644 456667655433499999999999999999998654322 2445677888
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
++..+|++ .++..+|.+|...|++++|+++|++++++.|.+|.+...++
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 89999987 89999999999999999999999999999999999877664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=264.10 Aligned_cols=295 Identities=16% Similarity=0.142 Sum_probs=269.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH
Q 008550 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
....+...|+++.++..+|..+...|++++|+..|+++++.+|.+...+..++.++...|++++|+..++++++..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 33555667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-c-CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH
Q 008550 318 EVFVALSVLWER-K-DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (561)
Q Consensus 318 ~~~~~l~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (561)
.++..+|.++.. | ++++|+.++++++..+|.++.++..+|.++...|++++|+..++++++..|+. .++..+|.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999 8 99999999999999999999999999999999999999999999999999986 67888999999
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHc
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE---------PGYLGAALALAELHVIE 465 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---------p~~~~~~~~la~~~~~~ 465 (561)
..|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++.. |..+.++..+|.++...
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN-GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998 99999999999999976 66678999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hcc
Q 008550 466 GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK-QMK 533 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~-~~~ 533 (561)
|++++|+..++++++..|++ .++..+|.++...|++++|..+|+++++++|+++.++..++.+.. ..+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 99999999999999999887 899999999999999999999999999999999999999999874 443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=261.54 Aligned_cols=294 Identities=15% Similarity=0.122 Sum_probs=249.6
Q ss_pred CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChh
Q 008550 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS 213 (561)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (561)
+...+.++..++.+|..+...|++++|+..|+++++.+|.+..++..+
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------------- 62 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH-------------------------------- 62 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH--------------------------------
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH--------------------------------
Confidence 334467778888999999999999999999999999998877666544
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
+.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+..|+++++.+|.++.++..+|.+
T Consensus 63 --------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 63 --------IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp --------HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred --------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 677788899999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
+...|++++|+..+++++...|.+..++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999888888889998888 999999999999999999988889999999999999999999
Q ss_pred HHHHhHHhC---------CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 372 AFRGAQELR---------PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 372 ~~~~~~~~~---------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
.+++++... |.. .++..+|.++...|++++|+..++++++..|+++.++..+|.++... |++++|+.+|
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM-GNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 999888875 332 56788888888888888888888888888888888888888888887 8888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-HHcCCh
Q 008550 442 ESALRLEPGYLGAALALAELH-VIEGRN 468 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~-~~~g~~ 468 (561)
+++++.+|+++.++..++.++ ...|+.
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888888888888888888877 444544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=273.75 Aligned_cols=401 Identities=13% Similarity=-0.041 Sum_probs=251.8
Q ss_pred HHHHHHhhhhhhhHHhHHHHHHHhccCCCC-CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchh
Q 008550 7 QITALIDQGLYDSAQMLGCFLVSSSAINGE-TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (561)
Q Consensus 7 ~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (561)
.+..+...|+|++|+......+.+...... ...+..+.++..+|.+|+..|+|++|+..|++++.+.|..+...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~----- 131 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY----- 131 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-----
Confidence 345567788999999888877765332211 12334456788899999999999999999999998875443210
Q ss_pred hhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc--CCHHHHHHHHhc-CCCcccchhHHHHHHHHHHh---cCChhh
Q 008550 86 SSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL--GETKAAIVEMEG-IPSKARNLQMSLLMAKLYRN---SRHNRG 159 (561)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~---~~~~~~ 159 (561)
......++..+|.++... +++++|+..|++ +...|.++.++..+|.++.. .++.++
T Consensus 132 ------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 132 ------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred ------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 112234555555555443 346666666666 33446666666666655433 345566
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008550 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (561)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (561)
|+..|+++++.+|.+..++..++... +.+....|++++|+.+++
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~a~~~~~ 237 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKL------------------------------------HKMREEGEEEGEGEKLVE 237 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHH------------------------------------HHCC------CHHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHH------------------------------------HHHHhhhhHHHHHHHHHH
Confidence 66666666666666665554442111 333444556666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
+++..+|.++.++..+|.+|...|++++|+..++++++.+|+++.++..+|.++...+....+..
T Consensus 238 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~--------------- 302 (472)
T 4g1t_A 238 EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR--------------- 302 (472)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH---------------
Confidence 66666666666666666666666666666666666666666666666666666543321111100
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH----HHHHHHHH-H
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQGLVHS-Y 393 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~-~ 393 (561)
....+..... +.++.|+..+++++..+|.+..++..+|.++...|++++|+..|+++++..|++. .+..+|.+ +
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 0111111222 5678899999999999999999999999999999999999999999999988762 35566654 4
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
...|++++|+..|++++++.|++.... +....+...+++++..+|+++.++..+|.++...|++++|++
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~-----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKE-----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHH-----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999999999999875432 334556677888999999999999999999999999999999
Q ss_pred HHHHHHhhCCCh-HHHHHHH
Q 008550 474 LLERYLKDWADD-SLHVKLA 492 (561)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~la 492 (561)
+|+++++..|.. .+...+|
T Consensus 452 ~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --------------------
T ss_pred HHHHHHhcCCCCCcHhhcCC
Confidence 999999988755 4454444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=263.66 Aligned_cols=289 Identities=18% Similarity=0.112 Sum_probs=229.5
Q ss_pred HHHHccCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 224 CCIASNDYKGGLE-LFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 224 ~~~~~~~~~~A~~-~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4445577777777 7777777766653 4577778888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH----------------HHHHHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----------------MKGNLLL 361 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----------------~l~~~~~ 361 (561)
+++|+..++++++..|.++.++..+|.++.. |++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 8888888888888888888888888887777 8888888888888887777766554 456665
Q ss_pred hcCChhHHHHHHHHhHHhCCC--h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
..|++++|+..++++++..|. . .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 888899999999999988888 4 56888899999999999999999999999999999999999999888 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------------HHHHHHHHHHHHcCCHHHHHH
Q 008550 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------------SLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 439 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~ 506 (561)
..|+++++.+|+++.++..+|.++...|++++|+..++++++..|+. .+|..+|.++..+|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999999999888899999999999999999999999998877643 688899999999999999998
Q ss_pred HHHHHHhc
Q 008550 507 HYEAALRI 514 (561)
Q Consensus 507 ~~~~al~~ 514 (561)
+++++++.
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 88877654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-29 Score=248.41 Aligned_cols=390 Identities=14% Similarity=0.106 Sum_probs=312.5
Q ss_pred hHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHH
Q 008550 42 KAENLIILGDSLFR----DREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (561)
Q Consensus 42 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 117 (561)
.+.+++.+|..|+. .+++++|+.+|+++.+. .+..+.+.+|.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---------------------------------~~~~a~~~Lg~~ 84 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---------------------------------GYTPAEYVLGLR 84 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHH
Confidence 45688889998888 88999999999998875 234578889999
Q ss_pred HHh----cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcc
Q 008550 118 HFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEAITALAELGATPK 189 (561)
Q Consensus 118 ~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 189 (561)
|.. .+++++|+.++++... ..++.+++.+|.+|.. .+++++|+..|+++... +++.++..+
T Consensus 85 y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------- 153 (490)
T 2xm6_A 85 YMNGEGVPQDYAQAVIWYKKAAL-KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM-------- 153 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH--------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH--------
Confidence 988 8899999998888532 3467888889999888 78899999999998765 456666665
Q ss_pred cHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 008550 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI---- 261 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---- 261 (561)
|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 154 --------------------------------g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 154 --------------------------------GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp --------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred --------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCC
Confidence 555555 67899999999998875 578889999999988
Q ss_pred hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-----cCH
Q 008550 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDE 332 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~ 332 (561)
.+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++.. +++
T Consensus 200 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCH
Confidence 88999999999998875 467888889988886 78899999999988875 567888888888764 688
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhc-----CChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC---CHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSM-----KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS---KVKEALY 404 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 404 (561)
++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+.. ...+++.+|.+|...| ++++|+.
T Consensus 276 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 276 LKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 8999999998765 5678888899998887 89999999999988763 3367888888888766 7889999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLE 476 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~ 476 (561)
+|+++++. .++.+++.+|.++.. . +++++|+.+|+++.+.. ++.++..+|.+|.. .+++++|+.+|+
T Consensus 353 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 353 WFRKAAAK--GEKAAQFNLGNALLQGKGVK-KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998876 578899999999887 6 88899999999988753 68888899999988 889999999999
Q ss_pred HHHhhCCC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 477 RYLKDWAD---D-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 477 ~~~~~~~~---~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
++++..|+ + .+...+|.++.. +...|.+..++.++..|++..+..
T Consensus 428 ~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~ 476 (490)
T 2xm6_A 428 TASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWARM 476 (490)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988853 3 677777776654 345556566666666676665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=257.50 Aligned_cols=306 Identities=14% Similarity=0.029 Sum_probs=214.0
Q ss_pred HHHhcCCHHHHHH-HHhcC-CCcccc----hhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc
Q 008550 117 CHFALGETKAAIV-EMEGI-PSKARN----LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD 190 (561)
Q Consensus 117 ~~~~~~~~~~A~~-~l~~~-~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 190 (561)
++...|++++|+. .+++. ...|.+ ...++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------- 104 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL--------- 104 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH---------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence 5555566666665 55542 222222 34455666666666666666666666666666555555444
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL 270 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 270 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 105 -------------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 105 -------------------------------GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp -------------------------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------------HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCC--
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER-- 348 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-- 348 (561)
.+++++...|.+...+..++.... .......+..++.++..|++++|+..+++++...|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 154 ILRDWLRYTPAYAHLVTPAEEGAG------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHHHHTSTTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHhh------------------hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 666666666655544433221100 000111222566666339999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
++.++..+|.++...|++++|+..+++++...|++ .++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999987 67999999999999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 428 ASNASGREKAKKFYESALRLEPGY-----------LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
... |++++|+..|+++++..|++ ..++..+|.++...|++++|..++.++++.
T Consensus 296 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 296 INL-GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHH-TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHC-CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 998 99999999999999998887 889999999999999999999998876654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-29 Score=247.60 Aligned_cols=366 Identities=13% Similarity=0.058 Sum_probs=323.8
Q ss_pred ChHHHHHHHHHHHHh----cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCcHHH
Q 008550 106 NENEVKYKIASCHFA----LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRN----SRHNRGAVACYKECLRHCPFFIEA 177 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~ 177 (561)
.+.++.+.+|.+|.. .+++++|+..+++.... .++.+++.+|.+|.. .+++++|+.+|+++... +++.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 445789999999999 89999999999985432 678899999999999 99999999999999875 46666
Q ss_pred HHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 008550 178 ITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA----SNDYKGGLELFAELLQRFPNNIHILL 253 (561)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 253 (561)
+..| |.++.. .+++++|+.+|+++.+. +++.+++
T Consensus 114 ~~~L----------------------------------------g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 151 (490)
T 2xm6_A 114 QQNL----------------------------------------GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ 151 (490)
T ss_dssp HHHH----------------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHH----------------------------------------HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 6665 666766 78999999999999775 5799999
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 254 EMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 254 ~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 227 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLAD 227 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 99999998 88999999999999886 578999999999998 89999999999999875 57889999999
Q ss_pred HHHh-----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhc
Q 008550 326 LWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQF 396 (561)
Q Consensus 326 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (561)
++.. +++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++.+.. ...+++.+|.+|...
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcC
Confidence 9973 7999999999999875 568899999999998 899999999999998652 346789999999988
Q ss_pred -----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 008550 397 -----SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS---GREKAKKFYESALRLEPGYLGAALALAELHVI---- 464 (561)
Q Consensus 397 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 464 (561)
+++++|+.+|+++.+. .++.+++.+|.++... | ++++|+.+|+++++. .++.+++.+|.++..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRL-GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred CCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999886 5689999999999985 5 789999999999987 578999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRIN---SQNEAAKKGLERLE 529 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~l~ 529 (561)
.+++++|+.+|+++.+.. +..++..+|.+|.. .+++++|..+|+++++.+ |+++.+...++.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 899999999999999864 45899999999999 899999999999999999 45888887776653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-31 Score=250.86 Aligned_cols=263 Identities=16% Similarity=0.090 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 44888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHH----------HHHHHhcCChhHHHHHHHHhHHhCCC--h-HHHHHHHHHHHh
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMK----------GNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYLQ 395 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~ 395 (561)
|++++|+..+++++...|.+...+..+ |.++...|++++|+..|++++...|. + .++..+|.++..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 888888888888888888766665544 88999999999999999999999887 4 568899999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008550 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (561)
.|++++|+..++++++..|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 226 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 476 ERYLKDWAD-------------DSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 476 ~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+++++..|+ ..+|..++.++...|+.+.|.....+.+.
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999988765 37889999999999999988887766443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-28 Score=246.50 Aligned_cols=413 Identities=9% Similarity=0.016 Sum_probs=320.6
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL 121 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 121 (561)
...+|..++.. .+.|++++|...|+++++.+|.++ .++..++..+.+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~-------------------------------~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSG-------------------------------RFWKLYIEAEIKA 59 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCH-------------------------------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCH-------------------------------HHHHHHHHHHHhc
Confidence 45578888874 778999999999999999887544 5788899999999
Q ss_pred CCHHHHHHHHhcC-CCcccchhHHHHHHHH-HHhcCChhhHHH----HHHHHHhc---CCCcHHHHHHHHHHcCCcccHh
Q 008550 122 GETKAAIVEMEGI-PSKARNLQMSLLMAKL-YRNSRHNRGAVA----CYKECLRH---CPFFIEAITALAELGATPKDII 192 (561)
Q Consensus 122 ~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~-~~~~~~~~~A~~----~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~ 192 (561)
|++++|..+|++. ...| +...|..++.. ....|++++|.. .|++++.. +|.+...|..++.+.......
T Consensus 60 ~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~- 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV- 137 (530)
T ss_dssp TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC-
T ss_pred CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc-
Confidence 9999999999984 4446 67788877754 445688887766 77777654 455666666554332110000
Q ss_pred HHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-----------
Q 008550 193 SLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI--HILLEMAKVD----------- 259 (561)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~----------- 259 (561)
. .+...|+++.|+.+|+++++ .|.+. ..|...+...
T Consensus 138 --------------------~----------~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 138 --------------------G----------SYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp --------------------S----------STTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred --------------------c----------cHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 0 01135889999999999998 56543 3333332221
Q ss_pred --HHhCCHHHHHHHHHH------HHhh-----CCCC-------hHHHHHHHHHHHhc----CCH----hHHHHHHHHHHh
Q 008550 260 --AIIGKNDEAILNFEK------VRSI-----DPYI-------MTYMDEYAMLLKVK----CDY----SKLSKLVHDLLS 311 (561)
Q Consensus 260 --~~~~~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~ 311 (561)
...+++..|...+.. .++. .|.. ...|..+....... ++. ..++..|++++.
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 124567778776665 3332 2322 23444443332221 222 478899999999
Q ss_pred cCCCCHHHHHHHHHHHH--------hcCHh-------HHHHHHHHHHh-ccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 312 IDPSRPEVFVALSVLWE--------RKDER-------GALSYAEKSIR-IDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~--------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
..|.++.+|..+|.++. .|+++ +|+..|+++++ ..|++..+|..+|.++...|++++|...|++
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999887 37876 99999999997 8999999999999999999999999999999
Q ss_pred hHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-hhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 376 AQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH-ASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 376 ~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+++..|.+ .+|..++.++.+.|++++|...|+++++..|.....+...+.+. ... |++++|..+|+++++..|+++
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~-~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTCH
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHCCCCH
Confidence 99999986 36999999999999999999999999999888877777766653 345 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADD-----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
.+|..++.++...|+.++|..+|++++...|.+ .+|...+......|+.+.+..++.++++..|++..
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 999999999999999999999999999986532 48888899999999999999999999999996543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=243.48 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=239.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHh-cCHhHHHHHHHHHHhccCC--ChhHHHHHHHHHHhcCC
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVAL----------SVLWER-KDERGALSYAEKSIRIDER--HIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l----------~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 365 (561)
+++|+..++++++..|+++.++..+ |.++.. |++++|+.++++++...|. ++.++..+|.++...|+
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999877666555 888888 9999999999999999999 89999999999999999
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
+++|+..|+++++..|++ .++..+|.++...|++++|+..|+++++..|+++.++..+|.++... |++++|+.+|+++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 307 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-GAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 999999999999999987 67999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 445 LRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 445 ~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+++.|+ +..++..++.++...|+.+.+.....+.+.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999877 367899999999999999999888776443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-28 Score=240.81 Aligned_cols=383 Identities=10% Similarity=0.018 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcC
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA 186 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 186 (561)
..++..++.. ...|++++|...++++ ...|.+..+|..++..+...|++++|+..|++++...| +...|..++.
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~--- 87 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS--- 87 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH---
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH---
Confidence 4578888874 7899999999999995 55699999999999999999999999999999999999 5667766532
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHH
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLE----LFAELLQR---FPNNIHILLEMAKVD 259 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~la~~~ 259 (561)
......|++++|.+ .|++++.. +|.+..+|...+...
T Consensus 88 ------------------------------------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~ 131 (530)
T 2ooe_A 88 ------------------------------------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFL 131 (530)
T ss_dssp ------------------------------------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 12223466666554 77777764 567788998888877
Q ss_pred HH---------hCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHH-------------HhcCCHhHHHHHHHH------H
Q 008550 260 AI---------IGKNDEAILNFEKVRSIDPYIM--TYMDEYAMLL-------------KVKCDYSKLSKLVHD------L 309 (561)
Q Consensus 260 ~~---------~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~-------------~~~~~~~~A~~~~~~------~ 309 (561)
.. .|+++.|..+|+++++ .|... ..|..+.... ...+++..|...+.. .
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 132 KGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 65 7899999999999999 56553 3333333221 134567778777665 4
Q ss_pred Hhc-----CCCC-------HHHHHHHHHHHHh-----cCH----hHHHHHHHHHHhccCCChhHHHHHHHHHHh------
Q 008550 310 LSI-----DPSR-------PEVFVALSVLWER-----KDE----RGALSYAEKSIRIDERHIPGYIMKGNLLLS------ 362 (561)
Q Consensus 310 ~~~-----~~~~-------~~~~~~l~~~~~~-----~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 362 (561)
++. .|.. ...|......... ++. ..++..|++++...|.++.+|+.+|..+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 432 3332 2344444332221 122 478899999999999999999999999986
Q ss_pred -cCChh-------HHHHHHHHhHH-hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhhc
Q 008550 363 -MKRPE-------AAVIAFRGAQE-LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-KALKLVGDVHASNA 431 (561)
Q Consensus 363 -~~~~~-------~A~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~ 431 (561)
.|+++ +|+..|+++++ ..|++ ..|..++.++...|++++|...|+++++..|.++ .+|..++.++...
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~- 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA- 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-
Confidence 79987 99999999997 78887 6799999999999999999999999999999986 6999999999888
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYE 509 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~ 509 (561)
|++++|+..|+++++..|.....+...+.+ +...|++++|..+|+++++..|++ .+|..++.++...|++++|...|+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999999999998887777777766 346899999999999999999976 899999999999999999999999
Q ss_pred HHHhcCCccHH----HHHHHHHHHHhcc
Q 008550 510 AALRINSQNEA----AKKGLERLEKQMK 533 (561)
Q Consensus 510 ~al~~~p~~~~----~~~~l~~l~~~~~ 533 (561)
+++...|.++. +|.....+....|
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 99998766554 8877777777665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=237.44 Aligned_cols=279 Identities=14% Similarity=0.091 Sum_probs=180.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 34558888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHH-HH-HHHhcCChhHHHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMK-GN-LLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~~~~~~ 375 (561)
++++|+..+++++...|.+...+..+.... |.... ...+ +. ++...|++++|+..+++
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQAD-------------------VDIDD-LNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC----------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHH-------------------HHHHH-HHHHHHhHHHHHcccHHHHHHHHHH
Confidence 888888888888888888776665551110 00000 0011 22 34445555555555555
Q ss_pred hHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 376 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
+++..|.+ .++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..++++++..|+++.+
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~ 242 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALDAYNRALDINPGYVRV 242 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHH
Confidence 55555544 34555555555555555555555555555565666666666666655 66666666666666666666666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC------------h-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWAD------------D-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+..+|.++...|++++|+..+++++...|. . .++..+|.++...|++++|...++++++..|+
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 666666666666666666666666665555 3 55666666666666666666666665555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=236.91 Aligned_cols=282 Identities=12% Similarity=0.011 Sum_probs=228.4
Q ss_pred cHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 008550 174 FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILL 253 (561)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 253 (561)
....+..++..+...++..++...+.+.....|. .....+..|.++...|++++|+..++++++.+|+++.++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence 3456789999999999999999999888876543 3334456699999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH-HH-HHHh-c
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SV-LWER-K 330 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-~~-~~~~-~ 330 (561)
.+|.++...|++++|+..++++++..|.+...+..+.... |.... ...+ +. ++.. |
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------VDIDD-LNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------HHHHH-HHHHHHhHHHHHcc
Confidence 9999999999999999999999999999887766552111 11111 1233 33 3555 8
Q ss_pred CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008550 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA 409 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 409 (561)
++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..++++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888876 56888888888888999999999988
Q ss_pred HHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++..|+++.++..+|.++... |++++|+..+++++...|. ++.++..+|.++...|++++|...+++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888888888899999998888 9999999999999988888 678888899999999999999988887
Q ss_pred HHhhCC
Q 008550 478 YLKDWA 483 (561)
Q Consensus 478 ~~~~~~ 483 (561)
+++..|
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 776554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=240.58 Aligned_cols=259 Identities=12% Similarity=0.045 Sum_probs=151.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC-HhHHHHHHHHHHhcCCCCHHHH
Q 008550 242 LQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-YSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+..+|+++.++..+|.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|++++.++|+++.+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 445566666677777777777777777777777777777666666666666666664 6666666666666666666666
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHh-cC
Q 008550 321 VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FS 397 (561)
Q Consensus 321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~ 397 (561)
+.+|.++.. |++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|++ .+|+.+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 666666666 666666666666666666666666666666555555555555555555555554 345555555555 33
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG--RNGDAVSLL 475 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~ 475 (561)
..++|+ .+.++.+|++++.++|++..+|..++.++...| ++++|++.+
T Consensus 250 ~~~eA~------------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 250 YNDRAV------------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp SCSHHH------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred cchHHH------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 324441 000024444555555555445555554444444 344555544
Q ss_pred HHHHhhCCCh-HHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCCccHHHHHHHHHHHHh
Q 008550 476 ERYLKDWADD-SLHVKLAQVFAATN--------M-LQEALSHYEAA-LRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 476 ~~~~~~~~~~-~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~l~~~ 531 (561)
.++ +..|++ .++..+|.+|..+| + +++|+++|+++ ++++|.....|..++.....
T Consensus 300 ~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 300 LDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 444 444433 44455555555542 2 46777777777 77777777777777765543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=238.91 Aligned_cols=253 Identities=11% Similarity=-0.014 Sum_probs=206.2
Q ss_pred CChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChHHHHH
Q 008550 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK-NDEAILNFEKVRSIDPYIMTYMDE 288 (561)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 288 (561)
.++.....++..|.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|++++.++|++..+|..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3455566677789999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh-cCCh
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MKRP 366 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 366 (561)
+|.++...|++++|+..|++++.++|++..+|+.+|.++.. |++++|+.+|+++++++|.+..+|..+|.++.. .|.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999999 5655
Q ss_pred hHHH-----HHHHHhHHhCCCh-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC------
Q 008550 367 EAAV-----IAFRGAQELRPDL-RSYQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS------ 432 (561)
Q Consensus 367 ~~A~-----~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------ 432 (561)
++|+ ..|++++.++|++ .+|+.++.++...| ++++|+..+.++ +..|+++.++..+|.++... |
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~-~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM-LENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH-HHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH-hcccccc
Confidence 8874 6666666666665 34666666666655 456666666555 55666666666666666554 3
Q ss_pred ---ChHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Q 008550 433 ---GREKAKKFYESA-LRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 433 ---~~~~A~~~~~~a-~~~~p~~~~~~~~la~~~~~ 464 (561)
.+++|+.+|+++ ++++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 135566666666 56666665566555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=218.98 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh----hHHHHHHH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI----PGYIMKGN 358 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~ 358 (561)
+.++.+|.++...|++++|+..++++++.+|.++.++..+|.++.. |++++|+..+++++. .|.++ .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555 555555555555555 22222 23666677
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHhhhcCChHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG-DVHASNASGREK 436 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~ 436 (561)
++...|++++|+..|+++++.+|.. .++..+|.++...|++++|+..+++++..+|.++.++..+| .++. . +++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~-~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-N-KEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-T-TCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-H-HHHHH
Confidence 7777777777777777777776665 45777777777777777777777777777777777787888 4444 3 67888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CCh------HHHHHHHHHHHHcCCHHHH
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIEGR---NGDAVSLLERYLKDW---ADD------SLHVKLAQVFAATNMLQEA 504 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~---~~~------~~~~~la~~~~~~g~~~~A 504 (561)
|+..|+++++.+|+++.++..+|.++...|+ +++|+..++++++.. |+. .++..+|.++...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888888888888888877 777888888887765 431 5788999999999999999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 505 LSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 505 ~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+.+|+++++++|+++.++..+..+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999999999999988876554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=214.22 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=233.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
....+..|+|..|+..++++...+|++ .+....++++|...|+++.|+..++. .+|....++..++..+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 677788999999999999887777776 46778889999999999999988865 35666778888999999999999
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 301 KLSKLVHDLLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 301 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
+|++.+++++.. +|+++.+++.+|.++.. |++++|+..+++ |.++.++..+|.++...|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998875 69999999999999999 999999999988 8889999999999999999999999999999
Q ss_pred HhCCChH-HHHH--HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 378 ELRPDLR-SYQG--LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 378 ~~~~~~~-~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
+.+|+.. .... +..++...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.+
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHH
Confidence 9998863 2222 224445668999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 008550 455 ALALAELHVIEGRNGD-AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
+.++|.++...|++.+ +..+++++++..|++.... .+..+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHc
Confidence 9999999999999976 5688899999999873322 3455555666665554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=215.90 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=194.1
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
+++.++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------------------- 43 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR-------------------------------------- 43 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH--------------------------------------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------------
Confidence 346677888888888888888888888888888877666555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (561)
|.++...|++++|+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..
T Consensus 44 --~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 44 --AVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred --HHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 7778888888888888888887 3333 44578888888888888888888888888888888888888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHHHHHHHH-HHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC---hhHHHH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR---PEAAVI 371 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 371 (561)
.|++++|+..++++++..|.++.++..+| .++..+++++|+..++++++..|.++.++..+|.++...|+ +++|+.
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 88888888888888888888888888888 66666888888888888888888888888888888888888 788888
Q ss_pred HHHHhHHhC---CCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 372 AFRGAQELR---PDL------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 372 ~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
.++++++.. |+. .++..+|.++...|++++|+.+++++++.+|+++.++..++.+...
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 888887764 431 3466777777777777777777777777777777777666665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=230.46 Aligned_cols=376 Identities=14% Similarity=0.061 Sum_probs=271.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH--
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET-- 124 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 124 (561)
..+|..+++.|++++|+..|+++.+.. ++ ++++.+|.++...|++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~-------------------------------~A~~~Lg~~y~~~g~~~d 53 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YS-------------------------------EAQVGLADIQVGTRDPAQ 53 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CC-------------------------------TGGGTCC-----------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CH-------------------------------HHHHHHHHHHHccCCCCC
Confidence 568999999999999999999997763 22 3456677888888888
Q ss_pred -HHHHHHHhcCCCcccchhHHHHHHHHHHhcC-----ChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 125 -KAAIVEMEGIPSKARNLQMSLLMAKLYRNSR-----HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 125 -~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
++|+..+++.... ++.+++.+|.++...+ ++++|+..|+++++..+ +.++..|
T Consensus 54 ~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~L----------------- 112 (452)
T 3e4b_A 54 IKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPL----------------- 112 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHH-----------------
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH-----------------
Confidence 9999999986544 7889999999776665 78999999999998544 3466666
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH----
Q 008550 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK---GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN---- 271 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~---- 271 (561)
|.++...+... ++...+.++.. +.++.+++.+|.+|...+.++++...
T Consensus 113 -----------------------g~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 113 -----------------------AMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp -----------------------HHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred -----------------------HHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 44444444333 34444444433 34577899999999999965555444
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhcC---CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----CHhHHHHHHHHHH
Q 008550 272 FEKVRSIDPYIMTYMDEYAMLLKVKC---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK-----DERGALSYAEKSI 343 (561)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~A~~~~~~~~ 343 (561)
++.+... ++.+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+|..| ++++|+.+|+++.
T Consensus 168 ~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 168 CKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 4444433 4459999999999999 999999999999999999999889999999764 8899999999998
Q ss_pred hccCCChhHHHHHHHH-H--HhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHCCC
Q 008550 344 RIDERHIPGYIMKGNL-L--LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS-----KVKEALYAAREAMKAMPQ 415 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~p~ 415 (561)
|.++.+++.+|.+ + ...+++++|+.+|+++.+.. ...+++.+|.+|. .| ++++|+.+|+++. |.
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 8899999999998 4 57899999999999998654 4477899999998 55 9999999999998 88
Q ss_pred CHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCChHHH
Q 008550 416 SAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 488 (561)
++.+++.+|.+|..- ..++++|+.+|+++.+ +.++.+.+.+|.+|.. ..++.+|..+|+++.+..+. ...
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~ 393 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EAN 393 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHH
Confidence 999999999998861 1489999999999987 4568899999999985 45899999999999886543 333
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcC
Q 008550 489 VKLAQVFAAT--NMLQEALSHYEAALRIN 515 (561)
Q Consensus 489 ~~la~~~~~~--g~~~~A~~~~~~al~~~ 515 (561)
..++.+...+ ++..+|....++..+..
T Consensus 394 ~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 394 DLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4444443322 34555666665554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=210.52 Aligned_cols=276 Identities=9% Similarity=0.004 Sum_probs=216.9
Q ss_pred HHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHH
Q 008550 50 GDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIV 129 (561)
Q Consensus 50 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 129 (561)
.+..|..|+|..|+..+++....+|.+ ..+..+.++++|+..|+++.|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~------------------------------~~e~~~~l~r~yi~~g~~~~al~ 55 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPER------------------------------DVERDVFLYRAYLAQRKYGVVLD 55 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchh------------------------------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 345678899999999988766654321 13466778899999999999998
Q ss_pred HHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 130 EMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH--CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 130 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
.++.. .|....++..++..+...|++++|+..+++++.. +|+++.++..+
T Consensus 56 ~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l-------------------------- 107 (291)
T 3mkr_A 56 EIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA-------------------------- 107 (291)
T ss_dssp HSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH--------------------------
T ss_pred Hhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH--------------------------
Confidence 88763 4556777888899999999999999999998875 58888777666
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHH
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 287 (561)
|.++...|++++|+..+++ |.++.++..+|.++...|++++|+..|+++++.+|++.....
T Consensus 108 --------------a~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l 168 (291)
T 3mkr_A 108 --------------ASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL 168 (291)
T ss_dssp --------------HHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --------------HHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHH
Confidence 8888888999999998887 888999999999999999999999999999999888764443
Q ss_pred HHH--HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 288 EYA--MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 288 ~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
..+ .++...|++++|+.+|+++++..|+++.++..+|.++.. |++++|+..+++++..+|+++.++.++|.++...|
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 333 334455888888888888888888888888888888888 88888888888888888888888888888888888
Q ss_pred ChhH-HHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 365 RPEA-AVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 365 ~~~~-A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
++.+ +..+++++++.+|++.... ....+.+.++++..-
T Consensus 249 ~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 249 KPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHH
Confidence 8876 4678888888888875432 233444445554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-27 Score=211.56 Aligned_cols=236 Identities=10% Similarity=0.030 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC-------hhHHHH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH-------IPGYIM 355 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~~~~~~ 355 (561)
..+..+|.++...|++++|+.+++++++.. .++.++..+|.++.. |++++|+..+++++...|.+ +.++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 344444444444444444444444444444 444455555555555 55555555555555554444 456666
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChH
Q 008550 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (561)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (561)
+|.++...|++++|+..+++++...|.. .++...|++++|+..+++++..+|.++.++..+|.++... |+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-cCHH
Confidence 6666666677777777777766666652 3455566677777777777777777777777788777777 7888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|+. .++..+|.++...|++++|..+|++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888887777777777778888888888888888888887777765 67778888888888888888888888888
Q ss_pred C------CccHHHHHHHHHH
Q 008550 515 N------SQNEAAKKGLERL 528 (561)
Q Consensus 515 ~------p~~~~~~~~l~~l 528 (561)
+ |++..++..+..+
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHT
T ss_pred ChhhcCCCchHHHHHHHHHh
Confidence 7 7777777666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=203.10 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=150.3
Q ss_pred ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHH
Q 008550 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (561)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (561)
|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l------------------------------------ 45 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWL------------------------------------ 45 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH------------------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------------------------------
Confidence 55667888888888888888888888888888888888877766
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCChHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII-----------GKNDEAILNFEKVRSIDPYIMTYM 286 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~ 286 (561)
|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++
T Consensus 46 ----g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 46 ----ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 77777888888888888888888888888888888888888 888888888888888888888888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
..+|.++...|++++|+..|+++++.+ +++.++..+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 888888888888888888888888877 777888888888877 888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHh
Q 008550 366 PEAAVIAFRGA 376 (561)
Q Consensus 366 ~~~A~~~~~~~ 376 (561)
+++|+..|+++
T Consensus 201 ~~~A~~~~~~~ 211 (217)
T 2pl2_A 201 AEEAARAAALE 211 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88887777765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=203.42 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLL 360 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 360 (561)
++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. |++++|+..++++++.+|+++.++..+|.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444 4444444444444444444444444444444
Q ss_pred Hhc-----------CChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 008550 361 LSM-----------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (561)
Q Consensus 361 ~~~-----------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (561)
... |++++|+..|+++++.+|++ .++..+|.++...|++++|+..|+++++.+ +++.++..+|.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence 444 55555555555555555554 345555555555555555555555555555 55555555555555
Q ss_pred hhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 429 SNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++
T Consensus 163 ~~-g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SM-GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55 5555555555555555555555555555555555555555555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=207.93 Aligned_cols=223 Identities=16% Similarity=0.160 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-------HHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-------PEVFVA 322 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~ 322 (561)
..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|.. +.++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 444455555555555555555555555554 444555555555555555555555555555544443 455555
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
+|.++.. |++++|+.++++++...|. +.++...|++++|+..+++++..+|.. .++..+|.++...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 5555555 5555555555555555544 334455555666666666666655554 34666666666666666
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+|+..+++++...|.++.++..+|.++... |++++|+.+++++++.+|+++.++..+|.++...|++++|+..++++++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666666666665 6666666666666666666666666666666666666666666666666
Q ss_pred hC
Q 008550 481 DW 482 (561)
Q Consensus 481 ~~ 482 (561)
..
