Citrus Sinensis ID: 008557

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
Protein Sequence
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccHHHHcccccccHHHHHccccHHHHHHcccccHHHHHcccccHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHccccccccHcccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHccccccHcccccccHHHHHHHcccHHHHHHHHHcccccccccHEcccccccccHHHHHHHHccHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccEEEEEEcccccccHHHccccccEEHEEEEEcccccccccccccccccEEEcccHHHEEEEEHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccEEEEc
Coil and Loop (DISEMBL)
MIMEKQSSFRARTMEKQQSIrsvtfekqpsIRRVMEKQqsfngestdkppsalgpmekqqsfhgvtidkqpstrgvmeKQKSFRGFIEKQKSFRVVMERQLsfigggerkknkdspgkrgdLQLHLAARAGNLSRVMEILQSCDANEAKDLLSkknqegetplyvAAESGHALIVEEMLQHMnletasiparngydsfhVAAKQGHLVVKALVskdpstgfrtdkkgqTALHMAVKGQNEDIVLELirpdpsvlklednkgnTALHIAIKKGRTQIVRCLLSIEgidvnslnkagespldVAEKLGNTELFSLLKEAGaahskdhgkppsatkQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIftvpgqyveektegfslGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRkaesrsrsfsmsvASDQEILNSEYKRMYAL
Flexible Loop (DISEMBL)
mimekqssfrartmekqqsirsvtfekqpsirRVMEkqqsfngestdkppsalgpmekqqsfhgvtidkqpstrgvMEKQKSFRGfiekqksfrVVMERQlsfigggerkknkdspgkrgDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAhskdhgkppsATKQLKQTVSDIKHDVQSqlqqsrqtgfkVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNirkaesrsrsfsmsvasdqeilnseykrmyal
Low Complexity Region (SEG)
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFkvhkiakklkklhiSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAvvvvqtsvvvIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEsrsrsfsmsvasDQEILNSEYKRMYAL
Disordered region (IsUnstruct)
*************************************************************************************FI****SFRVVMERQLSF****************************NLSRVMEILQ*********************LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVS****************LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN*****************LF**********************************************FKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA*************************************
Disordered Region (DISOPRED)
MIMEKQSSFRAR*MEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQS*QT*FK************ISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKK************************LNSEYKRMYAL
Disordered Region (DISEMBL)
*********************SVTFEKQPSIRRVMEKQ*************ALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIG*************RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA***************************************GFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRN***************ASDQEILNSEYKRMYAL
Disordered Region (DISPRO)
MIM*KQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKL***********************LNSEYKRMYA*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	561	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.787	0.843	0.447	7e-99
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.755	0.718	0.408	8e-88
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.698	0.736	0.430	3e-84
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.344	0.049	0.318	3e-17
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.344	0.048	0.318	1e-16
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.338	0.161	0.348	7e-15
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.345	0.098	0.310	3e-14
Q14DN9	465	Ankyrin repeat and death	no	no	0.422	0.509	0.300	4e-14
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.345	0.044	0.310	4e-14
Q810B6	1169	Ankyrin repeat and FYVE d	no	no	0.409	0.196	0.295	3e-13

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  361 bits (927), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 214/478 (44%), Positives = 313/478 (65%), Gaps = 36/478 (7%)

Query: 94  RVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153
           +++M+   S + G + K   D+         H+AA+ GNL +V+++L   +   +    S
Sbjct: 73  KILMKHSDSVLAGTKAKNGFDA--------FHIAAKNGNL-QVLDVLIEANPELSFTFDS 123

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH-LVVKAL 212
            K     T L+ AA  GH  IV  +L    ++ A+I   NG  + H AA+ GH ++VK L
Sbjct: 124 SKT----TALHTAASQGHGEIVCFLLDK-GVDLAAIARSNGKTALHSAARNGHTVIVKKL 178

Query: 213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272
           + K      R DKKGQTALHMAVKGQN +IV  L+  D S++   DNKGNT LHIA++K 
Sbjct: 179 IEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKN 238

Query: 273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK-----DHGK 327
           R +IV+ +L    +   ++NK+GE+ LD+AEK G  E+  LL++ G  +++     +  +
Sbjct: 239 RAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVE 298

Query: 328 PPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAV 387
           P  ++++LK+TVS+I H+V +QL+Q+ +T  ++  IAK++ K+H  GLNNAINS+T+VA+
Sbjct: 299 PSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAI 358

Query: 388 LIATVAFAAIFTVPGQYVEEKTE---GFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVV 444
           LIATVAFAAIF VPGQY ++  +   G+SLG+A  A    F+IF VFDS ALFISLAVVV
Sbjct: 359 LIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVV 418

Query: 445 VQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGT 504
           VQTSVVVIE +AK+Q++ +INKLMW+AC+ IS+AF+SL++VVVGE  + LAV  T IG  
Sbjct: 419 VQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGAL 478

Query: 505 IMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKR-MYAL 561
           IM++T+G+MCY VI +R+E             S+S   S+ SD E+ +S++ R +YA+
Sbjct: 479 IMVSTLGTMCYWVIANRIEG------------SKSSPASMMSDPELADSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  325 bits (832), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 287/480 (59%), Gaps = 56/480 (11%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           G+  L  AA  G+L  V E+L+      +++ ++KKN+ G  PL++AA  GH  IVE +L
Sbjct: 129 GETALFTAADKGHLDVVKELLKYS----SRESIAKKNRSGYDPLHIAAIQGHHAIVEVLL 184

Query: 180 QH-------------MNLETAS--------------------IPARNGYDSFHVAAKQGH 206
            H               L +A+                    I   N  ++ H+AA+QGH
Sbjct: 185 DHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGH 244

Query: 207 L-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 265
           + V+KAL+SKDP    R DKKGQTALHMAVKGQ+ ++V  L+  DP+++   D   NTAL
Sbjct: 245 VEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTAL 304

Query: 266 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE----AGAAH 321
           H+A +K R +IV  LLS+   + N+L +  ++ LD+AE L  +E  S +KE    +GA  
Sbjct: 305 HVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALR 364

Query: 322 SKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINS 381
           + +  +P     +L+ TV+ IK+DV  QL+Q+++T   VH I+K+L+KLH  G+NNA NS
Sbjct: 365 ANELNQP---RDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNS 421

Query: 382 STVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLA 441
            TVVAVL ATVAFAAIFTVPG    +       G A +   A+F IFF+F++LALF SLA
Sbjct: 422 VTVVAVLFATVAFAAIFTVPGGDNND-------GSAVVVGRASFKIFFIFNALALFTSLA 474

Query: 442 VVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVI 501
           VVVVQ ++V  E KA++++V VINKLMWLA +  S+AF++ +Y+VVG  + W A   TV+
Sbjct: 475 VVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVV 534

Query: 502 GGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 561
           GG IM   +G+M Y V+    ++K+ R++RK    +R    +     +  NSE   ++A+
Sbjct: 535 GGVIMAGVLGTMTYYVV----KSKRTRSMRKKVKSARRSGSNSWHHSDFSNSEVDPIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  312 bits (800), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 182/423 (43%), Positives = 262/423 (61%), Gaps = 31/423 (7%)

Query: 124 LHLAARAGNLSRVMEILQ-------SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
            H+AA+ G+L  V E+L+        CDA+              +PLY AA   H  IV 
Sbjct: 98  FHVAAKRGHLGIVKELLRLWPELCRICDASNT------------SPLYAAAVQDHLEIVN 145

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAV 235
            ML  ++   A I  +NG  S H A + G L +VKAL+ KD +     DKKGQTALHMAV
Sbjct: 146 AMLD-VDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAV 204

Query: 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 295
           KG++ ++V E+++ D ++L   D KGNTALHIA +K R QI   LL+   I+VN++N   
Sbjct: 205 KGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQK 264

Query: 296 ESPLDVAEKLGNTE----LFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQ 351
           E+ +D+A+KL  +E    +   L EAGA H +  G+   A + LK+ VSDIKH+VQSQL 
Sbjct: 265 ETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEA-RALKRAVSDIKHEVQSQLL 323

Query: 352 QSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEG 411
           Q+ +T  +V  IAK+L+KLH   + N  NS TVVAVL A++AF AIF +PGQY    TEG
Sbjct: 324 QNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYF---TEG 380

Query: 412 FSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLA 471
             +GQA+IA    F +F + ++ +LFISLAVVVVQ ++V  + +A++++V V+NKLMW A
Sbjct: 381 SHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAA 440

Query: 472 CLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA--KKLRN 529
           C     AF+++ + VVG+ + W+A++ T++G  I++ T+ SMCY V   R  +     R 
Sbjct: 441 CACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRR 500

Query: 530 IRK 532
           IR+
Sbjct: 501 IRR 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 39/232 (16%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           RG+  LH+AARAG +  V  +L+    N A  L+  + +E +TPL++A+  G   IV+ +
Sbjct: 463 RGETALHMAARAGQVEVVRCLLR----NGA--LVDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 179 LQHMNLETA-------------------------------SIPARNGYDSFHVAAKQGHL 207
           LQHM    A                               S+  + G+   HVAAK G L
Sbjct: 517 LQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSL 576

Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
            V  L+ +  +      K G T LH+A    N+ + L L+    S      N G T LHI
Sbjct: 577 DVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKN-GYTPLHI 635

Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           A KK + QI   LL+  G + N++ K G +PL +A + G+T++ +LL + GA
Sbjct: 636 AAKKNQMQIASTLLNY-GAETNTVTKQGVTPLHLASQEGHTDMVTLLLDKGA 686

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 39/232 (16%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           RG+  LH+AARAG +  V  +L+    N A  L+  + +E +TPL++A+  G   IV+ +
Sbjct: 463 RGETALHMAARAGQVEVVRCLLR----NGA--LVDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 179 LQHMNLETA-------------------------------SIPARNGYDSFHVAAKQGHL 207
           LQHM    A                               S+  + G+   HVAAK G L
Sbjct: 517 LQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSL 576

Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
            V  L+ +  +      K G T LH+A    N+ + L L+    S      N G T LHI
Sbjct: 577 DVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKN-GYTPLHI 635

Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           A KK + QI   LL+  G + N + K G +PL +A + G+T++ +LL + GA
Sbjct: 636 AAKKNQMQIASTLLNY-GAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGA 686

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 14/204 (6%)

Query: 118  KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
              G+  LH AA++GNL+ V  +++    N+A D+ +K N  GET L+ AAESG+  +V  
Sbjct: 929  NSGETILHFAAKSGNLNLVNWLIK----NKA-DIHAKTNS-GETILHFAAESGNLNLVSL 982

Query: 178  MLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVK 236
            ++   N    +    +G  + H A + G+L +V  L+ K      +T+  G+T LH AV 
Sbjct: 983  LIH--NGTDINTKTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNS-GETILHFAVD 1039

Query: 237  GQNEDIV-LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 295
              + D+V L ++R      K +D  G TALH A++     +V  LL + G DVN+ N +G
Sbjct: 1040 LGSLDLVSLLMVRGADVNAKTDD--GLTALHYAVESDNLALVS-LLMVYGADVNAKNNSG 1096

Query: 296  ESPLDVAEKLGNTELFSLLKEAGA 319
            E+PL  A    + +L SLL   GA
Sbjct: 1097 ETPLHYAVIFNSLDLVSLLIHNGA 1120

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 22/216 (10%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           +R+ N D+  K+G+  LH+A+ AG  + V+++L +  AN     ++ ++Q G TPLY+AA
Sbjct: 78  QREANVDAATKKGNTALHIASLAGQ-AEVVKVLVTNGAN-----VNAQSQNGFTPLYMAA 131

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG 227
           +  H  +V  +L   N  + S+   +G+    VA +QGH  V +L+          D KG
Sbjct: 132 QENHLEVVRFLLD--NGASQSLATEDGFTPLAVALQQGHDQVVSLL-------LENDTKG 182

Query: 228 QT---ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS-I 283
           +    ALH+A +  +      L++ D +   +E   G T LHIA   G   +   LL+  
Sbjct: 183 KVRLPALHIAARKDDTKAAALLLQNDTNA-DVESKSGFTPLHIAAHYGNINVATLLLNRA 241

Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             +D  + N    +PL VA K GN  +  LL + GA
Sbjct: 242 AAVDFTARNDI--TPLHVASKRGNANMVKLLLDRGA 275

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q14DN9|AKD1B_MOUSE Ankyrin repeat and death domain-containing protein 1B OS=Mus musculus GN=Ankdd1b PE=2 SV=2

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 19/256 (7%)

Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
           D   K G   +HLAA +G+   +M +L    A++       KNQEG   L++AA++ +  
Sbjct: 32  DVADKHGLTVIHLAAWSGSFE-IMLMLVKAGADQ-----RAKNQEGMNALHLAAQNNNLH 85

Query: 174 IVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALH 232
           IV+ ++  ++L   + P   G   FH+AA++GH+ +++ L+  +  T  + DK G TALH
Sbjct: 86  IVDYLIHDLHLHDLNQPNERGRKPFHLAAERGHVEMIEKLIFLNLHTSEK-DKDGNTALH 144

Query: 233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 292
           +A    +   V  L+     V +  +N G T   +A+  G  +  R LL+  G DVN  N
Sbjct: 145 LAAMHGHSPAVQVLLTQWSEVNESNEN-GETPFLLAVVGGHEECSRVLLA-GGSDVNIPN 202

Query: 293 KAGESPLDVAEKLGNTELFSLL--KEAGAAHSKDHGKPP------SATKQLKQTVSDIKH 344
           K   S L  A + G+T L + L  + A     K+  +PP      +    +  ++   +H
Sbjct: 203 KLNVSALQTATRNGHTALVNFLLGENADLQQQKESKEPPLHLAVINNRPAVVNSLLSARH 262

Query: 345 DVQSQLQQSRQTGFKV 360
           DV   L Q RQT   V
Sbjct: 263 DVDV-LDQRRQTPLHV 277

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 22/216 (10%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           +R+ N D+  K+G+  LH+A+ AG  + V+++L +  AN     ++ ++Q G TPLY+AA
Sbjct: 95  QREANVDAATKKGNTALHIASLAGQ-AEVVKVLVTNGAN-----VNAQSQNGFTPLYMAA 148

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG 227
           +  H  +V+ +L   N  + S+   +G+    VA +QGH  V +L+          D KG
Sbjct: 149 QENHLEVVKFLLD--NGASQSLATEDGFTPLAVALQQGHDQVVSLL-------LENDTKG 199

Query: 228 Q---TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS-I 283
           +    ALH+A +  +      L++ D +   +E   G T LHIA   G   +   LL+  
Sbjct: 200 KVRLPALHIAARKDDTKAAALLLQNDNNA-DVESKSGFTPLHIAAHYGNINVATLLLNRA 258

Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             +D  + N    +PL VA K GN  +  LL + GA
Sbjct: 259 AAVDFTARNDI--TPLHVASKRGNANMVKLLLDRGA 292

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q810B6|ANFY1_MOUSE Ankyrin repeat and FYVE domain-containing protein 1 OS=Mus musculus GN=Ankfy1 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 17/247 (6%)

Query: 74  RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNL 133
           R V E  +S   F+ +     V   RQ    G GE +       + G   LHLAA  G L
Sbjct: 731 RAVDENNESTACFLIR-SGCDVNSPRQPGTNGEGEEE------ARDGQTPLHLAASWG-L 782

Query: 134 SRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
              ++ L    AN     ++ ++ EG TP++VA  + H++I++ ++ H N+E  S+  R 
Sbjct: 783 EETVQCLLEFGAN-----VNAQDAEGRTPVHVAISNQHSVIIQLLISHPNIEL-SVRDRQ 836

Query: 194 GYDSFHVA-AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
           G   F  A   + +   +A++ ++     + D KG+  LH+AV+  + + VL LI    +
Sbjct: 837 GLTPFACAMTYKNNKAAEAILKRESGAAEQVDNKGRNFLHVAVQNSDIESVLFLISVQAN 896

Query: 253 V-LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
           V  +++D    T LH+A++ G   IVR LL + G  VN L K  ++ L +A +     + 
Sbjct: 897 VNSRVQDASKLTPLHLAVQAGSEIIVRNLL-LAGAKVNELTKHRQTALHLAAQQDLPTIC 955

Query: 312 SLLKEAG 318
           S+L E G
Sbjct: 956 SVLLENG 962

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	561
359478231	595	PREDICTED: ankyrin repeat-containing pro	0.937	0.884	0.648	0.0
147783618	598	hypothetical protein VITISV_035656 [Viti	0.885	0.831	0.648	0.0
255576418	606	ankyrin repeat-containing protein, putat	0.955	0.884	0.648	0.0
356506136	566	PREDICTED: ankyrin repeat-containing pro	0.873	0.865	0.679	0.0
356573310	558	PREDICTED: ankyrin repeat-containing pro	0.871	0.876	0.666	0.0
449444933	574	PREDICTED: ankyrin repeat-containing pro	0.894	0.874	0.646	0.0
15225141	662	ankyrin repeats-containing protein [Arab	0.987	0.836	0.595	0.0
296084361	534	unnamed protein product [Vitis vinifera]	0.828	0.870	0.661	0.0
224141131	522	predicted protein [Populus trichocarpa]	0.807	0.867	0.655	0.0
356506142	522	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.791	0.850	0.645	1e-175

>gi|359478231|ref|XP_002279889.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/617 (64%), Positives = 459/617 (74%), Gaps = 91/617 (14%)

Query: 14  MEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPST 73
           MEK  S R VT EKQ S R VMEKQQSF G            MEKQQSF           
Sbjct: 1   MEKPTSSRGVTMEKQQSFRGVMEKQQSFRG-----------VMEKQQSF----------- 38

Query: 74  RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNL 133
           RG+MEKQKSFRGF+EKQKSFR+ MERQLSF G  ERKK K+SPGKRGD  LHLAARAGNL
Sbjct: 39  RGLMEKQKSFRGFMEKQKSFRIAMERQLSFGGSSERKKVKESPGKRGDSHLHLAARAGNL 98

Query: 134 SRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES------------------------ 169
           +RV EI++ C+++E + LLSK+NQEGETPLYVA+E+                        
Sbjct: 99  TRVKEIIEKCESSELQALLSKQNQEGETPLYVASENGHALVVSELLEHVDLQTASIKANN 158

Query: 170 -----------GHALIVEEMLQ-----------------------------HMNLET--- 186
                      GH  +++E+L+                             H+ LET   
Sbjct: 159 GYDPFHVATKQGHLEVLKELLRFFPNLVMTTDSSNSTALHTAAAQGHIDVVHLLLETDPN 218

Query: 187 -ASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
            A I   NG    H AA+ GHL V+KALVSKDPS  FRTDKKGQTALHMAVKGQN +IV 
Sbjct: 219 LAKIARNNGKTVLHSAARMGHLEVLKALVSKDPSIVFRTDKKGQTALHMAVKGQNVEIVH 278

Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304
            L++PDPSV+ LEDNKGNTALHIA +KGR+Q V+CLLS+EGI +N+ NKAGE+PLD+AEK
Sbjct: 279 ALLKPDPSVMSLEDNKGNTALHIATRKGRSQFVQCLLSVEGIKMNATNKAGETPLDIAEK 338

Query: 305 LGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIA 364
            G  E+ S+L+EAGA +S DHGKPP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IA
Sbjct: 339 FGTQEIASILREAGATNSADHGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIA 398

Query: 365 KKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAA 424
           K+LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AA
Sbjct: 399 KRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAA 458

Query: 425 FIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTY 484
           F+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTY
Sbjct: 459 FLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTY 518

Query: 485 VVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSV 544
           VVVG H+RWLAV ATVIG  IMLTTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S+
Sbjct: 519 VVVGSHARWLAVCATVIGSVIMLTTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVSM 578

Query: 545 ASDQEILNSEYKRMYAL 561
           AS+ E+LNSEY+RMYAL
Sbjct: 579 ASESELLNSEYRRMYAL 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783618|emb|CAN68139.1| hypothetical protein VITISV_035656 [Vitis vinifera]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/598 (64%), Positives = 445/598 (74%), Gaps = 101/598 (16%)

Query: 35  MEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFR 94
           MEKQQSF G            MEKQQSF GV ++KQ S RG+MEKQKSFRGF+EKQKSFR
Sbjct: 1   MEKQQSFRG-----------VMEKQQSFRGV-MEKQQSFRGLMEKQKSFRGFMEKQKSFR 48

Query: 95  VVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK 154
           + MERQLSF G  ERKK K+SPGKRGD  LHLAARAGNL+RV EI++ C+++E + LLSK
Sbjct: 49  IAMERQLSFGGSSERKKVKESPGKRGDSHLHLAARAGNLTRVKEIIEKCESSELQALLSK 108

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL------- 207
           +NQEGETPLYVA+E+GHAL+V E+L+H++L+TASI A NGYD FHVA KQGHL       
Sbjct: 109 QNQEGETPLYVASENGHALVVSELLEHVDLQTASIKANNGYDPFHVATKQGHLGHVAIWC 168

Query: 208 --------------------------------VVKALVSKDPSTGFRTDKKGQTALHMAV 235
                                           V+KALVSKDPS  FRTDKKGQTALHMAV
Sbjct: 169 TSFLKTDPNLAKIARNNGKTVLHSAARMGHLEVLKALVSKDPSIVFRTDKKGQTALHMAV 228

Query: 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI------------------- 276
           KGQN +IV  L++PDPSV+ LEDNKGNTALHIA +KGR+Q+                   
Sbjct: 229 KGQNVEIVHALLKPDPSVMSLEDNKGNTALHIATRKGRSQVFTSAIDYLHSDGQRDMFCF 288

Query: 277 -------------------------------VRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
                                          V+CLLS+EGI +N+ NKAGE+PLD+AEK 
Sbjct: 289 LYPAEYFVILHIEASVGHNRIYVLCNIYTYFVQCLLSVEGIKMNATNKAGETPLDIAEKF 348

Query: 306 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 365
           G  E+ S+L+EAGA +S DHGKPP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IAK
Sbjct: 349 GTQEIASILREAGATNSADHGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIAK 408

Query: 366 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 425
           +LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AAF
Sbjct: 409 RLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAAF 468

Query: 426 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 485
           +IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYV
Sbjct: 469 LIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYV 528

Query: 486 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMS 543
           VVG H+RWLAV ATVIG  IMLTTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S
Sbjct: 529 VVGSHARWLAVCATVIGSVIMLTTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVS 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576418|ref|XP_002529101.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223531452|gb|EEF33285.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/629 (64%), Positives = 470/629 (74%), Gaps = 93/629 (14%)

Query: 3   MEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSF 62
           MEKQ SF+ R MEKQ S +          ++VMEK  SF+G  T+ PP++ G MEK    
Sbjct: 1   MEKQVSFKGRAMEKQVSFK----------QKVMEKLPSFHG-ITENPPTSHGLMEKH--- 46

Query: 63  HGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDL 122
                   PS RG +EKQKSFRGF+EKQKSFRV+MERQLSFIGGGERKKNK+SPGKRGD 
Sbjct: 47  --------PSFRGALEKQKSFRGFVEKQKSFRVIMERQLSFIGGGERKKNKESPGKRGDS 98

Query: 123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET--------------------- 161
           Q+HLAARAGNLSRV EILQ+CD NEAKDLL+ KNQEGET                     
Sbjct: 99  QIHLAARAGNLSRVREILQNCDGNEAKDLLAIKNQEGETPLYAAAENGHVGIVAEMLEYM 158

Query: 162 --------------PLYVAAESGHALIVEEMLQ------------------------HMN 183
                         P ++AA+ GH  ++  +L                         H++
Sbjct: 159 NLETASIPARNGYDPFHIAAKQGHLEVLNALLHVFPNLAMTTDLSCTTALHTAATQGHID 218

Query: 184 -----LET----ASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHM 233
                LET    A I   NG  + H AA+ GH+ VV++L+SKDPSTG RTDKKGQTALHM
Sbjct: 219 VVNLLLETDSNLAKIARNNGKTALHSAARMGHVEVVRSLLSKDPSTGLRTDKKGQTALHM 278

Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
           AVKGQNE+IVLEL++PDP+ + LEDNKGNTALHIA KKGRTQ VRCLLS+EGI+VN++NK
Sbjct: 279 AVKGQNEEIVLELLKPDPAFMSLEDNKGNTALHIATKKGRTQNVRCLLSVEGINVNAINK 338

Query: 294 AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQS 353
           AGE+ LD+AEKLG+ EL S+LKEA A +SKD GKP +  KQLKQTVSDIKHDVQSQLQQ+
Sbjct: 339 AGETSLDIAEKLGSPELVSILKEARALNSKDLGKPQNPAKQLKQTVSDIKHDVQSQLQQT 398

Query: 354 RQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFS 413
           RQTGFKV KIAK+L+KLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQY+E+K +G S
Sbjct: 399 RQTGFKVQKIAKRLQKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYIEDKEKGTS 458

Query: 414 LGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACL 473
           LGQAHIA N AF+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVF INKLMWLACL
Sbjct: 459 LGQAHIADNPAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFFINKLMWLACL 518

Query: 474 FISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKA 533
           FISIAFISLTYVVVGE  RWLA+ ATVIGG+IMLTTIGSMCYCVILHRME +      + 
Sbjct: 519 FISIAFISLTYVVVGEKYRWLAIYATVIGGSIMLTTIGSMCYCVILHRME-ESRLRSIRR 577

Query: 534 ESRSRSFSMSVASDQEILNSEY-KRMYAL 561
           ESRSRS+SMS+ S+QEI +SEY KRMYAL
Sbjct: 578 ESRSRSYSMSMVSEQEIFDSEYNKRMYAL 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506136|ref|XP_003521843.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/567 (67%), Positives = 438/567 (77%), Gaps = 77/567 (13%)

Query: 65  VTIDKQPSTRG-VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQ 123
           VT++KQ S R   MEKQKSFRGF+EKQKSFR+VME+QLSF+G  ERKKNK+SPGKRGDL 
Sbjct: 7   VTMEKQSSFRASTMEKQKSFRGFMEKQKSFRIVMEKQLSFMGS-ERKKNKESPGKRGDLP 65

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET---------------------- 161
           +HLAARAGNLSRV EI+Q+   NE KDLL+K+N EGET                      
Sbjct: 66  IHLAARAGNLSRVKEIIQNYSNNETKDLLAKQNLEGETPLYVASENGHALVVSEILNYLD 125

Query: 162 -------------PLYVAAESGHALIVEEMLQ------------------------HMN- 183
                        P ++AA+ GH  ++ E+L                         H++ 
Sbjct: 126 LQTASIAARNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDV 185

Query: 184 ----LET----ASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMA 234
               LE+    A I   NG    H AA+ GHL VVKAL++KDPSTGFRTDKKGQTALHMA
Sbjct: 186 VKLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDPSTGFRTDKKGQTALHMA 245

Query: 235 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA 294
           VKGQNE+I+LEL++PDP+VL LEDNKGNTALHIA KKGRTQ VRCLLS+E I++N+ NKA
Sbjct: 246 VKGQNEEILLELVKPDPAVLSLEDNKGNTALHIATKKGRTQNVRCLLSMECININATNKA 305

Query: 295 GESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSR 354
           GE+PLDVAEK G+ EL S+L++AGAA+S D  KPP+ +KQLKQTVSDIKHDVQSQLQQ+R
Sbjct: 306 GETPLDVAEKFGSPELVSILRDAGAANSTDQRKPPNPSKQLKQTVSDIKHDVQSQLQQTR 365

Query: 355 QTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSL 414
           QTG +V KIAKKLKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE+KT GFSL
Sbjct: 366 QTGMRVQKIAKKLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEDKTHGFSL 425

Query: 415 GQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLF 474
           GQA+IA NAAF+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLF
Sbjct: 426 GQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLF 485

Query: 475 ISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAE 534
           ISIAFISLTYVVVG HSRWLA+ ATVIG  IML+TIGSMCYCVILHRME  KLR      
Sbjct: 486 ISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETKLR------ 539

Query: 535 SRSRSFSMSVASDQEILNSEYKRMYAL 561
           + SRSFSMS ASDQEILNSEYKRMYAL
Sbjct: 540 AESRSFSMSHASDQEILNSEYKRMYAL 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573310|ref|XP_003554805.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/575 (66%), Positives = 433/575 (75%), Gaps = 86/575 (14%)

Query: 56  MEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDS 115
           MEKQ SF   T          MEKQKSFRGF+EKQKSFR+VME+QLSFIG  ERKKNK+S
Sbjct: 1   MEKQSSFRAST----------MEKQKSFRGFMEKQKSFRIVMEKQLSFIGS-ERKKNKES 49

Query: 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET-------------- 161
           PGKRGDL +HLAARAGNLSRV EI+Q+    E KDLL+K+N EGET              
Sbjct: 50  PGKRGDLPIHLAARAGNLSRVKEIIQNYSNYETKDLLAKQNLEGETPLYVASENGHALVV 109

Query: 162 ---------------------PLYVAAESGHALIVEEMLQ-------------------- 180
                                P ++AA+ GH  ++ E+L                     
Sbjct: 110 SEILKYLDLQTASIAAKNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTA 169

Query: 181 ----HMN-----LET----ASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKK 226
               H++     LE+    A I   NG    H AA+ GHL VVKAL++KD STGFRTDKK
Sbjct: 170 ATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDRSTGFRTDKK 229

Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           GQTALHMAVKGQNE+I+LEL++PDP+VL LEDNKGNTALHIA KKGRTQ V CLLS+EGI
Sbjct: 230 GQTALHMAVKGQNEEILLELVKPDPAVLSLEDNKGNTALHIATKKGRTQNVHCLLSMEGI 289

Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDV 346
           ++N+ NKAGE+PLDVAEK G+ EL S+L++AGAA+S D  KPP+A+KQLKQTVSDIKHDV
Sbjct: 290 NINATNKAGETPLDVAEKFGSPELVSILRDAGAANSTDQRKPPNASKQLKQTVSDIKHDV 349

Query: 347 QSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVE 406
           QSQLQQ+RQTG +V KIAKKLKKLHISGLNNAI S+TVVAVLIATVAFAAIFTVPGQYVE
Sbjct: 350 QSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAITSATVVAVLIATVAFAAIFTVPGQYVE 409

Query: 407 EKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINK 466
            KT GF+LGQA+IA NAAF+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINK
Sbjct: 410 GKTHGFTLGQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINK 469

Query: 467 LMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKK 526
           LMW+ACLFISIAFISLTYVVVG  SRWLA+ ATVIG  IML+TIGSMCYCVILHRME  K
Sbjct: 470 LMWMACLFISIAFISLTYVVVGSQSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETK 529

Query: 527 LRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 561
           LR      + SRSFSMS ASDQEILNSEYKRMYAL
Sbjct: 530 LR------AESRSFSMSHASDQEILNSEYKRMYAL 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444933|ref|XP_004140228.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449490552|ref|XP_004158638.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/574 (64%), Positives = 436/574 (75%), Gaps = 72/574 (12%)

Query: 59  QQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGK 118
           + S   ++++KQPS+R VME+QKS RGF+EKQKSFR+VMERQLSF+GG ERKK K+SPGK
Sbjct: 2   ENSLKEISLEKQPSSRVVMERQKSIRGFMEKQKSFRMVMERQLSFMGG-ERKKTKESPGK 60

Query: 119 RGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAES-------- 169
           RGD  LHLAARAGN+ RV EILQ S D NE+  LLSK+N EGETPLY AAE+        
Sbjct: 61  RGDSPLHLAARAGNVVRVKEILQNSNDKNESNSLLSKQNLEGETPLYAAAENGHDFVVAE 120

Query: 170 ---------------------------GHALIVEEMLQ-HMNL----------------- 184
                                      GH  +++E+L  H NL                 
Sbjct: 121 MLKYLDLETSFMAARNGYDAFHVAAKHGHLKVLQELLDVHPNLAMTTDSVNSTALHTAAM 180

Query: 185 ---------------ETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQ 228
                          E + I   NG    H AA+ GH+ VVK LVSKDP+ GFRTDKKGQ
Sbjct: 181 QGHIDVVNLLLETDSELSKIARNNGKTVLHSAARMGHVEVVKLLVSKDPTLGFRTDKKGQ 240

Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 288
           T LHMAVKGQN+ IV+EL+ PDPSVL LEDNKGNTALHIA+ K RT+ VR LLS+ GI++
Sbjct: 241 TPLHMAVKGQNDSIVMELLSPDPSVLTLEDNKGNTALHIAVLKRRTENVRRLLSVNGINI 300

Query: 289 NSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQS 348
           N++NK GE+PLD+AEK G++EL ++LKEAGA  SKD GKPPSA KQLKQTVSDIKHDV+S
Sbjct: 301 NAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQLKQTVSDIKHDVES 360

Query: 349 QLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEK 408
           QLQQ+RQTGF+V +IAK+LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQ+VE+K
Sbjct: 361 QLQQTRQTGFRVQRIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQFVEQK 420

Query: 409 TEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLM 468
           +   +LGQAHIA NAAFIIF V DS+ALFISLAVVVVQTSVVVIE+KAKRQLVFVINKLM
Sbjct: 421 SNDETLGQAHIATNAAFIIFMVSDSMALFISLAVVVVQTSVVVIEQKAKRQLVFVINKLM 480

Query: 469 WLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLR 528
           WLACLFIS+AFIS+TYVVVG + +WLA+ ATVIG TIMLTTIGSMCYCV+ HRME  K+R
Sbjct: 481 WLACLFISVAFISITYVVVGSNHKWLAICATVIGSTIMLTTIGSMCYCVVQHRMEESKMR 540

Query: 529 NIRKAESRSRSFSMS-VASDQEILNSEYKRMYAL 561
           +I++ ESRSRS+SMS VAS+ E+LN+EYKRMYAL
Sbjct: 541 SIKRGESRSRSYSMSVVASESELLNNEYKRMYAL 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225141|ref|NP_180741.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|4887754|gb|AAD32290.1| ankyrin-like protein [Arabidopsis thaliana] gi|330253495|gb|AEC08589.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/652 (59%), Positives = 467/652 (71%), Gaps = 98/652 (15%)

Query: 4   EKQSSF-----------RARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDK-PPS 51
           EKQ SF           + ++MEKQQS R V  E QP   R +EKQ SF G + +    S
Sbjct: 15  EKQQSFNGIIINQTQENQTKSMEKQQSFRCVV-ENQPRKARALEKQVSFQGVNVENYQQS 73

Query: 52  ALG-PMEKQQSFHGVTID--------KQPS-TRGVMEKQKSFRG-FIEKQKSFRVVMERQ 100
            LG  MEKQQSF GV ++        K PS  R  ME+QKSFRG F+EKQKSFRVVMERQ
Sbjct: 74  RLGRSMEKQQSFRGVNVENHKRGVMEKLPSFGRATMERQKSFRGGFLEKQKSFRVVMERQ 133

Query: 101 LSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGE 160
           LSFIG  ER+K  +SPGKRGD  LH+AAR GNLS+V E+++ C  +E K+LLSK+N EGE
Sbjct: 134 LSFIG--ERRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGC-GDELKELLSKQNLEGE 190

Query: 161 T-----------------------------------PLYVAAESGHALIVEEMLQ----- 180
           T                                   P +VAA+ GH  +++ +L+     
Sbjct: 191 TPLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNL 250

Query: 181 -------------------HMN-----LET----ASIPARNGYDSFHVAAKQGHL-VVKA 211
                              H++     LET    A I   NG  + H AA+ GH+ VVK+
Sbjct: 251 AMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKS 310

Query: 212 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271
           L+ KDPS GFRTDKKGQTALHMAVKGQN+ IV+EL++PD +VL +EDNKGNT LHIA  K
Sbjct: 311 LIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNK 370

Query: 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA 331
           GR +IVRCL+S EGI++N +NKAG++PLDV+EK+GN EL S+LKEAGAA +KD GKP + 
Sbjct: 371 GRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNP 430

Query: 332 TKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIAT 391
            KQLKQTVSDIKH+VQSQLQQSRQTG +V KIAK+LKKLHISGLNNAINS+TVVAVLIAT
Sbjct: 431 AKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIAT 490

Query: 392 VAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVV 451
           VAFAAIFT+PGQY E++++G  LGQAHIA  A F++FF+FDSLALFISLAVVVVQTSVVV
Sbjct: 491 VAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVV 550

Query: 452 IEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIG 511
           IE+KAK++LVFVINKLMW ACLFISIAF+SL+Y+VVG+   WLAV ATVIGGTIMLTTIG
Sbjct: 551 IEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIG 610

Query: 512 SMCYCVILHRMEAKKLRNIRKAESRSRSFSMS-VASDQEILNSEY-KRMYAL 561
           +MCYCV++HRME  KLR+IRK  S+S+SFSMS + SD +ILN EY KRMYAL
Sbjct: 611 AMCYCVVMHRMEESKLRSIRKERSKSQSFSMSRMPSDSDILNGEYNKRMYAL 662

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084361|emb|CBI24749.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/534 (66%), Positives = 409/534 (76%), Gaps = 69/534 (12%)

Query: 97  MERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN 156
           MERQLSF G  ERKK K+SPGKRGD  LHLAARAGNL+RV EI++ C+++E + LLSK+N
Sbjct: 1   MERQLSFGGSSERKKVKESPGKRGDSHLHLAARAGNLTRVKEIIEKCESSELQALLSKQN 60

Query: 157 QEGETPLYVAAES-----------------------------------GHALIVEEMLQ- 180
           QEGETPLYVA+E+                                   GH  +++E+L+ 
Sbjct: 61  QEGETPLYVASENGHALVVSELLEHVDLQTASIKANNGYDPFHVATKQGHLEVLKELLRF 120

Query: 181 ----------------------------HMNLET----ASIPARNGYDSFHVAAKQGHL- 207
                                       H+ LET    A I   NG    H AA+ GHL 
Sbjct: 121 FPNLVMTTDSSNSTALHTAAAQGHIDVVHLLLETDPNLAKIARNNGKTVLHSAARMGHLE 180

Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           V+KALVSKDPS  FRTDKKGQTALHMAVKGQN +IV  L++PDPSV+ LEDNKGNTALHI
Sbjct: 181 VLKALVSKDPSIVFRTDKKGQTALHMAVKGQNVEIVHALLKPDPSVMSLEDNKGNTALHI 240

Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 327
           A +KGR+Q V+CLLS+EGI +N+ NKAGE+PLD+AEK G  E+ S+L+EAGA +S DHGK
Sbjct: 241 ATRKGRSQFVQCLLSVEGIKMNATNKAGETPLDIAEKFGTQEIASILREAGATNSADHGK 300

Query: 328 PPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAV 387
           PP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IAK+LKKLHISGLNNAINS+TVVAV
Sbjct: 301 PPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIAKRLKKLHISGLNNAINSATVVAV 360

Query: 388 LIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQT 447
           LIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AAF+IFFVFDSLALFISLAVVVVQT
Sbjct: 361 LIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAAFLIFFVFDSLALFISLAVVVVQT 420

Query: 448 SVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIML 507
           SVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYVVVG H+RWLAV ATVIG  IML
Sbjct: 421 SVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYVVVGSHARWLAVCATVIGSVIML 480

Query: 508 TTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 561
           TTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S+AS+ E+LNSEY+RMYAL
Sbjct: 481 TTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVSMASESELLNSEYRRMYAL 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141131|ref|XP_002323928.1| predicted protein [Populus trichocarpa] gi|222866930|gb|EEF04061.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/523 (65%), Positives = 404/523 (77%), Gaps = 70/523 (13%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET------ 161
           ERK+ KDSPGKRGD Q+HLAAR GNLSRV EILQ+ D N+ K LL+ +NQ+GET      
Sbjct: 1   ERKRPKDSPGKRGDSQIHLAARTGNLSRVREILQNSDGNDLKVLLATQNQDGETPLYAAA 60

Query: 162 -----------------------------PLYVAAESGHALIVEEMLQ------------ 180
                                        P +VAA+ GH  ++ E+L+            
Sbjct: 61  ENGHAGVVAKMLEYMNLETASVAARNGYDPFHVAAKQGHLDVLTELLRVFPNLVMTTDLS 120

Query: 181 ------------HMN-----LET----ASIPARNGYDSFHVAAKQGHL-VVKALVSKDPS 218
                       H++     LET      I   NG    H AA+ GHL +V++L+SKDPS
Sbjct: 121 CTTALHTAATQGHIDVVNLLLETDVNLVKIARNNGKTVLHSAARMGHLEIVRSLLSKDPS 180

Query: 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
           TGFRTDKKGQTALHMAVKGQNE+IVLEL++PD +V+ +EDNKGNTALHIA+ KGRTQ V 
Sbjct: 181 TGFRTDKKGQTALHMAVKGQNEEIVLELLKPDRTVMHVEDNKGNTALHIAVMKGRTQNVH 240

Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQT 338
           CLLS+EGI++N++NKAGE+PLD+AEKLG  EL S+LK+AGA +SKD GKPP+A KQLKQT
Sbjct: 241 CLLSVEGININAINKAGETPLDIAEKLGIQELVSILKKAGANNSKDCGKPPNAAKQLKQT 300

Query: 339 VSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIF 398
           VSDIKHDVQSQLQQ+RQTGF+V KIAKKLKKLHISGLNNAIN+ST+VAVLIATVAFAAIF
Sbjct: 301 VSDIKHDVQSQLQQTRQTGFRVQKIAKKLKKLHISGLNNAINNSTIVAVLIATVAFAAIF 360

Query: 399 TVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKR 458
           TVPGQYVEEK EG ++GQA++A+N AF++FFVFDSLALFISLAVVVVQTS+VVIE+KAK+
Sbjct: 361 TVPGQYVEEKIEGAAIGQANVARNPAFLVFFVFDSLALFISLAVVVVQTSIVVIEQKAKK 420

Query: 459 QLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVI 518
           QLVFVINKLMWLACLFIS AFISLTYVVVG++SRWLA+ ATVIGG IML TIGSMCYCV+
Sbjct: 421 QLVFVINKLMWLACLFISAAFISLTYVVVGKNSRWLAIYATVIGGLIMLATIGSMCYCVV 480

Query: 519 LHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 561
           LH+ME  KLRNIR+ E+R  S+SMSV SDQEILNSEY+RMYAL
Sbjct: 481 LHQMEESKLRNIRR-ETRPGSYSMSVESDQEILNSEYRRMYAL 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506142|ref|XP_003521846.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like, partial [Glycine max]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 340/527 (64%), Positives = 388/527 (73%), Gaps = 83/527 (15%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGET---------- 161
           NK+SPGKRGDL +HLAARAGNLSRV EI+Q+    E KDLL+K+N EGET          
Sbjct: 2   NKESPGKRGDLSIHLAARAGNLSRVKEIIQNYSNYETKDLLAKQNLEGETPLYVASANGH 61

Query: 162 -------------------------PLYVAAESGHALIVEEMLQ---------------- 180
                                    P ++AA+ GH  ++ E+L                 
Sbjct: 62  ALVIREILKYLDLQTVSIAAKNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTA 121

Query: 181 --------HMN-----LET----ASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFR 222
                   H++     LE+    A I   NG    H AA+ GHL VVKAL++KD STGFR
Sbjct: 122 LHTAATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDXSTGFR 181

Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           TDKKGQTALHMAVKGQNE+I++EL++PDP+VL LEDNKGNTALHIA KKGRTQ VRCLLS
Sbjct: 182 TDKKGQTALHMAVKGQNEEILMELVKPDPAVLSLEDNKGNTALHIATKKGRTQNVRCLLS 241

Query: 283 IEGIDVNSLNKAGESPLDVAEKL---GNTELF-----SLLKEAGAAHSKDHGKPPSATKQ 334
           +EGI++N+ NKAGE+PLD  +K    G T        S+L++AGAA+S D  KPP+A+KQ
Sbjct: 242 MEGININATNKAGETPLDKKKKTSHQGTTLPLHQGSPSVLRDAGAANSTDQRKPPNASKQ 301

Query: 335 LKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAF 394
           LKQTVSDIKHDVQSQLQQ+RQ G +V KIAKKLKKLHISGLNN I S+TVVAVLIATVAF
Sbjct: 302 LKQTVSDIKHDVQSQLQQTRQNGMRVQKIAKKLKKLHISGLNNVITSATVVAVLIATVAF 361

Query: 395 AAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEE 454
           AAIFTVPGQYVE KT GFSLGQA+IA NAAF+IFFVFDS+ALFISLAVVVVQTSVVVIE+
Sbjct: 362 AAIFTVPGQYVEGKTHGFSLGQANIANNAAFLIFFVFDSMALFISLAVVVVQTSVVVIEQ 421

Query: 455 KAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMC 514
           K K+QLVFVINKLMW+ACLFISIAFISLTYVVVG HSRWLA+ ATVIG  IML+TIGSMC
Sbjct: 422 KTKKQLVFVINKLMWMACLFISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMC 481

Query: 515 YCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 561
           YCVILHRME  KLR      + SRSFSMS ASDQEILNSEYKRMYAL
Sbjct: 482 YCVILHRMEETKLR------AESRSFSMSHASDQEILNSEYKRMYAL 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	561
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.985	0.835	0.532	5.6e-139
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.975	0.872	0.498	2.5e-129
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.766	0.791	0.483	1.4e-101
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.718	0.769	0.449	1.3e-84
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.745	0.708	0.390	1.6e-70
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.771	0.813	0.376	8.9e-70
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.695	0.642	0.410	3.1e-67
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.664	0.623	0.265	1e-23
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.237	0.230	0.300	2.7e-19
UNIPROTKB|F1M5N3	3838	Ank2 "Protein Ank2" [Rattus no	0.385	0.056	0.344	3e-19

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 305/573 (53%), Positives = 376/573 (65%)

Query:     2 IMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDK--PPSALGPMEKQ 59
             +MEK  SF   TME+Q+S R    EKQ S R VME+Q SF GE   K   P   G     
Sbjct:    97 VMEKLPSFGRATMERQKSFRGGFLEKQKSFRVVMERQLSFIGERRKKNESPGKRGDSSLH 156

Query:    60 QSFHGVTIDK-QPSTRGVMEKQKSF--RGFIEKQKSFRVVMERQLSFIGGGERKKNKDSP 116
              +     + K +   RG  ++ K    +  +E +       E   S +   E  K+ D  
Sbjct:   157 IAARTGNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVE-EMLKHMDLE 215

Query:   117 -----GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
                   + G    H+AA+ G+L  V++IL     N    L    +    T L+ AA  GH
Sbjct:   216 TASIAARNGFDPFHVAAKQGHLE-VLKILLETFPN----LAMTTDLSCTTALHTAATQGH 270

Query:   172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTA 230
               +V  +L+  +   A I   NG  + H AA+ GH+ VVK+L+ KDPS GFRTDKKGQTA
Sbjct:   271 IDVVNLLLE-TDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTA 329

Query:   231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 290
             LHMAVKGQN+ IV+EL++PD +VL +EDNKGNT LHIA  KGR +IVRCL+S EGI++N 
Sbjct:   330 LHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNP 389

Query:   291 LNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQL 350
             +NKAG++PLDV+EK+GN EL S+LKEAGAA +KD GKP +  KQLKQTVSDIKH+VQSQL
Sbjct:   390 INKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQL 449

Query:   351 QQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE 410
             QQSRQTG               SGLNNAINS+TVVAVLIATVAFAAIFT+PGQY E++++
Sbjct:   450 QQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRSK 509

Query:   411 GFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWL 470
             G  LGQAHIA  A F++FF+FDSLALFISLA          IE+KAK++LVFVINKLMW 
Sbjct:   510 GELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWC 569

Query:   471 ACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNI 530
             ACLFISIAF+SL+Y+VVG+   WLAV ATVIGGTIMLTTIG+MCYCV++HRME  KLR+I
Sbjct:   570 ACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESKLRSI 629

Query:   531 RKAEXXXXXXXXXXX-XDQEILNSEY-KRMYAL 561
             RK               D +ILN EY KRMYAL
Sbjct:   630 RKERSKSQSFSMSRMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 288/578 (49%), Positives = 374/578 (64%)

Query:     3 MEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSF---NGE---STDKPPS-ALGP 55
             MEKQ     R ME+Q+S R    EKQ S R VME+Q SF    GE    TD P      P
Sbjct:    62 MEKQE----RAMERQRSFRGFV-EKQKSFRVVMERQLSFMNVGGERKKKTDSPGKRGDSP 116

Query:    56 ME--KQQSFHGVTIDKQPSTRGVME-KQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKN 112
             +    +    G  ++   +  G+ E K+ S +  +E +       E   S +   E  K+
Sbjct:   117 LHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVE-EMLKH 175

Query:   113 KDSP-----GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
              D        + G    H+AA+ G++  + ++L++       +L    +    T L+ AA
Sbjct:   176 MDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFP-----NLAMTVDLSCTTALHTAA 230

Query:   168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKK 226
               GH  +V  +L+  +   A I   NG  + H AA+ GH  VVK+L+  D S GFRTDKK
Sbjct:   231 SQGHTDVVNLLLK-TDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKK 289

Query:   227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
             GQTALHMAVKGQNE IVLEL++PDP++L +ED+KGNT LH A  KGR +IVRCL+S +GI
Sbjct:   290 GQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGI 349

Query:   287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDV 346
             ++N++NKAG++ LD+AEK+GN EL S+LKEAGAA +KD GKP +  KQL QTVSDIKH+V
Sbjct:   350 NLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQLNQTVSDIKHEV 409

Query:   347 QSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVE 406
             QSQLQQSRQTG               +GLNNAINS+TVVAVLIATVAFAAIFT+PGQY E
Sbjct:   410 QSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEE 469

Query:   407 EKTEGFSL-GQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVIN 465
             ++T+G  L G+A IA  A F++FF+FDSLALFISLA          IE+KAK+ LVFVIN
Sbjct:   470 DRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVIN 529

Query:   466 KLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAK 525
             KLMWLACLFIS+AF+SL+++VVG+   WLA+ AT+IGGTIMLTTIG+MCYCV++HR+E  
Sbjct:   530 KLMWLACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEES 589

Query:   526 KLRNIRKAEXXXXXXXXXXX-XDQEILNSEY-KRMYAL 561
             KL+++RK               + EILN E+ KRMYAL
Sbjct:   590 KLKSLRKERSKSKSFSLSHMPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 215/445 (48%), Positives = 295/445 (66%)

Query:   125 HLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL 184
             H+AA+ G+L  V+++L    A    +L    +    T L+ AA  GH  +V  +L+ +  
Sbjct:   106 HIAAKQGDLD-VLKVL----AEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLE-LGS 159

Query:   185 ETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
               A I   NG  + H A++ GH+ V+KAL++ +P+   R DKKGQTALHMAVKG N ++V
Sbjct:   160 SLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVV 219

Query:   244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 303
              ELI+ D S + + D KGNTALHIA +KGR+QIV+ LL+    D  ++N++GE+ LD AE
Sbjct:   220 EELIKADRSSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAE 279

Query:   304 KLGNTELFSLLKEAGAAHSKDHGKP--PSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXX 361
             K+GN E+  +L++ G   +K   KP  P+  ++LKQTVSDIKH+V +QL+ +R T     
Sbjct:   280 KIGNPEVALILQKHGVPSAKTI-KPSGPNPARELKQTVSDIKHEVHNQLEHTRLTRKRVQ 338

Query:   362 XXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKT---EGFSLGQAH 418
                         GLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE+ +   +G SLG+A+
Sbjct:   339 GIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEAN 398

Query:   419 IAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIA 478
             IA    FIIFF+FDS+ALFISLA          IE KAK+Q++ VINKLMWLAC+ IS+A
Sbjct:   399 IASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVA 458

Query:   479 FISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXX 538
             F++L++VVVGE  +WLA+  T IG TIM+TT+G+MCY +I H++EA  LRNIR++     
Sbjct:   459 FLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTMCYWIIQHKIEAANLRNIRRSSINSI 518

Query:   539 XXXXXX--XXDQEILNSEYKRMYAL 561
                       D +IL +E K+MYA+
Sbjct:   519 SGSWGIPQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 188/418 (44%), Positives = 268/418 (64%)

Query:   118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
             K G    H+AA+ GNL +V+++L   +AN   +L    +    T L+ AA  GH  IV  
Sbjct:    89 KNGFDAFHIAAKNGNL-QVLDVL--IEANP--ELSFTFDSSKTTALHTAASQGHGEIVCF 143

Query:   178 MLQHMNLETASIPARNGYDSFHVAAKQGH-LVVKALVSKDPSTGFRTDKKGQTALHMAVK 236
             +L    ++ A+I   NG  + H AA+ GH ++VK L+ K      R DKKGQTALHMAVK
Sbjct:   144 LLDK-GVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVK 202

Query:   237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE 296
             GQN +IV  L+  D S++   DNKGNT LHIA++K R +IV+ +L    +   ++NK+GE
Sbjct:   203 GQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGE 262

Query:   297 SPLDVAEKLGNTELFSLLKEAGAAHSK-----DHGKPPSATKQLKQTVSDIKHDVQSQLQ 351
             + LD+AEK G  E+  LL++ G  +++     +  +P  ++++LK+TVS+I H+V +QL+
Sbjct:   263 TALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLE 322

Query:   352 QSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE- 410
             Q+ +T                 GLNNAINS+T+VA+LIATVAFAAIF VPGQY ++  + 
Sbjct:   323 QTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDV 382

Query:   411 --GFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLM 468
               G+SLG+A  A    F+IF VFDS ALFISLA          IE +AK+Q++ +INKLM
Sbjct:   383 PPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLM 442

Query:   469 WLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKK 526
             W+AC+ IS+AF+SL++VVVGE  + LAV  T IG  IM++T+G+MCY VI +R+E  K
Sbjct:   443 WMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWVIANRIEGSK 500

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 173/443 (39%), Positives = 254/443 (57%)

Query:   124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
             LH+AA  G+ + ++E+L   DA  ++           TPL  AA  GH  +V ++L    
Sbjct:   168 LHIAAIQGHHA-IVEVLLDHDATLSQTF----GPSNATPLVSAAMRGHTEVVNQLLSKAG 222

Query:   184 LETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
                  I   N  ++ H+AA+QGH+ V+KAL+SKDP    R DKKGQTALHMAVKGQ+ ++
Sbjct:   223 -NLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEV 281

Query:   243 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
             V  L+  DP+++   D   NTALH+A +K R +IV  LLS+   + N+L +  ++ LD+A
Sbjct:   282 VKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIA 341

Query:   303 EKLGNTELFSLLKE----AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGF 358
             E L  +E  S +KE    +GA  + +  +P     +L+ TV+ IK+DV  QL+Q+++T  
Sbjct:   342 EGLPLSEESSYIKECLARSGALRANELNQPRD---ELRSTVTQIKNDVHIQLEQTKRTNK 398

Query:   359 XXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAH 418
                            G+NNA NS TVVAVL ATVAFAAIFTVPG    +  +G     A 
Sbjct:   399 NVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG---DNNDG----SAV 451

Query:   419 IAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIA 478
             +   A+F IFF+F++LALF SLA           E KA++++V VINKLMWLA +  S+A
Sbjct:   452 VVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVA 511

Query:   479 FISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXX 538
             F++ +Y+VVG  + W A   TV+GG IM   +G+M Y V+    ++K+ R++RK      
Sbjct:   512 FLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVV----KSKRTRSMRKKVKSAR 567

Query:   539 XXXXXXXXDQEILNSEYKRMYAL 561
                       +  NSE   ++A+
Sbjct:   568 RSGSNSWHHSDFSNSEVDPIFAI 590

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 170/451 (37%), Positives = 253/451 (56%)

Query:   119 RGDLQ-LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
             + D+   H+AA+ G+L  V E+L+        +L    +    +PLY AA   H  IV  
Sbjct:    92 KSDMNAFHVAAKRGHLGIVKELLRLWP-----ELCRICDASNTSPLYAAAVQDHLEIVNA 146

Query:   178 MLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVK 236
             ML  ++   A I  +NG  S H A + G L +VKAL+ KD +     DKKGQTALHMAVK
Sbjct:   147 MLD-VDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVK 205

Query:   237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE 296
             G++ ++V E+++ D ++L   D KGNTALHIA +K R QI   LL+   I+VN++N   E
Sbjct:   206 GRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKE 265

Query:   297 SPLDVAEKLGNTE----LFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQ 352
             + +D+A+KL  +E    +   L EAGA H +  G+   A + LK+ VSDIKH+VQSQL Q
Sbjct:   266 TAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEA-RALKRAVSDIKHEVQSQLLQ 324

Query:   353 SRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGF 412
             + +T                  + N  NS TVVAVL A++AF AIF +PGQY    TEG 
Sbjct:   325 NEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYF---TEGS 381

Query:   413 SLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLAC 472
              +GQA+IA    F +F + ++ +LFISLA           + +A++++V V+NKLMW AC
Sbjct:   382 HVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAAC 441

Query:   473 LFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA--KKLRNI 530
                  AF+++ + VVG+ + W+A++ T++G  I++ T+ SMCY V   R  +     R I
Sbjct:   442 ACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRI 501

Query:   531 RKAEXXXXXXXXXXXXDQEILNSEYKRMYAL 561
             R+                    S+++++ AL
Sbjct:   502 RRGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 171/417 (41%), Positives = 247/417 (59%)

Query:   124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKK-NQEGETPLYVAAESGHALIVEEMLQHM 182
             LH+A   G+ S V  +L+    +E +  LSK   Q   TPL  AA  GH+ +V E+L   
Sbjct:   182 LHIACSQGHRSIVQLLLE----HEPQ--LSKTVAQSNATPLVSAATRGHSEVVNELLAK- 234

Query:   183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
             +     I   NG ++ H+AA+QGH+ +V+ L+ KDP    RTDKKGQT+LHMAVKG +  
Sbjct:   235 DSSLLEISRSNGKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQ 294

Query:   242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301
             +V  L+R DP+++ L D  GNT LHIA +K R +IV  LL +   +VN+L +  ++  D+
Sbjct:   295 VVRLLLRADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDI 354

Query:   302 AEKLGNTELFSLLKE----AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTG 357
             AE L ++E  + +KE     GA  + +  +P     +L++TV++IK DV +QL+Q+R+T 
Sbjct:   355 AEGLTHSEETAEIKEILSRCGALKANELNQPRD---ELRKTVTEIKKDVHTQLEQTRKTN 411

Query:   358 FXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQA 417
                            +G+NNA NS TVVAVL ATVAFAAIFTVPG    +   G ++   
Sbjct:   412 KNVDGIAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGG---DDDHGVAV-MV 467

Query:   418 HIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISI 477
             H     +F IFF+F+++ALF SLA           E K +R++V VINKLMWLA +  ++
Sbjct:   468 HAT---SFKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTV 524

Query:   478 AFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAE 534
             AFIS +Y+VVG  +R+ AV  TVIG   M   +  M Y V+    ++K+ R +RK E
Sbjct:   525 AFISSSYIVVGRRNRYAAVVVTVIGTVTMTGILSIMTYYVV----KSKRTRIVRKKE 577

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 104/391 (26%), Positives = 176/391 (45%)

Query:   150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQ-HMNLETASIPARNGYDSFHVAAKQGHL- 207
             +L+   ++E  T L+ A +SG+  +   +L   +N E A    ++G    H A   G + 
Sbjct:   188 NLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVE 247

Query:   208 VVKALVSKDPSTGFRTDKKG--QTALHMAVKGQNEDIVLELIRPDP--SVLKLEDNKGNT 263
             ++K  + K PS+ F    +G  +T  H+A K Q     + + +      +L   D + NT
Sbjct:   248 ILKEFLCKAPSS-FNITTQGTIETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNT 306

Query:   264 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK 323
              LH+A     T +VR +LS   IDV   NK G + +D+ +K G    F LL       ++
Sbjct:   307 VLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEGVD--FPLLSLWFRDEAE 364

Query:   324 DHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXX----XXXXXXSGLNNAI 379
                +P    K   + V  I++    +   S                         L NA 
Sbjct:   365 KIQRPARYVKFAHEPVELIRNTNNGEKLSSESRAMDLLREGRDPRNKEREMHSESLQNAR 424

Query:   380 NSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFIS 439
             N+ T+VAVLIA+VAF      PG  V +  +G  +G+A   +  AF IF V +++ALF S
Sbjct:   425 NTITIVAVLIASVAFTCGINPPGG-VHQ--DGPFIGKATAGRTLAFKIFSVANNIALFTS 481

Query:   440 LAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVV--GEHSRWLAVS 497
             L+             KA +  V + +K+MWLA   ++ A+ +  ++ V   E S+WL  +
Sbjct:   482 LSIVTLLVSIISYRTKALKMCVVIAHKMMWLAVASMATAYAASAWITVPHNEGSKWLVYT 541

Query:   498 ATVIGGTIMLTTIGSMCYCVILHRMEAKKLR 528
              + I    + +    + + ++ H ++  KLR
Sbjct:   542 TSAIASVALGSMFVYVSFMMVKHILKKDKLR 572

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 43/143 (30%), Positives = 80/143 (55%)

Query:   375 LNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSL 434
             L NA N+  +VAVLIA+VA+A     PG   ++   G   G++ + K  AF +F + +++
Sbjct:   401 LQNARNTIAIVAVLIASVAYAGGINPPGGVYQD---GPWRGKSLVGKTTAFKVFAICNNI 457

Query:   435 ALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEH--SR 492
             ALF SL            + K  ++L+   +++MW++  F++ A+I+ ++V +  +  ++
Sbjct:   458 ALFTSLGIVILLVSIIPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPHYHGTQ 517

Query:   493 WL--AVSATVIGG--TIMLTTIG 511
             WL  A+ A V GG  T++   +G
Sbjct:   518 WLFPAIVA-VAGGALTVLFFYLG 539

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

UNIPROTKB|F1M5N3 Ank2 "Protein Ank2" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 80/232 (34%), Positives = 126/232 (54%)

Query:   119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
             RG+  LH+AARAG +  V  +L+    N A  L+  + +E +TPL++A+  G   IV+ +
Sbjct:   441 RGETALHMAARAGQVEVVRCLLR----NGA--LVDARAREEQTPLHIASRLGKTEIVQLL 494

Query:   179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
             LQHM    A+    NGY   H++A++G + V +++ +  +      KKG T LH+A K  
Sbjct:   495 LQHMAHPDAA--TTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYG 552

Query:   239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
             + D+   L++   +      N G T LHIA KK + QI   LL+  G + N++ K G +P
Sbjct:   553 SLDVAKLLLQRRAAADSAGKN-GYTPLHIAAKKNQMQIASTLLNY-GAETNTVTKQGVTP 610

Query:   299 LDVAEKLGNTELFSLLKEAGA-AHSKDHGKPPS---ATKQLKQTVSDI--KH 344
             L +A + G+T++ +LL E GA  H        S   A ++ K  V+DI  KH
Sbjct:   611 LHLASQEGHTDMVTLLLEKGANIHMSTKSGLTSLHLAAQEDKVNVADILTKH 662

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	561
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	4e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	8e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	2e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	4e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
COG1914	416	COG1914, MntH, Mn2+ and Fe2+ transporters of the N	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  117 bits (296), Expect = 2e-31
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 374 GLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKN-AAFIIFFVFD 432
            L    NS  VVA LIATV FAA FT PG Y ++   G   G   +A     F  FFV +
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQD-DGGHHAGTPILAGKPRRFKAFFVSN 61