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 66
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=221.59 Aligned_cols=355 Identities=14% Similarity=0.120 Sum_probs=268.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCcHHHHHHHHHHcCCc
Q 008550 112 YKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHN---RGAVACYKECLRHCPFFIEAITALAELGATP 188 (561)
Q Consensus 112 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (561)
..+|..+.+.|++++|+..++++. .+.++.+++.+|.+|...|++ ++|+..|++++.. ++.++..+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa-~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L------- 75 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLA-ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL------- 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHTCCTGGGTCC-------------------------------CHHHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH-------
Confidence 458899999999999999999863 245778899999999999998 9999999999976 55556665
Q ss_pred ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 008550 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIAS-----NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG 263 (561)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 263 (561)
|.++... +++++|+.+|+++++.. ++.+++.+|.+|...+
T Consensus 76 ---------------------------------g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 76 ---------------------------------GRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYP 120 (452)
T ss_dssp ---------------------------------HHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCG
T ss_pred ---------------------------------HHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 4433333 37899999999999854 4558999999999887
Q ss_pred CHHHH---HHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH----HHHHHhcCCCCHHHHHHHHHHHHh-c---CH
Q 008550 264 KNDEA---ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL----VHDLLSIDPSRPEVFVALSVLWER-K---DE 332 (561)
Q Consensus 264 ~~~~A---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~-~---~~ 332 (561)
...++ ...+.++.. +.++.+++.+|.++...+.++++... ++.+.. .++.+++.+|.++.. | ++
T Consensus 121 ~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp GGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccH
Confidence 65544 444444433 34578999999999999976665554 444433 345599999999998 8 99
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhc----CChhHHHHHHHHhHHhCCCh-HHHHHHHHH-H--HhcCCHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSM----KRPEAAVIAFRGAQELRPDL-RSYQGLVHS-Y--LQFSKVKEALY 404 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~-~--~~~~~~~~A~~ 404 (561)
++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.+ .+++.+|.+ + ...+++++|+.
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 9999999999999999999889999999776 79999999999998 554 779999998 5 57899999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNAS-----GREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLL 475 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 475 (561)
+|+++.+. .++.+++.+|.+|. . | ++++|+.+|+++. |.++.+++.+|.+|.. ..++++|+.+|
T Consensus 273 ~~~~Aa~~--g~~~A~~~Lg~~y~-~-G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 273 YLDNGRAA--DQPRAELLLGKLYY-E-GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHH-H-CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHH-c-CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 99999865 58999999999998 4 6 9999999999998 8999999999999887 44999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 476 ERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 476 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+++.+.. ...+.+.+|.+|.. ..++.+|..+|+++.+..+ +.+...+..+..
T Consensus 346 ~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~ 401 (452)
T 3e4b_A 346 LTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEA 401 (452)
T ss_dssp HHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHT
T ss_pred HHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 9998853 34788999999985 4689999999999988754 455555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=224.99 Aligned_cols=288 Identities=15% Similarity=0.153 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMT 284 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 284 (561)
...++..|.++...|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34456679999999999999999999999999884 67889999999999999999999999876 334467
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cC--------------------HhHHHH
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KD--------------------ERGALS 337 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~--------------------~~~A~~ 337 (561)
++..+|.++...|++++|+..+++++...|.. ..++..+|.++.. |+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 88899999999999999999999998876543 4478888888888 88 889999
Q ss_pred HHHHHHhc------cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHH
Q 008550 338 YAEKSIRI------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 338 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 404 (561)
++++++.+ .|....++..+|.++...|++++|+..++++++..+.. .++..+|.++...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88888876 23334567888888888888888888888888774432 257788888888888888888
Q ss_pred HHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHH
Q 008550 405 AAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 405 ~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~ 472 (561)
.+++++...|.. ..++..+|.++... |++++|+.++++++...+.. ..++..+|.++...|++++|+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888776654 66778888888887 88888888888888765433 457778888888888888888
Q ss_pred HHHHHHHhhCCC---h----HHHHHHHHHHHHcCCHHH
Q 008550 473 SLLERYLKDWAD---D----SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 473 ~~~~~~~~~~~~---~----~~~~~la~~~~~~g~~~~ 503 (561)
.+++++++..+. . .++..+|.++...|+...
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 888888776421 1 577788888888887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=219.95 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=252.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHhc------CCC
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSI------DPS 315 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~ 315 (561)
+.....+..+|.++...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567889999999999999999999999999999984 57889999999999999999999998876 233
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCC--------------------hhH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKR--------------------PEA 368 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~--------------------~~~ 368 (561)
...++..+|.++.. |++++|+.++++++...|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46689999999999 99999999999999887654 3488999999999999 999
Q ss_pred HHHHHHHhHHhC---CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHhhhcCChH
Q 008550 369 AVIAFRGAQELR---PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA------KALKLVGDVHASNASGRE 435 (561)
Q Consensus 369 A~~~~~~~~~~~---~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~ 435 (561)
|+..+.+++... ++. .++..+|.++...|++++|+..+++++...|... .++..+|.++... |+++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-GEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CChH
Confidence 999999998762 222 3588999999999999999999999998766543 3889999999998 9999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHcCCHH
Q 008550 436 KAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~ 502 (561)
+|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+. ..++..+|.++...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999887655 668889999999999999999999999987542 168899999999999999
Q ss_pred HHHHHHHHHHhcC------CccHHHHHHHHHHHHhccCC
Q 008550 503 EALSHYEAALRIN------SQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 503 ~A~~~~~~al~~~------p~~~~~~~~l~~l~~~~~~~ 535 (561)
+|..+|++++++. +....++..++.++..++..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999999983 44477888999999888643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=216.76 Aligned_cols=282 Identities=16% Similarity=0.136 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCC
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPY 281 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~ 281 (561)
......++..|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34444455566666666666666666666666666665 35666666666666666666666666655 333
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
...++..+|.++...|++++|+..+++++...+... ..|....++..+|.++.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG---------------------------DRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh---------------------------chHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554411000 02222334455555555
Q ss_pred hcCC-----------------hhHHHHHHHHhHHhCC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-
Q 008550 362 SMKR-----------------PEAAVIAFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS- 416 (561)
Q Consensus 362 ~~~~-----------------~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 416 (561)
..|+ +++|+..+++++...+ +. .++..+|.++...|++++|+..+++++...|..
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555555544321 11 246667777777777777777777776655432
Q ss_pred -----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 417 -----AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 417 -----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
..++..+|.++... |++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 23677778888877 88888888888887766533 4577888888888888888888888888765422
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 486 -------SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 486 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
.++..+|.++...|++++|..+|++++++.+.....
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXX 379 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 578899999999999999999999999998765443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=215.11 Aligned_cols=284 Identities=12% Similarity=0.036 Sum_probs=207.8
Q ss_pred CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------C
Q 008550 172 PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR------F 245 (561)
Q Consensus 172 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~ 245 (561)
|.....+..++..+...+++..+...+.+.....+.+. ......++..|.++...|++++|+..+++++.. .
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL--RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 44455667788889999999999999999988755321 112234567799999999999999999999987 4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhcCC-----------------HhHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYMDEYAMLLKVKCD-----------------YSKL 302 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~A 302 (561)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 666789999999999999999999999999987 34445566677777777776 5555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (561)
+.++++++...+.. ...+....++..+|.++...|++++|+..++++++..+.
T Consensus 203 ~~~~~~al~~~~~~---------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 203 VEFYQENLKLMRDL---------------------------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 55444443321100 001122345666777777777777777777777766543
Q ss_pred h-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC
Q 008550 383 L-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEP 449 (561)
Q Consensus 383 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p 449 (561)
. .++..+|.++...|++++|+..+++++...|.. ..++..+|.++... |++++|+.++++++...+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 2 256777888888888888888888877766543 56777888888887 888888888888887643
Q ss_pred CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 450 GY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 450 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.. ..++..+|.++...|++++|+.+++++++..+..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 32 3477888999999999999999999988877643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=207.09 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHH
Q 008550 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTY 285 (561)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 285 (561)
...+..|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++.. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455668888888888888888888888888874 66778888888888888888888888776 3333556
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cC--------------------HhHHHHH
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KD--------------------ERGALSY 338 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~--------------------~~~A~~~ 338 (561)
+..+|.++...|++++|+..+++++...|.. ..++..+|.++.. |+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6677777777777777777777766654332 1245555555555 55 4444444
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-
Q 008550 339 AEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS- 416 (561)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 416 (561)
+++++...+.... .+.. .++..+|.++...|++++|+..+++++...|..
T Consensus 166 ~~~a~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 166 YEENLSLVTALGD----------------------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHHHHHHTC----------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC----------------------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 4444432110000 0000 235556666666666666666666666543321
Q ss_pred -----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 417 -----AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 417 -----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
..++..+|.++... |++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 23666777777776 77777777777777665443 4567778888888888888888888887765321
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 -------SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.++..+|.++...|++++|..+|++++++.+..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 477888888888888888888888888887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=206.61 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
..++..|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++...+..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 3455666677777777777777777777666663 445566666666666666666666555431000
Q ss_pred HHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCC
Q 008550 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSK 398 (561)
Q Consensus 326 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ 398 (561)
+ ..|....++..+|.++...|++++|+..++++++..+.. .++..+|.++...|+
T Consensus 77 ----~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 ----G--------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ----T--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c--------------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 0 022223455566666666666666666666665553221 246677777777777
Q ss_pred --------------------HHHHHHHHHHHHHH------CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 399 --------------------VKEALYAAREAMKA------MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 399 --------------------~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+++|+..+++++.. .|....++..+|.++... |++++|+.+++++++..|...
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcC
Confidence 77777777777654 233356889999999998 999999999999998755432
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-
Q 008550 453 ------GAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKLAQVFAATNMLQEALSHYEAALRINSQN- 518 (561)
Q Consensus 453 ------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 518 (561)
.++..+|.++...|++++|+..+++++...+. ..++..+|.++...|++++|..++++++...|..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 38899999999999999999999999987543 2688999999999999999999999999986654
Q ss_pred -----HHHHHHHHHHHHhcc
Q 008550 519 -----EAAKKGLERLEKQMK 533 (561)
Q Consensus 519 -----~~~~~~l~~l~~~~~ 533 (561)
..++..++.++...+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcC
Confidence 457888898888776
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-26 Score=206.68 Aligned_cols=244 Identities=11% Similarity=0.007 Sum_probs=150.1
Q ss_pred HccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 227 ASNDYKGGLELFAELLQRF----PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
..|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4577888888888888763 345677788888888888888888888888888887777777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
+..+++++...|.++.++..+|.++.. |++++|+..+++++...|.+.......+.. ...|++++|+..+.+++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence 777777777777777777777777766 777777777777777777666444443322 444566666666666655555
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ----SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
.......++.++...++.++|+..+++++...|. ++.++..+|.++... |++++|+..|++++..+|++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~--- 251 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANNVHNFVE--- 251 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCTTCHH---
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCchhHHH---
Confidence 5433334555555555555555555555443332 134444555555544 55555555555555554443222
Q ss_pred HHHHHHHcCChHHHHHHH
Q 008550 458 LAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~ 475 (561)
.+.++...|++++|++.+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 133444444444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-25 Score=199.04 Aligned_cols=247 Identities=11% Similarity=0.031 Sum_probs=194.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH
Q 008550 258 VDAIIGKNDEAILNFEKVRSID----PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE 332 (561)
Q Consensus 258 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 332 (561)
.....|++++|+..|+++++.. |.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. |++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3344578889999999988873 44567888889999999999999999999998888888888889988888 899
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
++|+.++++++..+|.++.++..+|.++...|++++|+..++++++..|++........+....|++++|+..+++++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999999888888888888999998899999999999888888888754333334456678888888888888888
Q ss_pred CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH
Q 008550 413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (561)
.|.+...+. ++.++... ++.++|+..+++++...|.. +.++..+|.++...|++++|+..|++++...|++ +
T Consensus 174 ~~~~~~~~~-~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 249 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--F 249 (275)
T ss_dssp SCCCSTHHH-HHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--C
T ss_pred CCcchHHHH-HHHHHHHh-cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--H
Confidence 887766654 55566665 77788888888887766533 5778888888888888888888888888888766 2
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~ 508 (561)
...+.++..+|++++|++.|
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 23366777888888888776
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=192.71 Aligned_cols=214 Identities=19% Similarity=0.132 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (561)
+..++.+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.. .++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4566777777777 788888888888888888778888888888888888888888888888887766 55778888888
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 474 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 474 (561)
..|++++|+..++++++..|.++.++..+|.++... |++++|+..++++++..|.++.++..+|.++...|++++|+..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888888888888888888888887 8888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 475 LERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 475 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
++++++..|+. .++..+|.++...|++++|..+|+++++++|+++.++..+..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 88888888765 7888888888888999999999999999999888888888777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=192.33 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++...|++++|+..++
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444443 334445555555555555555555
Q ss_pred HHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
+++...|+++.++..+|.++... |++++|+.+++++++.+|+++.++..++.+
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555555555555555555554 555555555555555555555555444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=194.64 Aligned_cols=249 Identities=11% Similarity=0.042 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHh-------cCCH-------hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKV-------KCDY-------SKLSKLVHDLLS-IDPSRPEVFVALSVLWER- 329 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~- 329 (561)
++|+..|++++..+|.++.+|..+|..+.. .|++ ++|+..|++++. ..|++..+|..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 445555555555555555555555555442 3553 566666666666 466666666666666665
Q ss_pred cCHhHHHHHHHHHHhccCCChh-HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH-hcCCHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIP-GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL-QFSKVKEALYAA 406 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~A~~~~ 406 (561)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.. ..|...+.+.. ..|++++|...|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666554 66666666666666666666666666665554 33444444432 257777777777
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL---EPG-YLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
+++++.+|+++.+|..++.++... |++++|+.+|++++.. .|+ ...+|..++..+...|++++|..+++++++..
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 777777777778887777777776 7888888888888774 442 56677777777777788888888888887777
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
|++.....++.+ ..-.+++.++|+++.+.+.|+
T Consensus 272 p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 272 REEYEGKETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp TTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred ccccccchHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 764100011111 111156677888887776554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=178.17 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=134.5
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
+++.+|+.+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 345677777777777777777777777777777776 5577777777777778888888888777888888888888887
Q ss_pred HhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
+... ++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.+ .++..+|.+|..+|++++|+
T Consensus 83 ~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 7777 788888888888888888888888888888888888888888888888877766 77788888888888888888
Q ss_pred HHHHHHHhcCCccHH
Q 008550 506 SHYEAALRINSQNEA 520 (561)
Q Consensus 506 ~~~~~al~~~p~~~~ 520 (561)
.+|+++++++|+++.
T Consensus 162 ~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 162 KYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTHHHHH
T ss_pred HHHHHHHhCCccCHH
Confidence 888888888887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-21 Score=198.01 Aligned_cols=402 Identities=11% Similarity=0.062 Sum_probs=285.0
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhccc-CccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHH
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKI-VPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 125 (561)
-...+.|...|.+.+|+..|++++ ..|+ ..+ ....-..++++.++. +..
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~----------------------------n~~LqnlLi~tAIka-D~~ 1038 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSE----------------------------HRNLQNLLILTAIKA-DRT 1038 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccc----------------------------cHHHHHHHHHHHHHh-Chh
Confidence 345566679999999999999999 4543 111 111111233333333 333
Q ss_pred HHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCC
Q 008550 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205 (561)
Q Consensus 126 ~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (561)
+...+++++. ... .-.+|.++...|.+++|..+|+++- .+..+...+. ...++++++.+.+.+.
T Consensus 1039 Rv~eyI~kLd-~~d----~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLi---e~i~nldrAiE~Aerv---- 1102 (1630)
T 1xi4_A 1039 RVMEYINRLD-NYD----APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLI---EHIGNLDRAYEFAERC---- 1102 (1630)
T ss_pred hHHHHHHHhh-hcc----HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHH---HHHhhHHHHHHHHHhc----
Confidence 3333333332 100 1226777777777777777777762 2222222221 1334444444444322
Q ss_pred CCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
..+..|..+ |.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .+
T Consensus 1103 ----n~p~vWsqL---AKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~I 1169 (1630)
T 1xi4_A 1103 ----NEPAVWSQL---AKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YV 1169 (1630)
T ss_pred ----CCHHHHHHH---HHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cc
Confidence 124444433 99999999999999999775 788999999999999999999999999999887543 23
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
-..+|.+|.+.+++++. +.| + ..+ +...+..+|..+.. |++++|..+|.++ ..|..+|.++.++|
T Consensus 1170 dt~LafaYAKl~rleel-e~f---I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAEL-EEF---I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 1235 (1630)
T ss_pred cHHHHHHHHhhcCHHHH-HHH---H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhC
Confidence 33588999999988853 333 2 233 44566689999998 9999999999986 47889999999999
Q ss_pred ChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
++++|++.++++ .+..+|...+.++...|++..|..+... +.. +++.+..++..|... |.+++|+.+++++
T Consensus 1236 e~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~-G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1236 EYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR-GYFEELITMLEAA 1306 (1630)
T ss_pred CHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 999999999988 3347799999999999999999987764 333 456666888899988 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCC-----Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 008550 445 LRLEPGYLGAALALAELHVIE--GRNGDAVSLLERYLKDWA-----DD-SLHVKLAQVFAATNMLQEALSHYEAALRI-- 514 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~-----~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 514 (561)
+.++|.+...+..++.++.+- ++..++++.|...+.+.+ .. ..|..+..+|.+-|+++.|....-.....
T Consensus 1307 L~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1307 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred hccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence 999999999998888877654 678888899988877765 22 78999999999999999999333222211
Q ss_pred ----------CCccHHHHHHHHHHHH
Q 008550 515 ----------NSQNEAAKKGLERLEK 530 (561)
Q Consensus 515 ----------~p~~~~~~~~l~~l~~ 530 (561)
.+.|++.++.....+-
T Consensus 1387 ~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1387 KEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred hhHHHHHHhcccccHHHHHHHHHHHH
Confidence 4667777666655543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=183.30 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=160.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+|+++.+++.+|.++...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 355666666666666666666667666666666 5556666666666666 55555555555555543
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCChHHHHHHHHHHHh-
Q 008550 321 VALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ- 395 (561)
Q Consensus 321 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~- 395 (561)
+ ++.++..+|.++.. .+++++|+..|+++++.. ...++..+|.+|..
T Consensus 72 -------------------------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 72 -------------------------N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDG 123 (273)
T ss_dssp -------------------------T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHC
T ss_pred -------------------------C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcC
Confidence 2 44555555666655 666667777666666653 33556677777776
Q ss_pred ---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 008550 396 ---FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEPGYLGAALALAELHVI---- 464 (561)
Q Consensus 396 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 464 (561)
.+++++|+.+|+++++.. ++.++..+|.++.. . +++++|+.+|+++++.. ++.++..+|.++..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP-KDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSS
T ss_pred CCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence 777777777777777654 56777777777776 5 77788888888877663 46777788888888
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
.+++++|+.+++++++..+ ..++..+|.+|.. .+++++|+.+|+++++..|++...+
T Consensus 199 ~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888888888877755 5677788888887 8888888888888888877654443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=186.56 Aligned_cols=207 Identities=15% Similarity=0.117 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYL 394 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 394 (561)
+.++..+|.++.. |++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.. .++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 4556666666666 666666666666666666666666666666666666666666666666666655 44666666666
Q ss_pred hcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 395 QFSKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
..|++++|+..+++++. ..|.++.++..+|.++... |++++|+.+++++++..|.++.++..+|.++...|++++|+
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777777666 5666667777777777776 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 473 SLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 473 ~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
..++++++..|.. ..+..++.++...|++++|..+++++++.+|+++.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7777777776655 667777777777777777777777777777777766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-23 Score=180.80 Aligned_cols=212 Identities=17% Similarity=0.149 Sum_probs=139.4
Q ss_pred CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHH
Q 008550 313 DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (561)
Q Consensus 313 ~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (561)
.|.++.++..+|.++.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+ .++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34445555556655555 666666666666666666666666666666666666666666666666665554 3456666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 391 HSYLQF-SKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 391 ~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
.++... |++++|+..+++++. ..|.+..++..+|.++... |++++|+..++++++..|.++.++..+|.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 666666 666666666666666 4455566667777777766 777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 468 NGDAVSLLERYLKDWA-DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~-~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
+++|+..++++++..| .+ ..+..++.++...|+.++|..+++.+.+.+|+++.+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7777777777777666 44 5566666777777777777777777777777777765544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-23 Score=185.14 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555444444444444444444
Q ss_pred h-cCHhHHHHHHHHHHh--ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHH
Q 008550 329 R-KDERGALSYAEKSIR--IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 329 ~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 404 (561)
. |++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.+ .++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4 444444444444444 334444444444444444444444444444444444443 334444444444444444444
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 453 (561)
.+++++...|.+...+..++.++... |++++|..+++++++..|+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCHH
Confidence 44444444444444444444444444 4444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-22 Score=181.30 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI----IGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
....+..|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 34556779999999999999999999998 7889999999999999 999999999999999985 789999999
Q ss_pred HHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 291 MLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 291 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
.++.. .+++++|+..++++++. .++.++..+|.++.. +++++|+.+|+++++.. ++.++..+|.++.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 99999 99999999999888876 367777777777653 56667777777766654 4556666666666
Q ss_pred h----cCChhHHHHHHHHhHHhCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh----
Q 008550 362 S----MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS---- 429 (561)
Q Consensus 362 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 429 (561)
. .+++++|+..|+++++.. ...++..+|.+|.. .+++++|+.+++++++..| +.++..+|.++..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 6 666666666666666542 22445556666666 6666666666666655543 5555566666655
Q ss_pred hcCChHHHHHHHHHHHHhCCC
Q 008550 430 NASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~p~ 450 (561)
. +++++|+.+|+++++..|.
T Consensus 235 ~-~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 235 T-RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp S-CCSTTHHHHHHHHHHHTCH
T ss_pred c-cCHHHHHHHHHHHHHcCCH
Confidence 4 5566666666666655554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-23 Score=189.16 Aligned_cols=257 Identities=11% Similarity=0.092 Sum_probs=217.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCH------
Q 008550 158 RGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY------ 231 (561)
Q Consensus 158 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------ 231 (561)
++|+..|++++..+|.++.+|..++...... +..+...|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~---------------------------------~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS---------------------------------SKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------HHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------------------chhhhhccchhhcccc
Confidence 7899999999999999999999885443211 1112245664
Q ss_pred -HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 232 -KGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-YMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 232 -~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
++|+..|+++++ .+|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++...|++++|+..|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999 69999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHH-h-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh---CCC-
Q 008550 309 LLSIDPSRPEVFVALSVLWE-R-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL---RPD- 382 (561)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~-~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~- 382 (561)
+++..|....+|...+.+.. . |++++|+..|+++++..|+++.+|..+|.++...|++++|+..|++++.. .|+
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 99999999888887777654 3 99999999999999999999999999999999999999999999999996 443
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 383 L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 383 ~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
. ..|..++..+...|++++|..+++++++..|+++..... +.+ . .++ +.+.+.|.++..+..+|.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~-~---~r~--------~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-ALL-V---DRY--------KFMDLYPCSASELKALGY 305 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-HHH-H---TTT--------CBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchH-HHH-H---HHH--------HhcccCCCCHHHHHhcCC
Confidence 2 568888999999999999999999999999976533221 222 1 111 456788999888877663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=176.31 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666555555555555555555
Q ss_pred Hh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHH
Q 008550 328 ER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 328 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
.. ++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.+ .++..+|.++...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55 555555555555555555555555555555555555555555555555555554 3455555555555555555555
Q ss_pred HHHHHHHCCC
Q 008550 406 AREAMKAMPQ 415 (561)
Q Consensus 406 ~~~~~~~~p~ 415 (561)
|+++++.+|+
T Consensus 164 ~~~al~~~p~ 173 (184)
T 3vtx_A 164 FKKALEKEEK 173 (184)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHhCCcc
Confidence 5555555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-21 Score=200.34 Aligned_cols=393 Identities=12% Similarity=0.027 Sum_probs=286.7
Q ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHH-------------------------HHHHhhhchhH
Q 008550 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLII-------------------------LGDSLFRDREY 59 (561)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------------------------~g~~~~~~~~~ 59 (561)
--.++.++..|++.+|+.+.+.++.. + ...+.......++. +|.++...|.|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~-~--s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD-N--SVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC-C--CcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 34578888999999999999998843 1 11111112222222 36677777777
Q ss_pred HHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCccc
Q 008550 60 RRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR 139 (561)
Q Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~ 139 (561)
++|...|+++-... ..+...+...|++++|++.++++ .
T Consensus 1066 EEAf~IYkKa~~~~--------------------------------------~A~~VLie~i~nldrAiE~Aerv----n 1103 (1630)
T 1xi4_A 1066 EEAFAIFRKFDVNT--------------------------------------SAVQVLIEHIGNLDRAYEFAERC----N 1103 (1630)
T ss_pred HHHHHHHHHcCCHH--------------------------------------HHHHHHHHHHhhHHHHHHHHHhc----C
Confidence 77777777753210 11222333777888888887765 3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
.+.+|+.+|..+...|++++|+..|.++ +++..+..+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eV-------------------------------------- 1140 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV-------------------------------------- 1140 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHH--------------------------------------
Confidence 4678888888888888888888888765 555555544
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
|.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. ...+...+..+|..+...|++
T Consensus 1141 --a~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1141 --VQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred --HHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCH
Confidence 88888999999999999999887744 3334458999999998885 44442 233446677899999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
++|..+|.++ ..|..++.++.. |++++|++.+.++ .+..+|...+.++...|++..|..+... +.
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence 9999999885 478899999999 9999999999998 5678999999999999999999988774 33
Q ss_pred hCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHhCC-----CCH
Q 008550 379 LRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKAKKFYESALRLEP-----GYL 452 (561)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~p-----~~~ 452 (561)
.+|+ .+..++..|...|.+++|+.+++.++.++|.+...+..+|.++.+- .++..++++.|...+.+.| .+.
T Consensus 1278 v~~d--eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1278 VHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 3333 3557888899999999999999999999999999998888887653 2556778888887777766 667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------------HhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 453 GAALALAELHVIEGRNGDAVSLLERY-------------LKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
..|..+..+|.+-|+++.|+..+-.. +....+.++++.....|...+ ..++..+..++
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~--P~~lndLl~~l 1426 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVL 1426 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC--hHHHHHHHHHh
Confidence 88999999999999999998443332 222233478888888887554 34444444444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=198.44 Aligned_cols=301 Identities=15% Similarity=0.105 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHH----HHHHHHhCCHHHHH-----------HHHHHH
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEM----AKVDAIIGKNDEAI-----------LNFEKV 275 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l----a~~~~~~~~~~~A~-----------~~~~~~ 275 (561)
.....+......+..+++++|..+++++.+..+ .+..+.... .+.....+.++.+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 334455557778899999999999999876432 345444222 22333344445554 555554
Q ss_pred HhhCCCChH------HHHHHHHHHHhcCCHhHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHh-cCHhHHHHHHHHH
Q 008550 276 RSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSI---DPS---RPEVFVALSVLWER-KDERGALSYAEKS 342 (561)
Q Consensus 276 ~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~-~~~~~A~~~~~~~ 342 (561)
-. .|.... .++..|.++...|++++|+..+++++.. .++ .+.++..+|.++.. |++++|+.+++++
T Consensus 91 ~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 91 DK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 333323 3445899999999999999999999987 233 35789999999999 9999999999999
Q ss_pred HhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 343 IRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 343 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+.+.+... .++..+|.++...|++++|+..++++++..+.. .++.++|.+|...|++++|+.++++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99855443 578999999999999999999999999885432 3688999999999999999999999
Q ss_pred HHH-----HC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---hHHHHHH
Q 008550 409 AMK-----AM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLE-----PGYLGAALALAELHVIEGR---NGDAVSL 474 (561)
Q Consensus 409 ~~~-----~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~ 474 (561)
++. .+ |..+.++..+|.++... |++++|+.++++++++. |.....+..++.++...|+ +.+|+..
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKL-GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999 46 77789999999999998 99999999999999874 3333345679999999999 7888888
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 475 LERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 475 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
+++.-.......++..+|.+|...|++++|..+|++++++..
T Consensus 329 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 877621111227889999999999999999999999988643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=175.51 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=145.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 357 (561)
.|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++.. |++++|+..+++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666 6666666666676666777777777777
Q ss_pred HHHHhc-CChhHHHHHHHHhHH--hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 358 NLLLSM-KRPEAAVIAFRGAQE--LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 358 ~~~~~~-~~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.++... |++++|+..++++++ ..|.. ..+..+|.++...|++++|+..++++++..|+++.++..+|.++... |+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CC
Confidence 777777 777777777777777 34443 45777777777777777777777777777777777777777777776 77
Q ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 434 REKAKKFYESALRLEP-GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+++|+..++++++..| .++..+..++.++...|++++|..+++.+.+..|++
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 7777777777777777 777777777777777777777777777777777765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=177.09 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=173.8
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (561)
+.++..++.+|.++.. |++++|+..|++++...| .+..+++.+|.++...|++++|+..|+++++.+|++ .++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4566788888888887 888888888888888887 777888888888888888888888888888888887 5688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPG--YLGAALALAEL 461 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~ 461 (561)
.++...|++++|+..++++++.+|+++ .++..+|.++... |++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 888888888888888888888888887 6688899999988 9999999999999999999 88999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 462 HVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+...|+ ..++++....+.. .....+......+.+++|+.+|+++++++|+++.+...+..+...+
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSN-KEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHH-----HHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 976654 4456666665444 1223444556678899999999999999999999999999887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=202.26 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=144.5
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH-hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+++++..+++.....|.++.+++.+|.++.. |++ ++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555566666666666666666666666666 666 66666666666666666666666666666666666666666666
Q ss_pred HHhCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-------cCChHHHHHH
Q 008550 377 QELRPDLRSYQGLVHSYLQF---------SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-------ASGREKAKKF 440 (561)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------~~~~~~A~~~ 440 (561)
++.+|+..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.++... .|++++|+.+
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 66666655566666666666 6777777777777777777777777777666541 0556777777
Q ss_pred HHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 441 YESALRLEP---GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 441 ~~~a~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
|+++++++| .++.++..+|.++...|++++|+..|+++++..|+. .++..++.++..+|++++|++.+.+.
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777777777 667777777777777777777777777777777665 56677777777777777777665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=201.16 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=204.5
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY-SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
+.+++++..+.......|.+..++..+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++.. |++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4578889999999999999999999999999999999 999999999999999999999999999999 99999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhc---------CChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc--------CCHHHH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSM---------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------SKVKEA 402 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A 402 (561)
++++.+|+ ..++..+|.++... |++++|+..|+++++.+|++ .+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999 79999999999999 99999999999999999998 6799999999999 999999
Q ss_pred HHHHHHHHHHCC---CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 403 LYAAREAMKAMP---QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 403 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+..|++++..+| +++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...|++++|+..+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999 9999999999999998 9999999999999999999999999999999999999999887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=171.68 Aligned_cols=208 Identities=9% Similarity=0.076 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
.++..++.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3445555555555555555555555555555555 444555555555555555555555555555555555555555555
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC--h-HHHHHHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQGLVHSYL 394 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~ 394 (561)
++.. |++++|+..++++++..|+++ .++..+|.++...|++++|+..|+++++.+|+ + .++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555 555555555555555555554 34555555555666666666666666655555 4 34555555554
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 462 (561)
..|+ ..++++....+.+...+. +...... +.+++|+.+|+++++++|+++.+...++.+.
T Consensus 165 ~~~~-----~~~~~a~~~~~~~~~~~~--~~~~~~~-~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNGA-----DVLRKATPLASSNKEKYA--SEKAKAD-AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHH-----HHHHHHGGGTTTCHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhcccCCHHHHH--HHHHHHH-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4332 233444444444433322 2222233 5566666666666666666666665555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=192.12 Aligned_cols=308 Identities=11% Similarity=0.052 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHH--HHHH
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKI--ASCH 118 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--a~~~ 118 (561)
......+.-...+..++++++|...++++.+.-+.... ..+...++.+ .+..