Query: 433 SLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVV 486
           ++A   SL  V++   +V    +   +L   +  L+WL+ L + +AF + +Y V
Sbjct: 62  TIAFVASLVAVILLLYIVPSFSRRLPRL-LALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (259), Expect = 3e-26
 Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 192 RNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 250
            +G    H+AA  GHL VVK L+          D  G+T LH+A K  + +IV  L+   
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 251 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310
             V    D  GNT LH+A + G   +V+ LL   G DVN+ +K G +PL +A K G+ E+
Sbjct: 64  ADV-NARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 311 FSLL 314
             LL
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 223 TDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
            D+ G+T LH+A    + ++V  L+    D +    +DN G T LH+A K G  +IV+ L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA---KDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 281 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           L  +G DVN+ +K G +PL +A + GN ++  LL + GA
Sbjct: 60  LE-KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 10/125 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAA  G+L  V  +L++     AKD       +G TPL++AA++GH  IV+ +L+   
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKD------NDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 184 LETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
               +   ++G    H+AA+ G+L VVK L+        R DK G+T LH+A K  + ++
Sbjct: 65  --DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEV 121

Query: 243 VLELI 247
           V  L+
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT--ALHIAIKKGRTQIVRCLLSIEGIDV 288
           LH+A K  N ++V  L+     V     N G+T  ALH+A + G  +IV+ LL   G DV
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV-----NLGDTDTALHLAARNGNLEIVKLLLE-HGADV 54

Query: 289 NSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           N+ +K G + L +A + GN E+  LL E GA
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 198 FHVAAKQGHL-VVKALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 255
            H+AAK G+L +VK L+ K        TD    TALH+A +  N +IV  L+     V  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 256 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 292
            +D  GNTALH+A + G  +IV+ LL   G D+N  +
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE-HGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 73.7 bits (180), Expect = 1e-14
 Identities = 56/195 (28%), Positives = 73/195 (37%), Gaps = 13/195 (6%)

Query: 144 DANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVA 201
                  L      + +  LY+      A  + E L    +    + AR  +G    H A
Sbjct: 22  ALLLLLSLDLSNPSDKKLNLYLELALLPAASLSE-LLLKLIVDRHLAARDLDGRLPLHSA 80

Query: 202 AKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE-----DIVLELIR--PDPSV 253
           A +G   +VK L++         D  G T LH+A    N      ++   L+    D  V
Sbjct: 81  ASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139

Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
             L D  GNT LH A   G   IV  LL   G D NS N  G + LD A K G  EL  L
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKL 198

Query: 314 LKEAGAAHSKDHGKP 328
           L + G   S      
Sbjct: 199 LLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
           D  G T LH+A   G  ++V+ LL   G DVN+ +  G +PL +A K G+ E+  LL E 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 318 GA-AHSKDH 325
           GA  +++D 
Sbjct: 63  GADVNARDK 71

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 13/109 (11%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E   + ++    G   LHLAA+ G+L  V  +L+      A+D       +G TPL++AA
Sbjct: 28  ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK------DGNTPLHLAA 81

Query: 168 ESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALV 213
            +G+  +V+ +L+H     A + AR+  G    H+AAK GHL VVK L+
Sbjct: 82  RNGNLDVVKLLLKHG----ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 39/225 (17%)

Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPL--YVAAESGH 171
           ++P + G   LHL         V+++L    A+     ++ K++ G TPL  Y++  + +
Sbjct: 77  NAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD-----VNAKDKVGRTPLHVYLSGFNIN 131

Query: 172 ALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL---VVKALVSKDPSTGFRTDKK 226
             ++  +L+      A + A +  G     V  K  +    +++ L+       +  D +
Sbjct: 132 PKVIRLLLRK----GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV-YAVDDR 186

Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLK----------LEDNKGNTALHIAIKKG--RT 274
            ++ LH           L+  +P   +++            D  GNT LH        + 
Sbjct: 187 FRSLLH---------HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKR 237

Query: 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            +V  LL I GI +N+ N+ G++PL  A    N      L   GA
Sbjct: 238 SLVLPLL-IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 15/97 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAA+ GNL  V  +L+      A   L   +    T L++AA +G+  IV+ +L+H  
Sbjct: 1   LHLAAKNGNLELVKLLLE----KGADVNLGDTD----TALHLAARNGNLEIVKLLLEH-- 50

Query: 184 LETASI--PARNGYDSFHVAAKQGHL-VVKALVSKDP 217
              A +    ++G  + H+AA+ G+L +VK L+    
Sbjct: 51  --GADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 35/196 (17%)

Query: 132 NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA--ESGHALIVEEMLQH---MNLET 186
           NL+ V EI++      A   ++  +  G TPL  A   +S    IVE +L +   +N++ 
Sbjct: 81  NLTDVKEIVKLLLEYGA--NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN 138

Query: 187 ASIPARNGYDSFHVAAKQGHL---VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
           +     +G +  H+  +   +   ++K L+ K    G   + K              + +
Sbjct: 139 S-----DGENLLHLYLESNKIDLKILKLLIDK----GVDINAK-----------NRVNYL 178

Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 303
           L    P    + ++D  G T LH A+     + V+ LL   G + N +NK G++PL +A 
Sbjct: 179 LSYGVP----INIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAI 233

Query: 304 KLGNTELFSLLKEAGA 319
              N E+F LL   G 
Sbjct: 234 LNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
           L+   P  L   D  GNT LH+A K G  ++V+  L   G+D+N  +  G + LD+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQ-WLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 212 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
           L+   P     TD  G T LH+A K    ++V  L++P    L L D+ G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
           TALH A      ++V  L+     + +  D  GNTALHIA + G  ++++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
            GNT LH+A + G  ++V+ LL   G DVN+ +K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE-AGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 194 GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 247
           G  + H AA  G L +VK L+ K      RTD+ G TALH+A +  N +++  L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 314
           G TALH A   GR ++V+ LL  +G+D+N  ++ G + L +A + GN E+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 49/170 (28%), Positives = 67/170 (39%), Gaps = 23/170 (13%)

Query: 172 ALIVEEMLQHM----NLETASIPARNGYDSFHVAAKQGHLVVKAL-----------VSKD 216
            +I++  LQH     +L    +   NG +          L V +               D
Sbjct: 491 VVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLD 550

Query: 217 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 276
           P  G   D KG+T LH+A     ED VL L++   +V  + D  GNTAL  AI     +I
Sbjct: 551 PDIG---DSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKI 606

Query: 277 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-TELFSLLKEAGAAHSKDH 325
            R L     I   S   A    L  A K  + T +  LLK+     S+DH
Sbjct: 607 FRILYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH 653

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 49/224 (21%), Positives = 86/224 (38%), Gaps = 34/224 (15%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
            R  N + P  R    LH+  +  N   +            K+++   N+       VA 
Sbjct: 58  TRGHNVNQPDHRDLTPLHIICKEPNKLGM------------KEMIRSINKCSVFYTLVA- 104

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGY------DSFHVAAKQGH-----LVVKALVSKD 216
                  +++   + N+E   I   N Y      D  ++  K         + K L+S  
Sbjct: 105 -------IKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 217 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 276
                +   KG TALH A + +++ +   L+    +V  + D   N+ LH A+K     I
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPI 216

Query: 277 VRCLLSIEGIDVNSLNKAGESPLDVA-EKLGNTELFSLLKEAGA 319
           V  LL   G   ++ +K G +PL ++     + ++  LL E G 
Sbjct: 217 VHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV 259

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
           D  G T LHIA   G  Q+VR LL   G D   L+K G++PL++AE+ G  E+  LL   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Query: 318 GAAHSK--DHGKPPSATKQ 334
              H +   + KP S T +
Sbjct: 171 SQCHFELGANAKPDSFTGK 189

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 41/202 (20%), Positives = 89/202 (44%), Gaps = 19/202 (9%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           G   +H+A +  N   ++++L      E     + K+  GE+PL+ AAE G    ++ ++
Sbjct: 157 GCYPIHIAIKH-NFFDIIKLLL-----EKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
            H N        +NG+   H A       ++ L++   ++    D  G T LH A+    
Sbjct: 211 DHGN--HIMNKCKNGFTPLHNAIIHNRSAIELLINN--ASINDQDIDGSTPLHHAINPPC 266

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKK-GRTQIVRCLLSIEGIDVNSLNKAGESP 298
           +  +++++    + + ++DNKG   +  A K   +  +++ +++    +   + +A +  
Sbjct: 267 DIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIA----NAVLIKEADKLK 322

Query: 299 ----LDVAEKLGNTELFSLLKE 316
               L+  E   N E    +KE
Sbjct: 323 DSDFLEHIEIKDNKEFSDFIKE 344

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR-NGYDSFHVAAKQGHLV 208
           D+  K   +G T L+ A E+    + E +L +      +IP + N     H        +
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYG--ANVNIPDKTNNSPLHHAVKHYNKPI 216

Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           V  L+    ST  R DK G T LH++V   ++ DI+  L+     V       G TALH 
Sbjct: 217 VHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304
           +IK  R      LL   G D+NSLN    +PL  A K
Sbjct: 276 SIKSER---KLKLLLEYGADINSLNSYKLTPLSSAVK 309

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 33/184 (17%)

Query: 157 QEGETPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQG-HLVVKAL 212
            E  TPL  A  SG A IVE  ++H   +N     IP          A K G H ++K L
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIP-----HPLLTAIKIGAHDIIKLL 87

Query: 213 VSKDPSTGF----------------------RTDKKGQTALHMAVKGQNEDIVLELIRPD 250
           +     T                          D + +T LH A+K  + + +  L    
Sbjct: 88  IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147

Query: 251 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310
             V  +ED+ G   +HIAIK     I++ LL  +G   N  +  GESPL  A + G+   
Sbjct: 148 ADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESPLHNAAEYGDYAC 205

Query: 311 FSLL 314
             LL
Sbjct: 206 IKLL 209

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 62/240 (25%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH------------ 171
           LH A++A +LSR++  L    A+     ++ KN +GETPLY+ A++G+            
Sbjct: 277 LHHASQAPSLSRLVPKLLERGAD-----VNAKNIKGETPLYLMAKNGYDTENIRTLIMLG 331

Query: 172 -------ALIVEEMLQHMNLET------------ASIPARNGYDS--FHVAAKQGHLVV- 209
                   L +  + Q   L+             A++ AR+  D    H AA + ++V+ 
Sbjct: 332 ADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVII 391

Query: 210 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN------- 262
             L+         + K G TALH A+ G N         P  SV  L D   N       
Sbjct: 392 NTLLDYGADIEALSQKIG-TALHFALCGTN---------PYMSVKTLIDRGANVNSKNKD 441

Query: 263 --TALHIAIKKG-RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             T LH A KK  +  ++  LL   G DVN++N   + PL +A  L    + ++L   GA
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLD-NGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGA 498

Length = 682

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 168 ESGHALI-VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVS---KDPSTGF-- 221
           ES H +  +EEM+   N E        G + FH AA+ G   + A  +   +        
Sbjct: 2   ESPHFMTCLEEMIAEKNSE--------GENFFHEAARCGCFDIIARFTPFIRGDCHAAAL 53

Query: 222 -RTDKKGQTALHMAVKGQNEDIVLELIRP----DPSVLKLEDNKGNTALHIAIKKGRTQI 276
             TD  GQ  +H+A +     +  E+I         +   E  +G+TALH+A  +    +
Sbjct: 54  NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDL 113

Query: 277 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              L    GID++  N   +SP ++A    +  +  +L+E  A
Sbjct: 114 AEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA 156

Length = 169

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 48/213 (22%), Positives = 71/213 (33%), Gaps = 46/213 (21%)

Query: 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG-HLVVKALV-- 213
            + E     AAE G    V   L+       + P R G  +  VAA +  +L +  L+  
Sbjct: 15  SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLN 74

Query: 214 -SKDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRPDPSVLKLEDN--------K 260
            S   + G        T LH             ++  L     S      N         
Sbjct: 75  LSCRGAVG-------DTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTP 127

Query: 261 GNTALHIAIKKGRTQIVRCLLS--------------IEGIDVNSLNKAGESPLDVAEKLG 306
           G TALH+A  +   +IV+ LL               ++   V+S    GESPL+ A  LG
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF-YHGESPLNAAACLG 186

Query: 307 NTELFSLLKEAGAAHSKDHGKPPSATKQLKQTV 339
           +  + +LL E                  L  T+
Sbjct: 187 SPSIVALLSE--------DPADILTADSLGNTL 211

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 11/196 (5%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A  A NL  V  +L +   N     +++ +    TPL++  +  + L ++EM++ +N
Sbjct: 41  LHQAVEARNLDVVKSLL-TRGHN-----VNQPDHRDLTPLHIICKEPNKLGMKEMIRSIN 94

Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
             +         D+F+      ++ +  ++  +     +T                 +I 
Sbjct: 95  KCSVFYTLVAIKDAFN----NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEIT 150

Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 303
             L+     +   + +KGNTALH A +    ++   LL   G +VN  +K   SPL  A 
Sbjct: 151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHHAV 209

Query: 304 KLGNTELFSLLKEAGA 319
           K  N  +  +L E GA
Sbjct: 210 KHYNKPIVHILLENGA 225

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPS 218
           E+ L+ A E G    VEE+L  +      +  ++G    H+A     L ++K L+++   
Sbjct: 69  ESELHDAVEEGDVKAVEELLD-LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD 127

Query: 219 TGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
                TDK   + LH+AV   +   + EL+    + L +ED  G T L IA+ KG   I 
Sbjct: 128 PDIPNTDKF--SPLHLAVMMGDIKGI-ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAIC 184

Query: 278 RCLLSIEGIDVNSLNKAG 295
           + LL   G +++   K G
Sbjct: 185 KMLLD-SGANIDYFGKNG 201

Length = 413

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDP-SVLKL-----------EDNKGNTALHIAIKK 271
           ++ G+  +H+     N D        DP   LKL           E   GNT LHIA+  
Sbjct: 52  NRHGKQCVHIVS---NPDKA------DPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT 102

Query: 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              ++   L +  G+++  LN A ++P  VA +  + ++ ++L+  GA
Sbjct: 103 QNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA 150

Length = 154

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 56/232 (24%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEIL---------QSCDANEAKDLLSKKNQEGET 161
            N    G  GD  LH  +        +E +         +S     A D  + +   G T
Sbjct: 73  LNLSCRGAVGDTLLHAISL--EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGIT 130

Query: 162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGF 221
            L++AA   +  IV+ +L+      AS+PAR   D F              V       F
Sbjct: 131 ALHLAAHRQNYEIVKLLLE----RGASVPARACGDFF--------------VKSQGVDSF 172

Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI---------KKG 272
                G++ L+ A    +  IV  L   DP+ +   D+ GNT LH+ +         ++ 
Sbjct: 173 Y---HGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEEL 228

Query: 273 RTQI----------VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 314
             Q+          +R    +E I    LN  G +PL +A K G   LF L 
Sbjct: 229 SCQMYNFALSLLDKLRDSKELEVI----LNHQGLTPLKLAAKEGRIVLFRLK 276

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 221 FRTDKKGQTALHMAVKGQNEDIVLE---LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
            R D  G+   HM       + V++   L+     +   E   GNT LHIA      ++ 
Sbjct: 51  HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELA 110

Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
             L    G+++ ++N   E+   +A K+ +  +  +L+  GA 
Sbjct: 111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV 153

Length = 166

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
            GNT LH+A + G  ++V+ LL   G D+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLE-HGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 42/213 (19%)

Query: 121 DLQLHLAARAGNLSRVMEILQ---SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
              L   A  GN + + E+L+     D  ++K         G TPL++AA  G+   V  
Sbjct: 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSK---------GRTPLHIAASKGYEDCVLV 576

Query: 178 MLQH---MNLETASIPARNGYDSFHVAAKQGHLVVKALV-----SKDPSTGFRTDKKGQT 229
           +L+H   +++  A     NG  +   A    H  +  ++       DP            
Sbjct: 577 LLKHACNVHIRDA-----NGNTALWNAISAKHHKIFRILYHFASISDPHA-------AGD 624

Query: 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
            L  A K  +   + EL++   +V   ED++G TAL +A+ +    +VR LL + G DV+
Sbjct: 625 LLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVR-LLIMNGADVD 682

Query: 290 SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 322
             N          +    TEL  LL++    HS
Sbjct: 683 KAN--------TDDDFSPTELRELLQKRELGHS 707

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
            G T LH+A + G  ++V+ LL  +G D+N
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLD-KGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 57/192 (29%), Positives = 89/192 (46%), Gaps = 25/192 (13%)

Query: 135 RVMEIL--QSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR 192
            + E+L     D N AKD+         TP++ AAE G+A +V  +L +      +I A 
Sbjct: 159 LIAEMLLEGGADVN-AKDIYCI------TPIHYAAERGNAKMVNLLLSYG--ADVNIIAL 209

Query: 193 NGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
           +       A    ++  +KA++    +       K   +L  A++  NED+   L+  D 
Sbjct: 210 DDLSVLECAVDSKNIDTIKAIIDNRSNI-----NKNDLSLLKAIR--NEDLETSLLLYDA 262

Query: 252 --SVLKLEDNKGNTALHIAIKK-GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-N 307
             SV  ++D K NT LH A +    +++V  LL   G DVN+ N  GE+PL +  K G +
Sbjct: 263 GFSVNSIDDCK-NTPLHHASQAPSLSRLVPKLLE-RGADVNAKNIKGETPLYLMAKNGYD 320

Query: 308 TELFSLLKEAGA 319
           TE    L   GA
Sbjct: 321 TENIRTLIMLGA 332

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 40.6 bits (94), Expect = 0.001
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 120 GDLQLHLAARAGNLSR----VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIV 175
           GD  LHLAA  GN       V ++L   +A    D+ + ++++G TPL+ AA +G A IV
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLL--LEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 176 EEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMA 234
           E +L+       +     G  +   AAK G + +VK L+ K              A    
Sbjct: 164 ELLLEA--GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANV 221

Query: 235 VKGQNEDIVLELIRP 249
            K +N   +  LI  
Sbjct: 222 SK-RNILNLTSLIIA 235

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 192 RNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMA 234
            NG    H+AAK G L +V+ L+ K        D  G TAL +A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 225 KKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           K G T LH+A   +  DI+  LI    DP +    +    + LH+A+  G  + +  L+ 
Sbjct: 100 KDGMTPLHLATILKKLDIMKLLIARGADPDI---PNTDKFSPLHLAVMMGDIKGIELLID 156

Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            +   ++  +  G +PL +A   G+  +  +L ++GA
Sbjct: 157 HKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192

Length = 413

>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 360 VHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAI---FTVPGQYVEEKTEGFSLGQ 416
             K  + L+ L  S ++  I     + V +A +  AA     + P Q V +  + + L  
Sbjct: 220 GIKGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLL- 278

Query: 417 AHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMW-----LA 471
           A +  +AAF++F V   LA  +S  VV      +V+E     ++     +L+      + 
Sbjct: 279 APLLGSAAFVLFGVA-LLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVP 337

Query: 472 CLFISIAFISLTYVVV 487
            L I I F     ++V
Sbjct: 338 GLAIIILFGDPARLLV 353

Length = 416

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
           +G TPL++AA +GH  +V+ +L+      A + AR+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG----ADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	561
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA03095	471	ankyrin-like protein; Provisional	99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PF13962	113	PGG: Domain of unknown function	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.29
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.27
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.25
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.22
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.16
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.73
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.71
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.65
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.55
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.54
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.54
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.46
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.45
KOG0522	560	consensus Ankyrin repeat protein [General function	98.45
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.37
KOG0522	560	consensus Ankyrin repeat protein [General function	98.34
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.29
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.26
PF13606	30	Ank_3: Ankyrin repeat	98.26
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.15
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.13
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.06
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.98
KOG2384	223	consensus Major histocompatibility complex protein	97.91
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.82
KOG2384	223	consensus Major histocompatibility complex protein	97.77
KOG0511	516	consensus Ankyrin repeat protein [General function	97.57
KOG0511	516	consensus Ankyrin repeat protein [General function	97.53
KOG2505	591	consensus Ankyrin repeat protein [General function	96.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.16
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.41
KOG2505	591	consensus Ankyrin repeat protein [General function	94.71
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.41
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.45
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.19
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.72
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	81.49
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.22

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9e-36  Score=261.20  Aligned_cols=209  Identities=26%  Similarity=0.323  Sum_probs=181.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      +.++.+.+|+.....-|+.+++..+    +.+.-..|.+|+|||||||..||.++|.+|++. ....++.+|..||||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh----hhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhh
Confidence            5678899999999999999998765    233334445999999999999999999999985 46677778999999999


Q ss_pred             HHHHcCHHHHHHHHhc-CCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557          200 VAAKQGHLVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  278 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~  278 (561)
                      +|+..|+.++++-|.. .+.+++..+..|+||||+|+..|+.+|+++|++.|+.+ +.+|..|.||||-|+..|+.++++
T Consensus        78 ia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie  156 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIE  156 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHH
Confidence            9999998866555554 48899999999999999999999999999999999776 999999999999999999999999


Q ss_pred             HHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       279 ~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      +|+. .|+.+|.+|..|+||||.|...|+.+...+|+++||+....++.+ ++.+...
T Consensus       157 ~Li~-~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  157 YLIS-QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHh-cCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            9999 789999999999999999988899999999999999998888866 6654433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-35  Score=256.50  Aligned_cols=184  Identities=27%  Similarity=0.368  Sum_probs=170.4

Q ss_pred             CCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC
Q 008557          112 NKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (561)
Q Consensus       112 ~~~~~~~-~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~  190 (561)
                      .++.++. +|+||||+||..|+.++|.+|+....     ..++.+|..|+||||+||..|+.|+|+.|+.+ .+++++..
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n-----v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r-~~advna~  102 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN-----VKPDDKDDAGWTPLHIAASNGNDEVVKELLNR-SGADVNAT  102 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCC-----CCCCCccccCCchhhhhhhcCcHHHHHHHhcC-CCCCccee
Confidence            4455555 89999999999999999999997433     34788899999999999999999999999998 47899999


Q ss_pred             CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                      +..|.||||+|+..|..++..+|...++.+..+|+.|+||||.|+..|+.+++++|+..++.+ |.+|..|+||||.|..
T Consensus       103 tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~al~  181 (226)
T KOG4412|consen  103 TNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHALA  181 (226)
T ss_pred             cCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999776 9999999999999999


Q ss_pred             hCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557          271 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  304 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~  304 (561)
                      .|+.++..+|++ .|++++..|+.| ||+..|..
T Consensus       182 e~~~d~a~lLV~-~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  182 EGHPDVAVLLVR-AGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             ccCchHHHHHHH-hccceeeccccC-chHHHHHH
Confidence            999999999999 899999999998 99887763

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-34  Score=283.45  Aligned_cols=202  Identities=22%  Similarity=0.145  Sum_probs=181.9

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +..|.+|.||||+|+..|+.++++.|++.++.      ++..  +|.||||+|+..|+.++|++|+++  +++++.+|..
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~------~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~--Gadvn~~d~~   93 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGAL------KNLL--ENEFPLHQAATLEDTKIVKILLFS--GMDDSQFDDK   93 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC------CcCC--CCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCC
Confidence            46799999999999999999999999998643      3433  478999999999999999999998  6788889999


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCC-cHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQ-TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~-tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      |+||||+|+..|+.++.++|...+++.+..+..|+ ||||+|+..|+.++|++|++.+++..+.  ..|+||||+|+..|
T Consensus        94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g  171 (284)
T PHA02791         94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNG  171 (284)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--ccCccHHHHHHHcC
Confidence            99999999999999999999999988888888885 8999999999999999999987654221  35899999999999


Q ss_pred             CHHHHHHHhhcCCCCcccccCCCCCH-HHHHHHcCCHHHHHHHHHcCCcccccCCCC
Q 008557          273 RTQIVRCLLSIEGIDVNSLNKAGESP-LDVAEKLGNTELFSLLKEAGAAHSKDHGKP  328 (561)
Q Consensus       273 ~~~iv~~LL~~~gad~n~~d~~G~Tp-L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~  328 (561)
                      +.+++++||+ .|+++|.+|..|.|| ||+|+..|+.+++++|+++|++++..+..+
T Consensus       172 ~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        172 HVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             CHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence            9999999999 899999999999987 999999999999999999999998776644

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.4e-33  Score=295.83  Aligned_cols=266  Identities=17%  Similarity=0.143  Sum_probs=230.3

Q ss_pred             CCCCCcccccccc---cccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHH
Q 008557           52 ALGPMEKQQSFHG---VTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAA  128 (561)
Q Consensus        52 ~~g~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa  128 (561)
                      ..|+.+.++.+..   ..++..+..+.++++.|...|..+..+.+.             +.|++++..+..|.||||.|+
T Consensus        10 ~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll-------------~~Ga~~n~~~~~~~t~L~~A~   76 (434)
T PHA02874         10 YSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFI-------------KHGADINHINTKIPHPLLTAI   76 (434)
T ss_pred             hcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-------------HCCCCCCCCCCCCCCHHHHHH
Confidence            3566666655542   234455666779999999999887776543             568899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCccc-----------------hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC
Q 008557          129 RAGNLSRVMEILQSCDANE-----------------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA  191 (561)
Q Consensus       129 ~~g~~~~v~~Ll~~~~~~~-----------------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~  191 (561)
                      ..|+.+++++|++++....                 .+.+++.+|..|.||||+|+..|+.++|++|+++  +.+++.+|
T Consensus        77 ~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~--gad~n~~d  154 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY--GADVNIED  154 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC--CCCCCCcC
Confidence            9999999999999865321                 1345677899999999999999999999999998  67888899


Q ss_pred             CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHh
Q 008557          192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  271 (561)
Q Consensus       192 ~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~  271 (561)
                      .+|.||||+|+..|+..+.++|.+.+...+..|..|.||||+|+..|+.+++++|++.++++ +.++..|.||||.|+..
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999987 88899999999999998


Q ss_pred             CCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       272 g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~-~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      ++ +++.+|+.  |+++|.+|..|.||||+|+..+ +.+++++|+++|++++..+..+.+|.....
T Consensus       234 ~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        234 NR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAF  296 (434)
T ss_pred             Ch-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            75 56777764  8899999999999999999876 789999999999999999999999876654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-31  Score=280.26  Aligned_cols=252  Identities=23%  Similarity=0.275  Sum_probs=214.4

Q ss_pred             ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 008557           64 GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSC  143 (561)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~  143 (561)
                      +++++..++.+.|+++.++..+..+..+-       ++      ..++++...|.+|++|+|.|++.|..|+.+..+.+.
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~-------Li------~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~  210 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKE-------LI------NKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEH  210 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHH-------HH------hcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccc
Confidence            45666777777788888888876552221       11      567888888888888888888888888888888743


Q ss_pred             CccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC-------------CCcCCCCCCcHHHHHHHcCHHHHH
Q 008557          144 DANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET-------------ASIPARNGYDSFHVAAKQGHLVVK  210 (561)
Q Consensus       144 ~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~-------------~~~~~~~g~tpLh~Aa~~g~~~v~  210 (561)
                      +. +....+|.-|..|.||||.|+..|+.++++.+|+.+....             ++..|++|.||||+|++.|+....
T Consensus       211 g~-~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~sv  289 (929)
T KOG0510|consen  211 GY-ERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESV  289 (929)
T ss_pred             cc-hhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHH
Confidence            32 2245688899999999999999999999999999854322             344689999999999999999999


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhc-CCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcc
Q 008557          211 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN  289 (561)
Q Consensus       211 ~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n  289 (561)
                      .+|...|++++.+++++.||||.||.+|+.+.|+-||+ .+-.++|..|..|+||||+|+..||..++++||+ .|++.+
T Consensus       290 d~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~-~GA~~~  368 (929)
T KOG0510|consen  290 DNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN-KGALFL  368 (929)
T ss_pred             HHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHh-cChhhh
Confidence            99999999999999999999999999999999999999 7777789999999999999999999999999999 799877


Q ss_pred             ---cccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCC
Q 008557          290 ---SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPS  330 (561)
Q Consensus       290 ---~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~  330 (561)
                         ..|.+|+||||+|+..|+..+++.|+.+||++...++.+.+
T Consensus       369 ~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~S  412 (929)
T KOG0510|consen  369 NMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKS  412 (929)
T ss_pred             cccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccc
Confidence               56999999999999999999999999999999665555443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=292.01  Aligned_cols=227  Identities=21%  Similarity=0.206  Sum_probs=202.0

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK  155 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  155 (561)
                      +.++.|...|..+..+.+.             +.|++++..+..|.||||+|+..|+.++++.|++.+.      .++..
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll-------------~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------~~~~~   64 (413)
T PHA02875          4 VALCDAILFGELDIARRLL-------------DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA------IPDVK   64 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHH-------------HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC------Ccccc
Confidence            4556666666665544332             4688999999999999999999999999999999854      35667


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      +..+.||||.|+..|+.++|++|++.+ .......+.+|.||||+|+..|+.++.++|.+.+++++.+|..|.||||+|+
T Consensus        65 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~  143 (413)
T PHA02875         65 YPDIESELHDAVEEGDVKAVEELLDLG-KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV  143 (413)
T ss_pred             CCCcccHHHHHHHCCCHHHHHHHHHcC-CcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence            788999999999999999999999983 3333456778999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCC-CHHHHHHHcCCHHHHHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE-SPLDVAEKLGNTELFSLL  314 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~-TpL~~A~~~~~~~i~~~L  314 (561)
                      ..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+..++.+++++|
T Consensus       144 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L  221 (413)
T PHA02875        144 MMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLF  221 (413)
T ss_pred             HcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence            999999999999999987 9999999999999999999999999999 8999999998875 899999999999999999


Q ss_pred             HHcCCccccc
Q 008557          315 KEAGAAHSKD  324 (561)
Q Consensus       315 l~~ga~~~~~  324 (561)
                      +++|++++..
T Consensus       222 l~~gad~n~~  231 (413)
T PHA02875        222 IKRGADCNIM  231 (413)
T ss_pred             HHCCcCcchH
Confidence            9999998753

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=297.88  Aligned_cols=251  Identities=23%  Similarity=0.297  Sum_probs=178.5

Q ss_pred             CCCCCCCCccccccc--ccccccCCCCccccccc-----chhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCC
Q 008557           49 PPSALGPMEKQQSFH--GVTIDKQPSTRGVMEKQ-----KSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGD  121 (561)
Q Consensus        49 ~~~~~g~~e~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~  121 (561)
                      .+...|+.+.++.+.  ++.++..+..+.++++.     +...+..+..+.+.             +.|++++..|..|.
T Consensus        41 ~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll-------------~~ga~i~~~d~~g~  107 (480)
T PHA03100         41 LAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLL-------------EYGANVNAPDNNGI  107 (480)
T ss_pred             hhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHH-------------HCCCCCCCCCCCCC
Confidence            334556666666554  33444444545566666     55555544433222             45677777777777


Q ss_pred             hHHHHHH--HcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC--cHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          122 LQLHLAA--RAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       122 T~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      ||||+|+  ..|+.++++.|++.+.      .++..|..|.||||+|+..|  +.+++++|+++  +.+++..+..|.||
T Consensus       108 tpL~~A~~~~~~~~~iv~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~--g~din~~d~~g~tp  179 (480)
T PHA03100        108 TPLLYAISKKSNSYSIVEYLLDNGA------NVNIKNSDGENLLHLYLESNKIDLKILKLLIDK--GVDINAKNRYGYTP  179 (480)
T ss_pred             chhhHHHhcccChHHHHHHHHHcCC------CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC--CCCcccccCCCCCH
Confidence            7777777  7777777777777643      36667777777777777777  77777777777  55666677777777


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCC------CcHHHHHHhCCC--HHHHHHHhcCCCCcccccccCCchHHHHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKG------QTALHMAVKGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAI  269 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g------~tpLh~A~~~g~--~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa  269 (561)
                      ||+|+..|+..+.++|.+.+++++..+..|      .||||.|+..|+  .+++++|++.|.++ +.+|..|.||||+|+
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~TpL~~A~  258 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTPLHYAV  258 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            777777777777777777777777777777      777777777777  77777777777765 777777777777777


Q ss_pred             HhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       270 ~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      ..|+.+++++|++ .|+|+|.+|..|.||+|+|+..++.+++++|+++|++.+
T Consensus       259 ~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        259 YNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            7777777777777 677777777777777777777777777777777777654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-32  Score=292.64  Aligned_cols=261  Identities=20%  Similarity=0.213  Sum_probs=224.7

Q ss_pred             CCCCccccccc--ccccccCCCCcccccccchhhh---hHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHH
Q 008557           53 LGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRG---FIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLA  127 (561)
Q Consensus        53 ~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~A  127 (561)
                      .++.+.++.+.  ++.++.++..+.++++.+...+   ..+..+.+       +      +.|+++|.++..|.||||+|
T Consensus        24 ~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~L-------l------~~Gadin~~~~~g~TpLh~A   90 (471)
T PHA03095         24 NVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLL-------L------EAGADVNAPERCGFTPLHLY   90 (471)
T ss_pred             CCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHH-------H------HCCCCCCCCCCCCCCHHHHH
Confidence            45566666554  5567777777778888877777   43333322       2      67899999999999999999


Q ss_pred             HHcC-CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHH--HhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHc
Q 008557          128 ARAG-NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA--ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQ  204 (561)
Q Consensus       128 a~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~  204 (561)
                      +..| +.++++.|++++.      +++.+|..|.||||+|+  ..++.+++++|+++  +++++..|..|.||||+|+..
T Consensus        91 ~~~~~~~~iv~lLl~~ga------~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~--gad~~~~d~~g~tpL~~a~~~  162 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGA------DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK--GADVNALDLYGMTPLAVLLKS  162 (471)
T ss_pred             HHcCCcHHHHHHHHHcCC------CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHc
Confidence            9999 5999999999854      48899999999999999  56789999999998  678889999999999999987


Q ss_pred             C--HHHHHHHHhcCCCCccccCCCCCcHHHHHHhC--CCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCH--HHHH
Q 008557          205 G--HLVVKALVSKDPSTGFRTDKKGQTALHMAVKG--QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT--QIVR  278 (561)
Q Consensus       205 g--~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~--~iv~  278 (561)
                      +  +..+.++|.+.+.+....|..|+||||+|+..  ++.++++.|++.|.++ +.+|..|+||||+|+..|+.  .+++
T Consensus       163 ~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~  241 (471)
T PHA03095        163 RNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVL  241 (471)
T ss_pred             CCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHH
Confidence            6  56788888888888877899999999999864  7889999999999998 99999999999999999875  6788


Q ss_pred             HHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       279 ~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      .|+. .|+++|.+|..|+||||+|+..|+.+++++|+++||+++..+..+.+|.....
T Consensus       242 ~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~  298 (471)
T PHA03095        242 PLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV  298 (471)
T ss_pred             HHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            8898 89999999999999999999999999999999999999999999999876543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-32  Score=270.99  Aligned_cols=222  Identities=17%  Similarity=0.154  Sum_probs=189.0

Q ss_pred             cccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCcc
Q 008557           67 IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN  146 (561)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~  146 (561)
                      ...++..+.++++.+...|+.+..+.+.             +.+++++..  +|+||||+|+..|+.++|+.|+..+   
T Consensus        23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll-------------~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~G---   84 (284)
T PHA02791         23 AFKADVHGHSALYYAIADNNVRLVCTLL-------------NAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSG---   84 (284)
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHH-------------HCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCC---
Confidence            3456777889999999999876555432             345666655  4789999999999999999999875   


Q ss_pred             chhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC-cHHHHHHHcCHHHHHHHHhcCCCCccccC-
Q 008557          147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY-DSFHVAAKQGHLVVKALVSKDPSTGFRTD-  224 (561)
Q Consensus       147 ~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~-tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-  224 (561)
                         ++++.+|..|+||||+|+..|+.+++++|+++  +++.+..+..|+ ||||+|+..|+..+.++|...+...  .| 
T Consensus        85 ---advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~--gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~  157 (284)
T PHA02791         85 ---MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDL  157 (284)
T ss_pred             ---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--ccc
Confidence               44788999999999999999999999999998  567777888885 8999999999998888777654322  23 


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchH-HHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHH
Q 008557          225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  303 (561)
Q Consensus       225 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp-Lh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~  303 (561)
                      ..|.||||+|+.+|+.+++++|+++|+++ +.+|..|.|| ||+|+..|+.+++++|++ +|+++|.+|..| |+|    
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~l----  230 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VLL----  230 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-ccC----
Confidence            35899999999999999999999999987 8999999987 999999999999999999 899999999955 666    


Q ss_pred             HcCCHHHHHHHHHcCCccc
Q 008557          304 KLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       304 ~~~~~~i~~~Ll~~ga~~~  322 (561)
                        ++.|++++|+++-++..
T Consensus       231 --~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        231 --DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             --CCHHHHHHHHHhhhhhc
Confidence              88999999999988753

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=290.16  Aligned_cols=244  Identities=22%  Similarity=0.201  Sum_probs=222.7

Q ss_pred             CCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHH-----HHHcCCHHHHHHHHhcCC
Q 008557           70 QPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHL-----AARAGNLSRVMEILQSCD  144 (561)
Q Consensus        70 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~-----Aa~~g~~~~v~~Ll~~~~  144 (561)
                      .+..+.++++.+...+..+..+.+.             +.|++++..+..|.||||+     |+..|+.++++.|++.++
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll-------------~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga   97 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILL-------------DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA   97 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHH-------------HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC
Confidence            3445568888888888766655443             5688999999999999999     999999999999999854


Q ss_pred             ccchhHhhccCCCCCCcHHHHHH--HhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcC--HHHHHHHHhcCCCCc
Q 008557          145 ANEAKDLLSKKNQEGETPLYVAA--ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG--HLVVKALVSKDPSTG  220 (561)
Q Consensus       145 ~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~v~~lL~~~~~~~  220 (561)
                            .++..|..|.||||+|+  ..|+.+++++|+++  +.+.+..+..|.||||+|+..|  +..+.++|.+.+.++
T Consensus        98 ------~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di  169 (480)
T PHA03100         98 ------NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDN--GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI  169 (480)
T ss_pred             ------CCCCCCCCCCchhhHHHhcccChHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc
Confidence                  36889999999999999  99999999999998  6788889999999999999999  999999999999999


Q ss_pred             cccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCC------chHHHHHHHhCC--HHHHHHHhhcCCCCccccc
Q 008557          221 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG------NTALHIAIKKGR--TQIVRCLLSIEGIDVNSLN  292 (561)
Q Consensus       221 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G------~TpLh~Aa~~g~--~~iv~~LL~~~gad~n~~d  292 (561)
                      +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|      .||||.|+..|+  .+++++|++ .|+++|.+|
T Consensus       170 n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d  247 (480)
T PHA03100        170 NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKD  247 (480)
T ss_pred             ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCC
Confidence            999999999999999999999999999999988 8888888      999999999999  999999999 899999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          293 KAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       293 ~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      ..|.||||+|+..++.+++++|+++|++++..+..+.+|.....
T Consensus       248 ~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        248 VYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            99999999999999999999999999999999888988876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=8.2e-31  Score=279.61  Aligned_cols=258  Identities=20%  Similarity=0.197  Sum_probs=218.7

Q ss_pred             CCCCCccccccc--ccccccCCCCcccccccchhhhhHHHHHHHHHHH------------HHHhhhcCCCccCCCCCCCC
Q 008557           52 ALGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVM------------ERQLSFIGGGERKKNKDSPG  117 (561)
Q Consensus        52 ~~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~  117 (561)
                      ..|+.+.++.+.  ++.++..+..+.+++..+...|+.+..+.+....            .+.+...  .+.|++++.+|
T Consensus        44 ~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l--l~~g~d~n~~~  121 (434)
T PHA02874         44 RSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI--LDCGIDVNIKD  121 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH--HHCcCCCCCCC
Confidence            457777777665  4556666677778899999888887777664321            0111111  14678999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      ..|.||||+|+..|+.++|+.|++.+.      .++.+|..|.||||+|+..|+.+++++|+++  +.+.+..+..|.||
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~ga------d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~--g~~~n~~~~~g~tp  193 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFEYGA------DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK--GAYANVKDNNGESP  193 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCH
Confidence            999999999999999999999999854      4788999999999999999999999999998  67778899999999


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC-CHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG-RTQI  276 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g-~~~i  276 (561)
                      ||+|+..|+..+.++|.+.+++.+..+..|.||||.|+..++ +++.+|+ .++++ +.+|..|+||||+|+..+ +.++
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~i-n~~d~~G~TpLh~A~~~~~~~~i  270 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASI-NDQDIDGSTPLHHAINPPCDIDI  270 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCC-CCcCCCCCCHHHHHHhcCCcHHH
Confidence            999999999999999999999999999999999999999875 5667776 46665 899999999999999876 8899


Q ss_pred             HHHHhhcCCCCcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCcccc
Q 008557          277 VRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSK  323 (561)
Q Consensus       277 v~~LL~~~gad~n~~d~~G~TpL~~A~~~~-~~~i~~~Ll~~ga~~~~  323 (561)
                      +++|+. .|+|++.+|..|.||||+|++.+ ..++++.|+..++....
T Consensus       271 v~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~  317 (434)
T PHA02874        271 IDILLY-HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKE  317 (434)
T ss_pred             HHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhh
Confidence            999999 89999999999999999999987 67889999999886543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.98  E-value=4.8e-31  Score=284.68  Aligned_cols=245  Identities=16%  Similarity=0.160  Sum_probs=214.2

Q ss_pred             CCccccccc--ccccccCCCCcccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHH--H
Q 008557           55 PMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGF-IEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAA--R  129 (561)
Q Consensus        55 ~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa--~  129 (561)
                      +.+.++.+.  +++++.++..+.++++.+...+. .+..+.+.             +.|++++.+|..|.||||+|+  .
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl-------------~~ga~in~~~~~g~tpLh~a~~~~  128 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI-------------KAGADVNAKDKVGRTPLHVYLSGF  128 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHH-------------HcCCCCCCCCCCCCCHHHHHhhCC
Confidence            555555554  66788888888899999888884 44433322             578999999999999999999  5


Q ss_pred             cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC--cHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHc--C
Q 008557          130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQ--G  205 (561)
Q Consensus       130 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~--g  205 (561)
                      .++.++++.|++.+.      +++..|..|.||||+|+..+  +.+++++|+++  +.+....|..|.||||+|+..  +
T Consensus       129 ~~~~~iv~~Ll~~ga------d~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~--g~~~~~~d~~g~t~Lh~~~~~~~~  200 (471)
T PHA03095        129 NINPKVIRLLLRKGA------DVNALDLYGMTPLAVLLKSRNANVELLRLLIDA--GADVYAVDDRFRSLLHHHLQSFKP  200 (471)
T ss_pred             cCCHHHHHHHHHcCC------CCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHHCCC
Confidence            678999999999854      47889999999999999876  68999999998  566666799999999999875  6


Q ss_pred             HHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH--HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc
Q 008557          206 HLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE--DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  283 (561)
Q Consensus       206 ~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~--~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  283 (561)
                      +..+.++|...+.+++.+|..|+||||+|+..|+.  .+++.|++.+.++ |.+|..|+||||+|+..|+.+++++||+ 
T Consensus       201 ~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~-  278 (471)
T PHA03095        201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIA-  278 (471)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence            67888888899999999999999999999999875  6888999999887 9999999999999999999999999999 


Q ss_pred             CCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       284 ~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      .|+|+|.+|.+|.||||+|+..++.++++.|++.+++.+
T Consensus       279 ~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        279 LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            899999999999999999999999999999999998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=293.27  Aligned_cols=291  Identities=19%  Similarity=0.136  Sum_probs=234.9

Q ss_pred             HHHHhhhccCCCCCCCCC-----CCCCCccccccc--ccccccCCCCcccccccchhhhhHHHHHHHHHHH---------
Q 008557           34 VMEKQQSFNGESTDKPPS-----ALGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVM---------   97 (561)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~-----~~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------   97 (561)
                      .++.+.+.+.....+.+|     ..|+.+.++.+.  +++.+..+..+.++++.+...++.+..+.+....         
T Consensus       164 Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~  243 (682)
T PHA02876        164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS  243 (682)
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHH
Confidence            344444444443334443     567777777664  4455556666667777777777665554432110         


Q ss_pred             ---------HHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHhcCCccchhHhhccCCCCCCcHHHHHH
Q 008557           98 ---------ERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNL-SRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA  167 (561)
Q Consensus        98 ---------~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa  167 (561)
                               .....+  ..+.|.+++..|..|.||||+|+..|+. ++++.|++.+      ++++..|..|.||||+|+
T Consensus       244 L~~ai~~~~~~~~~~--Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g------adin~~d~~g~TpLh~Aa  315 (682)
T PHA02876        244 LLKAIRNEDLETSLL--LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG------ADVNAKNIKGETPLYLMA  315 (682)
T ss_pred             HHHHHHcCCHHHHHH--HHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC------CCCCCcCCCCCCHHHHHH
Confidence                     000011  1146788999999999999999999997 5888888874      447889999999999999


Q ss_pred             HhC-cHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHc-CHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHH
Q 008557          168 ESG-HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQ-GHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE  245 (561)
Q Consensus       168 ~~g-~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~-g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  245 (561)
                      ..| +.++++.|+..  +++++..|..|.||||+|+.. ++..+..+|...+.+++.+|..|+||||+|+..|+.+++++
T Consensus       316 ~~g~~~~~v~~Ll~~--gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~  393 (682)
T PHA02876        316 KNGYDTENIRTLIML--GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT  393 (682)
T ss_pred             HhCCCHHHHHHHHHc--CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999 59999999998  678889999999999999985 46788889999999999999999999999999999999999


Q ss_pred             HhcCCCCcccccccCCchHHHHHHHhCC-HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCcccc
Q 008557          246 LIRPDPSVLKLEDNKGNTALHIAIKKGR-TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSK  323 (561)
Q Consensus       246 Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~-~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~-~~~i~~~Ll~~ga~~~~  323 (561)
                      |++.|+++ +..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+||||+|+..+ +.+++++|+++|++++.
T Consensus       394 Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        394 LLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             HHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCC
Confidence            99999998 8899999999999998766 467899998 89999999999999999999876 68999999999999999


Q ss_pred             cCCCCCCHHHHHH
Q 008557          324 DHGKPPSATKQLK  336 (561)
Q Consensus       324 ~~~~~~~~~~~l~  336 (561)
                      .+..+.+|.....
T Consensus       472 ~d~~g~tpl~~a~  484 (682)
T PHA02876        472 INIQNQYPLLIAL  484 (682)
T ss_pred             CCCCCCCHHHHHH
Confidence            9999998876543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.3e-31  Score=274.05  Aligned_cols=186  Identities=29%  Similarity=0.394  Sum_probs=169.0

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCC-CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q 008557          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN-QEGETPLYVAAESGHALIVEEMLQHMNLETAS  188 (561)
Q Consensus       110 ~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~  188 (561)
                      +.+++.+|.+|.|+||+||.+++++++++||++++      ++|..+ .-+.|||||||++|+..+|++|+++  |+++.
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga------dvn~~gG~l~stPLHWAar~G~~~vv~lLlqh--GAdpt  139 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGA------DVNAIGGVLGSTPLHWAARNGHISVVDLLLQH--GADPT  139 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC------CccccCCCCCCCcchHHHHcCcHHHHHHHHHc--CCCCc
Confidence            88899999999999999999999999999999965      467776 6788999999999999999999998  88999


Q ss_pred             cCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc-cCCchHHHH
Q 008557          189 IPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHI  267 (561)
Q Consensus       189 ~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-~~G~TpLh~  267 (561)
                      ..|.+|.+|||+|+..|+...+.+|...+.+++.+|.+|+||||+|+.+|+...++.||+.++.+ +..| .+|+||||+
T Consensus       140 ~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHw  218 (600)
T KOG0509|consen  140 LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL-LLTDDNHGNTPLHW  218 (600)
T ss_pred             eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc-cccccccCCchHHH
Confidence            99999999999999999998888888888999999999999999999999998899999999988 5555 899999999


Q ss_pred             HHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       268 Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      |+..|+..++.+|++ .|++.+.+|.+|+||+++|...
T Consensus       219 a~~~gN~~~v~Ll~~-g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  219 AVVGGNLTAVKLLLE-GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHhcCCcceEehhhh-cCCcccccccCCCCHHHHHHHh
Confidence            999999999995555 8899999999999999999876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=281.21  Aligned_cols=239  Identities=23%  Similarity=0.226  Sum_probs=206.3

Q ss_pred             CcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhh
Q 008557           73 TRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLL  152 (561)
Q Consensus        73 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  152 (561)
                      .+-++++.|...|+.+..+.+.             +.|+++|.+|..|.||||+||..|+.++++.|++.+...      
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll-------------~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~------   96 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLL-------------TRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC------   96 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHH-------------HCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc------
Confidence            3447788888888776666443             568899999999999999999999999999999875421      


Q ss_pred             ccCCCCCCcHHHHHHHhCcHHHHHHHHhcC-------------------------------CCCCCCcCCCC-CCcHHHH
Q 008557          153 SKKNQEGETPLYVAAESGHALIVEEMLQHM-------------------------------NLETASIPARN-GYDSFHV  200 (561)
Q Consensus       153 ~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~-------------------------------~~~~~~~~~~~-g~tpLh~  200 (561)
                      +  ...+.+|||.|+..|+.+++++|+..+                               .+++++..+.+ |.||||+
T Consensus        97 ~--~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~  174 (477)
T PHA02878         97 S--VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHY  174 (477)
T ss_pred             c--cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHH
Confidence            1  156789999999988877666665431                               14566777788 9999999


Q ss_pred             HHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHh-CCHHHHHH
Q 008557          201 AAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK-GRTQIVRC  279 (561)
Q Consensus       201 Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~-g~~~iv~~  279 (561)
                      |+..|+.++.++|...+++++..|..|+||||.|+..|+.+++++|++.|+++ +.+|..|+||||+|+.. ++.+++++
T Consensus       175 A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~  253 (477)
T PHA02878        175 ATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKL  253 (477)
T ss_pred             HHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998 99999999999999976 78999999


Q ss_pred             HhhcCCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          280 LLSIEGIDVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       280 LL~~~gad~n~~d~-~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      |++ .|+++|.++. .|.||||+|  .++.+++++|+++|++++..+..+.+|.....
T Consensus       254 Ll~-~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        254 LLE-HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             HHH-cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999 8999999986 899999999  57899999999999999999999999876654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.1e-30  Score=286.18  Aligned_cols=262  Identities=16%  Similarity=0.072  Sum_probs=209.6

Q ss_pred             CCCCcccccccc---cccccC-CCCcccccccchhh--hhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHH
Q 008557           53 LGPMEKQQSFHG---VTIDKQ-PSTRGVMEKQKSFR--GFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHL  126 (561)
Q Consensus        53 ~g~~e~~~~~~~---~~~~~~-~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~  126 (561)
                      .++.+.++.+..   ++++.+ +..+.++++.+...  +..+..+       -++      +.|+++|.+|..|.||||+
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVk-------lLL------e~GADVN~kD~~G~TPLH~  218 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILE-------WLC------NNGVNVNLQNNHLITPLHT  218 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHH-------HHH------HcCCCCCCCCCCCCCHHHH
Confidence            466777776653   446665 56666777754322  2222222       222      6789999999999999999


Q ss_pred             HHHcCC--HHHHHHHHhcCCccchhHhhccCCCCCCcHHHHH-------------------------------------H
Q 008557          127 AARAGN--LSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA-------------------------------------A  167 (561)
Q Consensus       127 Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~A-------------------------------------a  167 (561)
                      |++.|+  .++|+.||+++      ++++.+|..|.||||+|                                     +
T Consensus       219 Aa~~g~~~~eIVklLLe~G------ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA  292 (764)
T PHA02716        219 YLITGNVCASVIKKIIELG------GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLA  292 (764)
T ss_pred             HHHcCCCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence            999995  59999999985      45889999999999975                                     4


Q ss_pred             HhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHH--cCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh---------
Q 008557          168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAK--QGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK---------  236 (561)
Q Consensus       168 ~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~--~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~---------  236 (561)
                      ..|+.+++++|+++  +++++.+|.+|+||||+|+.  .++.++.++|.+.+++++.+|..|+||||+|+.         
T Consensus       293 ~~g~leiVklLLe~--GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld  370 (764)
T PHA02716        293 RNIDISVVYSFLQP--GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILD  370 (764)
T ss_pred             HcCCHHHHHHHHhC--CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccc
Confidence            45788999999997  67888999999999999864  457788888889999999999999999999875         


Q ss_pred             -----CCCHHHHHHHhcCCCCcccccccCCchHHHHH----HHhCCHHHHHHHhhcCC----------------------
Q 008557          237 -----GQNEDIVLELIRPDPSVLKLEDNKGNTALHIA----IKKGRTQIVRCLLSIEG----------------------  285 (561)
Q Consensus       237 -----~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A----a~~g~~~iv~~LL~~~g----------------------  285 (561)
                           .++.+++++|++.|+++ +.+|..|+||||.+    ...++.+++++|++ .|                      
T Consensus       371 ~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis-~~~~~~~~~~~~q~ll~~~d~~~~  448 (764)
T PHA02716        371 PETDNDIRLDVIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLIS-DKVLNMVKHRILQDLLIRVDDTPC  448 (764)
T ss_pred             ccccccChHHHHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHh-CcchhhhhhhhhhhhhhccCcchh
Confidence                 37899999999999997 99999999999942    23467888888876 22                      


Q ss_pred             ---------------------------------------CCcccccCCCCCHHHHHHHcCCH-----HHHHHHHHcCCcc
Q 008557          286 ---------------------------------------IDVNSLNKAGESPLDVAEKLGNT-----ELFSLLKEAGAAH  321 (561)
Q Consensus       286 ---------------------------------------ad~n~~d~~G~TpL~~A~~~~~~-----~i~~~Ll~~ga~~  321 (561)
                                                             .++|..|..|+||||+|+..|+.     +++++|++.|+++
T Consensus       449 ~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI  528 (764)
T PHA02716        449 IIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI  528 (764)
T ss_pred             hHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC
Confidence                                                   13456688899999999999876     4569999999999


Q ss_pred             cccCCCCCCHHHHHHH
Q 008557          322 SKDHGKPPSATKQLKQ  337 (561)
Q Consensus       322 ~~~~~~~~~~~~~l~~  337 (561)
                      +..+..+.+|.....+
T Consensus       529 N~~d~~G~TPLh~A~~  544 (764)
T PHA02716        529 NIPTKNGVTPLMLTMR  544 (764)
T ss_pred             cccCCCCCCHHHHHHH
Confidence            9999999999876543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1e-30  Score=286.40  Aligned_cols=247  Identities=19%  Similarity=0.097  Sum_probs=201.7

Q ss_pred             CCccccccc--ccccccCCCCcccccccchhhhhH--HHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHH---
Q 008557           55 PMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFI--EKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLA---  127 (561)
Q Consensus        55 ~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~A---  127 (561)
                      +.+.++.+.  ++.++.++..+.++++.+...|..  +..+       .++      +.|+++|.+|..|+||||.|   
T Consensus       191 ~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk-------lLL------e~GADVN~kD~~G~TPLh~Ai~~  257 (764)
T PHA02716        191 DIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIK-------KII------ELGGDMDMKCVNGMSPIMTYIIN  257 (764)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH-------HHH------HcCCCCCCCCCCCCCHHHHHHHh
Confidence            445555443  667888888899999999888742  2222       222      67899999999999999975   


Q ss_pred             ----------------------------------HHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHH--hCc
Q 008557          128 ----------------------------------ARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE--SGH  171 (561)
Q Consensus       128 ----------------------------------a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~--~g~  171 (561)
                                                        ++.|+.++++.|++.+      +.++.+|..|+||||+|+.  .++
T Consensus       258 a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G------AdIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        258 IDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG------VKLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             hhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC------CceeccCCCCCCHHHHHHHHhCCC
Confidence                                              3457777888888764      4588899999999999875  468


Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHH--------------cCHHHHHHHHhcCCCCccccCCCCCcHHHH----
Q 008557          172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAK--------------QGHLVVKALVSKDPSTGFRTDKKGQTALHM----  233 (561)
Q Consensus       172 ~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~--------------~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~----  233 (561)
                      .+++++|+++  +++++.+|..|+||||+|+.              .++..+.++|.+.|++++.+|..|+||||.    
T Consensus       332 ~eIVklLLe~--GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~  409 (764)
T PHA02716        332 TDIIKLLHEY--GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICT  409 (764)
T ss_pred             chHHHHHHHc--CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHH
Confidence            9999999998  67889999999999999875              367889999999999999999999999994    


Q ss_pred             HHhCCCHHHHHHHhcCCCC------------------------------------------------------------c
Q 008557          234 AVKGQNEDIVLELIRPDPS------------------------------------------------------------V  253 (561)
Q Consensus       234 A~~~g~~~iv~~Ll~~~~~------------------------------------------------------------~  253 (561)
                      |...++.+++++|++.+..                                                            .
T Consensus       410 a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n  489 (764)
T PHA02716        410 AQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN  489 (764)
T ss_pred             HHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc
Confidence            2345778999998875321                                                            0


Q ss_pred             ccccccCCchHHHHHHHhCCH-----HHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCH-----HHHHHHHHcCCcccc
Q 008557          254 LKLEDNKGNTALHIAIKKGRT-----QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT-----ELFSLLKEAGAAHSK  323 (561)
Q Consensus       254 ~n~~d~~G~TpLh~Aa~~g~~-----~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~-----~i~~~Ll~~ga~~~~  323 (561)
                      ++..|..|+||||+|+..|+.     +++++|++ .|+|+|.+|.+|+||||+|+++|+.     +++++|+++|++++.
T Consensus       490 vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~  568 (764)
T PHA02716        490 NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI  568 (764)
T ss_pred             ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence            144578899999999999876     45599999 8999999999999999999999976     999999999998764

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=275.97  Aligned_cols=203  Identities=22%  Similarity=0.245  Sum_probs=181.5

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCc--HHHHHHHHhcCCCC
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH--ALIVEEMLQHMNLE  185 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~~iv~~LL~~~~~~  185 (561)
                      +.|+++|.+|..|.||||+||..|+.++|+.||+++      ++++.+|..|.||||+|+..++  .+++++|+++  ++
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G------Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Ga  131 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG------ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY--GA  131 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc------CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CC
Confidence            578999999999999999999999999999999985      4488999999999999998764  8999999998  55


Q ss_pred             CCC-cCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC--CHHHHHHHhcCCCCcccccccCCc
Q 008557          186 TAS-IPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ--NEDIVLELIRPDPSVLKLEDNKGN  262 (561)
Q Consensus       186 ~~~-~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~n~~d~~G~  262 (561)
                      +++ ..|.+|.|||| |+..|+..+.++|...+++++..|..|+||||+|+..+  +.+++++|++.|+++ +.+|.+|+
T Consensus       132 din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~  209 (446)
T PHA02946        132 KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGN  209 (446)
T ss_pred             CcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCC
Confidence            666 36889999998 66678888888888899999999999999999998754  468999999999998 99999999


Q ss_pred             hHHHHHHHhC--CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHHcCCccc
Q 008557          263 TALHIAIKKG--RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-TELFSLLKEAGAAHS  322 (561)
Q Consensus       263 TpLh~Aa~~g--~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~-~~i~~~Ll~~ga~~~  322 (561)
                      ||||+|+..|  +.+++++|+.  |+++|.+|..|.||||+|+..++ .+++++|+++|+...
T Consensus       210 TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        210 TPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             CHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence            9999999986  7899999885  79999999999999999999988 589999999997653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5e-30  Score=265.29  Aligned_cols=209  Identities=27%  Similarity=0.307  Sum_probs=192.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCCcHHH
Q 008557          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFH  199 (561)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~tpLh  199 (561)
                      .+-.+.|++.|+++.|+.|++...     ..++..|.+|.|+|||||.+++.+++++|+++  +++++..+ .-+.||||
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g-----~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPLH  117 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEG-----ESVNNPDREGVTLLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPLH  117 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcC-----cCCCCCCcCCccceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcch
Confidence            456889999999999999998732     44889999999999999999999999999999  55666666 66889999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                      +|+++|+..++.+|.+.|+++..+|..|.||||.|+..|+.-+|-+||.++.++ +.+|.+|+||||+|+.+|+...++.
T Consensus       118 WAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  118 WAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999776 9999999999999999999988999


Q ss_pred             HhhcCCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHHHH
Q 008557          280 LLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQT  338 (561)
Q Consensus       280 LL~~~gad~n~~d-~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~~~  338 (561)
                      ||+ .|++++..| .+|+||||+|+..|+..++.+|++.|++.++.+.++.+|.+..++.
T Consensus       197 LL~-f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  197 LLK-FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHH-hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            998 799999998 8999999999999999999988899999999999999998776554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.6e-30  Score=273.13  Aligned_cols=202  Identities=18%  Similarity=0.161  Sum_probs=183.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      ++++||.|+..|+.++++.|++.+.      +++..+..|.||||+|+..|+.++|++|+++  ++.++..+.++.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~------~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI------NPNFEIYDGISPIKLAMKFRDSEAIKLLMKH--GAIPDVKYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccCCCcccHHH
Confidence            5789999999999999999999854      4778888999999999999999999999998  5667778889999999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCc-cccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTG-FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  278 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~-~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~  278 (561)
                      .|+..|+..+.++|...+... +..+..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999998888777766543 455778999999999999999999999999998 999999999999999999999999


Q ss_pred             HHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCH
Q 008557          279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA  331 (561)
Q Consensus       279 ~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~  331 (561)
                      +|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.....+.++
T Consensus       153 ~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t  204 (413)
T PHA02875        153 LLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVA  204 (413)
T ss_pred             HHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCch
Confidence            9999 899999999999999999999999999999999999998777666543

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=5.2e-30  Score=272.35  Aligned_cols=241  Identities=15%  Similarity=0.170  Sum_probs=196.2

Q ss_pred             CCcccccc--cccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCC
Q 008557           55 PMEKQQSF--HGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGN  132 (561)
Q Consensus        55 ~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~  132 (561)
                      +.+.++.+  .++.++.++..+.++++.+...|+.+..+.+.             +.|+++|.+|..|.||||+|+..++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL-------------~~GAdin~~d~~g~TpLh~A~~~~~  117 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLL-------------THGADPNACDKQHKTPLYYLSGTDD  117 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-------------HCcCCCCCCCCCCCCHHHHHHHcCC
Confidence            33445544  36678888888899999999999876655432             5789999999999999999998764


Q ss_pred             --HHHHHHHHhcCCccchhHhhc-cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCH--H
Q 008557          133 --LSRVMEILQSCDANEAKDLLS-KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH--L  207 (561)
Q Consensus       133 --~~~v~~Ll~~~~~~~~~~~~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~--~  207 (561)
                        .++++.|+++++      +++ ..|..|.|||| ||..|+.+++++|++.  +.+.+..|..|+||||+|+..++  .
T Consensus       118 ~~~e~v~lLl~~Ga------din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~--gad~~~~d~~G~t~Lh~A~~~~~~~~  188 (446)
T PHA02946        118 EVIERINLLVQYGA------KINNSVDEEGCGPLL-ACTDPSERVFKKIMSI--GFEARIVDKFGKNHIHRHLMSDNPKA  188 (446)
T ss_pred             chHHHHHHHHHcCC------CcccccCCCCCcHHH-HHHCCChHHHHHHHhc--cccccccCCCCCCHHHHHHHhcCCCH
Confidence              899999999864      355 46889999997 6677999999999988  67888899999999999887654  5