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~--------------------------~~~~~~y~~ll~~r~~ 63 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEE--------------------------DQDLHLYYSLMEFRHN 63 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCC--------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcc--------------------------chHHHHHHHHHHHHHH
Confidence 34445555566778899999999999998776432210 0111122222 2222
Q ss_pred HhcCCHHHHH-----------HHHhcCCCcccchh------HHHHHHHHHHhcCChhhHHHHHHHHHhcC---CCcHHHH
Q 008550 119 FALGETKAAI-----------VEMEGIPSKARNLQ------MSLLMAKLYRNSRHNRGAVACYKECLRHC---PFFIEAI 178 (561)
Q Consensus 119 ~~~~~~~~A~-----------~~l~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~ 178 (561)
+..+.+..+. ..++.+...+.... .++.+|.++...|++++|+..|++++... |+.....
T Consensus 64 ~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 143 (383)
T 3ulq_A 64 LMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKA 143 (383)
T ss_dssp HHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH
T ss_pred HHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 3334444444 45555433332222 34559999999999999999999999863 3222111
Q ss_pred HHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHH
Q 008550 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-------IHI 251 (561)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 251 (561)
..++..|.++...|++++|+..++++++..+.. ..+
T Consensus 144 -------------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 144 -------------------------------------EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp -------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 122344999999999999999999999874332 457
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHhcCCHhHHHHHHHHHHh-----cC-CCCHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYMDEYAMLLKVKCDYSKLSKLVHDLLS-----ID-PSRPEV 319 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~ 319 (561)
+..+|.++...|++++|+.+|+++++..|... .++..+|.++...|++++|+.++++++. .. |..+.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 88899999999999999999999988755432 3666777777777777777777777766 33 444555
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccC-----CChhHHHHHHHHHHhcCC---hhHHHHHHHHhHHhCCCh-HHHHHH
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDE-----RHIPGYIMKGNLLLSMKR---PEAAVIAFRGAQELRPDL-RSYQGL 389 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~l 389 (561)
+..+|.++.. |++++|+.++++++.+.+ .....+..+|.++...|+ +.+|+..+++.- ..|.. .++..+
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 345 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 6666666666 666666666666655422 111223445555555555 444444444431 00111 234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
|.+|...|++++|..++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555555555555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=201.46 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=127.8
Q ss_pred CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHH
Q 008550 313 DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLV 390 (561)
Q Consensus 313 ~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~ 390 (561)
.|++++++..+|.++.. |++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|++ .++.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777 777777777777777777777777777777777777777777777777777776 5577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
.++..+|++++|++.|+++++++|+++.++.++|.++... |++++|+..|+++++++|+++.++.++|.++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 7777777777777777777777777777777777777776 777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhCCC
Q 008550 471 AVSLLERYLKDWAD 484 (561)
Q Consensus 471 A~~~~~~~~~~~~~ 484 (561)
|.+.++++++..|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 77777777766544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=198.87 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=159.3
Q ss_pred hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
..|++++++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.. |++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4688889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (561)
|.++..+|++++|+..|+++++++|++ .++.++|.++...|++++|+..|+++++++|+++.++..+|.++... |+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc-ccHH
Confidence 999999999999999999999999988 67999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhCCC
Q 008550 436 KAKKFYESALRLEPG 450 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~ 450 (561)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-20 Score=165.10 Aligned_cols=227 Identities=8% Similarity=-0.022 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHhccCCChhHHHHHHHHH----Hhc---CChhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGYIMKGNLL----LSM---KRPEAA 369 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A 369 (561)
++|+..+.+++.++|++..+|...+.++.. + ++++++.+++.++..+|++..+|..++.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 456666666666666666666666666655 5 666666666666666666666666666666 444 567777
Q ss_pred HHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC------hHHHHHH
Q 008550 370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK--EALYAAREAMKAMPQSAKALKLVGDVHASNASG------REKAKKF 440 (561)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~------~~~A~~~ 440 (561)
+.++.++++.+|.+ .+|...+.+....|.++ +++.++.++++.+|.+..+|..++.++... +. +++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhhHHHHHHH
Confidence 77777777777776 56777777777777776 788888888888888888888888877776 65 7888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhC---CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 008550 441 YESALRLEPGYLGAALALAELHVIEGRNGD-AVSLLERYLKDW---ADD-SLHVKLAQVFAATNMLQEALSHYEAALR-I 514 (561)
Q Consensus 441 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~---~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~-~ 514 (561)
+.+++..+|++..+|..++.++...|+... ...++++++... +.+ .++..++.++.+.|+.++|+++|+.+.+ .
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 888888888888888888888888887555 445666666654 333 6788888888888888888888888886 7
Q ss_pred CCccHHHHHHHHH
Q 008550 515 NSQNEAAKKGLER 527 (561)
Q Consensus 515 ~p~~~~~~~~l~~ 527 (561)
+|-....|...+.
T Consensus 289 Dpir~~yW~~~~~ 301 (306)
T 3dra_A 289 NPIRSNFWDYQIS 301 (306)
T ss_dssp CGGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 8888888776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-18 Score=169.89 Aligned_cols=227 Identities=7% Similarity=-0.018 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH-HHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL-SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
.....+|++++...|..+.+|+..+..... |+.++|+ ..|++++...|.+...|...+.+....|+++.|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345678999999999999999999999988 9999997 99999999999999999999999999999999999999998
Q ss_pred Hh-----------CCC-----------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHhhhcCC
Q 008550 378 EL-----------RPD-----------L-RSYQGLVHSYLQFSKVKEALYAAREAMKA-MPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 378 ~~-----------~~~-----------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.. .|. . .+|...+....+.|..+.|..+|.++++. .+....++...+.+.....++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 75 243 2 35888888888999999999999999987 445567777777776665355
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---h-HHHHHHHHHHHHcCCHHHHHHHHH
Q 008550 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD---D-SLHVKLAQVFAATNMLQEALSHYE 509 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~la~~~~~~g~~~~A~~~~~ 509 (561)
++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|+ . .+|..........|+.+.+.+.++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998884 2 789999999999999999999999
Q ss_pred HHHhcCCccHHHHHHHH
Q 008550 510 AALRINSQNEAAKKGLE 526 (561)
Q Consensus 510 ~al~~~p~~~~~~~~l~ 526 (561)
++.+..|+++....-..
T Consensus 566 R~~~~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 566 RFFEKFPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHSTTCCHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHH
Confidence 99999999876554443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=185.63 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
....++..|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555542 3333444555555555555555555555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=186.86 Aligned_cols=322 Identities=11% Similarity=-0.005 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 117 CHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
...+.|+.++|...++++. .+.+|..+|..+...|++++|+..|.++ .++..+...
T Consensus 12 ll~~~~~ld~A~~fae~~~----~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V--------------- 67 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV--------------- 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHH---------------
Confidence 3346778888888888872 2368889999999999999999988764 233333333
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++.
T Consensus 68 -------------------------~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-- 119 (449)
T 1b89_A 68 -------------------------VQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-- 119 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTTC--
T ss_pred -------------------------HHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC--
Confidence 44455568888888877777765333 66777788888888888887777642
Q ss_pred hhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHH
Q 008550 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM 355 (561)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 355 (561)
| +..+|..+|..+...|++++|..+|.++ ..|..++.++.. |++++|++.++++ .++.+|..
T Consensus 120 ---p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~ 182 (449)
T 1b89_A 120 ---P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE 182 (449)
T ss_dssp ---C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred ---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHH
Confidence 3 3357888888888888888888888766 467788888888 8888888888887 36777888
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-cCCh
Q 008550 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGR 434 (561)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~ 434 (561)
.+.++...|+++.|..+....+ ..|+. ...++..|.+.|++++|+.++++++..++.+...+..+|.++.+- .++.
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~-~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV-VHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT-TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888866665422 34433 335677788888888888888888888888888888888777653 1344
Q ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------------CCChHHHHHHHHHHH
Q 008550 435 EKAKKFYESALRLEP-----GYLGAALALAELHVIEGRNGDAVSLLERYLKD-------------WADDSLHVKLAQVFA 496 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~la~~~~ 496 (561)
.+.++.|...+.+.| .++..|..+..+|...++++.|+..+-..... -.+.++++.....|.
T Consensus 260 ~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 260 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 555666655555555 56677888888888888888877755443221 122366666666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 008550 497 ATNMLQEALSHYEAAL 512 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al 512 (561)
+....++..+..++
T Consensus 340 --~~~p~~l~~ll~~l 353 (449)
T 1b89_A 340 --EFKPLLLNDLLMVL 353 (449)
T ss_dssp --HHCGGGHHHHHHHH
T ss_pred --hcCHHHHHHHHHHH
Confidence 44556666666666
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=184.20 Aligned_cols=243 Identities=16% Similarity=0.174 Sum_probs=133.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC--
Q 008550 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-- 313 (561)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 313 (561)
.+|..+.++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35566778888888888888888888888888874 45556677777777777777777777777776552
Q ss_pred ------CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 314 ------PSRPEVFVALSVLWER-KDERGALSYAEKSIRID--------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 314 ------~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
|....++..+|.++.. |++++|+.++++++... |....++..+|.++...|++++|+.++++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334455555555555 66666666666555542 22234444555555555555555555555544
Q ss_pred hC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC----
Q 008550 379 LR-----PDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP---- 449 (561)
Q Consensus 379 ~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p---- 449 (561)
.. ++ .|....++..+|.++... |++++|+.+++++++..|
T Consensus 182 ~~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 182 IYQTKLGPD------------------------------DPNVAKTKNNLASCYLKQ-GKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHTSCTT------------------------------CHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC------------------------------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Confidence 40 00 333334444444444444 444444444444443211
Q ss_pred -----CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 450 -----GY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 450 -----~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.. ...+...+..+...+.+.+|...+.++....|.. .++..+|.+|...|++++|..+|++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1222333444445556666666666666655554 66777777777777777777777777776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-20 Score=164.99 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=154.8
Q ss_pred HHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHH----Hhc
Q 008550 224 CCIASNDY-KGGLELFAELLQRFPNNIHILLEMAKVDAIIG--KNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVK 296 (561)
Q Consensus 224 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 296 (561)
.....|.+ ++|+..+.+++..+|++..+|..++.++...| ++++++..+..++..+|++..+|...+.++ ...
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 33444544 47788888888888888888888888777777 777777777777777777777777777776 444
Q ss_pred ---CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh--HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 297 ---CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER--GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 297 ---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
+++++++.++.++++.+|.+..+|...+.+... +.++ +++.++++++..+|.+..+|..++.+....++..
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~--- 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA--- 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC---
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---
Confidence 455566666666666666666666655555555 5555 5555555555555555555555555554444300
Q ss_pred HHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCCh-HHHHHHHHHHHHhC-
Q 008550 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLE- 448 (561)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~- 448 (561)
....++++++++.+++..+|++..+|+.++.++... |+. +.....+.+++.++
T Consensus 198 ------------------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 198 ------------------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGG
T ss_pred ------------------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccC
Confidence 000166677777777777777777777777777666 553 33445555555554
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCh-HHHHHHHH
Q 008550 449 --PGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADD-SLHVKLAQ 493 (561)
Q Consensus 449 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~la~ 493 (561)
|.++.++..++.++.+.|+.++|+++++.+.+ .+|-. ..|...+.
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 66677777777777777777777777777765 56655 55555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-20 Score=176.16 Aligned_cols=298 Identities=15% Similarity=0.069 Sum_probs=228.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH----HhCCHHHHH---------HHHHHHHhhCCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFP---NNIHILLEMAKVDA----IIGKNDEAI---------LNFEKVRSIDPY 281 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~----~~~~~~~A~---------~~~~~~~~~~~~ 281 (561)
.+..-..++..+++++|..+++++.+..+ .+..+.+..+...+ ..+.+..+. ..++++-.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 34445556789999999999998866422 34555533322222 222222222 444443221111
Q ss_pred -C----hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC------CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 282 -I----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------RPEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 282 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
+ ...++..|..+...|++++|+..+++++...+. .+.++..+|.++.. |+++.|+.++++++...+..
T Consensus 95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 1 125677899999999999999999999987432 25689999999999 99999999999999875542
Q ss_pred -------hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC---Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 008550 350 -------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DL----RSYQGLVHSYLQFSKVKEALYAAREAMK---- 411 (561)
Q Consensus 350 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 411 (561)
..++..+|.++...|++++|+..|+++++..+ +. .++.++|.++...|++++|+..+++++.
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999998743 22 3588999999999999999999999999
Q ss_pred -HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC
Q 008550 412 -AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-----YLGAALALAELHVIEGR---NGDAVSLLERYLKDW 482 (561)
Q Consensus 412 -~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~ 482 (561)
.+|..+.++..+|.++... |++++|+.+++++++..+. ....+..++.++...|+ +.+|+.++++.-...
T Consensus 255 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~ 333 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKA-GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHA 333 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChh
Confidence 7788899999999999998 9999999999999998543 34456678888888888 888888888732111
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
....++..+|.+|...|++++|..+|+++++...
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1226888999999999999999999999987643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=169.72 Aligned_cols=204 Identities=12% Similarity=0.093 Sum_probs=132.5
Q ss_pred cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----
Q 008550 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH---IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---- 383 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 383 (561)
..|.++..++.+|..+.. |++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 345556666666666665 66666666666666666665 5566666666666666666666666666665532
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 384 RSYQGLVHSYLQ--------FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 384 ~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
.+++.+|.++.. .|++++|+..|++++..+|+++.+...+..+.... +. ....+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~-~~-----------------~~~~~ 151 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR-AK-----------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH-HH-----------------HHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH-HH-----------------HHHHH
Confidence 346666666666 67777777777777777776654443333222211 11 11235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCccHH-
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAAT----------NMLQEALSHYEAALRINSQNEA- 520 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~- 520 (561)
+.+|.++...|++++|+..|+++++..|++ .+++.+|.+|..+ |++++|+..|+++++.+|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 777888888888888888888888887763 5788888888866 8888899999999998888854
Q ss_pred --HHHHHHHHHHhcc
Q 008550 521 --AKKGLERLEKQMK 533 (561)
Q Consensus 521 --~~~~l~~l~~~~~ 533 (561)
+...+..+...++
T Consensus 232 ~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 232 RTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 4445555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=161.99 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG----------------LVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.++..|..+...|++++|+..|++++..+|++ .+++. +|.++...|++++|+..|+++++.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33444444444444444444444444444444 23444 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCChHHHHHHH
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR--NGDAVSLLERYLKDWADDSLHVKLA 492 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~la 492 (561)
+++.++..+|.++... |++++|+.+|+++++++|+++.++..+|.++...|+ ...+...+.+++...|....++.+|
T Consensus 86 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 9999999999999998 999999999999999999999999999999987764 4556777777765444446788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.++...|++++|+.+|+++++++|++ .+...+.++..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~~ 201 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILR 201 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 99999999999999999999999975 45555666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=179.64 Aligned_cols=351 Identities=11% Similarity=0.054 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (561)
.++..+|.++.+.|++++|+..|.+. .++..+...+..+...|++++|+.+++.+.+..|+ +.+...++.++.+.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHh
Confidence 48999999999999999999999653 46678899999999999999999999988885444 56666777777777
Q ss_pred ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 008550 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (561)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 268 (561)
|++..+.+.... | ....| ...|..+...|.|++|+.+|.++ ..+..+|.++.++|++++|
T Consensus 108 g~l~e~e~f~~~-----p----n~~a~---~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 108 NRLAELEEFING-----P----NNAHI---QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -CHHHHTTTTTC-----C-----------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHcC-----C----cHHHH---HHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHH
Confidence 777665544421 1 11233 33488888888888888888866 3577888888888888888
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC
Q 008550 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (561)
++.++++ .++..|...+.++...|+++.|..+...+. . +|+-...++.+|.. |.+++|+.++++++.+++
T Consensus 168 Vea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 168 VDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp HHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 8888887 467788888888888888888866665422 3 33444457777777 888888888888888888
Q ss_pred CChhHHHHHHHHHHh--cCChhHHHHHHHHhHHhCC-----Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 008550 348 RHIPGYIMKGNLLLS--MKRPEAAVIAFRGAQELRP-----DL-RSYQGLVHSYLQFSKVKEALYAAREAMKA------- 412 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 412 (561)
.+...+..+|.+|.+ .++..+.++.|...+.+.| .. ..|..++.+|...++++.|+...-.....
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f 318 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF 318 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHH
Confidence 888888888777754 3455666666665555554 22 35778888888888888887765543222
Q ss_pred -----CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 413 -----MPQSAKALKLVGDVHASNASGREKAKKFYESAL--RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 413 -----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.+.+.+.++.....|. +....++..+..++ .+++ ......+.+.|+..-...++..+... ...
T Consensus 319 ~~~~~kv~n~elyYkai~fyl---~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l~l~~~yl~~v~~~-n~~ 388 (449)
T 1b89_A 319 KDIITKVANVELYYRAIQFYL---EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQNH-NNK 388 (449)
T ss_dssp HHHHHHCSSTHHHHHHHHHHH---HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHHTT-CCH
T ss_pred HHHHhchhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCcHHHHHHHHHHHHh-hHH
Confidence 3445666666666665 33445566666665 3332 23344556667766666666544432 222
Q ss_pred HHHHHHHHHHHHcCCHHH
Q 008550 486 SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~ 503 (561)
.+.-.+-.+|...++++.
T Consensus 389 ~vnealn~l~ieeed~~~ 406 (449)
T 1b89_A 389 SVNESLNNLFITEEDYQA 406 (449)
T ss_dssp HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 455556666777777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=170.25 Aligned_cols=199 Identities=13% Similarity=0.011 Sum_probs=145.5
Q ss_pred cCHhHHHHHHHHHHhccCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhc
Q 008550 330 KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQF 396 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 396 (561)
|++++|+..|++++.+.+. ...++..+|.+|...|++++|+.+|++++++.|.. .++..+|.+|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5555555555555544321 13456667777777777777777777777665431 2477888888885
Q ss_pred -CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH
Q 008550 397 -SKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-------AALALAELH 462 (561)
Q Consensus 397 -~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~ 462 (561)
|++++|+.+|++++...|.. ..++..+|.++... |++++|+.+|+++++..|++.. ++..+|.++
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 88888888888888887654 46788889999988 9999999999999998877643 567889999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 463 VIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFA--ATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
...|++++|+..|++++++.|+. ..+..++..+. ..+++++|+..|++++.++|.+..++..+.+..
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999888764 23455666664 457899999999999999998877766665544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-20 Score=166.22 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=138.7
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--- 416 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 416 (561)
...|.++..++.+|..++..|++++|+..|+++++..|++ .+++.+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4577888889999999999999999999999999888875 468889999999999999999999999987754
Q ss_pred HHHHHHHHHHHhh--------hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH
Q 008550 417 AKALKLVGDVHAS--------NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 417 ~~~~~~l~~~~~~--------~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (561)
+.+++.+|.++.. . |++++|+..|+++++..|+++.+...+..+....+.. ...+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~----------------~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL----------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH----------------HHHH
Confidence 6678888988888 7 8889999999999998888876654444332221111 1337
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHhc
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQ---NEAAKKGLERLEKQM 532 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~l~~~~ 532 (561)
+.+|.+|...|++++|+..|+++++.+|+ .+.++..++.++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999998 567888888877655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-19 Score=169.00 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHH
Q 008550 143 MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA 222 (561)
Q Consensus 143 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (561)
.++.+|..+...|++++|+..|++++...+..... +.....++..|
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------~~~a~~~~~lg 148 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------------------------------IEKAEFHFKVA 148 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh----------------------------------HHHHHHHHHHH
Confidence 56778999999999999999999999765321100 00111233449
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------ChHHHHHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IMTYMDEY 289 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l 289 (561)
.++...|+++.|+..++++++..+. ...++..+|.++...|++++|+.+|+++++..+. ...++..+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999986432 2457788999999999999999999999886432 12456667
Q ss_pred HHHHHhcCCHhHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC-----ChhHHHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLS-----IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER-----HIPGYIMKGN 358 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~ 358 (561)
|.++...|++++|+.++++++. .+|..+.++..+|.++.. |++++|+.++++++...+. ....+..++.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777777766 455555566666666666 6666666666666655332 1223344455
Q ss_pred HHHhcCC---hhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 359 LLLSMKR---PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 359 ~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
++...++ +.+|+..+++.-........+..+|.+|...|++++|..+|+++++
T Consensus 309 ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555 4444444444110000012344555555555555555555555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-17 Score=167.42 Aligned_cols=403 Identities=12% Similarity=0.054 Sum_probs=295.5
Q ss_pred HHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc---HhHHhhccccc
Q 008550 126 AAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD---IISLFAQTPNR 201 (561)
Q Consensus 126 ~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~ 201 (561)
+-+..++. +..+|.+...|..+.......+.++.+..+|++++...|.....|...+......+. ...+.....+.
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 33444444 566789999999999999999999999999999999999999999988887766666 66665555555
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHccCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------
Q 008550 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDY--------KGGLELFAELLQR----FPNNIHILLEMAKVDA--------- 260 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~A~~~~~~~~~~----~~~~~~~~~~la~~~~--------- 260 (561)
....+. ......|..+ .......++. +.....|++++.. ++.+..+|........
T Consensus 130 l~~~~~-~~sv~LW~~Y---l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 130 LSKELG-NNDLSLWLSY---ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp TCSSSC-CCCHHHHHHH---HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHhcCC-CCCHHHHHHH---HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 554431 1345566655 2223333433 3344788888864 6667778877766543
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC-------------CHhHHHHHHHHH------Hhc-CCCC---
Q 008550 261 IIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC-------------DYSKLSKLVHDL------LSI-DPSR--- 316 (561)
Q Consensus 261 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-------------~~~~A~~~~~~~------~~~-~~~~--- 316 (561)
..++.+.+..+|++++.+..... ..|..+...-...+ +|..|...+... +.. .|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34567889999999997533332 34433333222211 233344444332 111 1211
Q ss_pred ----------------HHHHHHHHHHHHh-c-------CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH-H
Q 008550 317 ----------------PEVFVALSVLWER-K-------DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV-I 371 (561)
Q Consensus 317 ----------------~~~~~~l~~~~~~-~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~ 371 (561)
...|......-.. + ........|++++...|..+..|+..+..+...|+.++|. .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1244444333322 1 1234567899999999999999999999999999999997 9
Q ss_pred HHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------CC-----------CHHHHHHHHHHHh
Q 008550 372 AFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAM-----------PQ-----------SAKALKLVGDVHA 428 (561)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~l~~~~~ 428 (561)
.|++++...|.+. .|...+......|++++|..+|++++... |. ...+|...+....
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9999999999875 48889999999999999999999998752 53 3457888888888
Q ss_pred hhcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 429 SNASGREKAKKFYESALRL-EPGYLGAALALAELHVIEGR-NGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
.. |+.+.|...|.+|++. .+....++...|.+....|+ ++.|.++|+.+++..|++ ..|...+......|+.+.|.
T Consensus 446 R~-~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RI-QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HH-HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 87 9999999999999987 44556778888888877765 899999999999999977 77889999999999999999
Q ss_pred HHHHHHHhcCC---ccHHHHHHHHHHHHhcc
Q 008550 506 SHYEAALRINS---QNEAAKKGLERLEKQMK 533 (561)
Q Consensus 506 ~~~~~al~~~p---~~~~~~~~l~~l~~~~~ 533 (561)
.+|++++...| ....+|.....+....|
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999988 57788888888888776
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-19 Score=169.47 Aligned_cols=293 Identities=13% Similarity=0.024 Sum_probs=176.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYM 286 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 286 (561)
....|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|...+++++...|... .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45567788888888888888888888766442 2566778888888888888888888887655432 235
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC-----hhH
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSID--------PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH-----IPG 352 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~~~ 352 (561)
..+|.++...|++++|+..+++++... |....++..+|.++.. |++++|..++++++...+.. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667777777777777777777776643 1223455566666666 77777777777776665532 234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCC--h-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHHHCCCC----HHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L-RSYQ-----GLVHSYLQFSKVKEALYAAREAMKAMPQS----AKAL 420 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~ 420 (561)
+..+|.++...|++++|...+++++...+. . ..+. .++.++...|++++|...+++++...|.. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 556666666666666666666666655221 1 1111 23344556666666666666665544432 2234
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQV 494 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~ 494 (561)
..++.++... |++++|...+++++...+.. ..++..+|.++...|++++|...+++++...+... ....
T Consensus 257 ~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----~~~~ 331 (373)
T 1hz4_A 257 RNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----FISH 331 (373)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----CCHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc----HHHH
Confidence 5556666665 66666666666665543211 12455556666666666666666666665543321 1112
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCc
Q 008550 495 FAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+...| +.....+++.+...|-
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHcc--HHHHHHHHHHHhCCCC
Confidence 22222 4455555666665554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-19 Score=168.09 Aligned_cols=268 Identities=14% Similarity=0.050 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH-----HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH------
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-----YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------ 317 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 317 (561)
..++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|...+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 467788999999999999999999999998876532 577889999999999999999999998765442
Q ss_pred HHHHHHHHHHHh-cCHhHHHHHHHHHHhccC--------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----
Q 008550 318 EVFVALSVLWER-KDERGALSYAEKSIRIDE--------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----- 383 (561)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 383 (561)
.++..+|.++.. |++++|+..+++++...+ ....++..+|.++...|++++|...+++++...+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346788999988 999999999999998752 234567889999999999999999999999987652
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC--CHHHHH-----HHHHHHhhhcCChHHHHHHHHHHHHhCCCC----
Q 008550 384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALK-----LVGDVHASNASGREKAKKFYESALRLEPGY---- 451 (561)
Q Consensus 384 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---- 451 (561)
.++..+|.++...|++++|...+++++...+. .+..+. ..+.++... |++++|...+++++...|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-GDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-CCHHHHHHHHHhCCCCCCCcchhh
Confidence 35788999999999999999999999886432 211221 344557777 99999999999998877653
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-----D--SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
...+..++.++...|++++|...+++++...+. . .++..+|.++...|++++|...+++++.+.+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 235678999999999999999999999876532 1 57888999999999999999999999987653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-20 Score=187.47 Aligned_cols=186 Identities=10% Similarity=-0.076 Sum_probs=165.3
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------hhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 008550 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR--------SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (561)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..++++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34778888777766 77899999999999999 88899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHH
Q 008550 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (561)
+++.+|+.+|.++.. |++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|++ .+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 999999999999998 999999999999999999999999999999999999999 99999999999987 668999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
+...|++++|+..|+++++.+|++..++..+|.++... ++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~-~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG-RS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc-CC
Confidence 99999999999999999999999999999999998765 55
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=187.72 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=165.2
Q ss_pred hcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHH--------hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 311 SIDPSRPEVFVALSVLWER-KDERGALSYAEKSI--------RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
..+|+++.+++..+ .. |++++|+..+++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888777766 44 99999999999999 88899999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
++ .+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++ +..|+++++++|+++.+++++|.
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 87 67999999999999999999999999999999999999999999998 99999 99999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
++...|++++|+..|+++++.+|+. .++..+|.++...|+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999987 889999999877665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=157.42 Aligned_cols=171 Identities=11% Similarity=0.058 Sum_probs=121.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE----------------MAKVDAIIGKNDEAILNFEKVRSIDPY 281 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (561)
.+..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3455888888888888888888888888888888888 777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++.. | +...+...+.+++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 777777777777777777777777777777777777777777777654 3 334555666665432221 234566677
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCChHHHHHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGL 389 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 389 (561)
++...|++++|+..|+++++++|+..+...+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777777777777777766443333
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=166.54 Aligned_cols=239 Identities=10% Similarity=0.011 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 233 GGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
+|.+++.++-+.-+.....+ .++.. +++++|+..|.++ |.++...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655432222 11122 1477788777776 45677788888888888888
Q ss_pred HhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhc-CChhHHHHHHHH
Q 008550 310 LSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSM-KRPEAAVIAFRG 375 (561)
Q Consensus 310 ~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~ 375 (561)
+.+.+.. +.++..+|.++.. |++++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 7764321 4578888888888 88888888888888877653 35788899999996 999999999999
Q ss_pred hHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHhhhcCChHHHHHHH
Q 008550 376 AQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK-------ALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 376 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
++++.|.. .++..+|.++...|++++|+..|++++...|++.. ++..+|.++... |++++|+.+|
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~ 222 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTL 222 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 99986642 35788999999999999999999999999887643 678899999998 9999999999
Q ss_pred HHHHHhCCCCHHH-----HHHHHHHHH--HcCChHHHHHHHHHHHhhCCCh-HHHHHH
Q 008550 442 ESALRLEPGYLGA-----ALALAELHV--IEGRNGDAVSLLERYLKDWADD-SLHVKL 491 (561)
Q Consensus 442 ~~a~~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~-~~~~~l 491 (561)
+++++++|+.... +..++..+. ..+++++|+..|++++.++|.. .++..+
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 9999999886553 344555554 4577999999999988888765 343333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=150.18 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=88.2
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
||.++.. |++++|+..+++++...|.++..++.+|.+|...|++++|+..|+++++++|++ .+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 4555555 666666666666666666666666666666666666666666666666666665 44666666666666666
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF-YESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
+|+..|+++++.+|+++.++..+|.++... |++++|... ++++++++|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666666666666666666666666665 666554443 366666666666666666666655553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=151.49 Aligned_cols=144 Identities=11% Similarity=0.042 Sum_probs=125.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 66677788899999999999888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHH-HHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSY-AEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
|+..|+++++++|+++.++..+|.++.. |++++|... ++++++++|+++.++..++.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999998888 888876665 588999999999998888888887775
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-17 Score=149.82 Aligned_cols=241 Identities=12% Similarity=0.047 Sum_probs=149.7
Q ss_pred HHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 226 IASNDYK-GGLELFAELLQRFPNNIHILLEMAKVDAIIGK----------NDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 226 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
...|.++ +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456655 67888888888888888888888877776655 567777777777777777777777777777
Q ss_pred hcCC--HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC-HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 295 VKCD--YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD-ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 295 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
..+. +++++.++.++++.+|.+..+|...+.+... |. +++++.++.+++..+|.+..+|..++.++...+....+-
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 7663 6677777777777777777777777776666 65 467777777777777777777777766665552210000
Q ss_pred HHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC----------ChHHHHHH
Q 008550 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----------GREKAKKF 440 (561)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~~A~~~ 440 (561)
+. + -...+.++++++++.+++..+|++..+|+.+..++....| .+++++++
T Consensus 200 ----------~~-------~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 200 ----------PQ-------G--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred ----------cc-------c--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 00 0 0000335566666666666666666666544444333212 24666777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhCCCh
Q 008550 441 YESALRLEPGYLGAALALAELHV---IEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 441 ~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+.++++..|++...+..++.+.. ..|..++...++.++++++|..
T Consensus 261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 77777777766544444433322 2455666677777777777655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=148.55 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH
Confidence 33333344444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (561)
|+..+++++...|.++.++..+|.++.. |++++|+.++++++...|
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4444444444444444444444444433 444444444444444333
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=148.32 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=127.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++..|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 34457777777888888888887777777777777778888888888888888888887777777777777777777777
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++++|...+++++...|.++.++..+|.++.. |++++|+.++++++...|.++.++..+|.++...|++++|+..++++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777 77777777777777777777777777777777777777777777777
Q ss_pred HHhCCCh
Q 008550 377 QELRPDL 383 (561)
Q Consensus 377 ~~~~~~~ 383 (561)
++..|++
T Consensus 171 ~~~~~~~ 177 (186)
T 3as5_A 171 NELDEGA 177 (186)
T ss_dssp HHHHHCC
T ss_pred HHcCCCc
Confidence 7766554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-17 Score=145.49 Aligned_cols=226 Identities=10% Similarity=0.025 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC----------HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC--hh
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KD----------ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR--PE 367 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 367 (561)
+|+..+.+++..+|++..+|...+.++.. +. +++++.+++.++..+|++..+|...+.++...++ ++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 45555555555555555555555555444 32 5677888888888888888888888888877774 77
Q ss_pred HHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc-------------C
Q 008550 368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK-VKEALYAAREAMKAMPQSAKALKLVGDVHASNA-------------S 432 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-------------~ 432 (561)
+++.++.++++.+|.+ .+|...+.+....|. +++++.++.++++.+|.+..+|..++.++.... +
T Consensus 128 ~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~ 207 (331)
T 3dss_A 128 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 207 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchH
Confidence 8888888888888876 668888888888787 588888888888888888888888888877651 3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCChHHHHHHHHHHH-----
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIE-----------GRNGDAVSLLERYLKDWADDSLHVKLAQVFA----- 496 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~----- 496 (561)
.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++ .|..++.+..
T Consensus 208 ~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~ 286 (331)
T 3dss_A 208 VLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALD 286 (331)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhc
Confidence 478999999999999999999998777776665 45789999999999999987 2333333322
Q ss_pred HcCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 008550 497 ATNMLQEALSHYEAALRINSQNEAAKKGLER 527 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 527 (561)
..|..++...++.+.+++||-...-|..+..
T Consensus 287 ~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 287 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp TTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3578899999999999999998888777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=149.99 Aligned_cols=187 Identities=13% Similarity=-0.018 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh---hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH----HHH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI---PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR----SYQ 387 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 387 (561)
++..++.+|..+.. |++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++..|++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46677888888887 888888888888888887764 5788888888888888888888888888888762 577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH------------
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA------------ 455 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~------------ 455 (561)
.+|.++...|.. ....+..++..+... |++++|+..|+++++..|+++.+.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDP-QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------CC-HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCc-HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 788877764311 001122223333333 555555555555555555554332
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 456 -----LALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 456 -----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
..+|.++...|++++|+..|+++++..|++ .++..+|.++..+|++++|++.++++....|++.