Q ss_pred             HHHHHHhcCCCCccccCCCCCcHHHHHHhCC--CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC-HHHHHHHhhcC
Q 008557          208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQ--NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR-TQIVRCLLSIE  284 (561)
Q Consensus       208 ~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~-~~iv~~LL~~~  284 (561)
                      .+.++|...+++++.+|.+|+||||+|+..|  +.+++++|+. ++++ |.+|..|+||||+|+..++ .+++++|+. .
T Consensus       189 ~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~-~  265 (446)
T PHA02946        189 STISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLS-T  265 (446)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHh-C
Confidence            7778888888888889999999999999875  7889998885 6665 8999999999999999988 488888888 5


Q ss_pred             CCCc--------------------cccc-CCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          285 GIDV--------------------NSLN-KAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       285 gad~--------------------n~~d-~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      |++.                    +..+ ..|.||||+|+..|+.+++++|+++|++
T Consensus       266 g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~  322 (446)
T PHA02946        266 SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDII  322 (446)
T ss_pred             CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCc
Confidence            6542                    1222 3577999999999999999999998863

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.8e-30  Score=286.15  Aligned_cols=267  Identities=17%  Similarity=0.118  Sum_probs=214.1

Q ss_pred             CCCCccccccc--ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHc
Q 008557           53 LGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARA  130 (561)
Q Consensus        53 ~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~  130 (561)
                      .|+.+.++.+.  +++++.++..+.++++.|...|+.+..+.+.             +.|++++..+..|.||||+|+..
T Consensus       155 ~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL-------------~~Gad~n~~~~~g~t~L~~A~~~  221 (682)
T PHA02876        155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL-------------SYGADVNIIALDDLSVLECAVDS  221 (682)
T ss_pred             CCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-------------HCCCCcCccCCCCCCHHHHHHHc
Confidence            45555555444  5567777777888888888888876666443             56788888888889999999999


Q ss_pred             CCHHHHHHHHhcCCccc-----------------------hhHhhccCCCCCCcHHHHHHHhCcH-HHHHHHHhcCCCCC
Q 008557          131 GNLSRVMEILQSCDANE-----------------------AKDLLSKKNQEGETPLYVAAESGHA-LIVEEMLQHMNLET  186 (561)
Q Consensus       131 g~~~~v~~Ll~~~~~~~-----------------------~~~~~~~~~~~g~TpLh~Aa~~g~~-~iv~~LL~~~~~~~  186 (561)
                      |+.++++.|++.+....                       .+..++..|..|.||||+|+..|+. +++++|++.  +.+
T Consensus       222 ~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~--gad  299 (682)
T PHA02876        222 KNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER--GAD  299 (682)
T ss_pred             CCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC--CCC
Confidence            99888888887644210                       1223566778889999999998886 588888887  667


Q ss_pred             CCcCCCCCCcHHHHHHHcC-HHHHHHHHhcCCCCccccCCCCCcHHHHHHhC-CCHHHHHHHhcCCCCcccccccCCchH
Q 008557          187 ASIPARNGYDSFHVAAKQG-HLVVKALVSKDPSTGFRTDKKGQTALHMAVKG-QNEDIVLELIRPDPSVLKLEDNKGNTA  264 (561)
Q Consensus       187 ~~~~~~~g~tpLh~Aa~~g-~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~n~~d~~G~Tp  264 (561)
                      ++..|.+|.||||+|+..| +..+.++|...+++++..|..|+||||+|+.. ++.++++.|++.|+++ +.+|..|+||
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~Tp  378 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTP  378 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCH
Confidence            7888888999999999888 47788888888888888888999999998874 5788888888888887 8889999999


Q ss_pred             HHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          265 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-TELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       265 Lh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~-~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      ||+|+..|+.+++++|++ .|++++..+..|.||||+|+..++ ..++++|+++|++++..+..+.+|.....
T Consensus       379 Lh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa  450 (682)
T PHA02876        379 IHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYAC  450 (682)
T ss_pred             HHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHH
Confidence            999999999999999998 789999999999999999887655 46788899999998888888888876654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.4e-30  Score=268.29  Aligned_cols=239  Identities=21%  Similarity=0.249  Sum_probs=205.1

Q ss_pred             ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 008557           64 GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSC  143 (561)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~  143 (561)
                      ++...-.+..+.++++.+...|..+..+.+.             +.++|+|..|+.|.||||+||..++.|..+.|++.+
T Consensus       111 gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll-------------~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~  177 (929)
T KOG0510|consen  111 GADTPLRNLNKNAPLHLAADSGNYSCLKLLL-------------DYGADVNLEDENGFTPLHLAARKNKVEAKKELINKG  177 (929)
T ss_pred             CCCCChhhhhccCchhhccccchHHHHHHHH-------------HhcCCccccccCCCchhhHHHhcChHHHHHHHHhcC
Confidence            4444455555667888888877665555433             456999999999999999999999999888899884


Q ss_pred             CccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcC---CCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCc
Q 008557          144 DANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM---NLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTG  220 (561)
Q Consensus       144 ~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~---~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~  220 (561)
                            +++.+.|.+|++|+|.|++.|..|+.+..+.+.   ....++..+.+|.||||.|+..|+.+..+.+++.+.-.
T Consensus       178 ------a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~  251 (929)
T KOG0510|consen  178 ------ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKI  251 (929)
T ss_pred             ------CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCcccc
Confidence                  447889999999999999999999999999931   24567888999999999999999998888777655422


Q ss_pred             ---------------cccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhh-cC
Q 008557          221 ---------------FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS-IE  284 (561)
Q Consensus       221 ---------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~-~~  284 (561)
                                     +..|.+|.||||+|++.|+.+.++.|+..|+++ +.++.++.||||.||.+|+.+.|+.||+ ..
T Consensus       252 a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~  330 (929)
T KOG0510|consen  252 ADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESD  330 (929)
T ss_pred             chhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcC
Confidence                           245889999999999999999999999999998 9999999999999999999999999998 33


Q ss_pred             CCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       285 gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      -...|..|-.|.||||+|++.||.+++++|++.||...
T Consensus       331 ~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  331 TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             ccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            45588999999999999999999999999999999876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4e-29  Score=269.73  Aligned_cols=209  Identities=22%  Similarity=0.291  Sum_probs=184.1

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCC
Q 008557          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG  194 (561)
Q Consensus       115 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g  194 (561)
                      ..+..+.||||+||+.|+.++|+.|++.+      ++++.+|..|.||||+||..|+.+++++|++.+....  .  ..+
T Consensus        32 ~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g------advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~--~--~~~  101 (477)
T PHA02878         32 SASLIPFIPLHQAVEARNLDVVKSLLTRG------HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS--V--FYT  101 (477)
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc--c--ccc
Confidence            34567899999999999999999999985      4488999999999999999999999999999743222  2  567


Q ss_pred             CcHHHHHHHcCHHH---------------------------------HHHHHhcCCCCccccCCC-CCcHHHHHHhCCCH
Q 008557          195 YDSFHVAAKQGHLV---------------------------------VKALVSKDPSTGFRTDKK-GQTALHMAVKGQNE  240 (561)
Q Consensus       195 ~tpLh~Aa~~g~~~---------------------------------v~~lL~~~~~~~~~~d~~-g~tpLh~A~~~g~~  240 (561)
                      .+|+|.|+..|+.+                                 +.++|...+++++..|.. |+||||+|+..|+.
T Consensus       102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~  181 (477)
T PHA02878        102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQ  181 (477)
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCH
Confidence            89999999887652                                 556666777888888888 99999999999999


Q ss_pred             HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc-CCHHHHHHHHHcCC
Q 008557          241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL-GNTELFSLLKEAGA  319 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~-~~~~i~~~Ll~~ga  319 (561)
                      +++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+.. ++.+++++|+++|+
T Consensus       182 ~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga  259 (477)
T PHA02878        182 RLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV  259 (477)
T ss_pred             HHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence            9999999999987 9999999999999999999999999999 8999999999999999999975 78999999999999


Q ss_pred             cccccCC-CCCCHHHHH
Q 008557          320 AHSKDHG-KPPSATKQL  335 (561)
Q Consensus       320 ~~~~~~~-~~~~~~~~l  335 (561)
                      +++.... .+.+|....
T Consensus       260 dvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        260 DVNAKSYILGLTALHSS  276 (477)
T ss_pred             CCCccCCCCCCCHHHHH
Confidence            9987665 567776654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.2e-29  Score=268.37  Aligned_cols=250  Identities=15%  Similarity=0.145  Sum_probs=181.4

Q ss_pred             CCCccccccc--ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcC
Q 008557           54 GPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAG  131 (561)
Q Consensus        54 g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g  131 (561)
                      ++.+.++.+.  |++++..+..+.++++.+....  ..........+-++      +.|+++|.+|..|+||||+|+..|
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~--~~~~~~~~iv~~Ll------~~GadiN~~d~~G~TpLh~a~~~~  120 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGLDNEYSTPLCTILSNI--KDYKHMLDIVKILI------ENGADINKKNSDGETPLYCLLSNG  120 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhH--HhHHhHHHHHHHHH------HCCCCCCCCCCCcCcHHHHHHHcC
Confidence            4555566554  5566667777777776543210  00000011111122      567888888888888888888875


Q ss_pred             ---CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCc---HHHHHHHHhcCCCCCCCcCC-CCCCcHHHHHHHc
Q 008557          132 ---NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH---ALIVEEMLQHMNLETASIPA-RNGYDSFHVAAKQ  204 (561)
Q Consensus       132 ---~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~~~~~~~~~~~-~~g~tpLh~Aa~~  204 (561)
                         +.++++.|++++      ++++..|..|.||||+|+..|+   .+++++|+++  +.+++..+ ..|.||||.++..
T Consensus       121 ~~~~~~iv~~Ll~~G------advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~--gadin~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        121 YINNLEILLFMIENG------ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK--GVDINTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             CcChHHHHHHHHHcC------CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh--CCCcccccCcCCCcHHHHHHHh
Confidence               678888888874      3477888888888888888887   8888888887  55666553 4678888887764


Q ss_pred             C----HHHHHHHHhcCCCCccccCCCCCcHHH-------HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC
Q 008557          205 G----HLVVKALVSKDPSTGFRTDKKGQTALH-------MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  273 (561)
Q Consensus       205 g----~~~v~~lL~~~~~~~~~~d~~g~tpLh-------~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~  273 (561)
                      +    +..+.++|.+.|++++..|..|+++++       .+...++.+++.+|+. +.++ |.+|..|+||||+|+..|+
T Consensus       193 ~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        193 NIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDI-NQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             ccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCC-CCcCcCCccHHHHHHHcCc
Confidence            3    567777777778877777777888766       2445566777777665 4555 8888889999999999999


Q ss_pred             HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       274 ~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      .+++++|++ .|+|+|.+|..|+||||+|+..++.++++.|+++|++++
T Consensus       271 ~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        271 RKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            999999998 789999999999999999999999999999888888764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=266.11  Aligned_cols=201  Identities=15%  Similarity=0.135  Sum_probs=128.1

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHhcCCccchhHhh-ccCCCCCCcHHHHHHHh--CcHHHHHHHHhc
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARA---GNLSRVMEILQSCDANEAKDLL-SKKNQEGETPLYVAAES--GHALIVEEMLQH  181 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~-~~~~~~g~TpLh~Aa~~--g~~~iv~~LL~~  181 (561)
                      +.|+++|.+|..|.||||.|+..   |+.++|+.|++++      +++ +.+|..|.||||+|+..  ++.++|++|+++
T Consensus        96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G------adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG------INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC------CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            45666666666677777766665   4566667776663      235 56666667777766543  466667777666


Q ss_pred             CCCCCCCc-CCCCCCcHHHHHHHcC----HHHHHHHHhcCCCCccccCCCCCcHHHHHHhC------CCHHHHHHHhcCC
Q 008557          182 MNLETASI-PARNGYDSFHVAAKQG----HLVVKALVSKDPSTGFRTDKKGQTALHMAVKG------QNEDIVLELIRPD  250 (561)
Q Consensus       182 ~~~~~~~~-~~~~g~tpLh~Aa~~g----~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~------g~~~iv~~Ll~~~  250 (561)
                        +++++. .+..|.||||+|+..+    +.++.++|.+.|++++..|..|.||||.++..      +..+++++|++ +
T Consensus       170 --Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~  246 (494)
T PHA02989        170 --GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-Y  246 (494)
T ss_pred             --CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-C
Confidence              344444 4556667776665543    55666666666666666666666666665543      23455555544 3


Q ss_pred             CCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 008557          251 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  319 (561)
Q Consensus       251 ~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga  319 (561)
                      +++ |.+|..|+||||+|+..|+.+++++|++ .|+|+|.+|..|.||||+|+..++.++++.|++.+.
T Consensus       247 adv-n~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        247 IKI-NKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCC-CCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            444 6667777777777777777777777776 677777777777777777777777777777766553

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=266.37  Aligned_cols=258  Identities=14%  Similarity=0.136  Sum_probs=211.0

Q ss_pred             CCCCccccccc--ccccccCCCCcccccccch--hhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHH
Q 008557           53 LGPMEKQQSFH--GVTIDKQPSTRGVMEKQKS--FRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAA  128 (561)
Q Consensus        53 ~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa  128 (561)
                      ..+.+.++.+.  |++++.. ..+.++++...  ..++.+..+.+.             +.|+++|.++ .+.||||.|+
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll-------------~~GAdvn~~~-~~~tpL~~a~   77 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLI-------------DNGADVNYKG-YIETPLCAVL   77 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHH-------------HcCCCccCCC-CCCCcHHHHH
Confidence            34556666554  5566655 34556554332  223444444332             6789999887 6799999997


Q ss_pred             H------cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCC-CcCCCCCCcHH
Q 008557          129 R------AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES---GHALIVEEMLQHMNLETA-SIPARNGYDSF  198 (561)
Q Consensus       129 ~------~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~~~~~~-~~~~~~g~tpL  198 (561)
                      .      .|+.++|+.|+++|      ++++.+|..|.||||.|+..   |+.++|++|+++  |+++ +..|..|+|||
T Consensus        78 ~~~~~~~~~~~~iv~~Ll~~G------adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~--Gadin~~~d~~g~tpL  149 (494)
T PHA02989         78 RNREITSNKIKKIVKLLLKFG------ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK--GINVNDVKNSRGYNLL  149 (494)
T ss_pred             hccCcchhhHHHHHHHHHHCC------CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC--CCCcccccCCCCCCHH
Confidence            6      58899999999985      45899999999999998865   689999999998  6787 78899999999


Q ss_pred             HHHHHc--CHHHHHHHHhcCCCCccc-cCCCCCcHHHHHHhC----CCHHHHHHHhcCCCCcccccccCCchHHHHHHHh
Q 008557          199 HVAAKQ--GHLVVKALVSKDPSTGFR-TDKKGQTALHMAVKG----QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  271 (561)
Q Consensus       199 h~Aa~~--g~~~v~~lL~~~~~~~~~-~d~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~  271 (561)
                      |+|+..  ++.++.++|.+.|++++. .+..|.||||+|+..    ++.+++++|++.|+++ +..|..|.||||.++..
T Consensus       150 h~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        150 HMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHh
Confidence            999765  577888888888888877 678999999999875    4899999999999997 88899999999987764


Q ss_pred             C------CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          272 G------RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       272 g------~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      +      ..+++++|+.  |+++|.+|..|+||||+|+..++.+++++|+++|++++..+..+.+|.....
T Consensus       229 ~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        229 NKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             chhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            3      5678888775  6999999999999999999999999999999999999999999999876654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3e-28  Score=233.22  Aligned_cols=178  Identities=19%  Similarity=0.182  Sum_probs=158.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC--cHHHHHHHHhcCCCCCCCcCC-C
Q 008557          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQHMNLETASIPA-R  192 (561)
Q Consensus       116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~iv~~LL~~~~~~~~~~~~-~  192 (561)
                      ....+.||||.|+..|+.+.|+.|++.         ++..|..|.||||+|+..+  +.+++++|+++  +++++..+ .
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~---------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~   85 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF---------VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRD   85 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh---------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCC
Confidence            346779999999999999999999964         5677899999999999854  89999999998  67777776 5


Q ss_pred             CCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCCCCCcHHHHHHh--CCCHHHHHHHhcCCCCcccccccCCchHHHH
Q 008557          193 NGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDKKGQTALHMAVK--GQNEDIVLELIRPDPSVLKLEDNKGNTALHI  267 (561)
Q Consensus       193 ~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~  267 (561)
                      .|.||||+|+..   ++.++.++|.+.+++++.+|..|+||||+|+.  .++.+++++|++.|+++ +.+|.+|+||||.
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~  164 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYS  164 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHH
Confidence            899999998764   46888999999999999999999999999986  46899999999999987 8999999999996


Q ss_pred             -HHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          268 -AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       268 -Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                       |+..++.+++++|++ .|++++.+|..|.||||+|...+
T Consensus       165 ~a~~~~~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        165 YILFHSDKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence             566889999999999 89999999999999999998653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=6e-28  Score=261.20  Aligned_cols=218  Identities=18%  Similarity=0.216  Sum_probs=194.1

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHc-----CCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC---cHHHHHHHH
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARA-----GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG---HALIVEEML  179 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~~iv~~LL  179 (561)
                      +.|+++|..|..|.||||.|+.+     ++.++++.|++++      ++++.+|..|.||||+|+..|   +.+++++|+
T Consensus        59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G------adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll  132 (489)
T PHA02798         59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG------ADINKKNSDGETPLYCLLSNGYINNLEILLFMI  132 (489)
T ss_pred             HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC------CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH
Confidence            67999999999999999999875     7799999999985      458999999999999999986   789999999


Q ss_pred             hcCCCCCCCcCCCCCCcHHHHHHHcCH---HHHHHHHhcCCCCccccC-CCCCcHHHHHHhC----CCHHHHHHHhcCCC
Q 008557          180 QHMNLETASIPARNGYDSFHVAAKQGH---LVVKALVSKDPSTGFRTD-KKGQTALHMAVKG----QNEDIVLELIRPDP  251 (561)
Q Consensus       180 ~~~~~~~~~~~~~~g~tpLh~Aa~~g~---~~v~~lL~~~~~~~~~~d-~~g~tpLh~A~~~----g~~~iv~~Ll~~~~  251 (561)
                      ++  +++++..|.+|.||||+|+..|+   ..+.++|.+.|++++..+ ..|.||||.++..    ++.+++++|+++|+
T Consensus       133 ~~--Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        133 EN--GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             Hc--CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            98  77889999999999999999987   788888888888887764 5789999998764    58999999999999


Q ss_pred             CcccccccCCchHHH-------HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc
Q 008557          252 SVLKLEDNKGNTALH-------IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD  324 (561)
Q Consensus       252 ~~~n~~d~~G~TpLh-------~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~  324 (561)
                      ++ +..|..|+|+++       .+...++.+++.+|+.  ++|+|.+|..|+||||+|+..++.+++++|+++||+++..
T Consensus       211 ~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        211 II-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             Cc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            87 888889999887       2445677889988876  6999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHH
Q 008557          325 HGKPPSATKQLK  336 (561)
Q Consensus       325 ~~~~~~~~~~l~  336 (561)
                      +..+.+|.....
T Consensus       288 d~~G~TpL~~A~  299 (489)
T PHA02798        288 TELGNTCLFTAF  299 (489)
T ss_pred             CCCCCcHHHHHH
Confidence            999999876553

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=9.2e-28  Score=238.50  Aligned_cols=82  Identities=27%  Similarity=0.401  Sum_probs=72.0

Q ss_pred             ccccCCchHHHHHHHhC-------------CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          256 LEDNKGNTALHIAIKKG-------------RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       256 ~~d~~G~TpLh~Aa~~g-------------~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      .+..+|.||||+|+...             +..+++.||+ .|+|+|.+|.+|+||||+|+.+....|+..|++.|+..+
T Consensus       477 pr~~~~ft~LH~av~~~tt~~gry~v~~fPs~~V~k~Lle-cgadvna~D~~~ntplHIa~~~~~~si~~aLie~Gah~d  555 (615)
T KOG0508|consen  477 PRGKNGFTLLHLAVDKNTTNVGRYPVCRFPSAHVTKVLLE-CGADVNARDFDNNTPLHIAAQNNCPSIVNALIEAGAHLD  555 (615)
T ss_pred             ccccCCCchhhhhhccCCCCCCcccccCCcHHHHHHHHHH-cCCCCCcccCCCCchhHHHHHhccHHHHHHHHHcccchh
Confidence            35678999999999754             3468899999 899999999999999999999999999999999999999


Q ss_pred             ccCCCCCCHHHHHHHH
Q 008557          323 KDHGKPPSATKQLKQT  338 (561)
Q Consensus       323 ~~~~~~~~~~~~l~~~  338 (561)
                      ..+..+.++.+.+.+.
T Consensus       556 atN~~~~t~~~ll~~~  571 (615)
T KOG0508|consen  556 ATNAHKKTALDLLDEK  571 (615)
T ss_pred             hhhhccccHHHHhchh
Confidence            9888888887666543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=254.57  Aligned_cols=201  Identities=21%  Similarity=0.196  Sum_probs=169.9

Q ss_pred             cCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHH----HHHHHHhc
Q 008557          109 RKKNKDSPGKRGDLQLHLAARA---GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL----IVEEMLQH  181 (561)
Q Consensus       109 ~~~~~~~~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~----iv~~LL~~  181 (561)
                      .+..++..|.+|+||||+|+..   |+.++|+.||+.+.      +++..|..|.||||+|+..|+.+    +++.|++.
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga------~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~   94 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGT------NPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEA   94 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCC------CccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhc
Confidence            5666788899999999998666   88999999999854      47889999999999999999954    56788876


Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHH--HhCCCHHHHHHHhcCCCCccccccc
Q 008557          182 MNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMA--VKGQNEDIVLELIRPDPSVLKLEDN  259 (561)
Q Consensus       182 ~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~n~~d~  259 (561)
                      ++.  .+..+  ..+++|.|+.+|+.+++++|...|++++..|.+|+||||.|  +..|+.+++++|+++|+++ +..|.
T Consensus        95 ~~~--~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~  169 (661)
T PHA02917         95 TGY--SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDE  169 (661)
T ss_pred             cCC--CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccc
Confidence            332  23333  33778889999999999999999999999999999999964  4578999999999999987 65543


Q ss_pred             ---CC-----------chHHHHHHH-----------hCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCH--HHHH
Q 008557          260 ---KG-----------NTALHIAIK-----------KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT--ELFS  312 (561)
Q Consensus       260 ---~G-----------~TpLh~Aa~-----------~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~--~i~~  312 (561)
                         .|           .||||+|+.           .++.+++++|++ .|+|+|.+|.+|.||||+|+..|+.  ++++
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence               34           599999986           468999999999 8999999999999999999999985  7999


Q ss_pred             HHHHcCCccc
Q 008557          313 LLKEAGAAHS  322 (561)
Q Consensus       313 ~Ll~~ga~~~  322 (561)
                      +|++ |++..
T Consensus       249 ~Li~-g~d~~  257 (661)
T PHA02917        249 LLMK-GIDNT  257 (661)
T ss_pred             HHHh-CCccc
Confidence            9975 88764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=236.64  Aligned_cols=196  Identities=27%  Similarity=0.412  Sum_probs=175.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCcc-chhH--hhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKD--LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-~~~~--~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +.+|.|||-+||++||.++|++|++++... +.+.  -.+-.+.+|-+||..|+..||.++|+.|+.+  +++.+.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~--ga~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR--GASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh--cCcccccccc
Confidence            467789999999999999999999976532 1111  1233456899999999999999999999999  5777877788


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  273 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~  273 (561)
                      ..|||-.||..||.++++.|.+.+++++..|..|.|.||+||.+|+.+|+++|++.|+++ |.++..|+|+||.+++.|+
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhccc
Confidence            889999999999999999999999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       274 ~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      .+++++|+. +|+.++ +|..|.|||..|...|+.++++.|++.
T Consensus       196 vdivq~Ll~-~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  196 VDIVQLLLK-HGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHHHHHHHh-CCceee-ecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            999999999 788665 567799999999999999999999973

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=2.3e-27  Score=264.45  Aligned_cols=262  Identities=26%  Similarity=0.311  Sum_probs=211.8

Q ss_pred             CCCCCccccccc--ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHH
Q 008557           52 ALGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAAR  129 (561)
Q Consensus        52 ~~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~  129 (561)
                      ..|+.+.+....  +...+.+...+-++++.+...+.....+.+             .+++++++..+..|.||+|.|+.
T Consensus       383 ~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~-------------l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  383 KSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLL-------------LKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             ccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEE-------------eccCCChhhHhhcCCChhhhhhh
Confidence            444554444433  334555555555777777666643322221             15678888888888888888888


Q ss_pred             cC-CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHH
Q 008557          130 AG-NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLV  208 (561)
Q Consensus       130 ~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  208 (561)
                      .| ..+....+++.+      ..++..-..|.||||+|+..||.++++.|++.  .+..+.....|.+++|.|...++..
T Consensus       450 ~g~~~~~~~~l~~~g------~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~--~~~~~~~~~~~l~~lhla~~~~~v~  521 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYG------ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEG--GANDNLDAKKGLTPLHLAADEDTVK  521 (1143)
T ss_pred             cccHhhhhhhHhhcC------CCcchhccccCcchhhhhccCCchHHHHhhhc--CCccCccchhccchhhhhhhhhhHH
Confidence            88 677777777663      44778888899999999999999999988887  4566677778889999999999988


Q ss_pred             HHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCc
Q 008557          209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV  288 (561)
Q Consensus       209 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~  288 (561)
                      +...+...+...+.++..|.||||.||..|+.++|++||++++++ +.+|+.|+||||.||..|+.+|+.+|++ +|+++
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~v  599 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLK-HGASV  599 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHH-cCCCC
Confidence            888999999999999999999999999999999999999999998 8999999999999999999999999999 89999


Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----ccccCCCCCCHHHHHH
Q 008557          289 NSLNKAGESPLDVAEKLGNTELFSLLKEAGAA-----HSKDHGKPPSATKQLK  336 (561)
Q Consensus       289 n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~-----~~~~~~~~~~~~~~l~  336 (561)
                      |..|.+|.|||++|+..|+.+++++|+..+++     ....+.++.+|.+.-+
T Consensus       600 na~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e  652 (1143)
T KOG4177|consen  600 NAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAE  652 (1143)
T ss_pred             CcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHH
Confidence            99999999999999999999999999999999     4555555655554433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.1e-26  Score=236.19  Aligned_cols=206  Identities=17%  Similarity=0.067  Sum_probs=177.2

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHH--hCcHHHHHHHHhcCCCC
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE--SGHALIVEEMLQHMNLE  185 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~--~g~~~iv~~LL~~~~~~  185 (561)
                      ..|+++|..+.+|     +|+..+..|+++.|+.++.....-..+-.++..++|+||+|+.  .|+.++|++|+++  |+
T Consensus        70 ~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~--GA  142 (437)
T PHA02795         70 IHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH--GA  142 (437)
T ss_pred             HcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC--CC
Confidence            4677888887777     9999999999999999976421111111678889999999999  9999999999999  66


Q ss_pred             CCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcc-cc-----CCCCCcHHHHHHhCCCHHHHHHHhcCCCCccccccc
Q 008557          186 TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGF-RT-----DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN  259 (561)
Q Consensus       186 ~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~-~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~  259 (561)
                      +++.  .++.||||.|+..|+.++.++|...|+... ..     +..|.|++|.|+..++.+++++|+++|+++ |.+|.
T Consensus       143 DIn~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~  219 (437)
T PHA02795        143 VIYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDA  219 (437)
T ss_pred             CCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCC
Confidence            6665  356899999999999999999999886432 22     134789999999999999999999999998 99999


Q ss_pred             CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC--------HHHHHHHHHcCCccccc
Q 008557          260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN--------TELFSLLKEAGAAHSKD  324 (561)
Q Consensus       260 ~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~--------~~i~~~Ll~~ga~~~~~  324 (561)
                      .|+||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+        .+++++|+++|++.+..
T Consensus       220 ~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        220 GGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            99999999999999999999999 899999999999999999999984        69999999999987653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=5.4e-27  Score=261.58  Aligned_cols=218  Identities=30%  Similarity=0.413  Sum_probs=191.4

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC-cHHHHHHHHhcCCCCC
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG-HALIVEEMLQHMNLET  186 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g-~~~iv~~LL~~~~~~~  186 (561)
                      ++++++|..++.|.||||.|+..++..+|+.+++.++      ..+..+..|.||+|+|+..| ..+++..++++  +.+
T Consensus       395 ~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA------~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~--g~~  466 (1143)
T KOG4177|consen  395 EAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGA------SPNAKAKLGYTPLHVAAKKGRYLQIARLLLQY--GAD  466 (1143)
T ss_pred             hccCCcccCCCCCcceeeehhhccCcceEEEEeccCC------ChhhHhhcCCChhhhhhhcccHhhhhhhHhhc--CCC
Confidence            5677788888888888888888888888888888744      36777788888888888888 78888888887  667


Q ss_pred             CCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557          187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH  266 (561)
Q Consensus       187 ~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh  266 (561)
                      ++.....|.||||+|+..||..+..++.+..+..+...+.|-|+||.|...+...+++.++++|.++ +.++..|+||||
T Consensus       467 ~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh  545 (1143)
T KOG4177|consen  467 PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLH  545 (1143)
T ss_pred             cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHH
Confidence            7888888888999888888888888888888777777788888999998888888899999888887 899999999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      .|+.+|+..+|++||+ +|+|++.+|+.|+||||.|+..|+.+|+++|+++||+++..+.++.+|....
T Consensus       546 ~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  546 VAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             HHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            9999999999999999 8999999999999999999999999999999999999999988888876544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4.3e-25  Score=211.45  Aligned_cols=177  Identities=13%  Similarity=0.130  Sum_probs=156.0

Q ss_pred             hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcC--HHHHHHHHhcCCCCccccC-CCCC
Q 008557          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG--HLVVKALVSKDPSTGFRTD-KKGQ  228 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~v~~lL~~~~~~~~~~d-~~g~  228 (561)
                      .+.....+.||||+|+..|+.++|+.|+..     .+..|..|.||||+|+..+  +.++.++|.+.+++++.++ ..|+
T Consensus        14 ~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~   88 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNL   88 (209)
T ss_pred             HHHHhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCC
Confidence            334467789999999999999999999975     2456889999999999855  7899999999999998887 5899


Q ss_pred             cHHHHHHhC---CCHHHHHHHhcCCCCcccccccCCchHHHHHHH--hCCHHHHHHHhhcCCCCcccccCCCCCHHHH-H
Q 008557          229 TALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK--KGRTQIVRCLLSIEGIDVNSLNKAGESPLDV-A  302 (561)
Q Consensus       229 tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~--~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~-A  302 (561)
                      ||||+|+..   ++.+++++|+++|+++ +.+|..|.||||+|+.  .++.+++++|++ .|++++.+|.+|.||||. |
T Consensus        89 TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a  166 (209)
T PHA02859         89 SALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             CHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHH
Confidence            999998753   5799999999999998 9999999999999986  468999999999 899999999999999996 5


Q ss_pred             HHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          303 EKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       303 ~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      +..++.+++++|+++|++++..+..+.+|....
T Consensus       167 ~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la  199 (209)
T PHA02859        167 LFHSDKKIFDFLTSLGIDINETNKSGYNCYDLI  199 (209)
T ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            667899999999999999999888898887654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=5e-25  Score=243.12  Aligned_cols=232  Identities=18%  Similarity=0.131  Sum_probs=185.6

Q ss_pred             ccccccCCCCcccccccchhh---hhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHH----HH
Q 008557           64 GVTIDKQPSTRGVMEKQKSFR---GFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLS----RV  136 (561)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~----~v  136 (561)
                      +...+..++.+.++++.++..   |+.+..+.+.             +.|++++..+..|+||||+|+..|+.+    ++
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll-------------~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLL-------------DSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHH-------------HCCCCccccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            334455577778999986555   5455554332             568999999999999999999999965    45


Q ss_pred             HHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHH--HcCHHHHHHHHh
Q 008557          137 MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA--KQGHLVVKALVS  214 (561)
Q Consensus       137 ~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa--~~g~~~v~~lL~  214 (561)
                      +.|++.++.      .+..+  ..+++|+|+..|+.++|++|+++  +++++..|.+|.||||.|+  ..|+.++.++|.
T Consensus        89 ~~Ll~~~~~------~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~--Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi  158 (661)
T PHA02917         89 MALLEATGY------SNIND--FNIFSYMKSKNVDVDLIKVLVEH--GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFI  158 (661)
T ss_pred             HHHHhccCC------CCCCC--cchHHHHHhhcCCHHHHHHHHHc--CCCCCccCCCCccHHHHHHHccCCCHHHHHHHH
Confidence            667765331      12222  33788889999999999999998  7899999999999999654  578999999999


Q ss_pred             cCCCCccccCC---CC-----------CcHHHHHHh-----------CCCHHHHHHHhcCCCCcccccccCCchHHHHHH
Q 008557          215 KDPSTGFRTDK---KG-----------QTALHMAVK-----------GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  269 (561)
Q Consensus       215 ~~~~~~~~~d~---~g-----------~tpLh~A~~-----------~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa  269 (561)
                      ..|++++..|.   .|           .||||+|+.           .++.++|++|++.|+++ |..|.+|+||||+|+
T Consensus       159 ~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~  237 (661)
T PHA02917        159 ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYI  237 (661)
T ss_pred             HcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHH
Confidence            99998875543   23           599999986           46899999999999998 999999999999999


Q ss_pred             HhCCH--HHHHHHhhcCCCCcc----cccCCCCCHHHHHHHc---------CCHHHHHHHHHcCCcc
Q 008557          270 KKGRT--QIVRCLLSIEGIDVN----SLNKAGESPLDVAEKL---------GNTELFSLLKEAGAAH  321 (561)
Q Consensus       270 ~~g~~--~iv~~LL~~~gad~n----~~d~~G~TpL~~A~~~---------~~~~i~~~Ll~~ga~~  321 (561)
                      ..|+.  ++|++|++  |++++    ..|..|.||+++|+..         .+.+++++|+++|++.
T Consensus       238 ~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        238 KSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             HcCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            99985  79999974  88775    4667789999999842         1779999999999874

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.1e-24  Score=232.38  Aligned_cols=223  Identities=12%  Similarity=0.060  Sum_probs=189.0

Q ss_pred             ccCCCCCCCCCCCChHHHHHHH-cCCHHHHHHHHhcCCccc------------------------------hhHhhccCC
Q 008557          108 ERKKNKDSPGKRGDLQLHLAAR-AGNLSRVMEILQSCDANE------------------------------AKDLLSKKN  156 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~------------------------------~~~~~~~~~  156 (561)
                      ++|+++|.++..|.||||+|+. .|+.|++++||++|++.+                              .+-.++..|
T Consensus        93 ~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  172 (631)
T PHA02792         93 SKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDD  172 (631)
T ss_pred             HcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCC
Confidence            5799999999999999999976 699999999999986411                              112456778


Q ss_pred             CCCCcHHHHHHHhC-------cHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHH----------------------
Q 008557          157 QEGETPLYVAAESG-------HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL----------------------  207 (561)
Q Consensus       157 ~~g~TpLh~Aa~~g-------~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~----------------------  207 (561)
                      ..|.||||+|+..+       +.|+++.|+++  +++.+..|..|.||||+|+.+.+.                      
T Consensus       173 ~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~--g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        173 RMGKTVLYYYIITRSQDGYATSLDVINYLISH--EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCCchHHHHHhhCCcccccCCHHHHHHHHhC--CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            88999999999999       89999999999  778888999999999999998832                      


Q ss_pred             -----------------------------------------------------------------------HHHHHHhcC
Q 008557          208 -----------------------------------------------------------------------VVKALVSKD  216 (561)
Q Consensus       208 -----------------------------------------------------------------------~v~~lL~~~  216 (561)
                                                                                             ++.++|.+.
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                                                                                   555556666


Q ss_pred             CCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCC--chHHHHHHHhCCH---HHHHHHhhcCCCCcccc
Q 008557          217 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG--NTALHIAIKKGRT---QIVRCLLSIEGIDVNSL  291 (561)
Q Consensus       217 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G--~TpLh~Aa~~g~~---~iv~~LL~~~gad~n~~  291 (561)
                      |+...  ...+..++|.|+..|+.++|++|+++|+++ +.+|.+|  .||||+|+.....   +++++|++ .|+|+|.+
T Consensus       331 Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~k  406 (631)
T PHA02792        331 GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKI  406 (631)
T ss_pred             CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccc
Confidence            66543  223567899999999999999999999998 8888775  6999998876654   46788898 89999999


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          292 NKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       292 d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      |..|.||||+|+..++.+++++|+++|++++..+..+.+|.....
T Consensus       407 D~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        407 DKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999999999999998888888876543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=8.6e-23  Score=231.84  Aligned_cols=199  Identities=23%  Similarity=0.222  Sum_probs=159.7

Q ss_pred             CCCCCCCCCCCChHHH-HHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCC
Q 008557          110 KKNKDSPGKRGDLQLH-LAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES---GHALIVEEMLQHMNLE  185 (561)
Q Consensus       110 ~~~~~~~~~~G~T~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~~~~  185 (561)
                      +.++|..|..|.|||| .|+.+++.++++.|++.+.          .+..|.||||.|+..   +..++++.++......
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~  111 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS  111 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----------CCCcChHHHHHHHhccHHHHHHHHHHHhhccccc
Confidence            7889999999999999 9999999999999998742          577899999999872   2223344444432110


Q ss_pred             --------CCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC--------------CCCCcHHHHHHhCCCHHHH
Q 008557          186 --------TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD--------------KKGQTALHMAVKGQNEDIV  243 (561)
Q Consensus       186 --------~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv  243 (561)
                              .....+..|.||||+|+..|+.+++++|.+.+++++.++              ..|+||||.|+..|+.+++
T Consensus       112 ~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv  191 (743)
T TIGR00870       112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIV  191 (743)
T ss_pred             CchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHH
Confidence                    011123569999999999999999999999998877542              3589999999999999999


Q ss_pred             HHHhcCCCCcccccccCCchHHHHHHHhC---------CHHHHHHHhhcCCCC---c----ccccCCCCCHHHHHHHcCC
Q 008557          244 LELIRPDPSVLKLEDNKGNTALHIAIKKG---------RTQIVRCLLSIEGID---V----NSLNKAGESPLDVAEKLGN  307 (561)
Q Consensus       244 ~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g---------~~~iv~~LL~~~gad---~----n~~d~~G~TpL~~A~~~~~  307 (561)
                      ++|++.++++ +.+|..|+||||+|+..+         ...+.+++++ .+++   .    +..|.+|.||||+|+..|+
T Consensus       192 ~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~-ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~  269 (743)
T TIGR00870       192 ALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS-LLDKLRDSKELEVILNHQGLTPLKLAAKEGR  269 (743)
T ss_pred             HHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHhccCChHhhhhhcCCCCCCchhhhhhcCC
Confidence            9999999887 999999999999999987         2345566665 3443   3    6789999999999999999


Q ss_pred             HHHHHHHHHcCCc
Q 008557          308 TELFSLLKEAGAA  320 (561)
Q Consensus       308 ~~i~~~Ll~~ga~  320 (561)
                      .+++++|++.+.+
T Consensus       270 ~~l~~lLL~~~~~  282 (743)
T TIGR00870       270 IVLFRLKLAIKYK  282 (743)
T ss_pred             ccHHHHHHHHHHh
Confidence            9999999996654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=234.54  Aligned_cols=199  Identities=15%  Similarity=0.192  Sum_probs=164.9

Q ss_pred             CCCC-CCCCCCChHHHHHHHcC---CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC--cHHHHHHHHhcCCC
Q 008557          111 KNKD-SPGKRGDLQLHLAARAG---NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQHMNL  184 (561)
Q Consensus       111 ~~~~-~~~~~G~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~iv~~LL~~~~~  184 (561)
                      +++| ..|..|+||||+|+..|   +.++|+.||++|      ++++.+|..|+||||+|+..|  +.|+|++|++.+.+
T Consensus        31 ~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G------Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~  104 (672)
T PHA02730         31 HNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG------VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN  104 (672)
T ss_pred             cchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC------CCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC
Confidence            3555 77889999999999997   599999999985      458899999999999999977  79999999999666


Q ss_pred             CCCCcCCCCCCcHHHHHHH--cCHHHHHHHHhc-CCCCccccC-----CCCCcHHHHHHhCCCHHHHHHHhcCCCCcc--
Q 008557          185 ETASIPARNGYDSFHVAAK--QGHLVVKALVSK-DPSTGFRTD-----KKGQTALHMAVKGQNEDIVLELIRPDPSVL--  254 (561)
Q Consensus       185 ~~~~~~~~~g~tpLh~Aa~--~g~~~v~~lL~~-~~~~~~~~d-----~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--  254 (561)
                      ++.+..+..+.+|||.++.  +++.+++++|.. .+.+++...     ..|.+|+++|...++.++|++|++.|+++-  
T Consensus       105 ~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~  184 (672)
T PHA02730        105 ASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGY  184 (672)
T ss_pred             CCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccc
Confidence            6667778779999999888  888888887775 555555442     378999999999999999999999999872  


Q ss_pred             ----cccccCCc-hHHHHH------HHhCCHHHHHHHhhcCCCCcccccCCCCCHHHH--HHHcCCHHHHHHHHH
Q 008557          255 ----KLEDNKGN-TALHIA------IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV--AEKLGNTELFSLLKE  316 (561)
Q Consensus       255 ----n~~d~~G~-TpLh~A------a~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~--A~~~~~~~i~~~Ll~  316 (561)
                          ...|..+. |.||++      ..+++.+++++|++ +|+|+|.+|.+|.||||+  |...++.|++++|++
T Consensus       185 ~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs-~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        185 VFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLID-NNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             ccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence                12344444 556644      35678999999999 899999999999999995  555677999999999

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.3e-24  Score=248.18  Aligned_cols=180  Identities=26%  Similarity=0.287  Sum_probs=162.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (561)
Q Consensus       116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~  195 (561)
                      .+..+.++||.||..|+.++++.|++.+.      +++..|.+|.||||+||..|+.+++++|+++  +++++.+|.+|.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~------d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~--gadin~~d~~G~  592 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKL------DPDIGDSKGRTPLHIAASKGYEDCVLVLLKH--ACNVHIRDANGN  592 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcChHHHHHHHHhc--CCCCCCcCCCCC
Confidence            34567899999999999999999998854      4788999999999999999999999999998  678889999999


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..||..+.++|...++..+  +..|.++||.|+..|+.+++++|+++|+++ |.+|.+|+||||+|+..|+.+
T Consensus       593 TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~  669 (823)
T PLN03192        593 TALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVD  669 (823)
T ss_pred             CHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            99999999999999999988776654  356789999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCC-CCHHHHHHHcCC
Q 008557          276 IVRCLLSIEGIDVNSLNKAG-ESPLDVAEKLGN  307 (561)
Q Consensus       276 iv~~LL~~~gad~n~~d~~G-~TpL~~A~~~~~  307 (561)
                      ++++|++ .|+|++..|..| .||++++.....
T Consensus       670 iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        670 MVRLLIM-NGADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHHHHH-cCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999 899999999988 999988865443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=7.2e-24  Score=228.56  Aligned_cols=243  Identities=13%  Similarity=0.110  Sum_probs=158.6

Q ss_pred             cCCCCcccccccchhhhh---HHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhcC
Q 008557           69 KQPSTRGVMEKQKSFRGF---IEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAG--NLSRVMEILQSC  143 (561)
Q Consensus        69 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g--~~~~v~~Ll~~~  143 (561)
                      .++..|.++++.+...++   .+..+.+.             +.|++++.+|..|+||||+|+..|  +.|+|+.|++.+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLL-------------s~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~  102 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLL-------------SRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSY  102 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHH-------------hCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcC
Confidence            566677799999888763   44444322             689999999999999999999977  799999999985


Q ss_pred             CccchhHhhccCCC-----------------------------------------CCCcHHHHHHHhCcHHHHHHHHhcC
Q 008557          144 DANEAKDLLSKKNQ-----------------------------------------EGETPLYVAAESGHALIVEEMLQHM  182 (561)
Q Consensus       144 ~~~~~~~~~~~~~~-----------------------------------------~g~TpLh~Aa~~g~~~iv~~LL~~~  182 (561)
                      ...    ..+..+.                                         .|.+|+++|+..++.|+|++|+++ 
T Consensus       103 ~~~----~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~-  177 (672)
T PHA02730        103 SNA----SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS-  177 (672)
T ss_pred             CCC----CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc-
Confidence            411    1122222                                         456666666666666666666666 


Q ss_pred             CCCCCC-------cCCCCCCc-HHHHHH------HcCHHHHHHHHhcCCCCccccCCCCCcHHHH--HHhCCCHHHHHHH
Q 008557          183 NLETAS-------IPARNGYD-SFHVAA------KQGHLVVKALVSKDPSTGFRTDKKGQTALHM--AVKGQNEDIVLEL  246 (561)
Q Consensus       183 ~~~~~~-------~~~~~g~t-pLh~Aa------~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~--A~~~g~~~iv~~L  246 (561)
                       +++.+       ..+..+.+ .||+++      ..++.++.++|...|++++.+|.+|+||||+  |...|+.|+|++|
T Consensus       178 -g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~L  256 (672)
T PHA02730        178 -ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLL  256 (672)
T ss_pred             -CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHH
Confidence             22221       12233333 334332      3344567777777777777777777777773  4445667777777


Q ss_pred             hc--------------------------------CCCCcccc--------------------cccCCch-----------
Q 008557          247 IR--------------------------------PDPSVLKL--------------------EDNKGNT-----------  263 (561)
Q Consensus       247 l~--------------------------------~~~~~~n~--------------------~d~~G~T-----------  263 (561)
                      ++                                .|.+. ..                    .|..|.+           
T Consensus       257 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~  335 (672)
T PHA02730        257 IKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRF  335 (672)
T ss_pred             HhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhh
Confidence            77                                34333 12                    4455543           


Q ss_pred             ----------HHHHHHHhC---CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC----HHHHHHHHHcCC--ccccc
Q 008557          264 ----------ALHIAIKKG---RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN----TELFSLLKEAGA--AHSKD  324 (561)
Q Consensus       264 ----------pLh~Aa~~g---~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~----~~i~~~Ll~~ga--~~~~~  324 (561)
                                .||.=...+   +.+++++|++ +||++|.. ..|.||||+|+..++    .+++++|+++|+  +.+..
T Consensus       336 ~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs-~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~k  413 (672)
T PHA02730        336 RQQDESIVQAMLINYLHYGDMVSIPILRCMLD-NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHV  413 (672)
T ss_pred             hccchhHHHHHHHHHHhcCCcCcHHHHHHHHH-CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccc
Confidence                      455555544   4677777777 68888874 688888888877764    788888888887  45555


Q ss_pred             CCCCCCHHH
Q 008557          325 HGKPPSATK  333 (561)
Q Consensus       325 ~~~~~~~~~  333 (561)
                      +..+.+|..
T Consensus       414 d~~G~T~Lh  422 (672)
T PHA02730        414 SNNGRLCMY  422 (672)
T ss_pred             ccCCCchHh
Confidence            566666653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=6.6e-25  Score=229.62  Aligned_cols=223  Identities=23%  Similarity=0.279  Sum_probs=200.3

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q 008557          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS  188 (561)
Q Consensus       109 ~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~  188 (561)
                      +....|..|.+|.|+||.||.+|+.++++.|++.      .+.++..|..|.+|||+|++.|+.++|++||.+  .+..+
T Consensus        38 rsds~n~qd~~gfTalhha~Lng~~~is~llle~------ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q--~d~~n  109 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY------EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ--TDILN  109 (854)
T ss_pred             CCccccccCccchhHHHHHHhcCchHHHHHHhcc------hhhhhhhhccCcceEEehhhcCcchHHHHHHhc--ccCCC
Confidence            4456778889999999999999999999999988      356788889999999999999999999999999  47788


Q ss_pred             cCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCc-------ccccccCC
Q 008557          189 IPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-------LKLEDNKG  261 (561)
Q Consensus       189 ~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~-------~n~~d~~G  261 (561)
                      ..+..|.||||.|+..||.++.++|...+++...+|..+.|+|-+|++.|..++|+.|+...-..       ...++-.+
T Consensus       110 a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~  189 (854)
T KOG0507|consen  110 AVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPA  189 (854)
T ss_pred             cccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999863111       12345678


Q ss_pred             chHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHHHHHhh
Q 008557          262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSD  341 (561)
Q Consensus       262 ~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~~~~~~  341 (561)
                      .+|||+|+++|+.++++.|++ .|.|+|....+| |+||.|+.+|..+++.+|++.|......+..+.+..+.+.+....
T Consensus       190 ~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~  267 (854)
T KOG0507|consen  190 IYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQEN  267 (854)
T ss_pred             cCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchh
Confidence            899999999999999999999 899999998887 899999999999999999999999999999998888776654443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=1e-23  Score=217.64  Aligned_cols=198  Identities=17%  Similarity=0.103  Sum_probs=166.9

Q ss_pred             ccCCCCC------CCCCCCChHHHHHHH--cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 008557          108 ERKKNKD------SPGKRGDLQLHLAAR--AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML  179 (561)
Q Consensus       108 ~~~~~~~------~~~~~G~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL  179 (561)
                      .++++++      .++..++|+||.|+.  .|+.++|++|+++|+      +++.  .++.||||.|+..|+.++|++|+
T Consensus        98 s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GA------DIn~--~~~~t~lh~A~~~~~~eIVk~Ll  169 (437)
T PHA02795         98 SKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGA------VIYK--IECLNAYFRGICKKESSVVEFIL  169 (437)
T ss_pred             hcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCC------CCCC--CCCCCHHHHHHHcCcHHHHHHHH
Confidence            4677777      788889999999999  899999999999965      3555  34589999999999999999999


Q ss_pred             hcCCCCCCCcC-----CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcc
Q 008557          180 QHMNLETASIP-----ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL  254 (561)
Q Consensus       180 ~~~~~~~~~~~-----~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  254 (561)
                      +++.. ..+..     +..|.||+|.|+..++.++.++|...+++++.+|..|+||||+|+..|+.+++++|++.|+++ 
T Consensus       170 s~Ga~-~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-  247 (437)
T PHA02795        170 NCGIP-DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-  247 (437)
T ss_pred             hcCCc-ccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-
Confidence            99432 22211     235889999999999999999999999999999999999999999999999999999999998 


Q ss_pred             cccccCCchHHHHHHHhCC--------HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          255 KLEDNKGNTALHIAIKKGR--------TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       255 n~~d~~G~TpLh~Aa~~g~--------~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      +.+|..|+||||+|+..|+        .+++++|++ .|++++..+..+   +..  ...+.++++.+++++...
T Consensus       248 N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~~~---~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        248 NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKLAI---LNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhHHh---hhc--ccchHHHHHHHHHHHHhc
Confidence            9999999999999999984        699999998 899888755432   211  122678999998887655

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=196.84  Aligned_cols=196  Identities=23%  Similarity=0.285  Sum_probs=170.1

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (561)
Q Consensus       113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~  192 (561)
                      ++.++++|++++|.|+-.|+...+..+|.++..      .|..+-.+++|+.+++..-|.+.+..+.+.    ..+..|+
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r------gnevs~~p~s~~slsVhql~L~~~~~~~~n----~VN~~De  158 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR------GNEVSLMPWSPLSLSVHQLHLDVVDLLVNN----KVNACDE  158 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeeccccc------CCccccccCChhhHHHHHHHHHHHHHHhhc----cccCccc
Confidence            345677799999999999999999988887543      677788899999999999998888887764    5677899


Q ss_pred             CCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      .|.|||.+|+..|++.++++|...|++++...+...|+|.+|+..|..++|++||..+.++ |..|.+|-|||-+|++-|
T Consensus       159 ~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgn  237 (296)
T KOG0502|consen  159 FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGN  237 (296)
T ss_pred             cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCC
Confidence            9999999999999999999999999999888888889999999999999999999999988 999999999999999999


Q ss_pred             CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       273 ~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      +.++++.||. .|+|++..|..|++++++|+..|+. +++..++.-+..
T Consensus       238 hvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lk  284 (296)
T KOG0502|consen  238 HVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALK  284 (296)
T ss_pred             hHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            9999999998 8999999999999999999999887 666666655443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=5.9e-23  Score=219.23  Aligned_cols=264  Identities=13%  Similarity=0.089  Sum_probs=204.3

Q ss_pred             CCCCCCccccccc--ccccccCCCCcccccccchh-hhhHHHHHHHHHHHHHHh--------------------hh---c
Q 008557           51 SALGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSF-RGFIEKQKSFRVVMERQL--------------------SF---I  104 (561)
Q Consensus        51 ~~~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l--------------------~~---~  104 (561)
                      +..|++|.++.+.  |+.++..+..+.+++..+.. .++.+..+.+.......-                    .+   .
T Consensus        80 s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~  159 (631)
T PHA02792         80 SDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDEL  159 (631)
T ss_pred             HhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhc
Confidence            4678888888664  67777777766677777744 577777776554321100                    00   1


Q ss_pred             CCCccCCCCCCCCCCCChHHHHHHHcC-------CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhC--cHHHH
Q 008557          105 GGGERKKNKDSPGKRGDLQLHLAARAG-------NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIV  175 (561)
Q Consensus       105 ~~~~~~~~~~~~~~~G~T~Lh~Aa~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~iv  175 (561)
                      ...+-+..+|..|..|.||||+|+.++       +.++++.||.+++      .++..|..|.||||+|+.+.  +.|++
T Consensus       160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~------~~~~~d~~g~t~l~~~~~~~~i~~ei~  233 (631)
T PHA02792        160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK------EMRYYTYREHTTLYYYVDKCDIKREIF  233 (631)
T ss_pred             cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC------CcCccCCCCChHHHHHHHcccchHHHH
Confidence            112233456788889999999999999       8999999999954      47888999999999999999  78888


Q ss_pred             HHHHhcCC--------------------C--CC-----------------------------------------------
Q 008557          176 EEMLQHMN--------------------L--ET-----------------------------------------------  186 (561)
Q Consensus       176 ~~LL~~~~--------------------~--~~-----------------------------------------------  186 (561)
                      ++|++...                    .  .+                                               
T Consensus       234 ~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Y  313 (631)
T PHA02792        234 DALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEY  313 (631)
T ss_pred             HHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            88876410                    0  00                                               


Q ss_pred             ------------------CCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCC--CcHHHHHHhCCCHH---HH
Q 008557          187 ------------------ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG--QTALHMAVKGQNED---IV  243 (561)
Q Consensus       187 ------------------~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g--~tpLh~A~~~g~~~---iv  243 (561)
                                        .......+..+++.|+..|+..++++|...|++++.+|.+|  .||||+|+.....+   ++
T Consensus       314 l~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        314 VSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             HhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence                              00001124567899999999999999999999999888775  69999988776654   58


Q ss_pred             HHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH--c-C-------CHHHHHH
Q 008557          244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK--L-G-------NTELFSL  313 (561)
Q Consensus       244 ~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~--~-~-------~~~i~~~  313 (561)
                      ++|++.|+++ |.+|..|+||||+|+..++.+++++|++ .|+++|.+|..|+||||+|..  . +       ..+++++
T Consensus       394 klLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~l  471 (631)
T PHA02792        394 KLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEI  471 (631)
T ss_pred             HHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            8889999997 9999999999999999999999999999 799999999999999999976  2 2       2567889


Q ss_pred             HHHcCCccc
Q 008557          314 LKEAGAAHS  322 (561)
Q Consensus       314 Ll~~ga~~~  322 (561)
                      |+++|.++.
T Consensus       472 LLs~~p~i~  480 (631)
T PHA02792        472 ILSKLPTIE  480 (631)
T ss_pred             HHhcCCChh
Confidence            999987653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=8.9e-23  Score=233.24  Aligned_cols=172  Identities=24%  Similarity=0.297  Sum_probs=157.6

Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 008557          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMA  234 (561)
Q Consensus       155 ~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A  234 (561)
                      .+.++.++||.||..|+.++++.|++.  +.+++..|.+|.||||+|+..|+.++.++|.+.+.+++.+|.+|+||||+|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            355678999999999999999999998  778899999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 008557          235 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  314 (561)
Q Consensus       235 ~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~L  314 (561)
                      +..|+.+++++|++.++.. +  +..|.++||.|+..|+.++++.|++ .|+|+|.+|.+|.||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc-C--cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999876543 2  3467799999999999999999999 8999999999999999999999999999999


Q ss_pred             HHcCCcccccCCCC-CCHH
Q 008557          315 KEAGAAHSKDHGKP-PSAT  332 (561)
Q Consensus       315 l~~ga~~~~~~~~~-~~~~  332 (561)
                      +++||+++..+..+ .+|.
T Consensus       675 l~~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        675 IMNGADVDKANTDDDFSPT  693 (823)
T ss_pred             HHcCCCCCCCCCCCCCCHH
Confidence            99999998877766 4444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=7.4e-24  Score=204.84  Aligned_cols=184  Identities=24%  Similarity=0.328  Sum_probs=160.3

Q ss_pred             CHHHHHHHHhcCC---ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHc----
Q 008557          132 NLSRVMEILQSCD---ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQ----  204 (561)
Q Consensus       132 ~~~~v~~Ll~~~~---~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~----  204 (561)
                      +.+.|+..|....   ...+.-.+|..|.+|+|+||||+.++++++|+.||+. +..+++.+++.|+||+++|+..    
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDS-gvC~VD~qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDS-GVCDVDQQNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhcc-CcccccccccccccHHHHHHHHhhcc
Confidence            6777777665432   2223456899999999999999999999999999998 5778899999999999999864    


Q ss_pred             -CHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc
Q 008557          205 -GHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  283 (561)
Q Consensus       205 -g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  283 (561)
                       .+..++.-|-+.++..-.-...|+|+|++|+.+|+.++|+.||..|+++ |.+|.+|.|+|+.|+.+||.||+++||..
T Consensus       317 ~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  317 PADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence             3445666666666665555778999999999999999999999999998 99999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       284 ~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      .++|....|.+|-|+|.+|...|+.||.-+|..+
T Consensus       396 p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  396 PSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999999999999988764

>PF13962 PGG: Domain of unknown function

Probab=99.90  E-value=2e-23  Score=178.98  Aligned_cols=112  Identities=35%  Similarity=0.515  Sum_probs=94.5

Q ss_pred             ccccccchhhhHHHHHHHHHHHhHhhhcCCCccccccccCCCccccccccCc-chHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008557          372 ISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNA-AFIIFFVFDSLALFISLAVVVVQTSVV  450 (561)
Q Consensus       372 ~e~l~~~~~s~~vva~Liatv~f~a~~~~PGg~~~~~~~~~~~g~~~~~~~~-~f~~f~~~~~~a~~~S~~~v~~~~~~~  450 (561)
                      +||++++++++++||+|||||||||++|||||+|++++   ..|+|++.+++ .|.+|+++|++||++|+++++++++.+
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~---~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD---DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc---CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36788899999999999999999999999999998862   66999999888 999999999999999999998877422


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008557          451 VIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVV  486 (561)
Q Consensus       451 ~~~~~~~~~~~~~~~~l~~~~~~~~~~af~~~~~~v  486 (561)
                      ....+.+.........+||+++.+|++||++|+|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            111223334566778999999999999999999975

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=5.5e-21  Score=217.16  Aligned_cols=206  Identities=19%  Similarity=0.152  Sum_probs=164.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHH-HHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCc
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLY-VAAESGHALIVEEMLQHMNLETASIPARNGYD  196 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh-~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~t  196 (561)
                      ..++.+|+.||+.|+.+.|+.+++...    +.++|..|..|.|||| .|+..++.+++++|++++  .    .+..|.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~----~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g--~----~~~~G~T   84 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPK----KLNINCPDRLGRSALFVAAIENENLELTELLLNLS--C----RGAVGDT   84 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhcccc----ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCC--C----CCCcChH
Confidence            456899999999999999999998743    3458889999999999 899999999999999983  2    6788999


Q ss_pred             HHHHHHHcCHH---HHHHHHhcCCCC----------ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc-----
Q 008557          197 SFHVAAKQGHL---VVKALVSKDPST----------GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-----  258 (561)
Q Consensus       197 pLh~Aa~~g~~---~v~~lL~~~~~~----------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-----  258 (561)
                      |||.|+.+++.   .+..++...+..          ....+..|.||||+|+.+|+.++|++|+++|+++ +.++     
T Consensus        85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~  163 (743)
T TIGR00870        85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFF  163 (743)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchh
Confidence            99999985444   333333333311          1112356999999999999999999999999887 5432     


Q ss_pred             ---------cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC---------CHHHHHHHHHcCCc
Q 008557          259 ---------NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG---------NTELFSLLKEAGAA  320 (561)
Q Consensus       259 ---------~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~---------~~~i~~~Ll~~ga~  320 (561)
                               ..|.||||.|+..|+.+++++|++ .|+|+|.+|..|+||||+|+..+         ...+.+++++.+++
T Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       164 VKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             hcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence                     368999999999999999999999 89999999999999999999986         23466777777766


Q ss_pred             c-------cccCCCCCCHHHHH
Q 008557          321 H-------SKDHGKPPSATKQL  335 (561)
Q Consensus       321 ~-------~~~~~~~~~~~~~l  335 (561)
                      .       +..+..+.+|....
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A  264 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLA  264 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhh
Confidence            4       33456666765443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=7.6e-23  Score=207.85  Aligned_cols=206  Identities=26%  Similarity=0.334  Sum_probs=169.1

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK  155 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  155 (561)
                      .....++..|.++....+.             ..++++|..|.+|.|+||-||...|.++|++|++.+      +++|..
T Consensus        42 a~~l~A~~~~d~~ev~~ll-------------~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~g------a~Vn~~  102 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLL-------------NRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENG------ANVNAQ  102 (527)
T ss_pred             HHHHhccccccHHHHHHHh-------------ccCCCccccCCccchhHHHHHhcccHHHHHHHHHhc------CCcccc
Confidence            4455566666554444332             345778999999999999999999999999999984      569999


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHH---------------------------H
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL---------------------------V  208 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~---------------------------~  208 (561)
                      |.+|+||||.|+..||..++++|+++  +++....+.+|..|+..+...-..                           +
T Consensus       103 d~e~wtPlhaaascg~~~i~~~li~~--gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D  180 (527)
T KOG0505|consen  103 DNEGWTPLHAAASCGYLNIVEYLIQH--GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDD  180 (527)
T ss_pred             ccccCCcchhhcccccHHHHHHHHHh--hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHH
Confidence            99999999999999999999999999  566666666666665443322111                           4