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 578999999999999999999999999875 6899999999999999999999999999888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=159.23 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC------
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRID--------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR------ 380 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 380 (561)
.+.++..+|.++.. |++++|+.++++++... |....++..+|.++...|++++|+..+++++...
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34555666666666 66666666666666542 3344566667777777777777777777766652
Q ss_pred --CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh--
Q 008550 381 --PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQSAKALKLVGDVHASNASGREKAKKFYESALRL-- 447 (561)
Q Consensus 381 --~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-- 447 (561)
|.. .++..+|.++...|++++|+..+++++.. .|....++..+|.++... |++++|+.+++++++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 222 34667777777777777777777777776 555566777777777777 7777777777777765
Q ss_pred -------CCCCHHHHHHHHHHHHHcCChHHHHH------HHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 448 -------EPGYLGAALALAELHVIEGRNGDAVS------LLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 448 -------~p~~~~~~~~la~~~~~~g~~~~A~~------~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
.+.....+..++......+....+.. .++......|.. .++..+|.++...|++++|..+|+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444566666666665554433332 222221122222 6778888888888888888888888877
Q ss_pred cC
Q 008550 514 IN 515 (561)
Q Consensus 514 ~~ 515 (561)
..
T Consensus 281 ~~ 282 (283)
T 3edt_B 281 NR 282 (283)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=149.15 Aligned_cols=252 Identities=13% Similarity=0.039 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
.++..+..+....+..++|+..+.+++.++|++..+|...+.++...| .+++++..+..++..+|++..+|...+.++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444444444444455566777777777777777777777777777776 3777777777777777777777777666665
Q ss_pred h--c-CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 329 R--K-DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 329 ~--~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
. + ++++++.++.+++..+|++..+|..++.+....|.++.+ . ...+.+++++
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~-------------~------------~~~~~eELe~ 189 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI-------------S------------EAQWGSELDW 189 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC-------------C------------HHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc-------------c------------hhhHHHHHHH
Confidence 5 4 566666666777666666666666666666665555400 0 0001145555
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCC-------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASG-------REKAKKFYESALRLEPGYLGAALALAELHVIEGRN---------- 468 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~-------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~---------- 468 (561)
+.++++.+|.|..+|..++.++... +. ++++++++.+++..+|++..+|..+..++...|+.
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l-~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSR-PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTS-TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 5555555555555555555555544 33 35555555555555555555555555555554443
Q ss_pred ----------HHHHHHHHHHHhhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCccHHHHHHHHH
Q 008550 469 ----------GDAVSLLERYLKDW-------ADDSLHVKLAQVFAATNMLQEALSHYEAAL-RINSQNEAAKKGLER 527 (561)
Q Consensus 469 ----------~~A~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~ 527 (561)
..-......++... +.+.++..++.+|...|+.++|.++|+... +.+|-...-|....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 11111111111111 122567777777777777778888777775 567776666655544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=146.73 Aligned_cols=183 Identities=13% Similarity=0.015 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH---HHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---YMDEYA 290 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~ 290 (561)
..+..|..++..|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|+++++.+|+++. +++.+|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34566999999999999999999999998876 478999999999999999999999999999999864 788889
Q ss_pred HHHHhc------------------CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChh
Q 008550 291 MLLKVK------------------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP 351 (561)
Q Consensus 291 ~~~~~~------------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 351 (561)
.++... |++++|+..|+++++.+|+++.++..+..+... +. ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------~~~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-----------------LAK 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------HHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------HHH
Confidence 888764 455666666666666666555443322211111 00 011
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (561)
....+|.++...|++++|+..|+++++..|++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 23578999999999999999999999999886 468899999999999999999999998888865
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=161.04 Aligned_cols=225 Identities=17% Similarity=0.159 Sum_probs=132.4
Q ss_pred HHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCChHHHHHH
Q 008550 226 IASNDYKGGLELFAELLQR--------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYIMTYMDEY 289 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l 289 (561)
...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..++++++.. |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888888873 24456777888888888888888888888887662 3344566666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSID-----PSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
|.++...|++++|+.++++++... ++ +|....++..+|.++...|
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKF------------------------------HPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCC------------------------------ChHHHHHHHHHHHHHHHcC
Confidence 666666666666666666665541 11 1223344445555555555
Q ss_pred ChhHHHHHHHHhHHh--------CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQEL--------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA---------MPQSAKALKLVGDV 426 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~ 426 (561)
++++|+..+++++.. .|.. .++..+|.++...|++++|+..+++++.. .+.....+..++..
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555555555544 2222 23555566666666666666666655554 33344455555555
Q ss_pred HhhhcCCh------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 427 HASNASGR------EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 427 ~~~~~~~~------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
.... +.. ..+...++......|..+.++..+|.++...|++++|+.+++++++.
T Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EESK-DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTT-CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4443 332 23333333322233445567778888888888888888888888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=136.36 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=103.5
Q ss_pred HHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHH
Q 008550 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLH 488 (561)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 488 (561)
..++|+.+..+..+|..+... |++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|+. .++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKK-GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 346787888888888888887 889999999999988888888888889999999999999999999998888877 788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
+.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999988887763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=144.99 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=108.6
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (561)
|.....++.+|..+...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 3444556666666666677777777777666666665 4566666777677777777777776666666 6655554443
Q ss_pred HHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHH
Q 008550 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~ 502 (561)
+.....+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|+. .++..+|.++...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 322111333456777777777777777777777777777777777777777777777653 46777777777777777
Q ss_pred HHHHHHHHHHh
Q 008550 503 EALSHYEAALR 513 (561)
Q Consensus 503 ~A~~~~~~al~ 513 (561)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=144.97 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHH
Q 008550 142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221 (561)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (561)
.++..+..+....+..++|+..+.+++..+|.+..+|...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R---------------------------------------- 94 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYR---------------------------------------- 94 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHH----------------------------------------
Confidence 3344444445555666788888888888888888888665
Q ss_pred HHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 222 AQCCIASN-DYKGGLELFAELLQRFPNNIHILLEMAKVDAII-G-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 222 a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+.++...| .+++++..+.+++..+|++..+|..++.++... + ++++++.++.++++.+|.+..+|...+.++...|.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 55555566 588888888888888888888888888888887 7 78888888888888888888888888888888777
Q ss_pred Hh--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC-------HhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 299 YS--------KLSKLVHDLLSIDPSRPEVFVALSVLWER-KD-------ERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 299 ~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
++ +++++++++++.+|.+..+|...+.++.. ++ ++++++++++++..+|.+..+|..+..++..
T Consensus 175 ~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 175 LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 77 78888888888888888888888887777 65 5778888888888888888888777777766
Q ss_pred cCCh
Q 008550 363 MKRP 366 (561)
Q Consensus 363 ~~~~ 366 (561)
.|+.
T Consensus 255 ~~~~ 258 (349)
T 3q7a_A 255 FSLP 258 (349)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=144.09 Aligned_cols=159 Identities=9% Similarity=-0.044 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Q 008550 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (561)
.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555555555555555555555555555 44443333322211
Q ss_pred -cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHHH
Q 008550 330 -KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
++..+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. .++..++.++...|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 223344555555555555555555555555555555555555555555555542 2455555555555555555555
Q ss_pred HHHHH
Q 008550 406 AREAM 410 (561)
Q Consensus 406 ~~~~~ 410 (561)
|++++
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=156.55 Aligned_cols=188 Identities=9% Similarity=0.026 Sum_probs=125.3
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC---h----HHHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---L----RSYQGLVH 391 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~----~~~~~l~~ 391 (561)
++.. |++++|+..|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++++.+. . .++..+|.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334 55555555555555443321 235566677777777777777777777766322 1 34677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALA 459 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la 459 (561)
+|.. |++++|+.+|++++...|.. ..++..+|.++... |++++|+.+|++++.+.|.+ ..++..+|
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 8877 88888888888888776543 56778888888887 88888888888888875543 23667788
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCc
Q 008550 460 ELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFAATNMLQEALSH--YEAALRINSQ 517 (561)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 517 (561)
.++...|++++|+..|++++ ..|.. .....++..+ ..|+.+.+... |..+..++|.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~~ 266 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDND 266 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhHH
Confidence 88888899999999999988 77743 2445555555 56666554442 3444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=131.34 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=72.6
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
.++|+....+..+|..++..|++++|+..|+++++.+|.+ .+|..+|.++..+|++++|+..++++++.+|+++.+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3455555666666666666666666666666666666655 345666666666666666666666666666666666666
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
+|.++... |++++|+..|+++++++|+++.++..++.+
T Consensus 87 lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAM-REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666665 666666666666666666666666555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=145.99 Aligned_cols=168 Identities=7% Similarity=-0.060 Sum_probs=151.4
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
..|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999666666666
Q ss_pred HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCH
Q 008550 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKV 399 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 399 (561)
+..+.. ++.+.|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ .++..++.++...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 666666 888899999999999999999999999999999999999999999999999886 3588899999999999
Q ss_pred HHHHHHHHHHHH
Q 008550 400 KEALYAAREAMK 411 (561)
Q Consensus 400 ~~A~~~~~~~~~ 411 (561)
++|...|++++.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998888765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-17 Score=146.49 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVH 391 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~ 391 (561)
|.+++.+..+|..+.. |++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+... ....+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 6666667777776666 77777777777777777777777777777777777777777777777777775532 444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChH
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVIEGRNG 469 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~ 469 (561)
.+...++.++|+..+++++..+|+++.+++.+|.++... |++++|+..|.++++.+|++ ..++..++.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 566666666677777777777777777777777777776 77777777777777777766 566677777777777777
Q ss_pred HHHHHHHHHHh
Q 008550 470 DAVSLLERYLK 480 (561)
Q Consensus 470 ~A~~~~~~~~~ 480 (561)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77776666653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=136.11 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=75.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+++++..+|+++.+++.+|.++... |++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 4445556666666666666666666 666666666666666666666666666666666666666666666666666655
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 486 -SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 486 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
.+++.+|.++..+|++++|+.+|++++++.|+.+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 6666666666666666666666666666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-17 Score=148.15 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=174.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI-IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
..|++.+|..+++++.+..+.. ++. .+++++|...|.++ +.++...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4588899999999998876642 111 57888888888876 5678888999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhHHHHH
Q 008550 306 VHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 306 ~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 372 (561)
|.+++...+.. ..++..+|.++.. |++++|+.+|++++.+.+.. ..++..+|.+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99988875433 4578889999998 99999999999999875432 3578899999999 999999999
Q ss_pred HHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHH
Q 008550 373 FRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKK 439 (561)
Q Consensus 373 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~ 439 (561)
|++++.+.|.. .++..+|.++...|++++|+..|++++...|.+ ..++..+|.++... |++++|+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99999986532 358899999999999999999999999986644 34778899999998 99999999
Q ss_pred HHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHH
Q 008550 440 FYESALRLEPGYLG-----AALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 440 ~~~~a~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 473 (561)
+|++++ .+|.... ....++..+ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 9987643 233445444 5666554444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-16 Score=134.04 Aligned_cols=187 Identities=12% Similarity=0.013 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 008550 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS----KVKEALYAAREA 409 (561)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~ 409 (561)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+.. +..+++.+|.+|.. + ++++|+.+|+++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 566777777754 567788888888888888888888888877652 33667788888877 6 788888888888
Q ss_pred HHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 008550 410 MKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRLEP--GYLGAALALAELHVI----EGRNGDAVSLLERYL 479 (561)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~ 479 (561)
.+ +.++.+++.+|.++.. . +++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++.
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 5678888888888886 5 788999999999888877 347888899999988 788999999999998
Q ss_pred hhCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 480 KDWADDSLHVKLAQVFAAT-N-----MLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 480 ~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
+..++...++.+|.+|..- | ++++|+.+|+++.+.. ++.+...+..+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~ 210 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS 210 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence 8844557888899988764 3 8999999999998874 566666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=143.39 Aligned_cols=221 Identities=12% Similarity=-0.010 Sum_probs=120.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH-HH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-------AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE-YA 290 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~ 290 (561)
|-.|.-+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+++.+.+.|....+++. .|
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3334433 35555555555555555555555555555 455555555555555555555555554332222 00
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (561)
. | |+ +... -...++...++.++.. |++++|.+.|..++...|.+. ..+.+|.++.+.+++++
T Consensus 90 ~-y---~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~d 153 (282)
T 4f3v_A 90 L-Y---GD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTD 153 (282)
T ss_dssp T-T---CC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHH
T ss_pred c-c---cc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHH
Confidence 0 0 00 0000 0001233445555555 666666666666666666555 66666666666666666
Q ss_pred HHHHHHHhHHhCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHhhhcCChHHHHHHHH
Q 008550 369 AVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEALYAAREAMKAM--PQ-SAKALKLVGDVHASNASGREKAKKFYE 442 (561)
Q Consensus 369 A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (561)
|+..|+.+....+. ..+++.+|.++..+|++++|+..|++++... |. .+.+++.+|.++..+ |+.++|...|+
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 66666655443211 1346666666666666666666666665332 33 445666666666666 67777777777
Q ss_pred HHHHhCCCCHHHHHHH
Q 008550 443 SALRLEPGYLGAALAL 458 (561)
Q Consensus 443 ~a~~~~p~~~~~~~~l 458 (561)
+++..+|+ +.+...|
T Consensus 233 ~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 233 WLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHSCC-HHHHHHH
T ss_pred HHHhcCCc-HHHHHHH
Confidence 77666666 5555444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=131.65 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=95.7
Q ss_pred HHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
.+++++.++|++ .+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++... |++++|+.+|+++++++|+
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCCC
Confidence 355566677776 56888888888888888888888888888888888888888888887 8888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (561)
++.+++.+|.++..+|++++|+..|+++++..|++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888888888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=160.07 Aligned_cols=163 Identities=10% Similarity=0.052 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 008550 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (561)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc---CChhHHHHHHHHhHHhCCCh
Q 008550 308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM---KRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~ 383 (561)
++++.+|+++.++..+|.++.. |++++|+..++++++.+|++..++..+|.++... |++++|...++++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 9999999999999999999999999999999999 99999999999999998886
Q ss_pred -HHHHHHH
Q 008550 384 -RSYQGLV 390 (561)
Q Consensus 384 -~~~~~l~ 390 (561)
..+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 4454444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-17 Score=141.08 Aligned_cols=201 Identities=9% Similarity=-0.012 Sum_probs=108.8
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHH----HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH--------
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYV----EAQCCIASNDYKGGLELFAELLQRFPNNIHILLE-------- 254 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 254 (561)
..++...+...+.+.....| .....|..+.. .+.++...+++.+++..+++.+...|.....++.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 55556666665555554443 23444443311 1456667777888888888888887776443333
Q ss_pred -------------HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH
Q 008550 255 -------------MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321 (561)
Q Consensus 255 -------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (561)
++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+.+....+...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~---- 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL---- 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc----
Confidence 55555666666666666665555555555 555555555555555555555554433211100
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--CC-h-HHHHHHHHHHHhcC
Q 008550 322 ALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PD-L-RSYQGLVHSYLQFS 397 (561)
Q Consensus 322 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~-~~~~~l~~~~~~~~ 397 (561)
...+++.+|.++..+|++++|+..|+++.... |. . .+++.+|.++..+|
T Consensus 170 ---------------------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 170 ---------------------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred ---------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 01244555555555555555555555554322 32 2 34555555555556
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLV 423 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (561)
+.++|...|++++..+|+ ..+...+
T Consensus 223 r~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666555555 4444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=160.81 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=127.4
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999998887 5688899999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCCCh
Q 008550 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE---GRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~ 485 (561)
+++.+|+++.++..+|.++... |++++|+..|+++++.+|+++.++..+|.++... |++++|...++++++..|..
T Consensus 83 al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999988 9999999999999999999989999999999999 89999999999999988876
Q ss_pred -HHHHHHH
Q 008550 486 -SLHVKLA 492 (561)
Q Consensus 486 -~~~~~la 492 (561)
..+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 5555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-18 Score=158.57 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=143.3
Q ss_pred cCHhHHHHHHHH----HHhccCCChhHHHHHHHHHH------------hcCChhHHHHHHHHhHHhCCCh-HHHHHHHHH
Q 008550 330 KDERGALSYAEK----SIRIDERHIPGYIMKGNLLL------------SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (561)
Q Consensus 330 ~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (561)
+.+++|+..+.. ++.+.|.. ++...|.... .++++++|+..+++++...|.. .++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 345555555555 55555554 3333333221 4566777777777777777765 567888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
+...|++++|+..|++++...|++ ..++.++|.++... |++++|+.+|+++++++|+++.+++.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 888888888888888888888887 68889999999988 99999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCC
Q 008550 458 LAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEA-LSHYEAALRINS 516 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 516 (561)
+|.++..+|++++|+..|+++++..|++ .++..++.++...|++++| ...|++++...+
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998877 7888999999999999888 567777766533
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-15 Score=129.61 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK----DERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
+.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|..+ ++++|+.+|+++. .+.++.+++.+|.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAV--EAGSKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 333333333333334444444444333332 2334444444444332 4444444444443 2334445555555
Q ss_pred HHHh----cCChhHHHHHHHHhHHhCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 359 LLLS----MKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 359 ~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
+|.. .+++++|+.+|+++.+..|. ..+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 5544 45555555555555555443 2345555555555 45555555555555554 44444555555555
Q ss_pred hhhcC-----ChHHHHHHHHHHHHh
Q 008550 428 ASNAS-----GREKAKKFYESALRL 447 (561)
Q Consensus 428 ~~~~~-----~~~~A~~~~~~a~~~ 447 (561)
....| ++++|+.+|+++.+.
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 43212 455555555555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-17 Score=130.57 Aligned_cols=126 Identities=12% Similarity=-0.040 Sum_probs=92.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
..|++++..+|++...++.+|.++... |++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 346666777777777777777777776 7777777777777777777777777777777777777777777777777777
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
++ .+++.+|.++...|++++|+.+|+++++++|+++.......++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 66 777777788888888888888888888777766555444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-18 Score=156.32 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=129.2
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----------------HHHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSY 393 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~ 393 (561)
+++++|+..+++++...|....++..+|.++...|++++|+..|++++...|.+ .++.++|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777777777777777777777777777777765 5689999999
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-H
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-V 472 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A-~ 472 (561)
...|++++|+..|++++..+|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...|++++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHh
Q 008550 473 SLLERYLK 480 (561)
Q Consensus 473 ~~~~~~~~ 480 (561)
..|++++.
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-15 Score=133.29 Aligned_cols=243 Identities=15% Similarity=0.084 Sum_probs=162.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
..-.+..|+|..++.-.. +..|.+ ....+.+.++|+.+|++.... ..+....+...++..+. +.
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc--
Confidence 666778899998888433 333433 355666778888888877421 11112223344444332 22
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
|+..+++.+...+.+...+..+|.++.. |++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777887777665666666778888877 888888888888877776 667777888888888888888888888887
Q ss_pred HhCCC-----hHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 378 ELRPD-----LRSYQGLVHS--YLQFS--KVKEALYAAREAMKAMPQ--SAKALKLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 378 ~~~~~-----~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
+.+|+ +.....++.. ....| ++.+|..+|+++....|+ .+..+++ ++..+ |++++|...++.+++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~-g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ-RNIAEAQGIVELLLS 239 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH-TCHHHHHHHHHHHHS
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc-CCHHHHHHHHHHHHH
Confidence 77772 4444444333 44445 777888888887777665 2233333 66666 788888887776666
Q ss_pred h----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 008550 447 L----------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (561)
Q Consensus 447 ~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (561)
. +|+++.++.+++.+....|+ +|.++++++.+..|++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 36677777777777777776 67777777777777663
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-15 Score=118.47 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
+++.+|.++...|++++|+..+++++...|.++..+..+|.++... |++++|+..+++++...|.++.++..+|.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777777776 777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 465 EGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.|++++|+..+++++...|.. .++..+|.++...|++++|...+++++..+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777888877777777777655 67777788888888888888888888777775
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=141.55 Aligned_cols=195 Identities=14% Similarity=0.043 Sum_probs=100.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
+...+..+|..+...|++++|+..|++++..+|.+..++..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------- 44 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-------------------------------------- 44 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH--------------------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH--------------------------------------
Confidence 445556666666666666666666666666666655555444
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...+........ ..
T Consensus 45 --a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~ 119 (281)
T 2c2l_A 45 --ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RI 119 (281)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HH
T ss_pred --HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HH
Confidence 5555566666666666666666666666666666666666666666666666666665544222111111111 11
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-KRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 378 (561)
.++...........|.++.+...++.+. .|++++|++.++++++.+|.+......++.++... +.+++|...|.++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~l~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 120 AKKKRWNSIEERRIHQESELHSYLTRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHHHHHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1112222222234444444444444432 25555555555555555555444444444444333 444555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=127.83 Aligned_cols=118 Identities=12% Similarity=-0.017 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 008550 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS 315 (561)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 315 (561)
..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777777777777888888888888888888888888888888777888888888888888888888888777777
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY 353 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 353 (561)
++.+++.+|.++.. |++++|+..|++++++.|.++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 77777777777777 777777777777777777766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-14 Score=126.67 Aligned_cols=249 Identities=10% Similarity=0.025 Sum_probs=190.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHH
Q 008550 257 KVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGA 335 (561)
Q Consensus 257 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 335 (561)
+-.+..|+|..++... -+..|.+. .......+++..+|++.... . .+....+...++..+. ++ |
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~-~~---a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD-TK---N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT-TT---C
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc-cc---H
Confidence 3456789999999844 34455543 45566778888899887421 1 1112223444444332 22 8
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC--Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 336 LSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP--DL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
+..+++.+...+.....+..+|.++...|++++|+.++.+.+..+| .. +++..++.++...|+.+.|.+.++++.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8999998887666677788999999999999999999999988887 44 67889999999999999999999999999
Q ss_pred CCC------CHHHHHHHHHHHhhhcC--ChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 008550 413 MPQ------SAKALKLVGDVHASNAS--GREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKD- 481 (561)
Q Consensus 413 ~p~------~~~~~~~l~~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 481 (561)
+|+ .......-+++.... | ++.+|...|+++....|+ .+..+++ ++..+|++++|...++.+++.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~-g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFAT-NKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH-TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred CccccccchHHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 983 233333345556655 5 899999999999888886 2334343 899999999999999988876
Q ss_pred ---------CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 482 ---------WADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 482 ---------~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
.|++ .++.+++.+...+|+ +|.++++++.+.+|+++.+.....
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 3656 788899999999998 899999999999999998765443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=140.72 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
|.++..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 326 LWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
++.. |++++|+..|++++.++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 6666 66666666666666666544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=125.94 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
|++++..+|++...++.+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3444444555555555555555554 555555555555555555555555555555555555555555555555555544
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 486 -SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 486 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
.+++.+|.++...|++++|+.+|+++++++|+++.......
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 45555555555555555555555555555555444433333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=116.03 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K 330 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 330 (561)
++.+|.++...|++++|+..++++++.+|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++.. |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444444 4
Q ss_pred CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 444444444444444444444444444444444444444444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-12 Score=126.49 Aligned_cols=346 Identities=10% Similarity=-0.000 Sum_probs=231.7
Q ss_pred CCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCC-hhhHHHHHHHHHhc---CCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 122 GETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRH---CPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 122 ~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
|+++.+..+|++. ...| +.+.|........+.+. .+.....|+.++.. +|.+...|...+........
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~------ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED------ 100 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS------
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh------
Confidence 7789999999984 4345 77888887777776663 46677888988864 67788888877665432110
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH-------------HHh
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHI-LLEMAKVD-------------AII 262 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~-------------~~~ 262 (561)
.+|+.+.+..+|++++...+.+..- |......- ...
T Consensus 101 ------------------------------~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 101 ------------------------------EQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------------------------------hhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 1244555666666666532222211 11111110 111
Q ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhcC--C-----HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh
Q 008550 263 GKNDEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKC--D-----YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER 333 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 333 (561)
+.+..|...++.+....+. +...|..+...-...+ - ......+|++++...|..+.+|...+..+.. |+.+
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 2334445555554443222 3345555444432211 0 3456778999999999999999999998888 9999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--------C-C-h-HHHHHHHHHHHhcCCHHHH
Q 008550 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--------P-D-L-RSYQGLVHSYLQFSKVKEA 402 (561)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~-~-~-~~~~~l~~~~~~~~~~~~A 402 (561)
+|...|++++.. |.+...+...+... .. ++....+....... + . . ..|...+....+.+..+.|
T Consensus 231 ~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 231 KAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999 98877776554431 11 11111111111000 1 1 1 3477788888888899999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
..+|.++ ...+.....|...+.+-....++.+.|...|+.+++..|+.+..+...+......|+.+.|..+|+++.
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--- 381 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE--- 381 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence 9999999 433345667777777766663479999999999999999999988888998999999999999999972
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
....+|......-...|+.+.+.+.+++++.
T Consensus 382 k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2337888888888889999999999999885
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=117.06 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHH
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQV 494 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~ 494 (561)
.+..+..+|..+... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ .+++.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 455667777777776 777777777777777777777777777777777777777777777777777765 677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHhc
Q 008550 495 FAATNMLQEALSHYEAALRIN------SQNEAAKKGLERLEKQM 532 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~l~~~~ 532 (561)
+...|++++|+..|+++++++ |+++.++..+..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 777777777787787777777 77777777777766543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=123.53 Aligned_cols=120 Identities=15% Similarity=0.032 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 237 LFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.|++++..+|+++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555666666667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
+.+++.+|.++.. |++++|+..|++++.+.|.++......
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 7777777777766 777777777777777766665554433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=126.46 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=88.2
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRN--GD 470 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~--~~ 470 (561)
...|++++|+..+++++..+|+++.++..+|.++... |++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666677777777777777777777777777766 777777777777777777777777777776 6666776 77
Q ss_pred HHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 471 AVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 471 A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
|+..++++++..|++ .++..+|.++...|++++|+..|+++++.+|+++.....+..+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 777777777776655 6667777777777777777777777777777665444433333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=125.30 Aligned_cols=97 Identities=22% Similarity=0.091 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
++.+|.++...|++++|+..|++++ .|...++..+|.++...|++++|+..|++++..+|+++.++..+|.++... |
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-E 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-c
Confidence 4555666666666666666666653 344455666666666666666666666666666666666666666666665 6
Q ss_pred ChHHHHHHHHHHHHhCCCCH
Q 008550 433 GREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~ 452 (561)
++++|+..|+++++..|.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCS
T ss_pred cHHHHHHHHHHHHHhCCCcc
Confidence 66666666666666555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.4e-16 Score=152.29 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=113.1
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC----------hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC--C
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR----------PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS--K 398 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~--~ 398 (561)
.++|+..+++++..+|++..+|..++.++...|+ +++++..++++++.+|++ .+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3467788888888888888888888777777766 666666666666666665 45666666666666 5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNAS-GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+++++..+.++++.+|.+..+|...+.++... | .++++++++.++++.+|.+..+|...+.++...++..++
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~------ 197 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS------ 197 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS------
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc------
Confidence 56666666666666666666666666666665 5 666666666666666666666666666666554222000
Q ss_pred HHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 478 YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 478 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.+.. -...+.+++|++++.+++.++|++..+|..+..+....+
T Consensus 198 ----~~~~---------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 198 ----GPQG---------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp ----SSCC---------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ----cccc---------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 0000 000133566666666666666666666666666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-15 Score=114.29 Aligned_cols=145 Identities=36% Similarity=0.542 Sum_probs=114.3
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCC-chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQN 80 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (561)
=.++++++.+++.+.|+.|+.+++++++...++++. ++..++++++++|+++|.+|+|.+|...|+++++.....++..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 358999999999999999999999999997666654 8999999999999999999999999999999999876555444
Q ss_pred ccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHH
Q 008550 81 STSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152 (561)
Q Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~ 152 (561)
... +.+ +.....++. ...+.+.+++|++|.|+.+.|++++|+..++.|+...+.+.+.+.||++|.
T Consensus 101 s~~--~~~--~~~ss~p~s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 101 KVR--PST--GNSASTPQS--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred Ccc--ccc--cccCCCccc--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 321 111 111111111 123468899999999999999999999999999999999999999999874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=121.85 Aligned_cols=130 Identities=8% Similarity=0.088 Sum_probs=114.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhcCCH--hH
Q 008550 225 CIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML-LKVKCDY--SK 301 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 301 (561)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI 354 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (561)
|+..+++++..+|+++.++..+|.++.. |++++|+..+++++...|.+.....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999999999999999999988 9999999999999999998765443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-14 Score=128.14 Aligned_cols=166 Identities=8% Similarity=0.002 Sum_probs=136.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-----
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----- 416 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----- 416 (561)
....+...+..+...|++++|+..+.++++..+.. ..++.+|.++...|++++|+..+++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455667788888999999999998888876653 125568888889999999999999998765543
Q ss_pred -HHHHHHHHHHHhhhcCChHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----
Q 008550 417 -AKALKLVGDVHASNASGREKAKKFYESAL---RLEPGYL----GAALALAELHVIEGRNGDAVSLLERYLKDWAD---- 484 (561)
Q Consensus 417 -~~~~~~l~~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---- 484 (561)
..++..+|.++... |++++|+.+|++++ +..|++. .++.++|.++...|++++|+.+++++++..+.
T Consensus 154 ~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 56888999999998 99999999999998 4456543 57889999999999999999999999887543
Q ss_pred ---hHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 008550 485 ---DSLHVKLAQVFAATNMLQEA-LSHYEAALRIN 515 (561)
Q Consensus 485 ---~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 515 (561)
..+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 36889999999999999999 78899998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=139.76 Aligned_cols=136 Identities=7% Similarity=-0.015 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC-
Q 008550 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK----------VKEALYAAREAMKAMPQSAKALKLVGDVHASNAS- 432 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 432 (561)
..++|+..+.+++..+|++ .+|+..+.++...|+ +++++..++++++.+|++..+|...+.++... +
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l-~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-SS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cc
Confidence 3456788888888888887 668888888888887 88888888888888888888888888888887 8
Q ss_pred -ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCH
Q 008550 433 -GREKAKKFYESALRLEPGYLGAALALAELHVIEG-RNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNML 501 (561)
Q Consensus 433 -~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~ 501 (561)
++++++.++.++++.+|.+..+|...+.+....| .+++++++++++++.+|.+ .+|..++.++...+..
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 5688888888888888888888888888888888 8888888888888888877 7888888888776443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=112.99 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLH 488 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~ 488 (561)
+.++..+|..+... |++++|+.+|+++++++|+++.++.++|.++..+|++++|+..+++++++.|+. .++
T Consensus 8 A~a~~~lG~~~~~~-~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQ-KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34455566666665 666666666666666666666666666666666666666666666666655432 357
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
..+|.++..+|++++|+++|++++...|+ ++....+..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 77888888888888888888888888774 4554444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=120.22 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
.++..|..+...|++++|+..|++++ .| ++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45667999999999999999999885 33 7889999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 297 CDYSKLSKLVHDLLSIDPSRP----------------EVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
|++++|+..++++++..|.+. .+++.+|.++.. |++++|+..+++++...|.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999888766 788888888888 888899999998888888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-14 Score=111.77 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH
Confidence 33555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHhcC------CCCHHHHHHHHH
Q 008550 300 SKLSKLVHDLLSID------PSRPEVFVALSV 325 (561)
Q Consensus 300 ~~A~~~~~~~~~~~------~~~~~~~~~l~~ 325 (561)
++|+..++++++.+ |.++.++..++.
T Consensus 89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 89 ASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 55555555555554 444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=116.21 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-------CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPG-------YL-----GAALALAELHVIEGRNGDAVSLLERYLKD---- 481 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 481 (561)
..+...|..+... |++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~-g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4455566666665 6666666666666666666 32 27888888888888888888888888888
Q ss_pred ---CCCh-HHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 482 ---WADD-SLH----VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 482 ---~~~~-~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+|+. .+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 8887 788 999999999999999999999999999999888777777766543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=127.56 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSA----------------KALKLVGDVHASNASGREKAKKFYESALRLEP 449 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p 449 (561)
+..+|..+...|++++|+..|++++...|.++ .++..+|.++... |++++|+.+++++++.+|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCc
Confidence 44444555555555555555555555444443 4555555555554 555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 450 GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
.++.+++.+|.++...|++++|+..|+++++..|++ .++..++.++...|+..++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555544 45555555555555444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=114.63 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
.+..+|.++...|++++|+..|++++...|.++.++..+|.++... |++++|+.++++++..+|.++.++..+|.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888887 888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCh-HHH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 465 EGRNGDAVSLLERYLKDWADD-SLH--VKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~-~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|++++|+..++++++..|.+ .++ ..++..+...|++++|+..+.++..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888888766 455 44444577788888888888876554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-13 Score=124.95 Aligned_cols=170 Identities=13% Similarity=0.032 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
..+...+..+...|++++|+..+.++++..|.... .+..+|.++...|++++|+..+++++...+.....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---- 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---- 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch----
Confidence 34445566666666666666666666665554321 22334444444445555555555544433222000
Q ss_pred HHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH---HhCCCh-----HHHHHHHHHHHh
Q 008550 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ---ELRPDL-----RSYQGLVHSYLQ 395 (561)
Q Consensus 324 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~-----~~~~~l~~~~~~ 395 (561)
.....++..+|.+|...|++++|+.+|++++ +..|+. .+++++|.+|..