Q ss_pred             HHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCc
Q 008557          209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV  288 (561)
Q Consensus       209 v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~  288 (561)
                      +...+. .+...+.++..|.|.||+|+.+|..++.++|++.+.++ +.+|.+|+||||.|+..|..+++++|++ +|++.
T Consensus       181 ~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~  257 (527)
T KOG0505|consen  181 ARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVE-HGADM  257 (527)
T ss_pred             HHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHH-hhccc
Confidence            555555 66666777777999999999999999999999999988 9999999999999999999999998888 89999


Q ss_pred             ccccCCCCCHHHHHHHc
Q 008557          289 NSLNKAGESPLDVAEKL  305 (561)
Q Consensus       289 n~~d~~G~TpL~~A~~~  305 (561)
                      +..+..|.||+++|..-
T Consensus       258 d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  258 DAKTKMGETPLDVADEE  274 (527)
T ss_pred             chhhhcCCCCccchhhh
Confidence            99999999999998753

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=9.7e-23  Score=184.48  Aligned_cols=232  Identities=19%  Similarity=0.163  Sum_probs=187.9

Q ss_pred             CCCCCCCCCCCCCCc--ccccccccc-cccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCC
Q 008557           43 GESTDKPPSALGPME--KQQSFHGVT-IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKR  119 (561)
Q Consensus        43 ~~~~~~~~~~~g~~e--~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  119 (561)
                      |.+-++-....|+..  ....+.... +...+..+......+...|+..++..             ...+++..|..+-.
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~st-------------tltN~~rgnevs~~  128 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVST-------------TLTNGARGNEVSLM  128 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeee-------------eecccccCCccccc
Confidence            444444444444443  333333332 22233334455555555554333322             12567778888999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      +++|+.+++...+++.+..+.+.        .+|..|+.|.|||.||+..|+.++|++||+.  ++++....+...|+|.
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n--------~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~--GAdp~~lgk~resALs  198 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNN--------KVNACDEFGFTPLIWAAAKGHIPVVQFLLNS--GADPDALGKYRESALS  198 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhc--------cccCccccCchHhHHHHhcCchHHHHHHHHc--CCChhhhhhhhhhhHh
Confidence            99999999999999988888754        3899999999999999999999999999998  7888888888999999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                      +|+..|..+++++|..+..+++..|-+|-|||.+|++.|+.+||+.|+..|+++ +..|..|++++.+|+..|+. +|+.
T Consensus       199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~-t~e~dsGy~~mdlAValGyr-~Vqq  276 (296)
T KOG0502|consen  199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV-TQEDDSGYWIMDLAVALGYR-IVQQ  276 (296)
T ss_pred             HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCc-ccccccCCcHHHHHHHhhhH-HHHH
Confidence            999999999999999999999999999999999999999999999999999998 89999999999999999988 8888


Q ss_pred             HhhcCCCCcccccCCCCCHHH
Q 008557          280 LLSIEGIDVNSLNKAGESPLD  300 (561)
Q Consensus       280 LL~~~gad~n~~d~~G~TpL~  300 (561)
                      .++ ..++.+.+|+.-.||+|
T Consensus       277 vie-~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  277 VIE-KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHH-HHHHHHhhcccCCCCCC
Confidence            888 56788888888888875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=2.5e-22  Score=194.31  Aligned_cols=165  Identities=24%  Similarity=0.292  Sum_probs=149.2

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHh-----CcHHHHHHHHhcCCCC
Q 008557          111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES-----GHALIVEEMLQHMNLE  185 (561)
Q Consensus       111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~-----g~~~iv~~LL~~~~~~  185 (561)
                      ..+|..|.+|+|+||||+.++|.++|+.||+.+.     .+++.+|..|+||.++|+..     .+.++|..|...+   
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv-----C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg---  330 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSGV-----CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG---  330 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccCc-----ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc---
Confidence            4567889999999999999999999999999875     55999999999999999874     5788999999873   


Q ss_pred             CCCc-CCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchH
Q 008557          186 TASI-PARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA  264 (561)
Q Consensus       186 ~~~~-~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp  264 (561)
                      +++. ....|+|+|++|+.+|..++++.|+.++++++..|.+|.|+|++||.+||.|++++||......+...|.+|.|+
T Consensus       331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTA  410 (452)
T KOG0514|consen  331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTA  410 (452)
T ss_pred             CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchh
Confidence            2333 345699999999999999999999999999999999999999999999999999999998777678999999999


Q ss_pred             HHHHHHhCCHHHHHHHhhc
Q 008557          265 LHIAIKKGRTQIVRCLLSI  283 (561)
Q Consensus       265 Lh~Aa~~g~~~iv~~LL~~  283 (561)
                      |.+|-..|+.+|.-+|..+
T Consensus       411 l~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  411 LSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhhHHhcCchHHHHHHHHH
Confidence            9999999999999888764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=3.5e-22  Score=209.34  Aligned_cols=226  Identities=26%  Similarity=0.318  Sum_probs=190.0

Q ss_pred             cccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCcc
Q 008557           67 IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN  146 (561)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~  146 (561)
                      .+.+|-.+-+.++.++..|+....+.+.             +..+.++..|..|.+|||+|++.|+.++|+.++.+.   
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~lll-------------e~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~---  105 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLL-------------DYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT---  105 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHh-------------cchhhhhhhhccCcceEEehhhcCcchHHHHHHhcc---
Confidence            4445555667778888877766655433             445666678899999999999999999999999885   


Q ss_pred             chhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCC-------
Q 008557          147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPST-------  219 (561)
Q Consensus       147 ~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~-------  219 (561)
                         +.+|..+.+|.||||.|+++||.++|.+|+++  ++++.+.|..+.|+|.+|++-|...|+.+|....-+       
T Consensus       106 ---d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~--~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~  180 (854)
T KOG0507|consen  106 ---DILNAVNIENETPLHLAAQHGHLEVVFYLLKK--NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRV  180 (854)
T ss_pred             ---cCCCcccccCcCccchhhhhcchHHHHHHHhc--CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccC
Confidence               45899999999999999999999999999999  788999999999999999999999888887664211       


Q ss_pred             -ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCH
Q 008557          220 -GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP  298 (561)
Q Consensus       220 -~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~Tp  298 (561)
                       ...++..+-+|||.|+++|+.++++.|++.|-++ |....+| |+||.|+..|..++|++||+ .|++...+|.+|+|+
T Consensus       181 ~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di-n~~t~~g-talheaalcgk~evvr~ll~-~gin~h~~n~~~qta  257 (854)
T KOG0507|consen  181 GDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI-NYTTEDG-TALHEAALCGKAEVVRFLLE-IGINTHIKNQHGQTA  257 (854)
T ss_pred             CCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc-ccccccc-hhhhhHhhcCcchhhhHHHh-hccccccccccchHH
Confidence             1234566889999999999999999999999988 8888777 99999999999999999999 899999999999999


Q ss_pred             HHHHHHcC---CHHHHHHHHH
Q 008557          299 LDVAEKLG---NTELFSLLKE  316 (561)
Q Consensus       299 L~~A~~~~---~~~i~~~Ll~  316 (561)
                      |++-....   ..+++-.+..
T Consensus       258 ldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  258 LDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             HHHHHhcchhhhhhhhhhhhc
Confidence            99987653   3455544443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.9e-21  Score=176.62  Aligned_cols=110  Identities=21%  Similarity=0.333  Sum_probs=70.4

Q ss_pred             CCCCccccCCCCCcHHHHHHhCCCHHH---HHHHhcCCCCcccccc-cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccc
Q 008557          216 DPSTGFRTDKKGQTALHMAVKGQNEDI---VLELIRPDPSVLKLED-NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL  291 (561)
Q Consensus       216 ~~~~~~~~d~~g~tpLh~A~~~g~~~i---v~~Ll~~~~~~~n~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~  291 (561)
                      .+...+..|.+|+||||+|+..|+.+.   +++|++.|+++ +.+| ..|+||||+|+..|+.+++++|+...|++++.+
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~  124 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAI  124 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCc
Confidence            333444455666666666666655433   56666666665 6665 367777777777777777777764356777777


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCC
Q 008557          292 NKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHG  326 (561)
Q Consensus       292 d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~  326 (561)
                      |..|.||||+|+..++.+++++|+++|++++....
T Consensus       125 d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743        125 NYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            77777777777777777777777777766654433

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=7.4e-21  Score=176.11  Aligned_cols=141  Identities=25%  Similarity=0.386  Sum_probs=114.3

Q ss_pred             hhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcH
Q 008557          151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTA  230 (561)
Q Consensus       151 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tp  230 (561)
                      +++.+|..|.||||+|++.|+.++++.|+....+.                             ..+...+.+|..|+||
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~-----------------------------~~ga~in~~d~~g~T~   63 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD-----------------------------CHAAALNATDDAGQMC   63 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc-----------------------------hhhhhhhccCCCCCcH
Confidence            45667788888888888888888888776531000                             1123345667888888


Q ss_pred             HHHHHhCCC----HHHHHHHhcCCCCccccccc-CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          231 LHMAVKGQN----EDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       231 Lh~A~~~g~----~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      ||+|+..|+    .+++++|++.++++ +.+|. +|+||||+|+..++.+++++|+...|++++..|.+|.||||+|...
T Consensus        64 Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~  142 (169)
T PHA02741         64 IHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN  142 (169)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC
Confidence            888888888    58899999999887 88885 8999999999999999999999756899999999999999999999


Q ss_pred             CCHHHHHHHHHcCCcc
Q 008557          306 GNTELFSLLKEAGAAH  321 (561)
Q Consensus       306 ~~~~i~~~Ll~~ga~~  321 (561)
                      ++.+++++|++.++..
T Consensus       143 ~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        143 EDVAMMQILREIVATS  158 (169)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=7.1e-21  Score=193.61  Aligned_cols=202  Identities=21%  Similarity=0.295  Sum_probs=173.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHH
Q 008557          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (561)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~A  201 (561)
                      -.+.-|+..|+.+-|+.||..+..      .+..|.+|.|+||-||...+.+||++|+++  +++++..|.+|+||||.|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~------~~~~n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaa  113 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGAS------PNLCNVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAA  113 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCC------ccccCCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhh
Confidence            346778899999999999988643      588999999999999999999999999999  789999999999999999


Q ss_pred             HHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHH--------------------------HHHHhcCCCCccc
Q 008557          202 AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI--------------------------VLELIRPDPSVLK  255 (561)
Q Consensus       202 a~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~i--------------------------v~~Ll~~~~~~~n  255 (561)
                      +..||..+..+|...++....++.+|..|+-.+...-..++                          +...+..|... +
T Consensus       114 ascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d  192 (527)
T KOG0505|consen  114 ASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-D  192 (527)
T ss_pred             cccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-c
Confidence            99999999999999999988888888888766432211111                          22223345544 6


Q ss_pred             ccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHH
Q 008557          256 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  333 (561)
Q Consensus       256 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  333 (561)
                      ..+..|.|+||.|+.+|..++.++|+. .|.+++.+|.+|+||||.|+..|..+++++|+++|++.+.....+.+|.+
T Consensus       193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  193 ARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLD  269 (527)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCcc
Confidence            777779999999999999999999999 89999999999999999999999999999999999999888777776643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=173.63  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=92.4

Q ss_pred             hccCCCCCCcHHHHHHHhCcH----HHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHH---HHHHHhcCCCCccccC
Q 008557          152 LSKKNQEGETPLYVAAESGHA----LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLV---VKALVSKDPSTGFRTD  224 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~----~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~---v~~lL~~~~~~~~~~d  224 (561)
                      ++..+.++.++||.||+.|+.    +++++|++.  +...+..|.+|+||||+|+..|+..   +.++|...+++++.+|
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGD--GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhc--chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence            333444444455555555544    233333333  3333444445555555555544432   2344445555566666


Q ss_pred             -CCCCcHHHHHHhCCCHHHHHHHhc-CCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCC
Q 008557          225 -KKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE  296 (561)
Q Consensus       225 -~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~  296 (561)
                       ..|+||||+|+..|+.+++++|+. .+.++ +.+|..|.||||+|+..++.+++++|+. +|++++.++..|.
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence             478889999998899999999885 67666 7888899999999999999999999998 7899988888774

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=5.7e-21  Score=174.18  Aligned_cols=100  Identities=22%  Similarity=0.351  Sum_probs=89.3

Q ss_pred             ccCCCCCcHHHHHHhCCCHH---HHHHHhcCCCCcccccc-cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCC
Q 008557          222 RTDKKGQTALHMAVKGQNED---IVLELIRPDPSVLKLED-NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES  297 (561)
Q Consensus       222 ~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~n~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~T  297 (561)
                      .+|.+|+||||+|+..|+.+   ++++|++.|+++ +.+| ..|+||||+|+..|+.+++++|+...|++++.+|..|.|
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            35788999999999998874   688999999887 8887 489999999999999999999997568999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          298 PLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       298 pL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      |||+|+..++.+++++|+++|++..
T Consensus       129 pL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        129 PYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999998753

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=4.9e-19  Score=188.41  Aligned_cols=195  Identities=24%  Similarity=0.275  Sum_probs=139.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCcc---chhHhhccCCCCCCcHHHHHHH---hCcHHHHHHHHhcCCCCCCCc----C
Q 008557          121 DLQLHLAARAGNLSRVMEILQSCDAN---EAKDLLSKKNQEGETPLYVAAE---SGHALIVEEMLQHMNLETASI----P  190 (561)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~~~g~TpLh~Aa~---~g~~~iv~~LL~~~~~~~~~~----~  190 (561)
                      +.++..|...|.++....|+..+...   .....++.+...|+|.||.|..   .++.++++.||+..+ ..++.    .
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p-~lind~~~~e  180 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFP-KLINDIYTSE  180 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH-HHhhhhhhhH
Confidence            35566666666666665555443210   0113355555666666666665   344466666666521 11110    1


Q ss_pred             CCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc---------C--------------CCCCcHHHHHHhCCCHHHHHHHh
Q 008557          191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT---------D--------------KKGQTALHMAVKGQNEDIVLELI  247 (561)
Q Consensus       191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~---------d--------------~~g~tpLh~A~~~g~~~iv~~Ll  247 (561)
                      ...|.||||+|+.+.+...+.+|.+.+++++.+         |              .-|+.||-+||.-++.|++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            123666666666666666666666666555421         1              23778999999999999999999


Q ss_pred             cCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC--cccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID--VNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       248 ~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad--~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                      ++++|+ +.+|.+|||.||..+.+-..++..++|+ .|++  ...+|++|.|||.+|++.|..++.+.+++..
T Consensus       261 ~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  261 AHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             hcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            999998 9999999999999999999999999999 8999  8899999999999999999999999999983

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6.4e-20  Score=169.81  Aligned_cols=134  Identities=19%  Similarity=0.283  Sum_probs=89.1

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCc----HHHHHHHHhcCCCCCCCc
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH----ALIVEEMLQHMNLETASI  189 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~----~~iv~~LL~~~~~~~~~~  189 (561)
                      +.+|..|.||||+|++.|+.++++.|+........+..++.+|..|.||||+|+..|+    .+++++|+++  +.+++.
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~   92 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINA   92 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCC
Confidence            4568899999999999999999999875431111246688999999999999999998    4777777776  444444


Q ss_pred             CCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhc-CCCCcccccccCCchHHHHH
Q 008557          190 PARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIA  268 (561)
Q Consensus       190 ~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh~A  268 (561)
                      ++.                                ..|+||||+|+..++.+++++|++ .+.++ +..|..|+||||+|
T Consensus        93 ~~~--------------------------------~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A  139 (169)
T PHA02741         93 QEM--------------------------------LEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELA  139 (169)
T ss_pred             CCc--------------------------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHH
Confidence            432                                245555555555555555555554 24443 55555555555555


Q ss_pred             HHhCCHHHHHHHhh
Q 008557          269 IKKGRTQIVRCLLS  282 (561)
Q Consensus       269 a~~g~~~iv~~LL~  282 (561)
                      +..|+.+++++|++
T Consensus       140 ~~~~~~~iv~~L~~  153 (169)
T PHA02741        140 IDNEDVAMMQILRE  153 (169)
T ss_pred             HHCCCHHHHHHHHH
Confidence            55555555555554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=9.1e-20  Score=166.22  Aligned_cols=136  Identities=17%  Similarity=0.147  Sum_probs=96.6

Q ss_pred             HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC-----CCCCCcCCCCCCcHHHHHHHcCHHH---HHHHHhcCCCCcc
Q 008557          150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN-----LETASIPARNGYDSFHVAAKQGHLV---VKALVSKDPSTGF  221 (561)
Q Consensus       150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~-----~~~~~~~~~~g~tpLh~Aa~~g~~~---v~~lL~~~~~~~~  221 (561)
                      ...+.+|..|.||||+||+.|+.  ++++.....     .......|.+|.||||+|+..|+..   +.++|...+++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            34556667777777777777762  232222100     1112234667777777777777653   3455666667777


Q ss_pred             ccC-CCCCcHHHHHHhCCCHHHHHHHhcC-CCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcc
Q 008557          222 RTD-KKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN  289 (561)
Q Consensus       222 ~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n  289 (561)
                      .+| ..|+||||+|+..|+.+++++|+.. +.++ +.+|..|.||||+|+..|+.+++++|+. .|++.+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~-~ga~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRA-KGAQCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            777 4899999999999999999999974 6665 8889999999999999999999999998 787764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=3.9e-19  Score=155.57  Aligned_cols=141  Identities=23%  Similarity=0.248  Sum_probs=96.2

Q ss_pred             HHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHH
Q 008557          164 YVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV  243 (561)
Q Consensus       164 h~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  243 (561)
                      .+|+..+...-|+.||+. ....++.+|.+|+||||-|+.+||..++..|...++....+...|+||||-||+-++.+++
T Consensus        68 lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   68 LWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            344444444444444443 2333444444444444444444444444444444555566677888999999999999999


Q ss_pred             HHHhcCCCCcccccccCCchHHHHHHHhCCH-HHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRT-QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       244 ~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~-~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                      -.||++|+++ |++.....||||+||...+. ..+.+||...++++-.+++.+.||+++|.+.+
T Consensus       147 ~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  147 GRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999888 88888888999999886654 55677777688888888999999999988664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.2e-18  Score=173.55  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             hccCCCCCCc-HHHHHHHhCcHHHHHHHHhcCCCCCCCcC----CCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc-CC
Q 008557          152 LSKKNQEGET-PLYVAAESGHALIVEEMLQHMNLETASIP----ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT-DK  225 (561)
Q Consensus       152 ~~~~~~~g~T-pLh~Aa~~g~~~iv~~LL~~~~~~~~~~~----~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~-d~  225 (561)
                      +..+|..|.| |||.|+..|+.+++++|+++  |++++.+    +..|.||||+|+..|+.++.++|...|++++.. +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC
Confidence            4556777765 56666677899999999998  5666665    468999999999999999999999999999875 45


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      .|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++..+..   .   ..+..+.+|++++   
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~---  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD---N---EISNFYKHPKKIL---  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC---C---cccccccChhhhh---
Confidence            7999999999999999999999999988 9999999999999999999988765543   2   2567778898875   


Q ss_pred             CCHHHHHHHHHcCC
Q 008557          306 GNTELFSLLKEAGA  319 (561)
Q Consensus       306 ~~~~i~~~Ll~~ga  319 (561)
                      ++.+++++|+.+++
T Consensus       173 ~n~ei~~~Lish~v  186 (300)
T PHA02884        173 INFDILKILVSHFI  186 (300)
T ss_pred             ccHHHHHHHHHHHH
Confidence            47899999999988

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=4.8e-18  Score=169.13  Aligned_cols=154  Identities=12%  Similarity=-0.014  Sum_probs=130.3

Q ss_pred             CCCCCCC-hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC----CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc
Q 008557          115 SPGKRGD-LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK----NQEGETPLYVAAESGHALIVEEMLQHMNLETASI  189 (561)
Q Consensus       115 ~~~~~G~-T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~----~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~  189 (561)
                      ..|..|. ++||.|+..|+.++++.|+++|+      +++.+    +..|.||||+|+..|+.+++++|+++  +++++.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GA------diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~--GADVN~   98 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGA------DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY--GADVNR   98 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCC------CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcCc
Confidence            3566665 56777888899999999999965      36665    46899999999999999999999998  678887


Q ss_pred             C-CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHH
Q 008557          190 P-ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  268 (561)
Q Consensus       190 ~-~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  268 (561)
                      . +..|.||||+|+..|+.++.++|...+++++.+|..|.||||+|+..++.+++..+...      ..+..+.+|++++
T Consensus        99 ~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  172 (300)
T PHA02884         99 YAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL  172 (300)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh
Confidence            5 46799999999999999999999999999999999999999999999999888666532      2466788999976


Q ss_pred             HHhCCHHHHHHHhhcCCC
Q 008557          269 IKKGRTQIVRCLLSIEGI  286 (561)
Q Consensus       269 a~~g~~~iv~~LL~~~ga  286 (561)
                         ++.+++++|+. +++
T Consensus       173 ---~n~ei~~~Lis-h~v  186 (300)
T PHA02884        173 ---INFDILKILVS-HFI  186 (300)
T ss_pred             ---ccHHHHHHHHH-HHH
Confidence               57899999998 444

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.77  E-value=2.4e-19  Score=192.83  Aligned_cols=272  Identities=21%  Similarity=0.190  Sum_probs=192.0

Q ss_pred             HHHhhhccCCCCCCCCCCCCCCccccccc--ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCC
Q 008557           35 MEKQQSFNGESTDKPPSALGPMEKQQSFH--GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKN  112 (561)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~g~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~  112 (561)
                      ++.-.+.+-+.....++..|+.|.+-.+.  +++++.+|..+-+++..+...||......+......+..          
T Consensus       749 id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~vea----------  818 (2131)
T KOG4369|consen  749 IDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA----------  818 (2131)
T ss_pred             eccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhh----------
Confidence            33334444455566777888888666543  678888888888888888888886555544433322211          


Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (561)
Q Consensus       113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~  192 (561)
                        ..|+.++|+|-+||..|..++|+.||..+..      -..+|-...|||-+|..-|.+++++.||.++...+...-.+
T Consensus       819 --Qsdrtkdt~lSlacsggr~~vvelLl~~gan------kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSk  890 (2131)
T KOG4369|consen  819 --QSDRTKDTMLSLACSGGRTRVVELLLNAGAN------KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSK  890 (2131)
T ss_pred             --hcccccCceEEEecCCCcchHHHHHHHhhcc------ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccc
Confidence              3467788888888888888888888887543      34556677788888888888888888888743344444455


Q ss_pred             CCCcHHHHHHHcCHH----------------------------------HHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557          193 NGYDSFHVAAKQGHL----------------------------------VVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  238 (561)
Q Consensus       193 ~g~tpLh~Aa~~g~~----------------------------------~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g  238 (561)
                      -|.+||++|..+||.                                  +++.+|+...+....+-+.|-|||+-++..|
T Consensus       891 lgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgG  970 (2131)
T KOG4369|consen  891 LGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGG  970 (2131)
T ss_pred             cCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCC
Confidence            677788888888776                                  5555555555555556666666777666667


Q ss_pred             CHHHHHHHhcCCCCccccc--ccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          239 NEDIVLELIRPDPSVLKLE--DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       239 ~~~iv~~Ll~~~~~~~n~~--d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      ..|+-++|+..|+|. |..  -..-.|+|-+++..||...|..|+. ..+.+..+|++|+|+|.+|+..|+...+.+|++
T Consensus       971 yvdvg~~li~~gad~-nasPvp~T~dtalti~a~kGh~kfv~~lln-~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen  971 YVDVGNLLIAAGADT-NASPVPNTWDTALTIPANKGHTKFVPKLLN-GDATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             ccccchhhhhccccc-ccCCCCCcCCccceeecCCCchhhhHHhhC-CccceecccCCCCcccchhccCCccccchHHhh
Confidence            667767777666665 321  1223367777777777777777777 677788899999999999999999999999999


Q ss_pred             cCCcccccCC
Q 008557          317 AGAAHSKDHG  326 (561)
Q Consensus       317 ~ga~~~~~~~  326 (561)
                      ++++.+..++
T Consensus      1049 ~~ad~d~qdn 1058 (2131)
T KOG4369|consen 1049 SVADADQQDN 1058 (2131)
T ss_pred             cccChhhhhc
Confidence            9999765433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=7.6e-19  Score=189.03  Aligned_cols=228  Identities=23%  Similarity=0.280  Sum_probs=201.3

Q ss_pred             ccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhcc
Q 008557           75 GVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK  154 (561)
Q Consensus        75 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~  154 (561)
                      .+.+..++..||.+....+.             .+|+++..+|+.|.+||.+|+..||..+|+.|+++..+     +-..
T Consensus       758 ~t~LT~acaggh~e~vellv-------------~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~-----veaQ  819 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLV-------------VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-----VEAQ  819 (2131)
T ss_pred             cccccccccCccHHHHHHHH-------------HhcccccccccccchhhhhhcccCchHHHHHHHhhhhh-----hhhh
Confidence            47788888888765554322             57899999999999999999999999999999988542     2334


Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc--CCCCCcHHH
Q 008557          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT--DKKGQTALH  232 (561)
Q Consensus       155 ~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~--d~~g~tpLh  232 (561)
                      .|..+.|+|-+||..|..++|++||.+  +++-..++...+|||.+|...|...++.+|...|+.++.+  .+.|-+||.
T Consensus       820 sdrtkdt~lSlacsggr~~vvelLl~~--gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  820 SDRTKDTMLSLACSGGRTRVVELLLNA--GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM  897 (2131)
T ss_pred             cccccCceEEEecCCCcchHHHHHHHh--hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh
Confidence            578899999999999999999999998  6777778889999999999999999999999988777654  367899999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557          233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  312 (561)
Q Consensus       233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~  312 (561)
                      +|..+||.+.++.|++.|.++......+-+|+|-+|+-.|+.++|.+||. ..+++..+-+.|.|||+-++..|..|+-+
T Consensus       898 latmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGyvdvg~  976 (2131)
T KOG4369|consen  898 LATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVDVGN  976 (2131)
T ss_pred             hhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccccch
Confidence            99999999999999999998844456678899999999999999999999 78999999999999999999999999999


Q ss_pred             HHHHcCCcccc
Q 008557          313 LLKEAGAAHSK  323 (561)
Q Consensus       313 ~Ll~~ga~~~~  323 (561)
                      +|+.+|||.+.
T Consensus       977 ~li~~gad~na  987 (2131)
T KOG4369|consen  977 LLIAAGADTNA  987 (2131)
T ss_pred             hhhhccccccc
Confidence            99999999765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=5e-19  Score=166.40  Aligned_cols=152  Identities=29%  Similarity=0.409  Sum_probs=117.1

Q ss_pred             HhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHh
Q 008557          168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI  247 (561)
Q Consensus       168 ~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  247 (561)
                      +.|+.--|++-|+. ...+.+.-|..|.+|||+||+.||..+++.|...++.++..+....||||+|+.+||-++|+.|+
T Consensus         9 regna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            34444334444433 23455666667777777777777777777777777777777777789999999999999999999


Q ss_pred             cCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       248 ~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      +..+++ |..+..|+||||+||..|...|.+-|+. .|+.++..|++|.|||+.|.-.-...+.++--++|-.++
T Consensus        88 ~~kadv-navnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   88 SRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHhccc-chhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            998887 9999999999999999999999999999 899999999999999998864444444445555666654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=6.5e-18  Score=147.92  Aligned_cols=144  Identities=25%  Similarity=0.269  Sum_probs=125.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHH
Q 008557          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (561)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~A  201 (561)
                      -.+.+|+..+.+..|+.||+..+     ..+|.+|.+|.||||-|+++||.+||+.|+..  +++...+...|+||||-|
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~a-----n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSA  137 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKA-----NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSA  137 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcc-----ccccccccccccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhh
Confidence            45789999999999999999866     34999999999999999999999999999998  788899999999999999


Q ss_pred             HHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH-HHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          202 AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE-DIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       202 a~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~-~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      |+..+..|.-+|+..+++++.......||||+||...+. ..+++|+..........++.+.||+.+|-+.+
T Consensus       138 ckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  138 CKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999999999999999999999977665 45666665443333567788999999997765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=6.7e-18  Score=158.87  Aligned_cols=133  Identities=27%  Similarity=0.306  Sum_probs=120.7

Q ss_pred             HHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC
Q 008557          208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  287 (561)
Q Consensus       208 ~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad  287 (561)
                      .+...|.....+.+.-|..|.+|||+||+.|+..+|+.|+..|+.+ |..+....||||+|+.+|+-+||+.||+ ..+|
T Consensus        15 qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~-~kad   92 (448)
T KOG0195|consen   15 QVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKAD   92 (448)
T ss_pred             EEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHH-Hhcc
Confidence            4555666777777888999999999999999999999999999998 8889888999999999999999999999 7899


Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHHHHHhhh
Q 008557          288 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI  342 (561)
Q Consensus       288 ~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~~~~~~i  342 (561)
                      +|+.|..|+||||||+-.|...|++-|+..||.++..++++.+|.+..+....+.
T Consensus        93 vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~  147 (448)
T KOG0195|consen   93 VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNT  147 (448)
T ss_pred             cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHH
Confidence            9999999999999999999999999999999999999999999987766554443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=5.2e-16  Score=127.48  Aligned_cols=88  Identities=40%  Similarity=0.584  Sum_probs=75.8

Q ss_pred             HHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHH
Q 008557          231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  310 (561)
Q Consensus       231 Lh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i  310 (561)
                      ||+|++.|+.+++++|++.+.++ +.    |+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence            78999999999999999987665 33    8889999999999999999998 889999999999999999999999999


Q ss_pred             HHHHHHcCCccccc
Q 008557          311 FSLLKEAGAAHSKD  324 (561)
Q Consensus       311 ~~~Ll~~ga~~~~~  324 (561)
                      +++|+++|++++.+
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            99999999887653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2.6e-15  Score=130.23  Aligned_cols=90  Identities=40%  Similarity=0.652  Sum_probs=51.0

Q ss_pred             cCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       223 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      .|..|.||||.|+..++.+++++|++.++.. +..+..|.||+|+|+..++.+++++|+. .+.+++..|..|.||+++|
T Consensus        36 ~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          36 KDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLA  113 (126)
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence            3445555555555555555555555555433 4455555566666665555556655555 4555555555555666666


Q ss_pred             HHcCCHHHHHHH
Q 008557          303 EKLGNTELFSLL  314 (561)
Q Consensus       303 ~~~~~~~i~~~L  314 (561)
                      ...++.+++++|
T Consensus       114 ~~~~~~~~~~~L  125 (126)
T cd00204         114 AKNGHLEVVKLL  125 (126)
T ss_pred             HhcCCHHHHHHh
Confidence            555555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=3.1e-15  Score=129.75  Aligned_cols=125  Identities=34%  Similarity=0.551  Sum_probs=113.7

Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 008557          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHM  233 (561)
Q Consensus       154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~  233 (561)
                      ..|..|.||||+|+..|+.+++++|++.  +......+..|.||||.|+..++..+.++|...+...+..+..|.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            4578899999999999999999999998  44547788899999999999999999999888887777888999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHh
Q 008557          234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  281 (561)
Q Consensus       234 A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL  281 (561)
                      |+..++.+++++|++.+.+. +..|..|.||||.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999988766 788999999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=8.5e-14  Score=148.88  Aligned_cols=176  Identities=22%  Similarity=0.276  Sum_probs=143.4