T Consensus 152 -----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 152 -----------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp -----------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 0002244455555555555555555555555 222321 235555555555
Q ss_pred cCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHhhhcCChHHH-HHHHHHHHHh
Q 008550 396 FSKVKEALYAAREAMKAMPQ------SAKALKLVGDVHASNASGREKA-KKFYESALRL 447 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~A-~~~~~~a~~~ 447 (561)
.|++++|+.++++++...++ .+.+++.+|.++... |++++| ..++++++.+
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL-EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHH
Confidence 55555555555555544321 145555566666655 666666 5555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=114.36 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=74.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++..|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 44446666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHH--HHh-cCHhHHHHHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVL--WER-KDERGALSYAEKSI 343 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~A~~~~~~~~ 343 (561)
++++|+..+++++...|.++.++..++.+ +.. |++++|+..+.+..
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666666666555555333332 444 55555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-15 Score=126.11 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=102.1
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----------------HHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----------------RSYQGLVHS 392 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~l~~~ 392 (561)
|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.. .++..+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 97 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333334445555555555555555555555555554432 457888999
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
+...|++++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.++...++..++.
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 99999999999999999999999999999988888877776
Q ss_pred -HHHHHH
Q 008550 473 -SLLERY 478 (561)
Q Consensus 473 -~~~~~~ 478 (561)
..+.++
T Consensus 177 ~~~~~~~ 183 (198)
T 2fbn_A 177 KLTFGGM 183 (198)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=110.44 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH-------HHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-------GAALA 457 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~ 457 (561)
++..+|..+++.|++++|+..|+++++++|+++.++..+|.++... |++++|+..++++++++|++. .++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888888 888888888888888877653 46778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHH
Q 008550 458 LAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLA 492 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la 492 (561)
+|.++...|++++|++.|++++...|+++....+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 88888899999999999999988888775554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=113.46 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
.....++..|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445566688888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+...|++++|+..|+++++++|+++..+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 88888888888888888888888887666665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-14 Score=110.82 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+..|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
++++|+..+++++...|.++.++..++.++..
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=108.79 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=104.8
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
.|.....++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------------------------------- 56 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR----------------------------------- 56 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH-----------------------------------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH-----------------------------------
Confidence 356778888899999999999999999999999888887777665
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...
T Consensus 57 -----a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 57 -----AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -----HHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -----HHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 777778889999999999999999988899999999999999999999999999999888888888888888776
Q ss_pred CC
Q 008550 297 CD 298 (561)
Q Consensus 297 ~~ 298 (561)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 64
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-14 Score=110.48 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
.++..|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555555555555555555555555555554444444445444444
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
|++++|+..+++++...|.+..++..++.++.
T Consensus 98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44444444444444444444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=114.67 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
.+.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34557888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 008550 325 VLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLL 360 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 360 (561)
.++.. |++++|+.+|++++.++|++..+++..+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99988 9999999999999999999888776666543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-12 Score=121.95 Aligned_cols=362 Identities=7% Similarity=-0.033 Sum_probs=239.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC-HH
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE-TK 125 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~ 125 (561)
+..+...+-.|+++.+...|++++...| ..+++........+.+. .+
T Consensus 18 yer~l~~~P~~~~e~~~~iferal~~~p--------------------------------s~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 18 MEHARRLYMSKDYRSLESLFGRCLKKSY--------------------------------NLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTCC--------------------------------CHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHhccCC--------------------------------CHHHHHHHHHHHHHhCchHH
Confidence 3333334444889999999999998754 23455555555555543 22
Q ss_pred HHHHHHhc----CCCcccchhHHHHHHHHHH----hcCChhhHHHHHHHHHhcCCCcHHH-HHHHHHHcCCcccHhHHhh
Q 008550 126 AAIVEMEG----IPSKARNLQMSLLMAKLYR----NSRHNRGAVACYKECLRHCPFFIEA-ITALAELGATPKDIISLFA 196 (561)
Q Consensus 126 ~A~~~l~~----~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~~~~~~~~~ 196 (561)
.....|+. +..++.+...|......+. .+|+.+.+..+|++++..-+.+.+- |..........+ .
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~-~----- 139 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN-K----- 139 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-H-----
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-c-----
Confidence 23334443 2335667788888887765 3577889999999999953333222 211111100000 0
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCC---------HH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHILLEMAKVDAIIGK---------ND 266 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~---------~~ 266 (561)
... ........+.+..|...++.+....+. +...|......- .++ ..
T Consensus 140 ----------------~~~-----~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E--~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 140 ----------------ITG-----KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE--MENGMKLGGRPHES 196 (493)
T ss_dssp ----------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH--HTCTTCCCHHHHHH
T ss_pred ----------------ccH-----HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--hcCCccCcchhhHH
Confidence 000 011111224555666666666554332 445555544432 222 34
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHh--
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR-- 344 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~-- 344 (561)
.....|++++...|..+..|..++..+...|+.+.|..++++++.. |.+...|...+.....+ +....+.....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh---HHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999999999999999 98877777655442111 11111111110
Q ss_pred --------ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC--hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHC
Q 008550 345 --------IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--LRSYQGLVHSYLQFS-KVKEALYAAREAMKAM 413 (561)
Q Consensus 345 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 413 (561)
..+....+|...+....+.+..+.|...|.++ . .|. ...|...+.+....+ +++.|..+|+.+++..
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 01112356778888888888999999999999 3 333 245666676666666 6999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
|+.+..+...+...... |+.+.|...|+++ +.....|......-...|+.+.+.+.+++++.
T Consensus 351 ~~~~~~~~~yid~e~~~-~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRI-GDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999888888888887 9999999999997 45677888888888889999999999998875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=107.56 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=113.8
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
.|.++..++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------------------------- 52 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR----------------------------------- 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH-----------------------------------
Confidence 356778899999999999999999999999999999987777666
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|.++.++..++.++...
T Consensus 53 -----a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 53 -----AAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCH
Q 008550 297 CDY 299 (561)
Q Consensus 297 ~~~ 299 (561)
|++
T Consensus 128 ~~~ 130 (131)
T 2vyi_A 128 REA 130 (131)
T ss_dssp TTC
T ss_pred hcC
Confidence 875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-13 Score=123.47 Aligned_cols=159 Identities=14% Similarity=-0.006 Sum_probs=97.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHHH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIH------ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYMD 287 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 287 (561)
..+..+...|++++|+..++++++..+.++. .+..+|.++...|++++|+.+|++++...+... .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467778888888888888888887766654 223467777777788888888888887544332 2466
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcC---CCC----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC------hhHH
Q 008550 288 EYAMLLKVKCDYSKLSKLVHDLLSID---PSR----PEVFVALSVLWER-KDERGALSYAEKSIRIDERH------IPGY 353 (561)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~ 353 (561)
.+|.++...|++++|+.+++++++.. |.+ ..+++.+|.++.. |++++|+.++++++.+.+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 67777777777777777777766321 111 2345555555555 55555555555555543222 3445
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHhHH
Q 008550 354 IMKGNLLLSMKR-PEAAVIAFRGAQE 378 (561)
Q Consensus 354 ~~l~~~~~~~~~-~~~A~~~~~~~~~ 378 (561)
..+|.++...|+ +++|+..|++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 555555555552 3555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=109.25 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=84.0
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVK 490 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 490 (561)
..|.++..+..+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|++ .+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVG-RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHh-CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 3456667777777777776 777777777777777777777777777777777777777777777777777665 67777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHh
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQ-----NEAAKKGLERLEKQ 531 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~l~~~ 531 (561)
+|.++...|++++|+..|+++++++|+ +..+...+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776 66666666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=107.69 Aligned_cols=98 Identities=22% Similarity=0.183 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++... |++++|+..|+++++++|+++.++..+|.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 555666666666666666666666666666666666666666665 6666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 008550 466 GRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~ 484 (561)
|++++|+..++++++..|+
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 6666666666666555553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=106.65 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=84.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~ 318 (561)
+++|+..++++++.+|.++.
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999988887643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=140.94 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=77.4
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----------------HHHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSY 393 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~ 393 (561)
+++++|+..++.++...|.....+..+|..++..|++++|+..|+++++..|.+ .++.++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555566666666666666666666666666655543 2355555555
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
..+|++++|+..|++++..+|+++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...|++++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555 55555555555555555555555555555555555544443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=113.10 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRL------------------EPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.+...|..+... |++++|+..|.+++.. +|.+..++.++|.++...|++++|+..++++++
T Consensus 13 ~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQ-KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 344444444444 5555555555555544 566677888889999999999999999999998
Q ss_pred hCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhcc
Q 008550 481 DWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE-AAKKGLERLEKQMK 533 (561)
Q Consensus 481 ~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~ 533 (561)
.+|++ .+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+...++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 88877 7889999999999999999999999999999998 77888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=103.50 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVF 495 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~ 495 (561)
+..+..+|.++... |++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|++ .++..+|.++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSV-GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666777777776 777777777777777777777777777777777777777777777777777765 6777777888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 496 AATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
...|++++|...|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 88888888888888888888888877777776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-13 Score=103.51 Aligned_cols=114 Identities=19% Similarity=0.250 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred h-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 329 R-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
. |++++|+.++++++...|.++.++..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 5 555555555555555555555555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-13 Score=103.31 Aligned_cols=114 Identities=21% Similarity=0.323 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVF 495 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~ 495 (561)
...+..+|.++... |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+ .++..+|.++
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45566666666665 666666666666666666666666666666666666666666666666666544 5666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 496 AATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
...|++++|..+|+++++.+|+++.++..++.+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 666667777777776666667666666666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=108.28 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=103.8
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SL 487 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 487 (561)
..|.+...+..+|..+... |++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++..|++ .+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKC-GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred cchHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3466788888888888887 88899999999988888887 7788888999999999999999999999888876 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
++.+|.++...|++++|+.+|+++++++|+++.++..+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 889999999999999999999999999999999998888886543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=120.07 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=92.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCHH------HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh------hHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPE------VFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMK 356 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~l 356 (561)
+..+...|++++|...+++++...+..+. .+..+|.++.. +++++|+.++++++...+... .++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44555666666666666666665554443 22235555555 677777777777766543322 246667
Q ss_pred HHHHHhcCChhHHHHHHHHhHHh---C-CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQEL---R-PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKL 422 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~---~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~ 422 (561)
|.+|...|++++|+.+|+++++. . ... .+++++|.+|...|++++|+.+++++++..+.. +.+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776642 1 111 245666666666666666666666666554322 556666
Q ss_pred HHHHHhhhcCC-hHHHHHHHHHHHHh
Q 008550 423 VGDVHASNASG-REKAKKFYESALRL 447 (561)
Q Consensus 423 l~~~~~~~~~~-~~~A~~~~~~a~~~ 447 (561)
+|.++... |+ +++|+.+|++++.+
T Consensus 242 lg~~~~~~-g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKL-EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHHH
Confidence 66666665 53 46666666666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-13 Score=106.98 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
+|.++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCC
Q 008550 325 VLWER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
.++.. |++++|+..|++++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 65555 6666666666666555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=138.93 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=107.4
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---------------MTYMDEYAM 291 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~ 291 (561)
..+++++|+..++.++...|.....+..+|.+++..|++++|+..|+++++.+|.+ ..++..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888899999999999999999999999999998887 466667777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
++..+|++++|+..|++++.++|+++.+++.+|.++.. |++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766 77777777777777777777777777777776666666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-12 Score=99.35 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=89.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 44477888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+++|...++++++..|+++.++..++.+.
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888888888888888887777777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=107.47 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCC-------CH-----HHHHHHHHHHhhhcCChHHHHHHHHHHHHh------
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQ-------SA-----KALKLVGDVHASNASGREKAKKFYESALRL------ 447 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------ 447 (561)
+...|..+...|++++|+..|+++++.+|+ +. .+|.++|.++... |++++|+.+|++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhcccc
Confidence 344444444445555555555555544444 22 2666666666665 6666666666666666
Q ss_pred -CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 448 -EPGYLGAA----LALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 448 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
+|++..+| +++|.++..+|++++|+..|++++++.|++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 66666666 666666666666666666666666666544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=115.53 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=92.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhcCCH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888555444433356778888888888888888888888888773 233345667777777777777
Q ss_pred hHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC--h----hHHHHHHHHHHhcCC
Q 008550 300 SKLSKLVHDLLSI---DPSR----PEVFVALSVLWER-KDERGALSYAEKSIRIDERH--I----PGYIMKGNLLLSMKR 365 (561)
Q Consensus 300 ~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~ 365 (561)
++|+..+++++.. .+++ ..++..+|.++.. |++++|+.++++++...+.. + .++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777776665 3322 2345555666655 66666666666655442211 1 223455555555555
Q ss_pred hhHHHHHHHHhHHh
Q 008550 366 PEAAVIAFRGAQEL 379 (561)
Q Consensus 366 ~~~A~~~~~~~~~~ 379 (561)
+++|+..+++++.+
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-13 Score=109.32 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHh------------------CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQEL------------------RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
..+...|..++..|++++|+..|.+++.. .|.. .++.++|.++...|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45566677777777777777777776666 3333 3466666666666666666666666666
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-GAALALAELHVI 464 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~ 464 (561)
.+|+++.+++.+|.++... |++++|+..|++++.++|+++ .+...++.+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666665 666666666666666666665 444444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=102.34 Aligned_cols=113 Identities=18% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKL 491 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l 491 (561)
.++.+|.++... |++++|+..|+++++..|+++ .+++.+|.++...|++++|+..+++++...|++ .+++.+
T Consensus 4 ~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKN-GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 356677777776 777777777777777777776 677777888888888888888888887777753 567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 492 AQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 492 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|.++...|++++|+..|+++++.+|+++.+...+..+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 88888888888888888888888888888887777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-13 Score=113.19 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=98.6
Q ss_pred HhcCChhHHHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHhhhcC
Q 008550 361 LSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKA------MPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 432 (561)
+..|++++|...++.... +|.. .++..+|.++...|++++|+..+++++.. .|....++..+|.++... |
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA-G 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-T
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-C
Confidence 345666666663333322 3322 34666666666666666666666666662 233355667777777776 7
Q ss_pred ChHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---Ch----HHHHHHHHHHHHc
Q 008550 433 GREKAKKFYESALRL---EPGY----LGAALALAELHVIEGRNGDAVSLLERYLKDWA---DD----SLHVKLAQVFAAT 498 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~la~~~~~~ 498 (561)
++++|+.++++++.. .+++ ..++..+|.++...|++++|+..+++++...+ +. .++..+|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777777766 3322 34567778888888888888888887776532 11 3567888888888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 008550 499 NMLQEALSHYEAALRINS 516 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p 516 (561)
|++++|..++++++++..
T Consensus 161 g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 888888888888887744
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=100.28 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=88.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAML 292 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 292 (561)
+..|.+++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4458888888888888888888888888877 788888888888888888888888888888888 7778888888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+...|++++|+..+++++...|+++.+......+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 88888888888888888888888876665555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-12 Score=103.50 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
.....+..|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34445555777777777777777777777777765 666777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
.++...|++++|+..+++++...|+++.++..++.+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777766666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=105.50 Aligned_cols=111 Identities=20% Similarity=0.135 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCCh----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR----------EKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
+.+.+++|++.++++++.+|+++.+|+++|.++... +++ ++|+..|+++++++|++..+++++|.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 445677788888888888888888888888877776 654 477777788888887777777777777777
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
+|.+ .|+. -...|++++|+++|++|++++|++...+..+...
T Consensus 93 lg~l-------------~P~~---------~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFL-------------TPDE---------TEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHH-------------CCCH---------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hccc-------------Ccch---------hhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6532 2221 0012456666666666666666666555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=101.91 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--h-HHHHH
Q 008550 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD--D-SLHVK 490 (561)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~-~~~~~ 490 (561)
|+++..+..+|.++... |++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|. . .++..
T Consensus 3 p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDA-GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSS-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 44444555555555554 55555555555555555555555555555555555555555555555555554 3 45555
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCc
Q 008550 491 LAQVFAAT-NMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 491 la~~~~~~-g~~~~A~~~~~~al~~~p~ 517 (561)
+|.++... |++++|++++++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 55555555 5555555555555555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-13 Score=125.15 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=95.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
.....+..+|..++..|++++|+..|++++...|.+.. +...+++.++...+. ..+++++|.++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 34677888999999999999999999999998887642 233444555544332 24788899999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHH-HHHcCCHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQV-FAATNMLQEAL 505 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~-~~~~g~~~~A~ 505 (561)
... |++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++..|++ .++..++.+ ....+..+++.
T Consensus 241 ~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 999999999999999999999999999999999999999999999999998877 778888887 44557788888
Q ss_pred HHHHHHHhcCCccHHH
Q 008550 506 SHYEAALRINSQNEAA 521 (561)
Q Consensus 506 ~~~~~al~~~p~~~~~ 521 (561)
..|.+++...|+++..
T Consensus 320 ~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 320 EMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ----------------
T ss_pred HHHHHhhCCCCCCCCC
Confidence 9999999999887643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=101.27 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD--------DSLH 488 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~ 488 (561)
+..+..+|.++... |++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|. ..++
T Consensus 4 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKK-KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 44556666666665 66666666666666666666666666666666666666666666666665442 3466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+|.++...|++++|..+|+++++..| ++.....+..+...++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777 5667777776666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=126.23 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHS 392 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 392 (561)
+.....+..+|..+.. |++++|+..|++++...|.+. .+...+++.++...+. ..+++++|.+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~--------~~~~~nla~~ 239 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH--------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH--------HHHHHHHHHH
Confidence 4456789999999999 999999999999999998754 1233445555544332 1368889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDA 471 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A 471 (561)
+...|++++|+..+++++..+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..++.+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 999999999999999999998888888888 4455677888
Q ss_pred HHHHHHHHhhCCCh
Q 008550 472 VSLLERYLKDWADD 485 (561)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (561)
...|.+++...|.+
T Consensus 319 ~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 319 KEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------
T ss_pred HHHHHHhhCCCCCC
Confidence 88898888887764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-13 Score=104.32 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN----------GDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
+.+++|+..++++++++|++++++.++|.++...|++ ++|+..|+++++++|+. .+|+.+|.+|..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 7789999999999999999999999999999999876 59999999999999987 899999999998874
Q ss_pred ----HHHHHHHHHHHHh
Q 008550 501 ----LQEALSHYEAALR 513 (561)
Q Consensus 501 ----~~~A~~~~~~al~ 513 (561)
+..|...|++|++
T Consensus 96 l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQ 112 (158)
T ss_dssp HCCCHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHH
Confidence 4555556666555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-13 Score=134.63 Aligned_cols=121 Identities=15% Similarity=0.100 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++++|+++.++..+|.++..+|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444555555555555555555555555555555566555555 556666666666665555555555556666666666
Q ss_pred hHHHHHHHHHHHhhCCCh-HHHHHHHHH--HHHcCCHHHHHHHHH
Q 008550 468 NGDAVSLLERYLKDWADD-SLHVKLAQV--FAATNMLQEALSHYE 509 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~~~-~~~~~la~~--~~~~g~~~~A~~~~~ 509 (561)
+++|++.++++++..|++ .++..++.+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666665555544 445555555 555566666666665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-11 Score=117.74 Aligned_cols=194 Identities=10% Similarity=0.058 Sum_probs=109.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----------------HILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (561)
.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34457777788888888888888887766542 2456677777777777777777777666544
Q ss_pred CChH------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-
Q 008550 281 YIMT------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KDERGALSYAEKSIRID- 346 (561)
Q Consensus 281 ~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~- 346 (561)
.... +...++.++...|++++|+.++++++...+ ....++..+|.++.. |++.+|+..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3321 233445555555666666666665554321 113455555665555 66666666665555431
Q ss_pred -----CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC---Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 347 -----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP---DL-----RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 347 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
+....++..+|.+|...|++++|...+++++...+ .. ..+..+|.++...|++++|...|.+++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11224455555555566666666655555554421 11 1244455555555555555555555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=100.25 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-------HHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-------LGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~ 456 (561)
..+..+|.++...|++++|+..+++++...|.++.++..+|.++... |++++|+.++++++...|.+ +.++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34677778888888888888888888888888888888888888877 88888888888888877665 67778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcC
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATN 499 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g 499 (561)
.+|.++...|++++|+..++++++..|+...+..++.+....+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888776666667766655443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=130.16 Aligned_cols=129 Identities=11% Similarity=0.086 Sum_probs=115.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH--HHh-cCHhHHHHHHH-----------HHHhccCCCh
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVL--WER-KDERGALSYAE-----------KSIRIDERHI 350 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~A~~~~~-----------~~~~~~~~~~ 350 (561)
|+..++++++..|+++.++..++.+ +.. |++++|+..++ +++...|...
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 9999999999999999999999988 666 99999999999 7777766643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=97.66 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=67.5
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC--ChhHHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER--HIPGYIM 355 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~ 355 (561)
+|++..++..+|.++...|++++|+..++++++..|.++.++..+|.++.. |++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 455556666666666666666666666666666666666666666666666 6666666666666666666 6666666
Q ss_pred HHHHHHhc-CChhHHHHHHHHhHHhCCC
Q 008550 356 KGNLLLSM-KRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 356 l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 382 (561)
+|.++... |++++|+..+++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 66666666 6666666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=120.08 Aligned_cols=214 Identities=11% Similarity=0.016 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
......|..+...|++++|++.|.++++..|.........+... ...... ..++..+|.+|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~----------~~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDD------KRRNEQ----------ETSILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCS------HHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHH------HHhhhH----------HHHHHHHHHHHHHC
Confidence 34445556666666666666666666666555432211111000 000000 12356778888888
Q ss_pred CChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHhhh
Q 008550 364 KRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMP------QSAKALKLVGDVHASN 430 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~ 430 (561)
|++++|+..+.+++...+.. .+...++.++...|++++|+.++++++...+ ....++..+|.++...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 88888888888877764432 1245667777778888888888888776432 2266778888888888
Q ss_pred cCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---Ch-----HHHHHHHHHHH
Q 008550 431 ASGREKAKKFYESALRLE------PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---DD-----SLHVKLAQVFA 496 (561)
Q Consensus 431 ~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~-----~~~~~la~~~~ 496 (561)
|++++|..++++++... |....++..++.++...|++++|...+++++...+ .+ .++..+|.++.
T Consensus 149 -g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 149 -KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp -TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred -cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 88888888888887642 22356788889999999999999999988876542 11 56778888888
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 008550 497 ATNMLQEALSHYEAALRI 514 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~ 514 (561)
..|++.+|..+|.++++.
T Consensus 228 ~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSSCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 899999999999888765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=101.51 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=81.2
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 227 ASNDYKGGLELFAELLQR---FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 358889999999999988 58888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHH
Q 008550 304 KLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l 323 (561)
..+++++...|+++.+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 99999999888887765433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=98.58 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=84.2
Q ss_pred hcCChhhHHHHHHHHHhc---CCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc
Q 008550 153 NSRHNRGAVACYKECLRH---CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN 229 (561)
Q Consensus 153 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (561)
..|++++|+..|+++++. +|.+..++..+ |.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~l----------------------------------------g~~~~~~~ 41 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGL----------------------------------------GSTFRTLG 41 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHH----------------------------------------HHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHH----------------------------------------HHHHHHcC
Confidence 468999999999999999 46666666655 89999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++.......
T Consensus 42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987654333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=116.15 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHH----------------hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQE----------------LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (561)
+..+|..+...|++++|+..|+++++ ..|.. .++.++|.++...|++++|+..++++++.+|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 44555555555555555555555555 33333 34566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
++.+++.+|.++... |++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 306 ~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 NTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665 66666666666666666666666666666666555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=101.85 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LG 453 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~ 453 (561)
+..+|.++...|++++|+..+++++...+.. ..++..+|.++... |++++|+.++++++...+.. ..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444444445555555444444433211 13455555555555 55555555555555543221 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC---Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWA---DD----SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
++..+|.++...|++++|+..+++++...+ +. .++..+|.++...|++++|..++++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556667777777777777777776665432 11 4667777777778888888888877776643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=115.20 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRS----------------IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID 313 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 313 (561)
..+..+|..+...|++++|+..|+++++ .+|.+..++..+|.++...|++++|+..++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3455666666666666666666666665 334444444445555555555555555555555444
Q ss_pred CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 314 PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 314 ~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
|+++.+++.+|.++.. |++++|+..|+++++++|.+..++..++.++...++++++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 4444454445444444444444444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=99.73 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------H
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------A 417 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 417 (561)
.++..+|.++...|++++|+..+++++...+.. .++..+|.++...|++++|+..+++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 455666777777777777777777766654322 246677777777777777777777777654432 4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
.++..+|.++... |++++|+.++++++...+. ...++..+|.++...|++++|+..++++++..
T Consensus 90 ~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 90 QSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5677778887777 8888888888887765321 13466778888888888888888888887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=88.86 Aligned_cols=82 Identities=12% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+. .+++.+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555666666665566666666666666666666666666655554 55566666666666666666666666665
Q ss_pred CCc
Q 008550 515 NSQ 517 (561)
Q Consensus 515 ~p~ 517 (561)
.|+
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=86.93 Aligned_cols=83 Identities=16% Similarity=0.039 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 401 EALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+|+..|+++++.+|+++.+++.+|.++... |++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777888888888888888888888877 8888888888888888888888888888888888888888888888887
Q ss_pred hCCC
Q 008550 481 DWAD 484 (561)
Q Consensus 481 ~~~~ 484 (561)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-11 Score=91.39 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALA 457 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~ 457 (561)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++... |++++|+..++++++++|++ ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34666777777777777777777777777777777777777777776 77777777777777777776 666666
Q ss_pred HHHHHHHcCChHHHHHHHH
Q 008550 458 LAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 458 la~~~~~~g~~~~A~~~~~ 476 (561)
+|.++...|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777776666666555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=88.51 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=57.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLL 293 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~ 293 (561)
..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..+|.++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 88 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQ 88 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 346666666777777777777766666666666666777767777777777777766666666 55666666666
Q ss_pred HhcCCHhHHHHHHH
Q 008550 294 KVKCDYSKLSKLVH 307 (561)
Q Consensus 294 ~~~~~~~~A~~~~~ 307 (561)
...|+++.|+..++
T Consensus 89 ~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 89 GAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHCCCCCSSSSS
T ss_pred HHHHhHhhhHhHHH
Confidence 66666555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-09 Score=78.42 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
..+..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+.+++++++.+|+++.++..+|.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777777776 77777777777777777777777777776665
Q ss_pred HcC
Q 008550 464 IEG 466 (561)
Q Consensus 464 ~~g 466 (561)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-09 Score=83.41 Aligned_cols=120 Identities=17% Similarity=0.068 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAV 472 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~ 472 (561)
+++++|+.+|+++.+....... +|.++... +..++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g-~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQ-INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTT-SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcC-CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3567777777777776543333 77777765 6777788888877765 567777788888777 77888888
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 473 SLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
.+|+++.+. .+....+.+|.+|.. .+++++|+.+|+++.+.. ++.+...|.
T Consensus 82 ~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 888887765 344677788888877 778888888888887763 444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=79.07 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=81.54 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
|+++.+++.+|.++...|++++|+..|+++++.+|+. .+++.+|.++...|++++|+..|++++++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444444444444443 4444444444444444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=79.78 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=72.1
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLH 488 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 488 (561)
.+|+++.+++.+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.. ...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4799999999999999998 999999999999999999999999999999999999999999999999886543 344
Q ss_pred HHHHHHHHH
Q 008550 489 VKLAQVFAA 497 (561)
Q Consensus 489 ~~la~~~~~ 497 (561)
..+..++..
T Consensus 81 ~~l~~~l~~ 89 (100)
T 3ma5_A 81 SELQDAKLK 89 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.6e-10 Score=81.91 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4478888888888888888888888888888 88888888888888888888888888888888776633 44
Q ss_pred HhHHHHHHHHHHhcCCCC
Q 008550 299 YSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~ 316 (561)
+.+++..|+++....|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 566666666665555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=90.29 Aligned_cols=122 Identities=15% Similarity=0.045 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh--cC-ChHHHHH----HHH--HHHHhCCCCHHHHHHHHHHHHHcCChH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASN--AS-GREKAKK----FYE--SALRLEPGYLGAALALAELHVIEGRNG 469 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~-~~~~A~~----~~~--~a~~~~p~~~~~~~~la~~~~~~g~~~ 469 (561)
..+|+.+|+++++.+|+++.++..++.++... .+ ....... .++ .++..+|.++.++..++..+...|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 35566666666666666666655555554321 01 0001111 111 123456888888888888888889999
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 470 DAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 470 ~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
+|+..+++++.++|+...+..+|.++...|++++|++.|++|+.++|..+.
T Consensus 295 ~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 295 ESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 999999999998877677788899999999999999999999999987763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=80.15 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAK-ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
..|.++...|++++|+..++++++.+|+++. +++.+|.++... |++++|+..|+++++.+|+++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455555566666666666666666666655 666666666555 666666666666666666555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-08 Score=79.03 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=45.9
Q ss_pred CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHh----cCCHHHHHHHH
Q 008550 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQ----FSKVKEALYAA 406 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 406 (561)
++++|+.+|+++.+... +.+. +|.+|...+.+++|+.+|+++.+. .+..+.+.+|.+|.. .+++++|+.+|
T Consensus 10 d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 34444444444444331 2222 444444444444444444444433 122334444444444 34444444444
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhh----hcCChHHHHHHHHHHHHh
Q 008550 407 REAMKAMPQSAKALKLVGDVHAS----NASGREKAKKFYESALRL 447 (561)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~ 447 (561)
+++.+. .++.+.+.+|.+|.. . +++++|+.+|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHC
Confidence 444433 334444444444443 3 4444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-08 Score=85.08 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=90.3
Q ss_pred HHCCCCHHHHHHHHHHHhhh----cCC------hHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHH
Q 008550 411 KAMPQSAKALKLVGDVHASN----ASG------REKAKKFYESALRLEPG--YLGAALALAELHVIE-----GRNGDAVS 473 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~----~~~------~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 473 (561)
..+|++++.+++.|.+.... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 45678888888877766431 133 37899999999999999 566999999999995 99999999
Q ss_pred HHHHHHhhCCCh--HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcc
Q 008550 474 LLERYLKDWADD--SLHVKLAQVFAAT-NMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 474 ~~~~~~~~~~~~--~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 518 (561)
+|+++++++|+. ..++.+|..+... |++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999953 8999999999884 99999999999999988773
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=78.78 Aligned_cols=101 Identities=21% Similarity=0.104 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-CCh--HHHHHHHHHHHHcCCHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLLERYLKDW-ADD--SLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~~~--~~~~~la~~~~~~g~~~~A~~ 506 (561)
....+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++..++.. |.. +.++.+|..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3466778888888888999999999999999998 6679999999999998 633 899999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 507 HYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 507 ~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+++++++.+|+|..+......+...+.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998888877653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-08 Score=88.77 Aligned_cols=155 Identities=16% Similarity=0.075 Sum_probs=92.3
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 008550 240 ELLQRFPNNIHIL--LEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 240 ~~~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (561)
++....|.++.+| +..|..+...++ ..+|+.+|+++++++|++..++..++.++.... ...|
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------------~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------------SQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------------ccCC
Confidence 3445566665444 445666665544 467888888888888888777777776665110 0001
Q ss_pred CCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHH
Q 008550 315 SRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL 394 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (561)
....... ....+... ..++...|.++.++..++..+...|++++|+..+++++.++|+..+|..+|.++.
T Consensus 252 ~~~~~~~---------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~ 321 (372)
T 3ly7_A 252 LDEKQLA---------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE 321 (372)
T ss_dssp CCHHHHH---------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CchhhHH---------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1111000 00111211 1233456666777777777666667777777777777777766555667777777
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCH
Q 008550 395 QFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
..|++++|+..|.+++.++|..+
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcC
Confidence 77777777777777777777554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-07 Score=80.17 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHHhhh----cCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CChHHHH
Q 008550 401 EALYAAREAMKAMPQ--SAKALKLVGDVHASN----ASGREKAKKFYESALRLEPGY-LGAALALAELHVIE-GRNGDAV 472 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~----~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~-g~~~~A~ 472 (561)
.|...++++++++|+ +..++..+|.+|... .|+.++|..+|+++++++|+. ..+++.+|..+... |++++|.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 444444444444444 333444444444441 245555555555555555542 45555555554442 5555555
Q ss_pred HHHHHHHhhCCC
Q 008550 473 SLLERYLKDWAD 484 (561)
Q Consensus 473 ~~~~~~~~~~~~ 484 (561)
.++++++...|.
T Consensus 261 ~~L~kAL~a~p~ 272 (301)
T 3u64_A 261 EALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCGG
T ss_pred HHHHHHHcCCCC
Confidence 555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=96.43 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=94.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh-----CCCCHH--
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDVHASNASGREKAKKFYESALRL-----EPGYLG-- 453 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-- 453 (561)
.+..+..+|++++|+..+++++.. .|++ ...+.++|.+|..+ |++++|+.++++++.+ .|+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 344556778888888888888764 2333 45677888888887 8888888888888764 455554
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 454 -AALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 454 -~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
.+.++|.+|..+|++++|..++++++++. |+. ++...++.++..+|.+++|...|.++.+..
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888653 332 566788888889999999999998886543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=68.42 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH
Q 008550 245 FPNNIHILLEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|++++|+.+++++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57777778888877766655 67788888888888888888888888888888888888888888777777643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=68.24 Aligned_cols=71 Identities=21% Similarity=0.110 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 413 MPQSAKALKLVGDVHASNASG---REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
+|+++..+..+|.++... ++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777766544 33 467777777777777777777777777777777777777777776666665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=92.02 Aligned_cols=123 Identities=11% Similarity=-0.059 Sum_probs=84.7
Q ss_pred HHHHhcCChhHHHHHHHHhHHhC-----CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CCCC---HHHH
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELR-----PDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKAL 420 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~ 420 (561)
..+...|++++|+..+++++++. |++ .++.++|.+|..+|++++|+.++++++.. .|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556677777777777776652 222 24677777777777777777777777653 2333 4466
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRL-----EPGYLG---AALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
.++|.+|..+ |++++|+..|++++++ .|+++. ....++.++..+|.+++|...|.++.+.
T Consensus 397 ~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877 8888888888887763 566654 4456777888888888888888777553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-06 Score=81.42 Aligned_cols=174 Identities=9% Similarity=-0.062 Sum_probs=102.3
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHHHHHHhcCC---------hhHHHHHHHHhHHh--CCChHHH
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMKR---------PEAAVIAFRGAQEL--RPDLRSY 386 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~--~~~~~~~ 386 (561)
+..+-..+.+ |+.++|+..|+++....- -+..+|..+-.++...+. .+.|...|++.... .|+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444455555 777777777777665421 234455555555544333 45666666666554 3555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLE-PGYLGAALALAELHVI 464 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~ 464 (561)
..+...|.+.|++++|..+++++.... +.+...+..+-..+.+. |+.++|.+.|+.+.+.. ..+...+..+...+.+
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 677777777777777777777665542 22556666666666665 77777777777666542 1234566666666777
Q ss_pred cCChHHHHHHHHHHHhhC--CChHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDW--ADDSLHVKLAQV 494 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~--~~~~~~~~la~~ 494 (561)
.|+.++|.++++++.+.. |+..++..+-..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 777777777776665543 333444444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-07 Score=67.66 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDW-------AD-DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
++.-.+.+|..++..|+|..|+.+|+.+++.. +. ..++..+|.++.++|+++.|+..++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34566788888888888888888888888753 11 27899999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 008550 523 KGLERLEKQM 532 (561)
Q Consensus 523 ~~l~~l~~~~ 532 (561)
.++..+...+
T Consensus 84 ~n~~~~~~~~ 93 (104)
T 2v5f_A 84 GNLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9988776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-05 Score=78.44 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-c---------CHhHHHHHHHHHHhccC-CChhHH
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-K---------DERGALSYAEKSIRIDE-RHIPGY 353 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~---------~~~~A~~~~~~~~~~~~-~~~~~~ 353 (561)
+......+.+.|+.++|+.+|+++.+.. +.+...|..+-.++.. + ..++|...|+++....- .+..++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344455556666666666666655432 1233344444444432 2 24556666665554321 134555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhh
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASN 430 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 430 (561)
..+...+.+.|++++|..+|+++.+. .|+..+|..+...|.+.|+.++|.+++++..+.. ..+...+..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 56666666666666666666665543 3444556666666666666666666666655432 12455555555666655
Q ss_pred cCChHHHHHHHHHHHH
Q 008550 431 ASGREKAKKFYESALR 446 (561)
Q Consensus 431 ~~~~~~A~~~~~~a~~ 446 (561)
|+.++|.++++++-+
T Consensus 189 -g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 189 -KNADKVYKTLQRLRD 203 (501)
T ss_dssp -TCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 666666666666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-07 Score=70.56 Aligned_cols=95 Identities=16% Similarity=-0.012 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHhcCCHhHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---KNDEAILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLSK 304 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~ 304 (561)
....+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | .+.++++.+|..+++.|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456677788878888888999999999999988 5668999999999988 6 557889999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHH
Q 008550 305 LVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~ 324 (561)
+++++++..|++..+.....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHH
Confidence 99999999998877665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=65.65 Aligned_cols=101 Identities=22% Similarity=0.127 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhhC-CCh--HHHHHHHHHHHHcCCHHHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD---AVSLLERYLKDW-ADD--SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-~~~--~~~~~la~~~~~~g~~~~A~ 505 (561)
.....+...|.+....++.+..+.+.+|+++.+..+... ++.+++..++.. |.. +.++.+|..+.++|+|.+|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344566777888888788889999999999999988776 999999999887 533 89999999999999999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 506 SHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 506 ~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
.+++.+++..|+|..+......+...+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998888887665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-06 Score=80.28 Aligned_cols=97 Identities=9% Similarity=0.075 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHHHHHH
Q 008550 432 SGREKAKKFYESALRL-----EPGYLG---AALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVKLAQV 494 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~la~~ 494 (561)
|++++|+..+++++++ .|+++. ++.++|.+|..+|++++|+.++++++... |++ ..+.++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 8889999999998874 566654 56788999999999999999999988753 332 678899999
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCccHHHHHHHHHH
Q 008550 495 FAATNMLQEALSHYEAALRI-----NSQNEAAKKGLERL 528 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l 528 (561)
|..+|++++|...|++|+++ .|++|.+......+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999999999999999875 68888776654444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-06 Score=62.09 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRF-------PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
.+..|..++..|+|..|+..|+.+++.. +..+.++..+|.++.++|+++.|+.+++++++..|++..+...++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444666666666666666666666542 123455556666666666666666666666666666655544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=75.64 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=78.2
Q ss_pred hhhcCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCh----HHHHH
Q 008550 428 ASNASGREKAKKFYESALRL-----EPGYL---GAALALAELHVIEGRNGDAVSLLERYLKDW-----ADD----SLHVK 490 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~ 490 (561)
... |++++|+..++++++. .|+++ .++.++|.+|..+|++++|+.++++++... |++ ..+.+
T Consensus 298 ~~~-g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 298 KAH-WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHT-TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred Hhh-ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344 8899999999998864 45554 366788999999999999999999988753 322 67889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCccHHHHHHHHHH
Q 008550 491 LAQVFAATNMLQEALSHYEAALRI-----NSQNEAAKKGLERL 528 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l 528 (561)
+|.+|..+|++++|...|++|+++ .|++|.....+..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999875 67777666554433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00024 Score=54.89 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=100.8
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++-.+...++-.+|+.++.++..+.+.. .+-..+++..++-.|+|.+|+-.+.+
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~-----------~eY~lL~~I~LyyngEY~R~Lf~L~~-------------- 58 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLPCK-----------PEYRMLMSIVLYLNGEYTRALFHLHK-------------- 58 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC---------------CTHHHHHHHHHHTTCHHHHHHHHHT--------------
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHccCC-----------hHHHhhhhhhhhhcchHhHHHHHHHh--------------
Confidence 45566778888899999999988887641 12457889999999999999876543
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----c-------------ccchh-H
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS-----K-------------ARNLQ-M 143 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~-----~-------------~~~~~-~ 143 (561)
.+.....+..+.|+.+.++|..|+..++++.. + |.+.+ .
T Consensus 59 ----------------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 59 ----------------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp ----------------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence 14456788899999999999999999887531 1 22333 3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITA 180 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 180 (561)
+..+|.++.+.|+.++|+..|......+|-.+.+-..
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 4678999999999999999999999999976655433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.2e-05 Score=57.77 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=33.4
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (561)
++.++|...|+.++......+.+|...|..-.+.|+...|.+.+.+++...|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 666666666666665555555566666666666666666666666666665554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=76.04 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=38.9
Q ss_pred CChhHHHHHHHHhHHh-----CCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHH
Q 008550 364 KRPEAAVIAFRGAQEL-----RPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS---AKALKLVGDV 426 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~ 426 (561)
|++++|+..+++++++ .|++ .++.++|.+|..+|++++|+.++++++.. .|++ ...++++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4455555555555443 1222 22445555555555555555555555432 1222 2334455555
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 008550 427 HASNASGREKAKKFYESALR 446 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~ 446 (561)
|..+ |++++|+..|+++++
T Consensus 392 ~~~q-g~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGL-ENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHT-TCHHHHHHHHHHHHH
T ss_pred HHhc-cCHHHHHHHHHHHHH
Confidence 5554 555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-05 Score=76.04 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=90.2
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++..+..+..+|+|++|+......+.+....-....+..+.++..+|.+|..+|+|++|+.++++++.+....
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~------ 362 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF------ 362 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH------
Confidence 34566778889999999999999998876555455567788999999999999999999999999999874100
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.| +..|.....++.+|.+|..+|++++|+.
T Consensus 363 --------------------------------------lg------------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 363 --------------------------------------FP------------GSHPVRGVQVMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp --------------------------------------SC------------SSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------cC------------CCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 00 1224445566777777777888888888
Q ss_pred HHHHHHhc-----CCCcHHHHHH
Q 008550 163 CYKECLRH-----CPFFIEAITA 180 (561)
Q Consensus 163 ~~~~~l~~-----~p~~~~~~~~ 180 (561)
.|++++++ .|+++.+...
T Consensus 393 ~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 393 NLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHH
Confidence 88777743 4666655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00017 Score=54.78 Aligned_cols=84 Identities=10% Similarity=-0.037 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 449 PGYLGAALALAELHVIEGRN---GDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
+..+.+.+++|+++.+..+. .+++.+++..+...|.. +.++.+|..+.++|+|.+|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678999999999998865 47999999999988855 89999999999999999999999999999999999998
Q ss_pred HHHHHHHhc
Q 008550 524 GLERLEKQM 532 (561)
Q Consensus 524 ~l~~l~~~~ 532 (561)
....+...+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.8e-05 Score=56.86 Aligned_cols=96 Identities=18% Similarity=0.032 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHhcCCHhHHH
Q 008550 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE---AILNFEKVRSID-P-YIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.....+...|.+....++.+..+.+.+|.++....+... ++..++..++.+ | ...+.++.+|..+++.|+|.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 444566667777777777788888888888888877666 888888887776 4 45577888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHH
Q 008550 304 KLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~ 324 (561)
.+++.+++..|++..+.....
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH
Confidence 888888888888876655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=55.00 Aligned_cols=83 Identities=10% Similarity=-0.034 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 451 YLGAALALAELHVIEGRN---GDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
.+.+.+++|+++.+..+. .+++.+++..++..|.. +.++.+|..+.++|+|++|+.+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 578999999999998765 47999999999988854 8999999999999999999999999999999999999888
Q ss_pred HHHHHhcc
Q 008550 526 ERLEKQMK 533 (561)
Q Consensus 526 ~~l~~~~~ 533 (561)
..+...+.
T Consensus 119 ~~Ie~ki~ 126 (134)
T 3o48_A 119 SMVEDKIQ 126 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00024 Score=54.18 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=75.2
Q ss_pred HCCCCHHHHHHHHHHHhhhcCCh------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGR------EKAKKFYESALRLEPGY--------LGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
+.|++++.|.......... |+. ++-++.|++++..-|.. ...|...|.. ...++.++|...|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~-g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKN-SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 4577777777777777776 777 67777777777655532 2344455544 455778888888888
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
++.....- .+|...|+...+.|+...|.+.+.+++...|...+....
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 77763322 678888888888888888888888888888876655443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.6e-05 Score=57.83 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~ 495 (561)
.++.+.++.|+.+.|++++|+..++..-.......+...||++|
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 35556666666666666666666655444444445555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.011 Score=44.96 Aligned_cols=79 Identities=10% Similarity=-0.045 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHH---HHHHHHHHHHhhCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKND---EAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (561)
+.++.+.+.+|+++....+.. +++..++..+...|. ..+.++.+|..+++.|+|.+|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456888899999998887644 688888888888885 4578888899999999999999999999999998876654
Q ss_pred HHH
Q 008550 322 ALS 324 (561)
Q Consensus 322 ~l~ 324 (561)
...
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.096 Score=52.93 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
.+..++..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++-+-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 355678888889999999999999999999999999999999999999999998887763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0058 Score=45.77 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKN---DEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
++.+.+.+|.++.+..+. .+++..++..++.+|. ..+.++.+|..+.+.|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 467777777777776554 3567777777776663 356677777777777777777777777777777776654433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.15 Score=47.15 Aligned_cols=91 Identities=14% Similarity=-0.014 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCC-----h--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---CCCH----HHH
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPD-----L--RSYQGLVHSYLQFSKVKEALYAAREAMKAM---PQSA----KAL 420 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~----~~~ 420 (561)
.+|.+|+..|+|.+|...+.+..+.... . +.+.....+|...+++.++...+.++.... +.+| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5666666666666666666665553211 1 334555666666666666666666654321 1222 223
Q ss_pred HHHHHHHh-hhcCChHHHHHHHHHHHH
Q 008550 421 KLVGDVHA-SNASGREKAKKFYESALR 446 (561)
Q Consensus 421 ~~l~~~~~-~~~~~~~~A~~~~~~a~~ 446 (561)
..-|..+. .. ++|..|...|-.+++
T Consensus 184 ~~~Gi~~l~~~-rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADE-RDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhc-cCHHHHHHHHHHHHh
Confidence 34455555 44 666666666666654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.019 Score=49.14 Aligned_cols=128 Identities=11% Similarity=0.091 Sum_probs=97.1
Q ss_pred HHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHH
Q 008550 116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (561)
..+++.|+.++|+..+.. +...|.+......+.++++-.|+++.|...++.+.+++|........+..+. .....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-KAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-HHHHH---
Confidence 456789999999998877 8888999999999999999999999999999999999998765543321111 00000
Q ss_pred hhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 008550 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN 248 (561)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 248 (561)
..-.-.....|.....+..|...++.+......|+.++|...-.++++.-|..
T Consensus 81 -R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 81 -RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111123344445567789999999999999999999999999998876643
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.4 Score=47.60 Aligned_cols=116 Identities=8% Similarity=-0.082 Sum_probs=58.5
Q ss_pred cCHhHHHHHHHHHHhccCCChhH----HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPG----YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
.+.+.|...+.......+-+... +..++.-....+...++...+.+.....++......++...++.|+++.|...
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 55566666665554332222211 12222223333334455555555444444333322223334455777777766
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
+..+-...+..+...+.+|..+... |+.++|..+|+++..
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~-g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLER-GREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Confidence 6554433334456666677766666 777777777776654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.41 Score=47.52 Aligned_cols=206 Identities=9% Similarity=-0.030 Sum_probs=123.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH----HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV----ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
+.......+.+.|...+.......+-+..... .++.-... +...++...+.+.....++ ......++...++.|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCC
Confidence 33334455778888888777654433433222 22222222 3356778888876654433 333334444556779
Q ss_pred ChhHHHHHHHHhHHhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (561)
+++.|...+..+..... .....+.+|.++...|+.++|...|+++.. +.+ .|-.++.... |..-. ...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lAa~~L---g~~~~-~~~--- 368 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMVAAQRI---GEEYE-LKI--- 368 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHHHHHT---TCCCC-CCC---
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHHHHHc---CCCCC-CCC---
Confidence 99999999987654322 235678899999999999999999999875 332 2323332222 32100 000
Q ss_pred HHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 008550 444 ALRLEPGY-----LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYE 509 (561)
Q Consensus 444 a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 509 (561)
....+.. .......+..+...|....|...+.......+ +.-...++.+....|.+..++....
T Consensus 369 -~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~-~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 369 -DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS-KTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp -CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0111111 01234567778899999999988888776533 3334567777788888887765443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.065 Score=49.62 Aligned_cols=91 Identities=12% Similarity=-0.027 Sum_probs=48.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCh----HH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPG--Y----LGAALALAELHVIEGRNGDAVSLLERYLKDW----ADD----SL 487 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~----~~ 487 (561)
.+|..|... |++.+|.+.+.+..+.-.. + .+++..-..+|...|++.++...+.++.... +++ .+
T Consensus 104 kL~~l~~~~-~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDT-ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 455566655 6666666665555542111 1 2344445555666666666666666654332 222 34
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 008550 488 HVKLAQVFA-ATNMLQEALSHYEAALR 513 (561)
Q Consensus 488 ~~~la~~~~-~~g~~~~A~~~~~~al~ 513 (561)
...-|..+. ..++|..|...|-.+++
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 444555555 56666666666666653
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.12 Score=40.27 Aligned_cols=117 Identities=21% Similarity=0.158 Sum_probs=73.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
++-.+|+.++-+-.- ..|..++....++.+++-.|.+..++-.+.. -+...+.+.-+.|+...+++..|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666665433222 2344445566677777778888877766543 23455666677788888888888888
Q ss_pred HHHHHh--c---------------CCCCHH-HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 306 VHDLLS--I---------------DPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 306 ~~~~~~--~---------------~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
++..+. . +|.+.+ .+..+|.++.+ |+.++|+.++.......|-.+
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 888772 1 233333 34566777777 888888888888877766543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.06 Score=56.41 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=28.7
Q ss_pred HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
.+..|++++|.+..+.+ .+...|..+|..+.+.|+++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34566666666665544 23456666666666666666666666655
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.023 Score=57.40 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=30.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
-+..+... |+++-|+++.++++...|.....|..|+.+|..+|+++.|+-.+..
T Consensus 343 Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 343 QTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34444444 5555555555555555555555555555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.44 Score=49.75 Aligned_cols=41 Identities=17% Similarity=0.012 Sum_probs=21.8
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
|+++.|.+..+. .+++..|..+|..+...++++.|+.+|.+
T Consensus 666 ~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 666 GQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp TCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555554321 23445555666666666666666555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.23 Score=47.32 Aligned_cols=203 Identities=11% Similarity=0.025 Sum_probs=112.8
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
..+..+..+. .+++..|+.....+...+....+ ......+...+...++..|+++.....+.-..............
T Consensus 19 ~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d--~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~ 95 (445)
T 4b4t_P 19 EEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASD--LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 95 (445)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHHSSSCS--TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3455566654 57888888765555444332222 22234456667778888888887766554433322111111111
Q ss_pred chhhh---cc-cCCC------------CCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc-------cc
Q 008550 83 SSRSS---LS-TSNR------------SSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-------AR 139 (561)
Q Consensus 83 ~~~~~---~~-~~~~------------~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-------~~ 139 (561)
+.+.. +. .... .....-.-..+.....+...++..+...|++.+|..++..+... ..
T Consensus 96 ~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 11110 00 0000 00000000011112456688999999999999999999886321 12
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHh---cCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLR---HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
-.+++....+++...+++.+|...++++.. ..+..+.....
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~------------------------------------ 219 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE------------------------------------ 219 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH------------------------------------
Confidence 345777889999999999999999998742 22333332222
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
.+...|..+...++|.+|...|..+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1233488888999999999999888764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.27 Score=39.34 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=23.4
Q ss_pred HhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
...|+++.|.+..+.. .+...|..+|......|+++-|..+|.+
T Consensus 16 L~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4456666665554433 1223355566666666666655555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=96.07 E-value=1.2 Score=48.34 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=82.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc----------------------
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI---------------------- 312 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------- 312 (561)
+...+...+.++-+.. .....|.++...+.+|.++...|++++|..+|+++..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555555554433 22334555555566666666666666666666554211
Q ss_pred -CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH
Q 008550 313 -DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-----PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385 (561)
Q Consensus 313 -~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (561)
....+..|..+..++.. +.++.+++....+++..+.+. ..|..+-..+...|+|++|...+...-...-....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 11113455666667777 888888888888887654332 24666777788888888887777655333323344
Q ss_pred HHHHHHHHHhcCCHH
Q 008550 386 YQGLVHSYLQFSKVK 400 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~ 400 (561)
+..+....+..|..+
T Consensus 974 Lr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhCCChh
Confidence 555555555555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.08 Score=45.36 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
....++.|+.++|+..+...++.+|.|......+...++-.|+++.|...++.+.+++|........+-.+. .
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------K 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------H
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------H
Confidence 345567899999999999999999999999999999999999999999999999999998754322211110 0
Q ss_pred HHHHHHHHHh-----cCCCCHHHHHH---HHHHHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 302 LSKLVHDLLS-----IDPSRPEVFVA---LSVLWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 302 A~~~~~~~~~-----~~~~~~~~~~~---l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
|...=.+++. ..+..+..|.. -+..... |+.++|...-.++++..|..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111111 11222333322 2222333 88888888888887776553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.41 Score=38.26 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.....|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-. +..+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 445678888888887665 5677888888888888888888888887522 334445555666665554
Q ss_pred HHHHHH
Q 008550 304 KLVHDL 309 (561)
Q Consensus 304 ~~~~~~ 309 (561)
+..+.+
T Consensus 81 kla~iA 86 (177)
T 3mkq_B 81 KMQNIA 86 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.75 E-value=8.3e-05 Score=68.88 Aligned_cols=243 Identities=14% Similarity=0.078 Sum_probs=128.5
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CC-cHHHHHH
Q 008550 104 AINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PF-FIEAITA 180 (561)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~ 180 (561)
..+.+++|..+|..++..+...+|+..+-+ .+++..+........+.|++++=+.+++-+-+.- |. +.+..+.
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIk----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445567788888888888888877765533 3344555566666677788887777776654332 21 1222233
Q ss_pred HHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------------
Q 008550 181 LAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ----------------- 243 (561)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------- 243 (561)
++. .++..+.-+. ..... ..... .-|.-++..|.|+.|.-+|..+-.
T Consensus 126 yAk----~~rL~elEef----l~~~N-----~A~iq---~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAK----TNRLAELEEF----INGPN-----NAHIQ---QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHT----SCSSSTTTST----TSCCS-----SSCTH---HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred HHh----hCcHHHHHHH----HcCCC-----cccHH---HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 332 2222111111 10000 00001 116667777777777665543311
Q ss_pred ----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 244 ----RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 244 ----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
...+++.+|.....++...+++.-|..+--.++- .|+. +..+...|...|.+++-+.+++..+.+..-+...
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 1123455555555556666655555444433332 2222 2223345566677777777777777666666677
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHHhc--cCC------ChhHHHHHHHHHHhcCChhHHH
Q 008550 320 FVALSVLWERKDERGALSYAEKSIRI--DER------HIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 320 ~~~l~~~~~~~~~~~A~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
+..+|.+|.+=++++-.++++..... -|+ ....|..+..+|..-.+++.|.
T Consensus 266 FTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77777777765555555555432210 011 1234556666666666666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.25 Score=46.21 Aligned_cols=99 Identities=11% Similarity=0.137 Sum_probs=54.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhCCHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----------------------HILLEMAKVDAIIGKNDEA 268 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------~~~~~la~~~~~~~~~~~A 268 (561)
+...+......|......|+.+.|...+.+++......+ .+...++..+...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 334444444456666667899999999999997643221 1122233444445555555
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
+..+..++..+|.+..++..+..++...|+..+|+..|+++
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.53 E-value=2.7 Score=43.54 Aligned_cols=298 Identities=10% Similarity=0.035 Sum_probs=162.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------Ch----HHHHH
Q 008550 224 CCIASNDYKGGLELFAELLQRF-PNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IM----TYMDE 288 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~----~~~~~ 288 (561)
-.+..|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++..+...+..+.. .. .+...
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3556788889988888776532 233 345556666655544 4788888887765430 11 34456
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCH--HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRP--EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
+|.++.-.++ +++...+..++..+.... .+-+.+|.++.. |+.+-....+..+.....+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 6666665555 456666666665332111 244566777777 776555555555554333322333445555567788
Q ss_pred hhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
.+.+....+.... .++. .+-..+|..|...|+...-..++..+.....++..-...+|..+... |+.+.+...+
T Consensus 540 ~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~-g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL-RDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS-SSCSSHHHHT
T ss_pred hHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc-CCHHHHHHHH
Confidence 8777666665544 3333 23556788889999976555577766653222333222333333333 5554444444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHhhCCCh----HHHHHHHHHHHHcCC-----HHHHHHHHH
Q 008550 442 ESALRLEPGYLGAALALAELHVIE--GRN-GDAVSLLERYLKDWADD----SLHVKLAQVFAATNM-----LQEALSHYE 509 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~--g~~-~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~g~-----~~~A~~~~~ 509 (561)
....+ ..++.+.+..+..+-.. |+. .+++..+.++.. ++++ .+...+|.+.....+ ...-++.+.
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 33222 24566665554444333 333 678888888754 4444 355666666555433 333444444
Q ss_pred HHHhcCCccHHHHHHHHHHH
Q 008550 510 AALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 510 ~al~~~p~~~~~~~~l~~l~ 529 (561)
+.+...-.++.+++.....+
T Consensus 695 ~~~~dk~~d~~~~fga~iAq 714 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQ 714 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHH
Confidence 44443233555555444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.29 Score=50.80 Aligned_cols=97 Identities=5% Similarity=-0.065 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKG 357 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 357 (561)
..+..+...+++.|+.++|..+|..+.+. ..-+...|..+...+.. |+.++|.+.|+++....- -+..+|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45777888889999999999988765432 23466778888888888 999999999988876432 2466777777
Q ss_pred HHHHhcCCh-hHHHHHHHHhHHhC
Q 008550 358 NLLLSMKRP-EAAVIAFRGAQELR 380 (561)
Q Consensus 358 ~~~~~~~~~-~~A~~~~~~~~~~~ 380 (561)
.++.+.|+. ++|..+++++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 788888874 67888888887763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.2 Score=51.94 Aligned_cols=97 Identities=9% Similarity=-0.099 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRI----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGL 389 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 389 (561)
...+..+...+.+ |+.++|...|..+... ..-+..+|..+...+.+.|+.++|...|+++.+. .|+..+|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467778888888 9999999999776532 2335788999999999999999999999998876 5777889999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHHC
Q 008550 390 VHSYLQFSK-VKEALYAAREAMKAM 413 (561)
Q Consensus 390 ~~~~~~~~~-~~~A~~~~~~~~~~~ 413 (561)
..++.+.|+ .++|.++++++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 999999998 478899999988765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.42 Score=44.62 Aligned_cols=109 Identities=15% Similarity=-0.025 Sum_probs=71.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEA-LYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
|......|+.+.|...+.+++.+.... .... ...+-.+ ...+++. ...+...++..+... |+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~--------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~-g~ 186 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLR--------DFQFVEPFATALVED------KVLAHTAKAEAEIAC-GR 186 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT--------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC--------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHC-CC
Confidence 333445678888888888887774322 0000 0011111 1111111 122344566677777 99
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
+.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999888654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=2.9 Score=39.78 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=117.8
Q ss_pred ccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH----HhcC
Q 008550 228 SNDYKGGLELFAELLQR------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL----KVKC 297 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 297 (561)
.|++++|++.+..+-+. .+....+...+..++...|+++...+.+....+.......+...+.... ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788888877655543 2345778888999999999999988887766555444433333222211 1122
Q ss_pred CHhH--HHHHHHHHHhcCCC-------CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC--C----hhHHHHHHHHHH
Q 008550 298 DYSK--LSKLVHDLLSIDPS-------RPEVFVALSVLWER-KDERGALSYAEKSIRIDER--H----IPGYIMKGNLLL 361 (561)
Q Consensus 298 ~~~~--A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~ 361 (561)
..+. -+...+........ ...+...++.++.. |++.+|...+.....-.-. + .+.+.....++.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 11111111111111 13456778888888 9999999998887542111 1 356777888899
Q ss_pred hcCChhHHHHHHHHhHH----hCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQE----LRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
..+++..|...++++.. ..+.. ..+...|.++...++|.+|-.+|..++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999988888642 22222 23567788888999999999999888764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.66 E-value=2.3 Score=38.06 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=78.2
Q ss_pred cchHHHHHHHHhhhhh---hhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcc
Q 008550 2 EVPKEQITALIDQGLY---DSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPK 78 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~---~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (561)
++.+...+..++.|+| =+|.+....+........ .-....+.++.-+..+++.|++.-|...-.-.++......
T Consensus 13 ~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k--~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~- 89 (336)
T 3lpz_A 13 ERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQG--NWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG- 89 (336)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-
Confidence 4567888889999998 666666555544322111 1334455566666666666666666655544444321000
Q ss_pred ccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC--------HHHHHHHHhcCCC-cccchhHHHHHHH
Q 008550 79 QNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE--------TKAAIVEMEGIPS-KARNLQMSLLMAK 149 (561)
Q Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~l~~~~~-~~~~~~~~~~l~~ 149 (561)
...+.+..-++..++..... ..+|+.+-.+... ...+++.+..+|.
T Consensus 90 -------------------------~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 90 -------------------------QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp -------------------------CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred -------------------------CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 00112233344444433332 2344444443222 2467899999999
Q ss_pred HHHhcCChhhHHHHHH
Q 008550 150 LYRNSRHNRGAVACYK 165 (561)
Q Consensus 150 ~~~~~~~~~~A~~~~~ 165 (561)
.|.+.+++.+|...|-
T Consensus 145 ~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHccCCHHHHHHHHH
Confidence 9999999999998883
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.58 E-value=1.7 Score=41.50 Aligned_cols=60 Identities=13% Similarity=-0.034 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCC----h----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD----L----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
+..+-+.|...+.+++|..+..++. .|. + ..++.+|.++...++|.+|.+++..++...|
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3444444555555555555555442 221 1 1133445555555555555555555544444
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.041 Score=52.33 Aligned_cols=150 Identities=12% Similarity=-0.001 Sum_probs=59.9
Q ss_pred HHHhhhhhhhHHhHHHHHHH---hccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhh
Q 008550 10 ALIDQGLYDSAQMLGCFLVS---SSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (561)
Q Consensus 10 ~~~~~~~~~~a~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (561)
.+++++.|+++...+..++. +...+...-+...+..||+.+.++-..|+.............+.|..-. ..+.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~----~~rt 220 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK----FLKI 220 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHH----HHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH----HHHH
Confidence 47788999998888776652 2222333345566778888888887777766544333332222211100 0000
Q ss_pred hcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC--CCc--c--cchhHHHHHHHHHHhcCChhhH
Q 008550 87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI--PSK--A--RNLQMSLLMAKLYRNSRHNRGA 160 (561)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~--~~~--~--~~~~~~~~l~~~~~~~~~~~~A 160 (561)
... .--......++..+-+.|+..+.++.|..++.+. +.. + .....++.+|+++.-+++|.+|
T Consensus 221 a~l-----------r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 221 ASL-----------KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp CCS-----------CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhc-----------ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 000 0000012457778889999999999999999984 322 1 2245668899999999999999
Q ss_pred HHHHHHHHhcCCCc
Q 008550 161 VACYKECLRHCPFF 174 (561)
Q Consensus 161 ~~~~~~~l~~~p~~ 174 (561)
..++..+++..|.+
T Consensus 290 ~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 290 NEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHTSSCSCS
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999998864
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.41 E-value=5.5 Score=41.35 Aligned_cols=261 Identities=9% Similarity=0.003 Sum_probs=139.9
Q ss_pred HHHhCCHHHHHHHHHHHHhhC-CCC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC---C---CH----HHHHHH
Q 008550 259 DAIIGKNDEAILNFEKVRSID-PYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP---S---RP----EVFVAL 323 (561)
Q Consensus 259 ~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~---~~----~~~~~l 323 (561)
....|+.++++..+.+.+... ..+ ..+.+.+|.++...+ .++...+...+.... . .+ .+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345577788888887766532 222 234555555555444 468888877775432 1 11 244456
Q ss_pred HHHHHhcCHhHHHHHHHHHHhccCCCh--hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH--HHHHHHHHHhcCCH
Q 008550 324 SVLWERKDERGALSYAEKSIRIDERHI--PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS--YQGLVHSYLQFSKV 399 (561)
Q Consensus 324 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 399 (561)
|.++....-+++...+...+..+.... .+-+.+|.++.-.|+.+.....+..+.+.. +... ...+|..+...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 666655223567777777775433211 345567888888888776666666655433 3322 34455555677777
Q ss_pred HHHHHHHHHHHHHCCCCHHHH----HHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008550 400 KEALYAAREAMKAMPQSAKAL----KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 400 ~~A~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (561)
+.+....+.... .+ ++... ..+|..|... |+...-...+..+..-..++..-...+|..+...|+.+.+...+
T Consensus 541 e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGT-Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGT-GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 766666665443 32 33333 3456667776 77544444666655432222222222333344456665555555
Q ss_pred HHHHhhCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 476 ERYLKDWADDS----LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 476 ~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
....+ ..++. +-..+|.+....++ .+++..+.+... ++++......+..+
T Consensus 618 ~~L~~-~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSK-SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGG-CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHh-cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 43333 23332 33444444433343 678888887753 56555444443333
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.55 Score=44.56 Aligned_cols=96 Identities=7% Similarity=-0.028 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC--h--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC--CCH----HHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD--L--RSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QSA----KAL 420 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~----~~~ 420 (561)
.++..+|..|...|+++.|.+.|.++...... . ..+..+..++...+++..+...+.++..... .++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45566666666666666666666666554322 2 3455666666666666666666666644321 111 223
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
...|.++... ++|..|...|-.++..
T Consensus 212 ~~~gl~~l~~-r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAV-RNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ChHHHHHHHHHHHhcc
Confidence 3444555555 6777776666666554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.51 Score=45.34 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-ADDSLHVKLAQVFAA 497 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~la~~~~~ 497 (561)
.+..+|.+.... ..+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++... |-+.+..++...+.+
T Consensus 154 ~l~~LGDL~RY~-~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYR-NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHH-HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 566778887776 778888888888888888888888888888888888888888777777654 334566666665543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.34 E-value=2.6 Score=45.77 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=19.9
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 345 IDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
..|.++...+.+|.++...|++++|..+|+++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555555566666666666666666666665
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.79 Score=44.04 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW 327 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (561)
+..+|.+......++.|..+|.++..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3444555444555555555555555555555555555555555555555555555555444444444444444433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.91 Score=43.03 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--CCCHH----HH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---SAKALKLVGDVHASNASGREKAKKFYESALRLE--PGYLG----AA 455 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~----~~ 455 (561)
++..+|..|...|++++|.+.|.++...... -...+.....++... +++..+...+.++-... ..++. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4667777777777777777777777664332 245555666666666 77777777777765431 12222 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
...|.++...++|.+|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 334555556666777666666655544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.21 E-value=1.8e-05 Score=73.15 Aligned_cols=265 Identities=11% Similarity=0.006 Sum_probs=134.4
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHH
Q 008550 139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR 218 (561)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (561)
+.+.+|..+|..++..++..+||..|-++ .+|.+..-.... .
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~---A--------------------------------- 93 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQA---A--------------------------------- 93 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHH---T---------------------------------
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHH---H---------------------------------
Confidence 45789999999999999999999988766 455543332222 2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
.+.|.+++=+.+++-+.+. ...+.+-..+..+|.+.++..+-.+++. .|+. .-....|.-++..|.
T Consensus 94 -------~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~-A~iq~VGDrcf~e~l 159 (624)
T 3lvg_A 94 -------NTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQVGDRCYDEKM 159 (624)
T ss_dssp -------TTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSS-SCTHHHHHHHHHSCC
T ss_pred -------HhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHc-----CCCc-ccHHHHHHHHHHccC
Confidence 2334444444444433322 2223333344445555554333222111 1222 223345555555555
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
|+.|.-+|..+ .-|..++.++.. |++..|++.-+++ +++.+|......+...+++.-|..+--..+
T Consensus 160 YeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 160 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp STTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 55555444221 112234444444 5555555544433 445556666666666666655544433332
Q ss_pred HhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH-hC-CC-----
Q 008550 378 ELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR-LE-PG----- 450 (561)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~-~~-p~----- 450 (561)
- .|+. +-.+...|...|.+++-+..++..+.+..-+...+..+|.+|.+ -++++-.+.++.-.. ++ |.
T Consensus 227 v-hade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK--Y~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 227 V-HADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK--FKPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp C-CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS--SCTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred c-cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 1111 11233445566666666666666666655666666666666664 344544444432111 00 11
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHH
Q 008550 451 -YLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 451 -~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
....|..+..+|..-.+++.|..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHHH
Confidence 23345666666666666665543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.46 E-value=11 Score=33.48 Aligned_cols=136 Identities=8% Similarity=-0.046 Sum_probs=83.0
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
++.+..++.-++.|+|=+|.+....+......... -....+.++.-+..+++.|++.-|...-.-.++......
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~--~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---- 87 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKS--YEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---- 87 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC----
Confidence 45677888899999988888877776654322211 344555666666777777777777666555554421110
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC--------HHHHHHHHhcCCC-cccchhHHHHHHHHHH
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE--------TKAAIVEMEGIPS-KARNLQMSLLMAKLYR 152 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~l~~~~~-~~~~~~~~~~l~~~~~ 152 (561)
...+.+..-++..++..... ..+|+.+-.+... .-.++..+..+|..|.
T Consensus 88 ----------------------~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 88 ----------------------VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp ----------------------CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred ----------------------CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 00112233334444333221 2445555554433 3468899999999999
Q ss_pred hcCChhhHHHHHH
Q 008550 153 NSRHNRGAVACYK 165 (561)
Q Consensus 153 ~~~~~~~A~~~~~ 165 (561)
+.|++.+|..+|-
T Consensus 146 ~e~~~~~A~~H~i 158 (312)
T 2wpv_A 146 EGDFVYEAERYFM 158 (312)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHH
Confidence 9999999998875
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.89 E-value=23 Score=31.47 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~ 410 (561)
..|...|+...|...+....
T Consensus 196 L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 34456666766666666544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.69 E-value=26 Score=31.34 Aligned_cols=26 Identities=19% Similarity=-0.003 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.++..+..+|..+.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555666666666666666665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 561 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-19 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-17 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-09 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 6e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.001 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.004 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-06 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-06 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.2 bits (217), Expect = 2e-19
Identities = 70/424 (16%), Positives = 145/424 (34%), Gaps = 43/424 (10%)
Query: 113 KIASCHFALGETKAAIVEMEGIPSKA-RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171
++A + G+ +AA + + N + LL++ ++ R + ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 172 PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY 231
P EA + L + + + P V A +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291
+ LQ P+ + ++ + +G+ +EA + K P
Sbjct: 124 ------YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHI 350
+ + + +++DP+ + ++ L +VL E + A++ +++ + H
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA 409
+ + + A+ +R A EL+P +Y L ++ + V EA A
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNG 469
++ P A +L + ++ + E+A + Y AL + P + A
Sbjct: 298 LRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAA--------------- 341
Query: 470 DAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529
H LA V LQEAL HY+ A+RI+ A +
Sbjct: 342 ------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Query: 530 KQMK 533
K+M+
Sbjct: 384 KEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.1 bits (196), Expect = 7e-17
Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 8/385 (2%)
Query: 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAI 105
+ L ++ ++ A Q + S S + AI
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST-LAI 60
Query: 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYK 165
+N +A + LG +++ R+ + A
Sbjct: 61 KQNP---LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 166 ECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL--DSSRWLHRYVEAQ 223
E + + + + + +
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283
A + + F + + PN + + + V D A+ + + S+ P
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKS 342
A + + + + P P+ + L + L E+ A +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 343 IRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401
+R+ H N+ E AV +R A E+ P+ ++ L Q K++E
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 402 ALYAAREAMKAMPQSAKALKLVGDV 426
AL +EA++ P A A +G+
Sbjct: 358 ALMHYKEAIRISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 3e-12
Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 4/285 (1%)
Query: 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311
+E+A + G + A + ++ +P + + + + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 312 IDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
+P E + L +++ + + + + + L +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAA--REAMKAMPQSAKALKLVGDVHAS 429
+ L + + A +A++ P A A +G V +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF-N 180
Query: 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLH 488
A +E A+ L+P +L A + L + AV+ R L +H
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
LA V+ ++ A+ Y A+ + A L K+
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 4e-09
Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 7/191 (3%)
Query: 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYRNSRHNRGAVACYKEC 167
+ + + A+ S + N + +A +Y A+ Y+
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 168 LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA 227
+ P F +A LA + P A
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKRE 317
Query: 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287
+ + + L+ + L+ FP +A V GK EA++++++ I P
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 288 EYAMLLKVKCD 298
LK D
Sbjct: 378 NMGNTLKEMQD 388
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 7e-08
Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 21/280 (7%)
Query: 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278
+ E + D + LF +Q+ P ++ + A + AI + +
Sbjct: 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82
Query: 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS----------------RPEVFVA 322
P T + A+ + + +++ D L P+
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 323 LSVLWERKDERGALSYAEKSIRI--DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380
L L ++R+ G L + AV F A +R
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202
Query: 381 PDLRSYQGLVHS-YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK 439
P+ + + ++ +EA+ A R A++ P ++ +G N +A +
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI-NLGAHREAVE 261
Query: 440 FYESALRLEPGYLGAALALAELHVIEGRN-GDAVSLLERY 478
+ AL ++ G + A+S+L +
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 2e-07
Identities = 23/228 (10%), Positives = 68/228 (29%), Gaps = 10/228 (4%)
Query: 310 LSIDPSRPEVFVALSVLWERKDERGALSYA-EKSIRIDERHIPGYIMKGNLLLSMKRPEA 368
+ + + + +W R AL +K + D + ++ +L + +
Sbjct: 13 EVLKADMTDSKLGPAEVWT---SRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQI 69
Query: 369 AVIAFRGAQELRPDLRSYQGLVHSYLQ--FSKVKEALYAAREAMKAMPQSAKALKLVGDV 426
+ + P+ Q + +L+ + L +G +
Sbjct: 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGII 129
Query: 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486
+ + K S+ + + L ++ + A S + +
Sbjct: 130 S-NKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG 186
Query: 487 -LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
+ +LA + ++ + +Y ++ + AA L++ +
Sbjct: 187 QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 6e-07
Identities = 28/256 (10%), Positives = 62/256 (24%), Gaps = 10/256 (3%)
Query: 163 CYKECLRHCPFFIEAITALAELG-ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221
Y++ L + +L K+ I+ +A + + +
Sbjct: 39 LYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQG------QAKNRANPNRSEVQANLS 92
Query: 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281
AS Y L+ + ++ + + S
Sbjct: 93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ 152
Query: 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW-ERKDERGALSYAE 340
+ + + S+ + PS + + L++L + D + Y
Sbjct: 153 HCLV--HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 341 KSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVK 400
+SI + L V G + + G V+ K+
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLS 270
Query: 401 EALYAAREAMKAMPQS 416
E K +
Sbjct: 271 PLREKLEEQFKELLFQ 286
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 49.7 bits (118), Expect = 3e-07
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPG 450
+ L ++++AL EA+KA P+ A ++ G E+A + +++L P
Sbjct: 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC--IDGDFERADEQLMQSIKLFPE 62
Query: 451 YLGAALALAELHVIEGRNGDAVSLLERY--LKDWADDSLHVKLAQVFAATNMLQEALSHY 508
YL A L L D L + + + + + + ++
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 509 EAALRINSQN 518
+ +
Sbjct: 123 LQIEELRQEK 132
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.5 bits (102), Expect = 3e-05
Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 2/128 (1%)
Query: 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280
+ + ++ + LEL E ++ P + + ++ I G + A + + P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV--FVALSVLWERKDERGALSY 338
+ + L+K ++ + + V+ ++ +D
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121
Query: 339 AEKSIRID 346
A + +
Sbjct: 122 ALQIEELR 129
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 7e-05
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 2/111 (1%)
Query: 431 ASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK-DWADDSLH 488
+ G+ ++A + A++ P + EL I+G A L + +K
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDA 539
+L + A ++ A + E K + +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV 118
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 7e-05
Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 6/137 (4%)
Query: 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322
G+ +A+ + P + + LL + D+ + + + + + P
Sbjct: 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69
Query: 323 LSVLWERKDERGALSYAEKSIRIDERHIP--GYIMKGNLLLSMKRPEAAVIAFRGAQELR 380
L L + R + + ++ + ++ NL + + E +ELR
Sbjct: 70 LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129
Query: 381 PDLRSYQGLVHSYLQFS 397
+ +G + + FS
Sbjct: 130 QE----KGFLANDTSFS 142
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.8 bits (115), Expect = 7e-07
Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 8/238 (3%)
Query: 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND--EAILNFE 273
H E ++ K L L+ P + + + + + + +
Sbjct: 74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133
Query: 274 KVRSIDPYIM-TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDE 332
+ D + + + ++ L++ + S + S L +
Sbjct: 134 RFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-- 191
Query: 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVH 391
+ R+ E + + + + + R + L + V
Sbjct: 192 -HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVE 250
Query: 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP 449
E+ +E + L+ ++ +++ + ++P
Sbjct: 251 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDP 307
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 28/305 (9%), Positives = 77/305 (25%), Gaps = 21/305 (6%)
Query: 239 AELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT----------YMDE 288
E Q+ + + ++ + ++ +P T +++
Sbjct: 19 LEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLET 78
Query: 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLW---ERKDERGALSYAEKSIRI 345
+ + L ++P + L + L + +
Sbjct: 79 EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138
Query: 346 DERHIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKEAL 403
DER+ + + P + + S+ Q ++
Sbjct: 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198
Query: 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463
R + + + ++ +A +++ FY L L E
Sbjct: 199 PQGRLPENVLLKELELVQ-----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST 253
Query: 464 IEGRNGDAVSLLERYLKDWADDSL-HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522
+ ++ L+ + L + L + +E L ++ ++ A
Sbjct: 254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313
Query: 523 KGLER 527
L
Sbjct: 314 DDLRS 318
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.2 bits (90), Expect = 0.001
Identities = 16/172 (9%), Positives = 43/172 (25%), Gaps = 3/172 (1%)
Query: 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274
Y A+ L L+ R +N + + + ++
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203
Query: 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERG 334
++ + + D S L +P + E
Sbjct: 204 PENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPLFRCELSV-EKSTVLQSELE 260
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386
+ ++ ++ + I+ L + + + F + + P +Y
Sbjct: 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.3 bits (85), Expect = 0.004
Identities = 17/194 (8%), Positives = 49/194 (25%), Gaps = 10/194 (5%)
Query: 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206
+ + +A + + + L Q + P
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS----------CLLPQLHPQPDSGP 199
Query: 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266
L + L Q ++ + L + + ++
Sbjct: 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSEL 259
Query: 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326
E+ +++ + + + + L + + L ++DP R L
Sbjct: 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319
Query: 327 WERKDERGALSYAE 340
+ ++ + YA+
Sbjct: 320 FLLENSVLKMEYAD 333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 27/236 (11%), Positives = 71/236 (30%), Gaps = 11/236 (4%)
Query: 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295
++ A +L E + +G A +F + +I P + + + L
Sbjct: 24 QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 83
Query: 296 KCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDERHIPGYI 354
++ + +L +DP+ + L+ ++ A + D +
Sbjct: 84 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143
Query: 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM- 413
+ +A + + ++ + + + S+ +A
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203
Query: 414 --PQSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPG----YLGAALALAELH 462
++ +G + S G + A ++ A+ + A L L+ L
Sbjct: 204 LAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 6e-06
Identities = 31/335 (9%), Positives = 80/335 (23%), Gaps = 23/335 (6%)
Query: 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH-----ILLEMAKVDAIIGKN 265
D+ + AQ I + L L+ P + +V G+
Sbjct: 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 67
Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
++ ++ + + L++ L + +
Sbjct: 68 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW------ETQEKAFQLI 121
Query: 326 LWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385
+ ++ + + S ++ + Q L ++
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445
S++ + A K+ + A +
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-QMTGDKAAAANWLRHTA 240
Query: 446 RLEPGYLGAAL----ALAELHVIEGRNGDAVSLLERYLKDWADDSLH-------VKLAQV 494
+ E +A ++ G A +LE ++ L + L Q+
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300
Query: 495 FAATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529
+ +A AL++ ++ + E
Sbjct: 301 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 335
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 435 EKAKKFYESALRLEPGYLGAALALAEL---HVIEGRNGDAVSLL----ERYLKDWADDSL 487
K +K ++S A + LL + K+ D +
Sbjct: 16 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYV 75
Query: 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533
LA ++AL + L+ QN AK+ ++K MK
Sbjct: 76 F-YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 5e-05
Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 7/183 (3%)
Query: 356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414
+GN L ++ A + A P + Y YL+ + ++AL R A++
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 415 QSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473
QS KA +G ++A + A L + + S
Sbjct: 70 QSVKAHFFLGQCQL--EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127
Query: 474 LLERYLKDWADDS---LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530
+ ER + ++ + A+ Q +E I +Q + ++
Sbjct: 128 IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMA 187
Query: 531 QMK 533
M
Sbjct: 188 DMD 190
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 415 QSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473
+ A K +G+ + A K Y+ A L+P + A ++ +G
Sbjct: 2 KQALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRE 59
Query: 474 LLERYLKDWADDS--------LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525
L E+ ++ ++ + ++ + ++A+ Y +L + + KK
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK-C 118
Query: 526 ERLEKQMK 533
++ EK +K
Sbjct: 119 QQAEKILK 126
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 4e-04
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 415 QSAKALKLVGDVHASNASGR-EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473
+ LK G+ S G + A + Y A++L+P + + +G A
Sbjct: 1 EQVNELKEKGNKALSV--GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 474 LLERYLKDWADDSLHV-KLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531
+ + D + A N +EA YE L+ + N K+GL+ +E +
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.83 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.51 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.45 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.43 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.4 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.01 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.81 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.63 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 98.54 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 98.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.22 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.69 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.55 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 86.88 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9e-41 Score=319.50 Aligned_cols=381 Identities=20% Similarity=0.269 Sum_probs=365.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc
Q 008550 112 YKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD 190 (561)
Q Consensus 112 ~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 190 (561)
+.+|..+.+.|++++|+..++++ ...|.++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l--------- 73 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL--------- 73 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence 35789999999999999999985 55699999999999999999999999999999999999999888777
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAIL 270 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 270 (561)
|.++...|++++|+..+..+....|.........+......+....+..
T Consensus 74 -------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (388)
T d1w3ba_ 74 -------------------------------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp -------------------------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred -------------------------------HHHhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
.........+.........+......+....+...+.+.+...|+.+.++..+|.++.. |++++|...+++++..+|++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (388)
T d1w3ba_ 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202 (388)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 008550 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (561)
+.++..+|.++...|++++|+..++++....|.. ..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887 568899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 008550 429 SNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 507 (561)
.. |++++|+..+++++...|.+...+..++.++...|++++|+..|+++++..|++ .++..+|.++...|++++|+.+
T Consensus 283 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 283 EK-GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HH-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred Hc-CCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98 999999999999999999999999999999999999999999999999999987 8999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 508 YEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 508 ~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
|+++++++|+++.++.+++.++..++
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998876
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-41 Score=320.57 Aligned_cols=382 Identities=16% Similarity=0.202 Sum_probs=322.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHH
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKA 126 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 126 (561)
+.+|..+++.|+|++|+..|+++++.+|+++ .+++.+|.++...|++++
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~-------------------------------~~~~~la~~~~~~~~~~~ 51 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNT-------------------------------GVLLLLSSIHFQCRRLDR 51 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------------------HHHHHHHHHHHHcCCHHH
Confidence 4689999999999999999999999987554 578999999999999999
Q ss_pred HHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCC
Q 008550 127 AIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205 (561)
Q Consensus 127 A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (561)
|+..+++ +...|.++.++..+|.++...|++++|+..+..+....|.........
T Consensus 52 A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------------------ 107 (388)
T d1w3ba_ 52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL------------------------ 107 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccc------------------------
Confidence 9999998 455699999999999999999999999999999999999888776655
Q ss_pred CCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
+......+....+...........+.........+......+....+...+.+.+...|.+..+
T Consensus 108 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (388)
T d1w3ba_ 108 ----------------AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp ----------------HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ----------------cccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHH
Confidence 4444555666677777777777777777777777888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
+..+|.++...|++++|...++++++.+|+++.++..+|.++.. |++++|+..++++....|.....+..+|.++...|
T Consensus 172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (388)
T d1w3ba_ 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCC
Confidence 88888888888888888888888888888888888888888888 88888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (561)
++++|+..|+++++.+|++ .++..+|.++...|++++|+..++.++...|.++..+..+|.++... |++++|+..|++
T Consensus 252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRK 330 (388)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC-CCHHHHHHHHHH
Confidence 8888888888888888876 56788888888888888888888888888888888888888888887 888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 444 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
+++.+|+++.++..+|.++...|++++|+..|+++++++|++ .++..+|.+|.++||
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 888888888888888888888888888888888888888876 788888888887775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.7e-29 Score=229.33 Aligned_cols=268 Identities=16% Similarity=0.124 Sum_probs=194.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
|.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++...|+
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 45688888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
+++|+..+++++...|.....+........... ..........+...+.+.+|+..+.+++.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG------------------LGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcc------------------cccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888876543221111110000 00001111223344556677777777777
Q ss_pred hCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 379 LRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 379 ~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
.+|+. .++..+|.++...|++++|+..+++++..+|+++.++..+|.++... |++++|+.+|+++++.+|+++.++
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccc-ccchhHHHHHHHHHHHhhccHHHH
Confidence 77764 34677788888888888888888888888888888888888888877 888888888888888888888888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh------------HHHHHHHHHHHHcCCHHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD------------SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~la~~~~~~g~~~~A~ 505 (561)
..+|.++...|++++|+..|++++++.|++ .+|..++.++...|+.+.+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888888888888776653 24455666666666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7e-28 Score=223.18 Aligned_cols=274 Identities=13% Similarity=-0.010 Sum_probs=216.6
Q ss_pred HHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 175 IEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE 254 (561)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 254 (561)
....+..+..+...|++.++.....+.....|. ....++..|.++...|++++|+..|.++++.+|+++..+..
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 92 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 92 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccc
Confidence 355688899999999999999999999876653 34455666999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhH
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERG 334 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 334 (561)
+|.++...|++++|+..+++++...|................ .........+.....+.+.+
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA------------------GLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------------CTTHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhc------------------ccccchhhHHHHHHhhHHHH
Confidence 999999999999999999999999998755432211111000 00011111122222377888
Q ss_pred HHHHHHHHHhccCCC--hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 335 ALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 335 A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
|+..+.+++..+|.. +.++..+|.++...|++++|+..|++++..+|++ .+|..+|.++...|++++|+..|+++++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 999999999988875 4667889999999999999999999999999987 6689999999999999999999999999
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH-----------HHHHHHHHHHcCChHHHHH
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA-----------ALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-----------~~~la~~~~~~g~~~~A~~ 473 (561)
.+|+++.++..+|.++... |++++|+..|+++++++|++..+ +..++.++...|+.+.+..
T Consensus 235 ~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 235 LQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HhhccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999998 99999999999999998887553 3445666666666654443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.2e-24 Score=196.66 Aligned_cols=220 Identities=11% Similarity=0.075 Sum_probs=180.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC-HhHHHHHHHHHHhcCCCCHHHH
Q 008550 242 LQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD-YSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...|. +++|+..++++++.+|++..+|
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 344666678888888899889999999999999999999999999999988888764 8889999999999999999999
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCC
Q 008550 321 VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK 398 (561)
Q Consensus 321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 398 (561)
..+|.++.. |++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+ .+|..+|.++...+.
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence 999888888 888999999999999999888888889988888888888888888888888887 568888888777665
Q ss_pred ------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 008550 399 ------VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHV 463 (561)
Q Consensus 399 ------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~ 463 (561)
+++|+..+.++++.+|++..+|..++.++.. ....++...+.+++++.|+. +.++..++.++.
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh--cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5788888888888888888888888887664 34677788888887777654 344445555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.9e-23 Score=190.31 Aligned_cols=227 Identities=11% Similarity=0.051 Sum_probs=158.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK-NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
+...|.++...+.+++|+.+++++++.+|++..+|..+|.++...|+ +++|+..++++++.+|++..+|..+|.++...
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh
Confidence 33446677777777777777777777777777777777777777664 77777777777777777777777777777777
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC------hhHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR------PEAA 369 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A 369 (561)
|++++|+..++++++.+|++..+|..+|.++.. |++++|+..++++++++|.+..+|..+|.++...+. +++|
T Consensus 126 ~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 126 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 777777777777777777777777777777777 777777777777777777777777777777766665 4677
Q ss_pred HHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhh-cCChHHHHHHHHHHH
Q 008550 370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--AKALKLVGDVHASN-ASGREKAKKFYESAL 445 (561)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~ 445 (561)
+..+.++++.+|++ .+|..++.++...| .+++...++.+++..|+. +.++..++.++... .+..+.+...+.+++
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 284 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777777776 44666766654433 466777777777766643 44444455444321 133344444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=9.7e-27 Score=216.03 Aligned_cols=280 Identities=8% Similarity=-0.049 Sum_probs=230.7
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc
Q 008550 150 LYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN 229 (561)
Q Consensus 150 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (561)
.....+..++|+.++++++..+|++..+|.....+.... ...+..+...|
T Consensus 38 ~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l------------------------------~~~~~~~~~~~ 87 (334)
T d1dcea1 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHL------------------------------ETEKSPEESAA 87 (334)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------------------------HTTSCHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH------------------------------hhhcchHHHHH
Confidence 333444568999999999999999999987764442211 11144566778
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCCCChHHH-HHHHHHHHhcCCHhHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK--NDEAILNFEKVRSIDPYIMTYM-DEYAMLLKVKCDYSKLSKLV 306 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~ 306 (561)
++.+|+.+++++++.+|+++.++..+|.++...++ +++|+..+++++..+|.+..++ ...|.++...+.+++|+..+
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence 89999999999999999999999999999888765 8999999999999999998876 46778888899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-H
Q 008550 307 HDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R 384 (561)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 384 (561)
++++..+|.+..+|..+|.++.. |++++|+..+.+++...|.....+ ..+...+..+++...+.+++...|.. .
T Consensus 168 ~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~ 243 (334)
T d1dcea1 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLF 243 (334)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhh
Confidence 99999999999999999999999 999999888888888777654433 33455677788888888888888876 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
.+..++.++...|++.+|+..+.+++..+|.+..++..+|.++... |++++|+.+|+++++++|.+...|..++..+..
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 4677788888888888899988888888888888888899888887 888999999999999988888888888777664
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=1.2e-24 Score=201.88 Aligned_cols=269 Identities=11% Similarity=0.003 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
++|+.++++++..+|++..+|..++.++...+.. +..+...|++.+|+.+++++++
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~------------------------~~~~~~~~~~~~al~~~~~~l~ 101 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETE------------------------KSPEESAALVKAELGFLESCLR 101 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT------------------------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhh------------------------cchHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665555554433220 0011222234455555555555
Q ss_pred cCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHhccCCChhHH-HHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHH
Q 008550 312 IDPSRPEVFVALSVLWER-K--DERGALSYAEKSIRIDERHIPGY-IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSY 386 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 386 (561)
.+|+++.+|..+|.++.. + ++++|+..+++++..+|.+..++ ...|.++...+.+++|+..++++++.+|.+ .+|
T Consensus 102 ~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~ 181 (334)
T d1dcea1 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (334)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHH
Confidence 555555555555554444 2 34555555555555555555443 234455555555555555555555555554 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
..+|.++...|++++|+..+++++...|.....+.. +... +..+++...+.+++...|.+...+..++.++...|
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~~~l-~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 256 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN----AFFT-DPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ 256 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH----HHHH-CSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHH----HHHh-cchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence 555555555555555555555555554443333322 2233 55666777777777777777777777777777778
Q ss_pred ChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 467 RNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
++.+|+..+.+++..+|.. .++..+|.++...|++++|+++|+++++++|.+...|..|+...
T Consensus 257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 8888888888888777766 77788888888888888888888888888888777777775543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=5.7e-21 Score=170.06 Aligned_cols=221 Identities=11% Similarity=0.065 Sum_probs=160.3
Q ss_pred cCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHH
Q 008550 229 NDYKGGLELFAELLQRFP----NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK 304 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 304 (561)
.+.+.|+..+++++...+ ....+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 455677777777776533 3456888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh
Q 008550 305 LVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (561)
.|+++++.+|+++.++..+|.++.. |++++|+..++++++.+|.+......++..+...+....+...........+..
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 9999999999999999999988888 999999999999999988888887777777777776665555555544444433
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 384 RSYQGLVHSYL----QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 384 ~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
..+. +...+. ..+..+.+...+.......|....+++.+|.++... |++++|+.+|++++..+|++
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCTT
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCC
Confidence 2221 111111 122234444444444455555566666677777666 77777777777777766655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.4e-20 Score=167.54 Aligned_cols=218 Identities=12% Similarity=0.003 Sum_probs=149.4
Q ss_pred HhHHHHHHHHHHhcCCC----CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 299 YSKLSKLVHDLLSIDPS----RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.+.++..+++++...+. .+.+++.+|.+|.. |++++|+..|++++.++|+++.++..+|.++...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 44555555666654332 24577778888887 88888888888888888888888888888888888888888888
Q ss_pred HHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+++++.+|++ .++..+|.++...|++++|+..++++++.+|++......++.+.... +....+...........+...
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQW 173 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHSCCCST
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh-hhHHHHHHHHHHhhccchhhh
Confidence 8888888876 56788888888888888888888888888888877777777776665 555444444444444444332
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 453 GAALALAELHVI----EGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 453 ~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
. + .+...+.. .+....+...+.......|.. .+++.+|.++...|++++|+.+|++++..+|++.
T Consensus 174 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 174 G-W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp H-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred h-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 2 1 11122111 122333333333344444444 6788899999999999999999999999998764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7.8e-19 Score=164.37 Aligned_cols=275 Identities=13% Similarity=0.016 Sum_probs=199.7
Q ss_pred ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHH
Q 008550 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (561)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (561)
+..+++....|.++...|++++|+..|++++...|.+....... .
T Consensus 9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~-----------------------------------a 53 (366)
T d1hz4a_ 9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV-----------------------------------A 53 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHH-----------------------------------H
T ss_pred chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHH-----------------------------------H
Confidence 34466778889999999999999999999999998764432211 1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--------Ch
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY--------IM 283 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~ 283 (561)
+...|.++...|++++|+..|++++...|.. ..++..++.++...|++..|...+.+++...+. ..
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 2334889999999999999999998754322 356678888999999999999999988875322 12
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC-------h
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIRIDERH-------I 350 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~ 350 (561)
..+..+|.++...|+++.+...+.++....+.. ...+...+..+.. +++..+...+.++....+.. .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 456677888888889988888888888765543 3355666666666 88888888888777654332 2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CCCCHHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKA------MPQSAKA 419 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~ 419 (561)
.++..++.++...|++++|...+++++...|.. ..+..+|.++...|++++|...+++++.. .|....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 345667777788888888888888877765543 23566777888888888888888777643 2334556
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
+..+|.++... |++++|+..+++++++.
T Consensus 294 ~~~la~~~~~~-g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 294 LLLLNQLYWQA-GRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHh
Confidence 77777777776 77777777777777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=9.2e-19 Score=163.87 Aligned_cols=264 Identities=15% Similarity=0.061 Sum_probs=155.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVF 320 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~ 320 (561)
....|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|+..+++++...+.. ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33334444444444444444444444444331 233334444444444444444444444332211 1233
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHhccCC--------ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh------HH
Q 008550 321 VALSVLWER-KDERGALSYAEKSIRIDER--------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RS 385 (561)
Q Consensus 321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 385 (561)
..++.++.. |++..+...+.+++...+. ....+..+|.++...|+++.+...+.++....+.. .+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 444455555 5555555555555543211 12345566777777777777777777777664432 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC----HHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGA 454 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~ 454 (561)
+...+..+...+++.++...+.++....+.. ..++..++.++... |++++|...+++++...|.+ ...
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-GDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5566777777777777777777766643321 34556667777776 88888888888877766554 234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhC------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDW------ADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
+..+|.++...|++++|...+++++... |.. .++..+|.+|...|++++|.+.+++++++.+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 5667888888888888888888877542 111 5777888888888888888888888887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=4.3e-16 Score=141.36 Aligned_cols=192 Identities=11% Similarity=0.015 Sum_probs=166.7
Q ss_pred cCHhHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHH
Q 008550 330 KDERGALSYAEKSIRI-DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAA 406 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~ 406 (561)
+..++|...|+++++. .|.+...|...+.+....|+++.|...|++++...|.+ ..|...+......|+++.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567888899999874 77888888899999999999999999999999888865 45888889999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-
Q 008550 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD- 485 (561)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 485 (561)
++++...|.+...+...+.......|+.+.|..+|++++...|.++..+..++..+...|+++.|..+|++++...|.+
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 9999999999999888887755444889999999999999999999999999999999999999999999999976532
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 486 ----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 486 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
.+|..........|+.+.+.++++++.+..|+....
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 578888888889999999999999999999877543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=3.3e-15 Score=135.42 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------------CHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHh
Q 008550 231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIG--------------KNDEAILNFEKVRSI-DPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------------~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 295 (561)
.+.+..+|++++...|.++.+|+..+..+...+ ..++|...|+++++. .|.+...|..++.+...
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 345677888999888999988888777654432 234555555555543 45555555555555555
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.|+++.|..+|++++...|.+.. +|...+.+... |+++.|...|+++++..|.+...+...+....
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~------------ 179 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY------------ 179 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH------------
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH------------
Confidence 55555555555555555554432 45555555555 55555555555555555555544444443322
Q ss_pred HHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH-
Q 008550 374 RGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL- 452 (561)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~- 452 (561)
...|+.+.|..+|++++..+|+++..|...+..+... |+++.|..+|++++...|.++
T Consensus 180 --------------------~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~-g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 180 --------------------YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp --------------------HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGG
T ss_pred --------------------HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChH
Confidence 2234555555555555555555555555555555555 555555555555555544332
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 453 ---GAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 453 ---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
..|..........|+.+.+.++++++.+..|.
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 24444455555555655555555555555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.3e-17 Score=159.88 Aligned_cols=228 Identities=11% Similarity=-0.043 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 008550 233 GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI 312 (561)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 312 (561)
+|+++|+++++..|+.+.++..+|.++...|++.+| |++++..+|+........+.+. ...+..++..+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999886 8999999997766543333222 22356778888887765
Q ss_pred CC--CCHHHH-HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHH
Q 008550 313 DP--SRPEVF-VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQG 388 (561)
Q Consensus 313 ~~--~~~~~~-~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 388 (561)
.. +..... ..++.+... +.|+.++..+.+++.++|.+...+..+|..+...|++++|+..+.+++..+|. .++..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~ 157 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-HCLVH 157 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH-HHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-HHHHH
Confidence 43 222222 234455555 89999999999999999999999999999999999999999999999887653 57889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
+|.++...|++++|+.+|++++..+|+++.+++.+|.++... |+..+|+.+|.+++...|..+.++.+++.++.+..+
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~-~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK-GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT-TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998 999999999999999999999999999998876543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.1e-16 Score=116.75 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=101.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++++|.++.++..+|.++..+|+
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+++|+..|+++++.+|+++.++..++.+..
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999888887643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.8e-16 Score=118.27 Aligned_cols=110 Identities=22% Similarity=0.180 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAAT 498 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~ 498 (561)
+...|..+... |++++|+..|.++++.+|+++.++..+|.++..+|++++|+..++++++..|++ .+|+.+|.++..+
T Consensus 6 l~~~g~~~~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 6 LKEKGNKALSV-GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 45567777777 888888888888888888888888888888888888888888888888888776 7888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 499 NMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
|++++|+..|+++++++|+++.++..+.++..
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 88888888888888888888888888887764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.2e-15 Score=136.89 Aligned_cols=197 Identities=13% Similarity=0.041 Sum_probs=127.6
Q ss_pred HHHHHh-cCHhHHHHHHHHHHhccC------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHH
Q 008550 324 SVLWER-KDERGALSYAEKSIRIDE------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGL 389 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l 389 (561)
|.+|.. +++++|+..|.+++.+.+ .....+..+|.+|...|++++|+..|++++++.+.. .++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 344444 455555555555444321 112456666777777777777777777776653321 235667
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH-------HHH
Q 008550 390 VHSYLQ-FSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-------GAA 455 (561)
Q Consensus 390 ~~~~~~-~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~ 455 (561)
|.++.. .|++++|+..|++++++.+.. ..++..+|.++... |++++|+..|++++...|.++ ..+
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~-g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc-ChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 777654 578888888888877653321 44577788888887 888888888888888776653 345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCccHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFAA--TNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
...+.++...|++..|...++++.+.+|.. .....+..++.. .+.+.+|+..|.++.+++|.....
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~ 276 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 667778888888888888888888877642 234455555544 356889999998888887654444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.9e-17 Score=159.10 Aligned_cols=227 Identities=9% Similarity=0.006 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhcc
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRID 346 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~ 346 (561)
+|+++|++++++.|+..+++..+|.++...|++.+| |++++..+|+........+.++ +..+..+++.+++..+..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-NHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 566666666666666666666666666666666554 5566655554433322222111 112233333443333222
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-H-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVG 424 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 424 (561)
.. ++. . ....++.+....+.|+.|+..+.+++..+|++...+..+|
T Consensus 80 ~~--------------------------------~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg 127 (497)
T d1ya0a1 80 AN--------------------------------PNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLG 127 (497)
T ss_dssp SC--------------------------------TTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred cC--------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhH
Confidence 11 111 1 1112333444455566666666666666666667777777
Q ss_pred HHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHH
Q 008550 425 DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~ 503 (561)
..+... |+.++|...+.+++..+| ..++..+|.++...|++++|+.+|+++++..|++ ..+..+|.++...|++.+
T Consensus 128 ~~~~~~-~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~ 204 (497)
T d1ya0a1 128 IISNKQ-THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT 204 (497)
T ss_dssp ----------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhC-CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHH
Confidence 777666 777777777776666554 2456667777777777777777777777777766 677777777777777777
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|+.+|.+++..+|..+.++.+|..+....
T Consensus 205 A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 205 TIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.7e-15 Score=124.73 Aligned_cols=138 Identities=14% Similarity=0.026 Sum_probs=81.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 468 (561)
.|..+...|++++|++.|.++ .|.++.+++++|.++... |++++|+.+|+++++++|+++.++.++|.++.++|++
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~-g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 344555555555555555432 334455555555555554 5555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhhCC----------------C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHH
Q 008550 469 GDAVSLLERYLKDWA----------------D-DSLHVKLAQVFAATNMLQEALSHYEAALRINSQN--EAAKKGLERLE 529 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~----------------~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~l~ 529 (561)
++|+..|++++...+ . .++++.+|.++...|++++|.+.+.+++++.|+. ..+...+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 555555555554321 1 1567889999999999999999999999887764 34444444444
Q ss_pred H
Q 008550 530 K 530 (561)
Q Consensus 530 ~ 530 (561)
.
T Consensus 167 ~ 167 (192)
T d1hh8a_ 167 K 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.3e-15 Score=120.56 Aligned_cols=121 Identities=9% Similarity=0.034 Sum_probs=105.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
+..+|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|.+..++..+|.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCHhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGALSY 338 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A~~~ 338 (561)
++++|+..+++++...|+++.++..++.+... +.+++|+..
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888887766533 445566544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1e-14 Score=121.20 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
.++.+|..+...|+|++|++.|.++ .|.++.+++.+|.+|..+|++++|+..|+++++++|+++.++..+|.++..+
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 4566799999999999999999864 5677899999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC
Q 008550 297 CDYSKLSKLVHDLLSIDPSR----------------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (561)
|++++|+..|++++...+.+ .++++.+|.++.. |++++|+..+.+++.+.|..
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999998765544 2455666666666 66666666666666666653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=1.8e-15 Score=135.82 Aligned_cols=172 Identities=13% Similarity=0.002 Sum_probs=86.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHhcCCHhHH
Q 008550 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY------IMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A 302 (561)
++|++|..+|.++ |.+|...|++++|+..|.+++++.+. ....+..+|.+|...|++++|
T Consensus 31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3456666555543 67778888888888888888775321 124556666666666666666
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHH-h-cCHhHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhH
Q 008550 303 SKLVHDLLSIDPSR------PEVFVALSVLWE-R-KDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 303 ~~~~~~~~~~~~~~------~~~~~~l~~~~~-~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 368 (561)
+..+++++.+.+.. ..++..+|.++. . |++++|+.+|++++.+.+.. ..++..+|.++...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 66666665543332 223444444442 2 55555555555554432211 1223444444444444444
Q ss_pred HHHHHHHhHHhCCChH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 369 AVIAFRGAQELRPDLR--------SYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 369 A~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
|+..|++++...+... .+...+.++...|++..|...++++.+.+|
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4444444444433220 123334444444444444444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.5e-15 Score=118.41 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
.+...|..+++.|++++|+..|+++++.+|+++.+|..+|.++... |++++|+..|+++++++|+++.++..+|.++..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc-cccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3667788888888888888888888888888888888888888887 888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHH
Q 008550 465 EGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA 496 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~ 496 (561)
+|++++|+..+++++...|++ .++..++.+..
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 888888888888888888876 56666665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.4e-14 Score=109.33 Aligned_cols=111 Identities=21% Similarity=0.081 Sum_probs=97.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCh---HHHHHHHHHH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLLERYLKDWADD---SLHVKLAQVF 495 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~---~~~~~la~~~ 495 (561)
.++..+... +++++|.+.|++++..+|.++.+++++|+++.+.+ ++++|+..|++++...|.+ .+++.+|.+|
T Consensus 4 ~l~n~~~~~-~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSV-EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH-HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 455566666 89999999999999999999999999999998755 4557999999999988765 5899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 496 AATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+|++++|+.+|+++++++|++..+...+..+...++
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999998887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=8.6e-15 Score=123.82 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 381 PDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
|+...+...|..++..|++++|+..|++++..+|+++.+|..+|.+|... |++++|+.+|+++++++|+++.+|+.+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~-~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhh-hhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 44445566677777777777777777777777777777777777777776 77777777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
++..+|++++|+..|++++++.|+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 777777777777777777776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=3.5e-14 Score=119.98 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K 330 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 330 (561)
+...|..++..|+|++|+..|++++.++|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++.. |
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444444 4
Q ss_pred CHhHHHHHHHHHHhccC
Q 008550 331 DERGALSYAEKSIRIDE 347 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~~~ 347 (561)
++++|+..|++++.+.|
T Consensus 87 ~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 87 SYDEAIANLQRAYSLAK 103 (201)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.51 E-value=1e-13 Score=103.59 Aligned_cols=93 Identities=24% Similarity=0.204 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
++.+|.++...|++++|+..|++++..+|+++.+|..+|.++... |++++|+.+|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhh-hhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 567788888888888888888888888888888888888888887 8888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHH
Q 008550 466 GRNGDAVSLLERYL 479 (561)
Q Consensus 466 g~~~~A~~~~~~~~ 479 (561)
|++++|++.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.4e-13 Score=109.45 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=78.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 418 (561)
..|..++..|++++|+..|++++...|.. .++.++|.+|.+.|++++|+..+++++..+|+++.
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~ 97 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 97 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchh
Confidence 34444555555555555555554443321 23566777888888888888888888888888888
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
+++.+|.++... |++++|+..|+++++++|+++.+...++.+....+...+
T Consensus 98 a~~~~g~~~~~~-g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 98 GLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 888888888888888888877777777777666554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.8e-13 Score=109.95 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
+...|..++..|++++|+..|++++...|...... ..-...... + ...++.++|.+|.+.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~-~-----~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQA-L-----RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHH-H-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhch-h-----HHHHHHHHHHHHHhh
Confidence 55778888888888888888888888776541100 000000000 0 012334455555555
Q ss_pred CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 466 GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
|++++|+..+++++..+|++ .+++.+|.++..+|++++|+..|+++++++|+|+.+...+..+...
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55555555555555555544 4555555555555555555555555555555555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=2.1e-11 Score=107.48 Aligned_cols=229 Identities=12% Similarity=0.076 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (561)
||.+++.+|..+...+++.+|+++|+++.+. .+..+++.+|.++.. ..++..|...++.+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 3566666666666666666666666666543 355666666666655 44555666665555442 244555555
Q ss_pred HHHHHh-----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCC
Q 008550 324 SVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSK 398 (561)
Q Consensus 324 ~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 398 (561)
|.++.. .+.+.|...++++....+ ..+...++..+..... ....
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~-----------------------------~~~~ 125 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKV-----------------------------VTRD 125 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSS-----------------------------SCCC
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCc-----------------------------ccch
Confidence 544432 344455555555544322 2333333333332110 1223
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDA 471 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A 471 (561)
...+...+.+... +.+...+..+|.++... ..+...+..+++.+.+ +.++.+.+.+|.++.. ..++++|
T Consensus 126 ~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 126 FKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred hHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhh
Confidence 3334444433322 23444455555555431 1333455555555443 2345555566655554 3456666
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 008550 472 VSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINS 516 (561)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 516 (561)
+.+|+++.+.. .+.+++.+|.+|.. ..++++|.++|+++.+..+
T Consensus 202 ~~~~~~aa~~g-~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 202 LARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhHhhhhccc-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 66666665542 23455566666654 2356666666666665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.6e-13 Score=104.26 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
..+|..++..|+|++|+.+|+++++.+|+++.++.++|.++..+ |++++|+..++++++++|.++..+..+|.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~~~~~~~~~~~a~------ 80 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAK------ 80 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc-CchHHHHHHHHHHHHhCcccHHHHHHHHH------
Confidence 34555555556666666666666666665566666666666655 66666666666665555555444444443
Q ss_pred ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 467 RNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
++..+|.++...+++++|+.+|++++..+|+ +.+...+..+.+.+
T Consensus 81 --------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l 125 (128)
T d1elra_ 81 --------------------AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125 (128)
T ss_dssp --------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 3556778888888888888888888887764 45555555555433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.49 E-value=1.9e-13 Score=102.11 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
+..|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34488888899999999999999999999999999999999999999999999999999999988888889999999998
Q ss_pred HhHHHHHHHHHH
Q 008550 299 YSKLSKLVHDLL 310 (561)
Q Consensus 299 ~~~A~~~~~~~~ 310 (561)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=5.6e-13 Score=105.95 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
+...|..++..|++.+|+..|++++...|... ...+.........+. ..++.++|.+|.++
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~--------------~~~~~~~~~~~~~~~-----~~~~~Nla~~~~~l 80 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTE--------------EWDDQILLDKKKNIE-----ISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT--------------TCCCHHHHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh--------------hhhhHHHHHhhhhHH-----HHHHhhHHHHHHHh
Confidence 56678888888888888888888887655321 111111111111111 24677899999999
Q ss_pred CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 466 GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
|++++|+..++++++.+|.+ .+|+.+|.++..+|++++|+.+|+++++++|+|+.+...+..+...++
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987 899999999999999999999999999999999999999998887664
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.45 E-value=6.8e-11 Score=104.08 Aligned_cols=211 Identities=19% Similarity=0.172 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCChHHHHHHH
Q 008550 316 RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPDLRSYQGLV 390 (561)
Q Consensus 316 ~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 390 (561)
+|.+++.+|..+.. +++.+|+++|+++.+. .+..+++.+|.+|.. ..++..|...++.+.... ...+...++
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccchhhccc
Confidence 45667777776666 7777777777777553 466777777777765 557777777777765543 224455566
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 391 HSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 391 ~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
.++.. .++.+.|...++.+....+ ..+...++..+... ......|...+.+... +.+...+..+|.++.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhc
Confidence 55543 4577888888888877544 55566666666542 1445777777777655 456788999999998
Q ss_pred H----cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCC
Q 008550 464 I----EGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 464 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 535 (561)
. ..+...+..+++.+.+. .+..+.+.+|.+|.. ..++++|+.+|+++.+. +++.+...|+.++..-.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~-g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~ 230 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGV 230 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSS
T ss_pred cCCCcccccccchhhhhccccc-cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCC
Confidence 7 45677888888887754 345789999999987 67999999999999887 5788999999999764333
Q ss_pred C
Q 008550 536 D 536 (561)
Q Consensus 536 ~ 536 (561)
.
T Consensus 231 ~ 231 (265)
T d1ouva_ 231 T 231 (265)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.45 E-value=9.7e-13 Score=104.56 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (561)
...|..++..|+|.+|+..|.+++...+.. ..+.++|.+|.++|++++|+..++++++.+|++
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~ 100 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence 334555555555555555555555443321 235667777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
..+++.+|.++... |++++|+..|+++++++|+++.+...+..+..+.
T Consensus 101 ~ka~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 101 VKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777 7777777777777777777777776666655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.44 E-value=2.1e-12 Score=104.51 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (561)
+...|..++..|++.+|+..|++++...|.. ..+.++|.+|..+|++++|+..+++++.++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 4455666666666666666666655542221 135667888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNG 469 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 469 (561)
+.+++.+|.++... |++++|+..|++++.++|+++.+...++.+....+.+.
T Consensus 98 ~~a~~~~~~~~~~l-~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 98 EKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence 88888888888877 88888888888888888888777777777766655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.43 E-value=6.4e-13 Score=108.01 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
+...|..+...|++.+|+..|++++...+.. .+...........|....++.++|.++.++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-------------------RAAAEDADGAKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhh
Confidence 3456777778888888888888777542210 111111222344566677788888888888
Q ss_pred CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 466 GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
|++++|+..++++++.+|+. .+|+.+|.++..+|++++|+..|+++++++|+++.+...+..+...+.
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 88888888888888888877 788889999999999999999999999999999888888888876653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.43 E-value=3.1e-12 Score=103.58 Aligned_cols=126 Identities=7% Similarity=0.099 Sum_probs=97.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---------------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
.-.|..++..|+|.+|+..|++++...|.. ..++..+|.||..+|++++|+..++++++++|.++
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~ 98 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 98 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH
Confidence 345999999999999999999999764432 23456678888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh-HHHHHHHHHHh
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIR 344 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~ 344 (561)
.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+... +.+. ...+.|.++++
T Consensus 99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888887777665 4333 34444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-12 Score=98.13 Aligned_cols=107 Identities=14% Similarity=-0.005 Sum_probs=78.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhc
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---KNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVK 296 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 296 (561)
+..+...+++++|.+.|++++..+|+++.+++.+|.++...+ ++++|+..|++++..+|.+ ..+++.+|.+|...
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~ 85 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 556667778888888888888888888888888888877644 3456788888887777654 34677788888888
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
|++++|+.+|+++++++|++..+...++.+..
T Consensus 86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 86 KEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 88888888888888888877777766665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.40 E-value=2.4e-12 Score=104.48 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCCC----------------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPD----------------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (561)
...|..++..|++.+|+..|.++++..+. . ..+.++|.++.++|++++|+..++++++++|++
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 110 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence 34566666666666666666666543221 1 123444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
+.+++.+|.++... |++++|+..|+++++++|++..+...++.+..
T Consensus 111 ~~a~~~~g~~~~~l-~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 111 TKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444444444444 44444444444444444444444444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.39 E-value=8.9e-13 Score=103.36 Aligned_cols=116 Identities=19% Similarity=0.124 Sum_probs=77.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---------cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---------ASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
+.+.+.+++|+..|+++++.+|+++.+++.+|.++... .+.+++|+..|+++++++|+++.+++++|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 44566677888888888888888888888888777643 144577888888888888888888888888877
Q ss_pred HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 464 IEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.+|+.. +. .....+.+++|.++|+++++++|++...+..|+...+
T Consensus 87 ~~g~~~-------------~~---------~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 87 SFAFLT-------------PD---------ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HHHHHC-------------CC---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred Hcccch-------------hh---------HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence 665321 00 0111123566666677777777777666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.38 E-value=1.6e-12 Score=101.95 Aligned_cols=74 Identities=15% Similarity=-0.070 Sum_probs=60.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 225 CIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG----------KNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
+-+.+.|++|+..|+++++.+|+++.+++.+|.++...+ .+++|+..|+++++++|+++.+++.+|.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 445678999999999999999999999999999988654 4567888888888888888888888887777
Q ss_pred hcCC
Q 008550 295 VKCD 298 (561)
Q Consensus 295 ~~~~ 298 (561)
.+|+
T Consensus 87 ~~g~ 90 (145)
T d1zu2a1 87 SFAF 90 (145)
T ss_dssp HHHH
T ss_pred Hccc
Confidence 6553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1e-11 Score=95.08 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.+|..++..|+|++|+.+|.++++++|+++.++..+|.++..+|++++|+..++++++++|.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence 344444444444444444444444444444444444444444444444444444444444333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.2e-11 Score=87.30 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
++-.+.+|.++.+.|++.+|+.+|+++++..|.. .++..+|.++.+.|++++|+.+|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 4556788888888888888888888888765432 68999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 008550 524 GLERLEKQMK 533 (561)
Q Consensus 524 ~l~~l~~~~~ 533 (561)
++..+.+.++
T Consensus 85 Nl~~~~~~l~ 94 (95)
T d1tjca_ 85 NLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.11 E-value=9e-11 Score=93.44 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=67.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGY------------LGAALALAELHVIEGRNGDAVSLLERYLKDWAD------- 484 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------- 484 (561)
|..+... |++++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++...|.
T Consensus 16 g~~~~~~-g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence 4455555 66666666666666655443 235667788888888888888888877765431
Q ss_pred h-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 485 D-----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 485 ~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
. .+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 1 3678889999999999999999999998876553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=6.7e-10 Score=79.34 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQS-------AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 459 (561)
+.+|.++...|++++|+.+|+++++..|.+ +.++..+|.++... |++++|+.+|+++++++|+++.++.+++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~-g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc-CChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344444455555555555555444443221 34455555555555 5555555555555555555555555544
Q ss_pred HH
Q 008550 460 EL 461 (561)
Q Consensus 460 ~~ 461 (561)
.+
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.04 E-value=2.6e-10 Score=98.45 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=109.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
.-.+..|++++|+..++++++.+|+++..+..++.++... |++++|+..|+++++++|++..++..++.++...+...+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~-G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 3456789999999999999999999999999999999998 999999999999999999999999999988877776666
Q ss_pred HHHHHHHHHhhC-CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 471 AVSLLERYLKDW-ADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 471 A~~~~~~~~~~~-~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
+........... |.. ..+...+.++...|++++|...+.++.+..|+.+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 554443332222 333 56777889999999999999999999999998776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.02 E-value=3.8e-10 Score=89.72 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-------
Q 008550 390 VHSYLQFSKVKEALYAAREAMKAMPQS------------AKALKLVGDVHASNASGREKAKKFYESALRLEPG------- 450 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------- 450 (561)
|..++..|+|++|+..|++++++.|+. ..++.++|.++... |++++|+..+++++.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l-g~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc-CccchhhHhhhhhhhccccccccccc
Confidence 444444455555555555555544432 23555666666665 6666666666666654321
Q ss_pred ----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 451 ----YLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 451 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
...+++++|.++..+|++++|+..|++++++.|
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 123566777777777777777777777777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.01 E-value=4.1e-10 Score=97.18 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=106.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
+.-.+..|++++|+..++++++.+|+++.++..++.++...|++++|+..|+++++++|++...+..++.++...+...+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999888877766666
Q ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHH
Q 008550 302 LSKLVHDLLS-IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY 353 (561)
Q Consensus 302 A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 353 (561)
+......... ..|.....+...+.++.. |++++|...+.++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 5444333222 234344556666777777 999999999999999888876544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.84 E-value=3.3e-08 Score=79.61 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=80.6
Q ss_pred CCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH
Q 008550 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (561)
Q Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (561)
..+...+......|......|++++|+..|.+++...+..+...... +.+ .......+.+....++..
T Consensus 5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~ 72 (179)
T d2ff4a2 5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTA 72 (179)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHHHHHHHH
Confidence 34455666677779999999999999999999999877653211100 000 011112223334456667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHH
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKS 342 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~ 342 (561)
++.++...|++++|+..+++++..+|.+..+|..++.++.. |++.+|+..|+++
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777 7777777777766
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=9.2e-08 Score=76.93 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
..++..++.++... |++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus 67 ~~a~~~la~~~~~~-g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 67 VLAHTAKAEAEIAC-GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455555555555 55555555555555555555555555555555555555555555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=2.3e-07 Score=67.14 Aligned_cols=82 Identities=10% Similarity=-0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 452 LGAALALAELHVIEGR---NGDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
+.+.+.+|+++.+..+ .++|+.+++.+++.+|.. +.++.+|..|.++|++++|..+++++++++|+|..+.....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 6788999999997754 568999999999988865 79999999999999999999999999999999999998888
Q ss_pred HHHHhcc
Q 008550 527 RLEKQMK 533 (561)
Q Consensus 527 ~l~~~~~ 533 (561)
.+...+.
T Consensus 115 ~Ie~~~~ 121 (124)
T d2pqrb1 115 MVEDKIQ 121 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=0.00038 Score=64.94 Aligned_cols=370 Identities=11% Similarity=-0.022 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHH---HHc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALA---ELG 185 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~---~~~ 185 (561)
..+|..+.-.+..|++.++......+..-|- ..|...-.+....++.. -..+...++.+|+.+....... ...
T Consensus 7 r~~y~~a~~a~~~~~~~~~~~~~~~L~dypL--~pYl~~~~l~~~~~~~~--~~~i~~Fl~~~p~~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKDYPL--YPYLEYRQITDDLMNQP--AVTVTNFVRANPTLPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTTSTT--HHHHHHHHHHHTGGGCC--HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhhcCCCC--HHHHHHHHHHhccccCC--HHHHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 4678899999999999999999999864442 22333333333333222 2345677888998876543221 111
Q ss_pred CCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 008550 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 265 (561)
...++....+..... . +.........+.+....|+..+|...+..+....+..+.....+-..+...|..
T Consensus 83 ~~~~~w~~~~~~~~~----~------p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~l 152 (450)
T d1qsaa1 83 ARREDWRGLLAFSPE----K------PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ 152 (450)
T ss_dssp HHTTCHHHHHHHCCS----C------CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS
T ss_pred HhccCHHHHHHhccC----C------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCC
Confidence 122233222221110 0 111112222344555556666666655555554444444433333333333332
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH------------------------HHHhcCCCCHHHH-
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH------------------------DLLSIDPSRPEVF- 320 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------------~~~~~~~~~~~~~- 320 (561)
.... +..........|++..|..... ......+.++...
T Consensus 153 t~~~----------------~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~ 216 (450)
T d1qsaa1 153 DPLA----------------YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQ 216 (450)
T ss_dssp CHHH----------------HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHH
T ss_pred CHHH----------------HHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhH
Confidence 2111 1111112222222222222111 1111122222211
Q ss_pred -HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHH----HHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHH
Q 008550 321 -VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM----KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL 394 (561)
Q Consensus 321 -~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (561)
...+..-.. .+.+.|...+.......+.....+.. ++..+...+..+.+...+........+......++....
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al 296 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL 296 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 122222222 66777777777766555444433322 222333445666676666666555544433222333345
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-----------------------
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----------------------- 451 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------- 451 (561)
..+++..+...+..+.......+...+.+|..+... |+.+.|...|..+... ++.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~-G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~ 374 (450)
T d1qsaa1 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER-GREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQN 374 (450)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHc-CChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCcc
Confidence 567777777776654333233466677788887777 8888888877776531 110
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 452 ------LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 452 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.......+..+...|+...|...+..++... ++.-...+|.+..+.|.+..|+....++
T Consensus 375 ~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0011233444555555555555555544332 2233444455555555555555444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=0.0013 Score=61.15 Aligned_cols=398 Identities=11% Similarity=-0.034 Sum_probs=194.6
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+..+...+.++++..+..+...|-. .... ...+.+.+. .........+ +...++.+|+.|..
T Consensus 9 ~y~~a~~a~~~~~~~~~~~~~~~L~d-----ypL~--pYl~~~~l~--~~~~~~~~~~----i~~Fl~~~p~~P~~---- 71 (450)
T d1qsaa1 9 RYAQIKQAWDNRQMDVVEQMMPGLKD-----YPLY--PYLEYRQIT--DDLMNQPAVT----VTNFVRANPTLPPA---- 71 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTT-----STTH--HHHHHHHHH--HTGGGCCHHH----HHHHHHHCTTCHHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHhhhcC-----CCCH--HHHHHHHHH--hccccCCHHH----HHHHHHHCCCChhH----
Confidence 46678888888998887776555421 1111 111111111 1222333333 44556667666522
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
..++......+.+.+++...+..+ +..|.+....+..+.+....|+..+|...
T Consensus 72 ------------------------~~lr~~~l~~L~~~~~w~~~~~~~---~~~p~~~~~~c~~~~A~~~~g~~~~a~~~ 124 (450)
T d1qsaa1 72 ------------------------RTLQSRFVNELARREDWRGLLAFS---PEKPGTTEAQCNYYYAKWNTGQSEEAWQG 124 (450)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHC---CSCCSSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHhccCHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 123333445556677777655544 34466777778888888888998888888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHH--
Q 008550 164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAEL-- 241 (561)
Q Consensus 164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-- 241 (561)
+..+-...+..+.....+.......+. ..+..+.. ........|++..|...+..+
T Consensus 125 ~~~lW~~~~~~p~~c~~l~~~~~~~~~-------------------lt~~~~~~---R~~~~l~~~~~~~a~~l~~~l~~ 182 (450)
T d1qsaa1 125 AKELWLTGKSQPNACDKLFSVWRASGK-------------------QDPLAYLE---RIRLAMKAGNTGLVTVLAGQMPA 182 (450)
T ss_dssp HHHHHSCSSCCCTHHHHHHHHHHHTTC-------------------SCHHHHHH---HHHHHHHTTCHHHHHHHHHTCCG
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCC-------------------CCHHHHHH---HHHHHHHcCChhhHHHHHhhCCh
Confidence 887776554444333322211110000 11111111 133344445544444433211
Q ss_pred ----------------------HHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH----HH
Q 008550 242 ----------------------LQRFPNNIHI--LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM----LL 293 (561)
Q Consensus 242 ----------------------~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~----~~ 293 (561)
....+.++.. ....+..-....+.+.|...+.......+.....+..... .+
T Consensus 183 ~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 262 (450)
T d1qsaa1 183 DYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRL 262 (450)
T ss_dssp GGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHH
Confidence 1112222211 1122222223345566666665555544444332222221 22
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
...+..+.+...+........+.......++..+..+++..+...+..+-......+...+-+|..+...|+.+.|...|
T Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 263 MGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 22344455555555544433333322223333222266666655555443222233445566666666666666666666
Q ss_pred HHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 374 RGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
..+.. .+++ |-.++... +|..-. +. .......+.. ...-...+..+... |....|...+..++.. .
T Consensus 343 ~~~a~-~~~f--YG~LAa~~--Lg~~~~-~~--~~~~~~~~~~~~~~~~~~~ra~~L~~~-g~~~~A~~e~~~l~~~--~ 411 (450)
T d1qsaa1 343 HQLMQ-QRGF--YPMVAAQR--IGEEYE-LK--IDKAPQNVDSALTQGPEMARVRELMYW-NLDNTARSEWANLVKS--K 411 (450)
T ss_dssp HHHHT-SCSH--HHHHHHHH--TTCCCC-CC--CCCCCSCCCCHHHHSHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--C
T ss_pred HHHhc-CCCh--HHHHHHHH--cCCCCC-CC--cCCCCccHHHhhhcChHHHHHHHHHHc-CCchHHHHHHHHHHhC--C
Confidence 66543 2221 11111111 111000 00 0000000000 11123456667777 9999999999887754 3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
++.-...++.+..+.|.++.|+....++
T Consensus 412 ~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 412 SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 5667778899999999999999887765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.22 E-value=1.3e-05 Score=60.56 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVS 473 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 473 (561)
++++|+.+|+++.+.. ++.+.+.++.. .. .+.++|+.+|+++.+. .++.+.+.+|.+|.. ..++.+|+.
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~-~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVSN--SQ-INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHTC--TT-SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhccc--cc-cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 3445555555554432 23333333321 12 4455555555555443 345555555555544 234555666
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 008550 474 LLERYLKDWADDSLHVKLAQVFAA----TNMLQEALSHYEAALRIN 515 (561)
Q Consensus 474 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 515 (561)
+|+++.+.. ++.+.+.+|.+|.. ..++++|..+|+++.+..
T Consensus 81 ~~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 666555432 23445555555554 345666666666665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=1.7e-05 Score=57.20 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHH
Q 008550 384 RSYQGLVHSYLQFS---KVKEALYAAREAMKAMPQSA-KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
.+.+..|+++.+.. +.++++.+++.++..+|.+. +.++.+|..+.+. |++++|..+++++++++|++..+..
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl-gdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHccCCCcHHHHH
Confidence 45555666665443 33456666666666666543 5666666666666 6666666666666666666655543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=4.1e-05 Score=57.77 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI----EGRNG 469 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~ 469 (561)
.+.++|+.+++++.+. .++.+.+.+|.+|..- ..++++|+.+|+++.+. .++.+.+.+|.+|.. ..+..
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence 4555666666665543 4566666666666531 13456666666666654 345666666666665 34666
Q ss_pred HHHHHHHHHHhhC
Q 008550 470 DAVSLLERYLKDW 482 (561)
Q Consensus 470 ~A~~~~~~~~~~~ 482 (561)
+|+.+|+++.+..
T Consensus 113 ~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 113 QAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 6666666666544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.014 Score=50.88 Aligned_cols=258 Identities=12% Similarity=0.076 Sum_probs=146.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+...|.|+.|..+|... + -+-.+..++...+++..|...+.+. +++..|..+...+.......-
T Consensus 21 ~~~c~~~~lye~A~~lY~~~----~----d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 21 GDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp --------CTTTHHHHHHHT----T----CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHhC----C----CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHH
Confidence 77788889999998888754 1 1334556777888889888887765 456788888888777766654
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH-h
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE-L 379 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~ 379 (561)
+..+ . .....+++-.......+.. |.+++.+.+++..+...+.+...+..++.+|.+.+ .++-.+.++..-. .
T Consensus 88 a~i~-~---~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y 162 (336)
T d1b89a_ 88 AQMC-G---LHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRV 162 (336)
T ss_dssp HHHT-T---TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTS
T ss_pred HHHH-H---HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccC
Confidence 4221 0 1112345555566667777 88889999999888877788888888888777654 3444444443211 1
Q ss_pred CCC--------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 380 RPD--------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 380 ~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
++. ...|..+..+|.+.|++++|+..+-. .|.++.-....-.++.+. .+.+..-+...-.+...|..
T Consensus 163 ~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k~-~N~e~~~~~i~~yL~~~p~~ 237 (336)
T d1b89a_ 163 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFKDIITKV-ANVELYYRAIQFYLEFKPLL 237 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHHHHHHHC-SSTHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHHHHHHcc-CChHHHHHHHHHHHHcCHHH
Confidence 111 11245677778888888887765432 111111111122222232 34333333333333333322
Q ss_pred HH----------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHH
Q 008550 452 LG----------AALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 452 ~~----------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 503 (561)
.. -...+.....+.++..-...+++.....+ ...++..++.+|...++++.
T Consensus 238 i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 238 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC-hHHHHHHHHHHHhCcchhHH
Confidence 11 01234445566677777777776654432 33688889999999998644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.55 E-value=0.021 Score=49.60 Aligned_cols=234 Identities=11% Similarity=0.034 Sum_probs=133.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
+.++...+++..|.+.+.+. +++.+|......+.......-|... .. ....+++-.......+...|.+++
T Consensus 47 ~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~ 117 (336)
T d1b89a_ 47 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEE 117 (336)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHH
Confidence 44556667777777766654 4567777777777766655443211 10 111234445556667777788888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHh-ccCC-------ChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIR-IDER-------HIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.+.+++.++...+.+...+..++.+|..-+.++-.+++...-. .++. ....|-.+..+|.+.|+++.|+..+
T Consensus 118 Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 118 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence 8888887777777777777777777766555555555544311 1111 1122455666777778877776654
Q ss_pred HHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH----------HHHHHHHhhhcCChHHHHHHHHH
Q 008550 374 RGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL----------KLVGDVHASNASGREKAKKFYES 443 (561)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----------~~l~~~~~~~~~~~~~A~~~~~~ 443 (561)
-.- .++.......-.++.+.++.+...+...-.++..|....-+ ..+.....+. ++..-...+++.
T Consensus 198 i~~---~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~-~~l~li~p~Le~ 273 (336)
T d1b89a_ 198 MNH---PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV-KQLPLVKPYLRS 273 (336)
T ss_dssp HHS---TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT-TCTTTTHHHHHH
T ss_pred HHc---chhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 331 12111122333445566666666555555565555432211 1122233333 555555666655
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 444 ALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 444 a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
... .++..+...++.+|...++++.
T Consensus 274 v~~--~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 274 VQN--HNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHT--TCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHH--cChHHHHHHHHHHHhCcchhHH
Confidence 433 3456788899999999999754
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.88 E-value=0.5 Score=29.82 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.3
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
+|-+.+..+-..|+.+.+.|.|++||++++++...
T Consensus 3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~y 37 (83)
T d2crba1 3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 37 (83)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566778888999999999999999999999775
|