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCC-------CCCCCcCCCCCCcHHHHHHHcC---H-HHHHHHHhcCCCCccc----c
Q 008557          159 GETPLYVAAESGHALIVEEMLQHMN-------LETASIPARNGYDSFHVAAKQG---H-LVVKALVSKDPSTGFR----T  223 (561)
Q Consensus       159 g~TpLh~Aa~~g~~~iv~~LL~~~~-------~~~~~~~~~~g~tpLh~Aa~~g---~-~~v~~lL~~~~~~~~~----~  223 (561)
                      .+.++..|...+..+....|+....       .-..+.+...|.|.||.|..+.   + ..+..||...|..++.    .
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            3478888888898888888877531       2345556778999999999853   3 3566667767655442    2


Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccc---------ccc--------------CCchHHHHHHHhCCHHHHHHH
Q 008557          224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL---------EDN--------------KGNTALHIAIKKGRTQIVRCL  280 (561)
Q Consensus       224 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~---------~d~--------------~G~TpLh~Aa~~g~~~iv~~L  280 (561)
                      ...|+||||+|+.+.+.++|++|++.|+|+ ++         .|.              .|..||-+||..++++|+++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            357999999999999999999999999987 32         121              477999999999999999999


Q ss_pred             hhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc--ccccCCCCCCHHHHHH
Q 008557          281 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA--HSKDHGKPPSATKQLK  336 (561)
Q Consensus       281 L~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~--~~~~~~~~~~~~~~l~  336 (561)
                      ++ +|+|+|++|..|+|.||..+..-..++.++++++|++  ....|+.+-||.....
T Consensus       260 l~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  260 LA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             Hh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH
Confidence            99 8999999999999999999999999999999999999  7777888888865544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=2.6e-15  Score=123.24  Aligned_cols=64  Identities=44%  Similarity=0.618  Sum_probs=54.4

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCccccc
Q 008557          227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN  292 (561)
Q Consensus       227 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d  292 (561)
                      |+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.+|+.+++++|++ .|+++|.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEIVKLLLE-HGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHHHHHHHH-TTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC
Confidence            778999999999999999999988887 8888899999999999999999999998 688888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.8e-13  Score=131.60  Aligned_cols=132  Identities=33%  Similarity=0.415  Sum_probs=118.9

Q ss_pred             CCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCC-----HHHHHHHhcCCC--Ccccccc
Q 008557          186 TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-----EDIVLELIRPDP--SVLKLED  258 (561)
Q Consensus       186 ~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~n~~d  258 (561)
                      .....+..+.+++|.++..+...+..++...+.+++..|..|.||||+|+..++     .++++.|++.++  +..+.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            334456668889999998888888777777777778889999999999999999     999999999999  6768889


Q ss_pred             cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          259 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       259 ~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                      ..|+||||+|+..|+.+++++|++ .|++++..|..|.|+++.|+..++.++++.+.+.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999 89999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=5.5e-13  Score=128.16  Aligned_cols=128  Identities=30%  Similarity=0.409  Sum_probs=106.4

Q ss_pred             hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCH-----HHHHHHHhcCCC---Ccccc
Q 008557          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH-----LVVKALVSKDPS---TGFRT  223 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~-----~~v~~lL~~~~~---~~~~~  223 (561)
                      ....+..+.+++|.|+..+..+++++++..  +.+++..+.+|.||||+|+..|+     ..+.++|...++   .....
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            445566678888888888888888888887  55668888888888888888887     666666666666   66667


Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhh
Q 008557          224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  282 (561)
Q Consensus       224 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~  282 (561)
                      |..|+||||+|+..|+.++++.|++.++++ +..+..|.|+||.|+..++.++++.++.
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHh
Confidence            999999999999999999999999998887 7788999999999999999999999988

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=8.1e-13  Score=104.06  Aligned_cols=100  Identities=25%  Similarity=0.278  Sum_probs=85.3

Q ss_pred             cHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCH
Q 008557          229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  308 (561)
Q Consensus       229 tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~  308 (561)
                      --+.|++++|..+-|+.....+-++ |..- .|+||||+|+-.|+.+++++|+. .|++++.+|+.|-|||--|+-.||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n~~~-ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-NEIY-GGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-HHHh-CCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhH
Confidence            3567889999999999988888665 4332 88999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHHHHcCCcccccCCCCCCH
Q 008557          309 ELFSLLKEAGAAHSKDHGKPPSA  331 (561)
Q Consensus       309 ~i~~~Ll~~ga~~~~~~~~~~~~  331 (561)
                      +++++|++.||+.......+.+.
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~  103 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTAL  103 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhH
Confidence            99999999999987766555543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=3.9e-13  Score=99.84  Aligned_cols=56  Identities=39%  Similarity=0.661  Sum_probs=32.1

Q ss_pred             HhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       246 Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      ||+.++..++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            5677755559999999999999999999999999996 8999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.35  E-value=3.7e-12  Score=100.39  Aligned_cols=102  Identities=25%  Similarity=0.267  Sum_probs=79.5

Q ss_pred             HHHHHHcCHH-HHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHH
Q 008557          198 FHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  276 (561)
Q Consensus       198 Lh~Aa~~g~~-~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~i  276 (561)
                      +.+++++|.. +++....+. -+++. -..|++|||+|+..|..+++++|+..|+++ +.+|+.|-|||-.|+..||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g-~nVn~-~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEG-LNVNE-IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcc-ccHHH-HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHH
Confidence            4566666665 334444433 33322 247899999999999999999999999987 8899999999999999999999


Q ss_pred             HHHHhhcCCCCcccccCCCCCHHHHHH
Q 008557          277 VRCLLSIEGIDVNSLNKAGESPLDVAE  303 (561)
Q Consensus       277 v~~LL~~~gad~n~~d~~G~TpL~~A~  303 (561)
                      |++||+ .|+|-.....+|.+.+..+.
T Consensus        83 VklLL~-~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   83 VKLLLQ-NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHH-cCcccceeCCCchhHHhhcc
Confidence            999998 89998888888887766543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.34  E-value=4.4e-12  Score=141.51  Aligned_cols=106  Identities=22%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ++|+.|+..|+....++|...+++++..|..|+||||+|+.+|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            3577888888888888888888888888888888888888888888888888888887 888888888888888888888


Q ss_pred             HHHHHhhcC-------CCCcccccCCCCCHHHHHH
Q 008557          276 IVRCLLSIE-------GIDVNSLNKAGESPLDVAE  303 (561)
Q Consensus       276 iv~~LL~~~-------gad~n~~d~~G~TpL~~A~  303 (561)
                      ++++|++ +       |++.+..+..|.+|+..+.
T Consensus       163 iv~~Ll~-~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSR-HSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHh-CCCcccccCCCCCccccCCCCccchhh
Confidence            8888887 5       7777777777777765554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.3e-12  Score=94.17  Aligned_cols=54  Identities=39%  Similarity=0.601  Sum_probs=24.7

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHh
Q 008557          227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  281 (561)
Q Consensus       227 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL  281 (561)
                      |+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345555555555555555555554443 444555555555555555555555543

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=9.1e-12  Score=117.86  Aligned_cols=121  Identities=18%  Similarity=0.198  Sum_probs=97.9

Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      .||..++..|+.....-|+..-..++.+|..|.|+|..|+..|+.++|++||+.|+|+...++..+.||||.|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            45655655555543333333344456778899999999999999999999999999987778888999999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      +.++||+ .|+.....|.-|+|+-.+|+--|+.+++.++-.+
T Consensus        94 vcrllld-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   94 VCRLLLD-AGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHHHh-ccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999998 8999999999999999999999999888876443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=9.5e-12  Score=138.85  Aligned_cols=99  Identities=31%  Similarity=0.389  Sum_probs=90.8

Q ss_pred             cHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCH
Q 008557          229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  308 (561)
Q Consensus       229 tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~  308 (561)
                      +.|+.|+..|+.++++.|++.|+++ |.+|.+|+||||+|+..|+.+++++|++ .|+|+|.+|..|.||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            4689999999999999999999987 9999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCcccccCCCCC
Q 008557          309 ELFSLLKEA-------GAAHSKDHGKPP  329 (561)
Q Consensus       309 ~i~~~Ll~~-------ga~~~~~~~~~~  329 (561)
                      +++++|+++       |++.......+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~  189 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGK  189 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCC
Confidence            999999999       777655544333

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.29  E-value=5.9e-12  Score=92.86  Aligned_cols=54  Identities=39%  Similarity=0.668  Sum_probs=46.3

Q ss_pred             CchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557          261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  315 (561)
Q Consensus       261 G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll  315 (561)
                      |+||||+|+..|+.+++++|++ .|+|+|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999 69999999999999999999999999999985

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.27  E-value=3.3e-11  Score=114.11  Aligned_cols=121  Identities=19%  Similarity=0.157  Sum_probs=105.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      -..||.-++..|+.+....||..      ...+|..|..|.|||..|+..|+.++|++||+.+.+.+ ..++..++||||
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~------vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN-~~qhg~~YTpLm   84 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST------VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN-DKQHGTLYTPLM   84 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH------hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC-cccccccccHHH
Confidence            35799999999999999999986      45689999999999999999999999999999943222 335677899999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHh
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI  247 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  247 (561)
                      +|+..|+..+.++|.+.|+.....+.-|+|+-.+|+.-|+.++|..+=
T Consensus        85 FAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999998889999999999999999998887664

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.25  E-value=4.6e-12  Score=94.04  Aligned_cols=55  Identities=29%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             HhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHH
Q 008557          213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  268 (561)
Q Consensus       213 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  268 (561)
                      |..++.+++..|..|+||||+||.+|+.+++++|++.+.++ +.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            44455788888999999999999999999999999888887 99999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=3.1e-11  Score=122.58  Aligned_cols=123  Identities=26%  Similarity=0.283  Sum_probs=89.6

Q ss_pred             HHHHHhcCCCCccccCCCCCcHHH---HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCC
Q 008557          209 VKALVSKDPSTGFRTDKKGQTALH---MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  285 (561)
Q Consensus       209 v~~lL~~~~~~~~~~d~~g~tpLh---~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~g  285 (561)
                      .+..|.+.+..-..+..-..+||-   -|+..|-+|+|+-++..-.|. ...+.+|-||||-|+..||.+||++|++ .|
T Consensus       529 ~rt~LRk~gser~a~GRvrfnPLaLLLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~-~g  606 (752)
T KOG0515|consen  529 KRTNLRKAGSERMAHGRVRFNPLALLLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIE-FG  606 (752)
T ss_pred             hhhhhccCCCccccccceecchHHHHHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHh-cC
Confidence            344455544432222222234443   477888899998888776665 7778889999999999999999999998 79


Q ss_pred             CCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc-cCCCCCCHHH
Q 008557          286 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK-DHGKPPSATK  333 (561)
Q Consensus       286 ad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~-~~~~~~~~~~  333 (561)
                      +|||+.|.+|+||||.|+.+++..+++.|++.|+.+-. ......++.+
T Consensus       607 anVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  607 ANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAE  655 (752)
T ss_pred             CcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhh
Confidence            99999999999999999999999999999999887533 3344444443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=1.1e-10  Score=118.76  Aligned_cols=124  Identities=23%  Similarity=0.251  Sum_probs=102.2

Q ss_pred             CCCCcHH---HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHH
Q 008557          192 RNGYDSF---HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  268 (561)
Q Consensus       192 ~~g~tpL---h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  268 (561)
                      +-...||   .-|+..|.++++.-....-.++...+..|-|+||-|+..||.+||++|++.|+++ |..|.+||||||.|
T Consensus       545 RvrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCA  623 (752)
T KOG0515|consen  545 RVRFNPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCA  623 (752)
T ss_pred             ceecchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhh
Confidence            3344554   4578888888887777777777778899999999999999999999999999998 99999999999999


Q ss_pred             HHhCCHHHHHHHhhcCCCCccccc-CCCCCHHHHHHH--cCCHHHHHHHHHc
Q 008557          269 IKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEK--LGNTELFSLLKEA  317 (561)
Q Consensus       269 a~~g~~~iv~~LL~~~gad~n~~d-~~G~TpL~~A~~--~~~~~i~~~Ll~~  317 (561)
                      +..++..+++.|++ .|+.+-+.. .++.||.+-...  .|..++.++|...
T Consensus       624 ASCNnv~~ckqLVe-~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  624 ASCNNVPMCKQLVE-SGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhcCchHHHHHHHh-ccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            99999999999999 777776554 688898876654  3777888888653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.73  E-value=3.3e-08  Score=101.46  Aligned_cols=118  Identities=22%  Similarity=0.329  Sum_probs=97.5

Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCC-CcccccccCCchHHHHHHHhCCHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP-SVLKLEDNKGNTALHIAIKKGRTQI  276 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~-~~~n~~d~~G~TpLh~Aa~~g~~~i  276 (561)
                      +.-|+..++..-..-....+.....++.+.+|.||+|++.|+-++|+|+|++++ .++++.|..|.|+||-|+..++-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            445555555433333334444555678889999999999999999999999986 4568889999999999999999999


Q ss_pred             HHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          277 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       277 v~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      .++|++ .|+.+...|..|.||-.-|.+.|++++..+|-.
T Consensus       950 c~~lvd-agasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVD-AGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHh-cchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999 899999999999999999999999999888754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.71  E-value=1.1e-08  Score=103.06  Aligned_cols=95  Identities=24%  Similarity=0.368  Sum_probs=88.4

Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHH
Q 008557          224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  303 (561)
Q Consensus       224 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~  303 (561)
                      +.++..++.+|++.|....++.+.-.+.++ +..|.+.+|+||+||..|+.+++++|++..++|++.+|..|+|||+-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            345667999999999999999999888887 9999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCC
Q 008557          304 KLGNTELFSLLKEAGA  319 (561)
Q Consensus       304 ~~~~~~i~~~Ll~~ga  319 (561)
                      ..+|.+++++|-++--
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999987654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.65  E-value=8.1e-08  Score=97.45  Aligned_cols=94  Identities=31%  Similarity=0.405  Sum_probs=82.4

Q ss_pred             ccCCCCCc------HHHHHHhCCCHHHHHHHhcCCCCcccccc-cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCC
Q 008557          222 RTDKKGQT------ALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA  294 (561)
Q Consensus       222 ~~d~~g~t------pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~  294 (561)
                      .+|.+|.|      -||..++.|+.+..-.||..|++. |..+ ..|+||||.|++.|+..-+++|+- +|+|+++.|.+
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~  199 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSS  199 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCC
Confidence            34556655      589999999999999999999998 6555 579999999999999999999998 89999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Q 008557          295 GESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       295 G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      |.||+++|...||.++.+-|++.
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHH
Confidence            99999999999999888876653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.60  E-value=2.6e-08  Score=106.48  Aligned_cols=87  Identities=32%  Similarity=0.405  Sum_probs=56.7

Q ss_pred             CCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCccccccc-CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCC
Q 008557          216 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA  294 (561)
Q Consensus       216 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~  294 (561)
                      ++..++..|..|+|+||+|+..+..+++++||++|.++ +.+|. .|+||||-|..+|+.+++.+||. +|+...++|++
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL~i~Dke  118 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSLRIKDKE  118 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHh-cCCceEEeccc
Confidence            33445556666677777766666666777777666665 44554 56677777777777777766666 56666666777


Q ss_pred             CCCHHHHHHH
Q 008557          295 GESPLDVAEK  304 (561)
Q Consensus       295 G~TpL~~A~~  304 (561)
                      |..||+..++
T Consensus       119 glsplq~~~r  128 (1267)
T KOG0783|consen  119 GLSPLQFLSR  128 (1267)
T ss_pred             CCCHHHHHhh
Confidence            7777666655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.56  E-value=1.3e-07  Score=97.66  Aligned_cols=92  Identities=25%  Similarity=0.360  Sum_probs=79.6

Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCCc---ccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          230 ALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       230 pLh~A~~~g~~~iv~~Ll~~~~~~---~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                      -|.-|+...+...+-+||.+|...   -...+.+|+|+||+|+..|+..+.++|+. +|+|+-++|.+|+|+|.||...|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc
Confidence            466677777888888999887432   13446688999999999999999999998 89999999999999999999999


Q ss_pred             CHHHHHHHHHcCCccc
Q 008557          307 NTELFSLLKEAGAAHS  322 (561)
Q Consensus       307 ~~~i~~~Ll~~ga~~~  322 (561)
                      ..+++++|+++|....
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999998653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.55  E-value=8.1e-08  Score=61.07  Aligned_cols=29  Identities=52%  Similarity=0.841  Sum_probs=18.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHhhcCCCCcc
Q 008557          260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN  289 (561)
Q Consensus       260 ~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n  289 (561)
                      +|+||||+|+..|+.+++++|++ .|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCC
Confidence            36666666666666666666666 566665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.54  E-value=1.7e-07  Score=96.40  Aligned_cols=117  Identities=24%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHH
Q 008557          124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAK  203 (561)
Q Consensus       124 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~  203 (561)
                      +..|+..+++--+.+.-..++      .+-.++.+..|.||+|+..|+-|+|+++|+++..+.++..|..|.|+||-|+.
T Consensus       870 il~av~~~D~~klqE~h~~gg------~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGG------SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCC------ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            445555555444444443432      36677888888888888888888888888885555444445555555555555


Q ss_pred             cCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHH
Q 008557          204 QGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  246 (561)
Q Consensus       204 ~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  246 (561)
                      .++..+..+|...++.....|..|.||-.-|-+.|+.+...||
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             hcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHH
Confidence            5554444555444444444455555555555555555544444

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.54  E-value=9.9e-08  Score=62.32  Aligned_cols=33  Identities=42%  Similarity=0.741  Sum_probs=25.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccC
Q 008557          260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  293 (561)
Q Consensus       260 ~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~  293 (561)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            47788888888888888888887 7888877764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.46  E-value=1.2e-07  Score=95.94  Aligned_cols=94  Identities=23%  Similarity=0.218  Sum_probs=82.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      .++..++++|++.|++..++.+.-.+      .+++..|.+.+|+||+||..|+.+++++|++. ...++..+|+-|+||
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g------~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~-~kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQG------MDLETKDYDDRTALHVAAAEGHVEVVKFLLNA-CKVDPDPKDRWGRTP  576 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhc------ccccccccccchhheeecccCceeHHHHHHHH-HcCCCChhhccCCCc
Confidence            45667899999999999999988773      55899999999999999999999999999998 467888889999999


Q ss_pred             HHHHHHcCHHHHHHHHhcCCC
Q 008557          198 FHVAAKQGHLVVKALVSKDPS  218 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~  218 (561)
                      |.-|..-+|.++.++|.+...
T Consensus       577 lDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHhc
Confidence            999999999999888887654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.45  E-value=1.1e-07  Score=102.00  Aligned_cols=95  Identities=27%  Similarity=0.331  Sum_probs=84.7

Q ss_pred             HHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       242 iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~-~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      +-.++-+.+.+..|..|..|+|+||+|+..+..+++++||+ +|+|++.+|. .|.||||-|...|+.+++-+|+.+|+.
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            34455566777789999999999999999999999999999 7999999995 799999999999999999999999999


Q ss_pred             ccccCCCCCCHHHHHHH
Q 008557          321 HSKDHGKPPSATKQLKQ  337 (561)
Q Consensus       321 ~~~~~~~~~~~~~~l~~  337 (561)
                      ....++.+..|.+.+-+
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            88888888888776654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.45  E-value=5.3e-07  Score=92.94  Aligned_cols=86  Identities=27%  Similarity=0.350  Sum_probs=60.1

Q ss_pred             HHHHHHHcCHH--HHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCH
Q 008557          197 SFHVAAKQGHL--VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  274 (561)
Q Consensus       197 pLh~Aa~~g~~--~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~  274 (561)
                      |||+++.....  ...+++.+....++.+|..|+||||+|+.-|+.+.++.|+.+++++ ..+|++|++|||-|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCH
Confidence            47777766544  3333344445556667777777777777777777777777777776 77777777777777777777


Q ss_pred             HHHHHHhhc
Q 008557          275 QIVRCLLSI  283 (561)
Q Consensus       275 ~iv~~LL~~  283 (561)
                      +++..+|.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            777777663

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.37  E-value=0.00012  Score=80.03  Aligned_cols=137  Identities=18%  Similarity=0.187  Sum_probs=93.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      ..+.--...|+..|+...|+..++.....  .-++|..|.-|.++|++|..+.+.|++++|+++  ....       ..+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~--~lninc~d~lGr~al~iai~nenle~~eLLl~~--~~~~-------gdA   91 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVS--KLNINCRDPLGRLALHIAIDNENLELQELLLDT--SSEE-------GDA   91 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhcccc--ccchhccChHhhhceecccccccHHHHHHHhcC--cccc-------chH
Confidence            33445577899999999999999876642  456889999999999999999999999999998  2111       468


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  277 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv  277 (561)
                      |.+|+..|...+++++...+......   +.                    .+... ...-..+-|||.+||..++.||+
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~---~~--------------------~~d~~-~~~ft~ditPliLAAh~NnyEil  147 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYL---ER--------------------SGDAN-SPHFTPDITPLMLAAHLNNFEIL  147 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchh---cc--------------------ccccC-cccCCCCccHHHHHHHhcchHHH
Confidence            88888888888888887776554211   11                    00000 11223445677777777777777


Q ss_pred             HHHhhcCCCCccc
Q 008557          278 RCLLSIEGIDVNS  290 (561)
Q Consensus       278 ~~LL~~~gad~n~  290 (561)
                      ++||. .|+.+-.
T Consensus       148 ~~Ll~-kg~~i~~  159 (822)
T KOG3609|consen  148 QCLLT-RGHCIPI  159 (822)
T ss_pred             HHHHH-cCCCCCC
Confidence            77776 5555443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.34  E-value=9e-07  Score=91.25  Aligned_cols=112  Identities=19%  Similarity=0.174  Sum_probs=88.4

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  240 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~  240 (561)
                      -|||+++.....+-...++.......+...|..|.||||+|+..||.....+|...+++...+|..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            56999999888776665544324556778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc
Q 008557          241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  283 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  283 (561)
                      +++..++.+......           .-...+.+.++..|.+.
T Consensus       102 q~i~~vlr~~~~q~~-----------~~~~~~~p~ll~~l~~~  133 (560)
T KOG0522|consen  102 QIITEVLRHLKYQAW-----------EKWERRLPRLLAKLSEM  133 (560)
T ss_pred             HHHHHHHHHhHHHHH-----------HHHHhcchHHHHHHHhC
Confidence            999988875322100           01234667778777773

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.29  E-value=2.8e-06  Score=86.57  Aligned_cols=95  Identities=21%  Similarity=0.291  Sum_probs=79.4

Q ss_pred             hccCCCCCCcH------HHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC
Q 008557          152 LSKKNQEGETP------LYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD  224 (561)
Q Consensus       152 ~~~~~~~g~Tp------Lh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d  224 (561)
                      ...+|.+|.|.      ||..++.|+.+..-.||..  |++++..+ ..|.||||.|++.|+..-.+||.-+|+++...|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            34566677665      9999999999998888888  55555554 458999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhc
Q 008557          225 KKGQTALHMAVKGQNEDIVLELIR  248 (561)
Q Consensus       225 ~~g~tpLh~A~~~g~~~iv~~Ll~  248 (561)
                      .+|.||+.+|-..||-++.+.|++
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHHH
Confidence            999999999999999888776665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.26  E-value=1.1e-06  Score=57.24  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=28.7

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLED  258 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d  258 (561)
                      +|+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5899999999999999999999999887 7665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.26  E-value=1.3e-06  Score=55.53  Aligned_cols=29  Identities=38%  Similarity=0.583  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          294 AGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       294 ~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      +|+||||+|+..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999875

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.19  E-value=1.6e-06  Score=96.97  Aligned_cols=91  Identities=35%  Similarity=0.475  Sum_probs=82.3

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557          225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  304 (561)
Q Consensus       225 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~  304 (561)
                      ..|.|+||.|+..+..-++++|++.++++ |..|..|+||||.+...|+...+..|++ +|++.++.|.+|.+|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence            45789999999999999999999999996 9999999999999999999999999999 899999999999999999988


Q ss_pred             cCCHHHHHHHHHc
Q 008557          305 LGNTELFSLLKEA  317 (561)
Q Consensus       305 ~~~~~i~~~Ll~~  317 (561)
                      ..+.+++-++.-.
T Consensus       732 ~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  732 AANADIVLLLRLA  744 (785)
T ss_pred             hccccHHHHHhhh
Confidence            8777777666554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.15  E-value=5e-06  Score=86.23  Aligned_cols=88  Identities=27%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             HHHHHHHcCHHHHHHHHhcCCCCc----cccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          197 SFHVAAKQGHLVVKALVSKDPSTG----FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       197 pLh~Aa~~g~~~v~~lL~~~~~~~----~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      -|.-|....+.....+|+.++...    ...+.+|+|+||+||..|++.+.++|+-+|.++ ..+|.+|+|+|.||-..|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            355555555555555555554422    234567788888888888888888888888877 788888888888888888


Q ss_pred             CHHHHHHHhhcCCC
Q 008557          273 RTQIVRCLLSIEGI  286 (561)
Q Consensus       273 ~~~iv~~LL~~~ga  286 (561)
                      ..+++..||. +|.
T Consensus       706 sqec~d~llq-~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQ-YGC  718 (749)
T ss_pred             cHHHHHHHHH-cCC
Confidence            8888888888 565

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.13  E-value=4.1e-06  Score=93.13  Aligned_cols=128  Identities=23%  Similarity=0.261  Sum_probs=85.8

Q ss_pred             CcCCCCCCcHHHHHHHcCHHHHHHHHhcC-CCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557          188 SIPARNGYDSFHVAAKQGHLVVKALVSKD-PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH  266 (561)
Q Consensus       188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh  266 (561)
                      ......|++-+|+++..++.-+.+-+.+. +......|.+|...+|+ |..++.+..-+|+.....-++.+|..|+||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            33445577777777777776444444433 44444556777777777 44556677666666655556888888888888


Q ss_pred             HHHHhCCHHHHHHHhhcCCCC------cccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          267 IAIKKGRTQIVRCLLSIEGID------VNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad------~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      +|+..|+..++..|+. .|++      ++..+-.|.|+-++|..+|+..+..+|-++
T Consensus       647 wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888888888888876 4544      233344688888888888888777776654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.06  E-value=3.5e-06  Score=94.31  Aligned_cols=78  Identities=29%  Similarity=0.405  Sum_probs=58.2

Q ss_pred             CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHHHH
Q 008557          260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQT  338 (561)
Q Consensus       260 ~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~~~  338 (561)
                      .|.|+||.|+..|..-++++||+ .|+++|..|..|+||+|.+...|+...+.+|++.||++...+..+..+.....+.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            56778888888887777777777 6777888888888888888888888877777778877777666666665554433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.98  E-value=2.5e-05  Score=85.28  Aligned_cols=126  Identities=25%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhC
Q 008557          158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG  237 (561)
Q Consensus       158 ~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~  237 (561)
                      .+.--...|+..|+.-.|+..++.....                               .-.++..|.-|+++||.|+.+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~-------------------------------~lninc~d~lGr~al~iai~n   72 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVS-------------------------------KLNINCRDPLGRLALHIAIDN   72 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhcccc-------------------------------ccchhccChHhhhceeccccc
Confidence            3444556677777777777777762220                               112445677788888888888


Q ss_pred             CCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC---------cccccCCCCCHHHHHHHcCCH
Q 008557          238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID---------VNSLNKAGESPLDVAEKLGNT  308 (561)
Q Consensus       238 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad---------~n~~d~~G~TpL~~A~~~~~~  308 (561)
                      .|.+++++|++..-..        ..+|-+|+..|..++|+.++.+....         -...-..+-||+.+|+..+++
T Consensus        73 enle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nny  144 (822)
T KOG3609|consen   73 ENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNF  144 (822)
T ss_pred             ccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcch
Confidence            8888888888764322        35777788888888888888742111         112234578999999999999


Q ss_pred             HHHHHHHHcCCccc
Q 008557          309 ELFSLLKEAGAAHS  322 (561)
Q Consensus       309 ~i~~~Ll~~ga~~~  322 (561)
                      ||+++|+++|+.+.
T Consensus       145 Eil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  145 EILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999753

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.91  E-value=2.6e-05  Score=70.40  Aligned_cols=66  Identities=27%  Similarity=0.283  Sum_probs=54.8

Q ss_pred             ccccccCCchHHHHHHHhCCHHHHHHHhhcCC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG-IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       254 ~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~g-ad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      +|.+|..|+|||+.|+..|+.+.+.+|+. +| +++...|..|.+++.+|.+.|..++++.|.+.-.+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            48888888888888888888888888888 66 78888888888888888888888888888876433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.82  E-value=2.7e-05  Score=86.85  Aligned_cols=154  Identities=25%  Similarity=0.193  Sum_probs=116.4

Q ss_pred             hhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcH
Q 008557          151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTA  230 (561)
Q Consensus       151 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tp  230 (561)
                      .....+..|.|-||+++..++...++.+++- .+......|.+|.-.+|+++..|......+....+..++.+|..|+||
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcc
Confidence            3556677899999999999999999999985 244556678888888999777777777777777888888999999999


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCCc-----ccccccCCchHHHHHHHhCCHHHHHHHhhc------CCCCcccccCCCCCHH
Q 008557          231 LHMAVKGQNEDIVLELIRPDPSV-----LKLEDNKGNTALHIAIKKGRTQIVRCLLSI------EGIDVNSLNKAGESPL  299 (561)
Q Consensus       231 Lh~A~~~g~~~iv~~Ll~~~~~~-----~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~------~gad~n~~d~~G~TpL  299 (561)
                      ||+|+.+|+..++..|++.+++.     .+..+..|.|+--+|..+|+..+..+|-+.      ........+..+.+|.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~~~~~~~~~s~~~~~  724 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLSNLELADPNLSADSEE  724 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHhhccccccccCCCchh
Confidence            99999999999999999776543     133445789999999999998888777552      0111222234455666


Q ss_pred             HHHHHc
Q 008557          300 DVAEKL  305 (561)
Q Consensus       300 ~~A~~~  305 (561)
                      .-|.+.
T Consensus       725 ~~~~~t  730 (975)
T KOG0520|consen  725 DKAEKT  730 (975)
T ss_pred             hhhhhc
Confidence            555543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.77  E-value=6.9e-05  Score=67.76  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 008557          111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH  181 (561)
Q Consensus       111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~  181 (561)
                      .++|.+|..|+|+|+.|+..|+.+.|.+|+.++.     +.+...|..|.+++.+|=..|+.++|+.|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-----a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-----AFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCc-----ccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4667777788888888888888888888887754     33667777777888888777888777777775

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.57  E-value=0.0002  Score=71.12  Aligned_cols=67  Identities=22%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCH
Q 008557          230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP  298 (561)
Q Consensus       230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~Tp  298 (561)
                      -|..||+.|..+.|++|++.|.++ |.+|...+.||.+|+..||.++|++||+ .|+-...-.-+|...
T Consensus        39 elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcchh
Confidence            456666666666666666665555 6666666666666666666666666666 555333222344433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.53  E-value=0.00017  Score=71.59  Aligned_cols=62  Identities=34%  Similarity=0.498  Sum_probs=57.7

Q ss_pred             chHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc
Q 008557          262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD  324 (561)
Q Consensus       262 ~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~  324 (561)
                      .--|..||+.|..+.|+.|++ .|+++|.+|....+||.+|...||.+++++|++.||-...+
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            456899999999999999999 89999999999999999999999999999999999976554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.39  E-value=0.0085  Score=62.02  Aligned_cols=72  Identities=26%  Similarity=0.334  Sum_probs=54.9

Q ss_pred             HHHHHHHhcCCCCc-----ccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 008557          240 EDIVLELIRPDPSV-----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  314 (561)
Q Consensus       240 ~~iv~~Ll~~~~~~-----~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~L  314 (561)
                      .+.+++|.+++.+.     ....|..--|+||+|+..|..++|.+||+ .|+|+..+|..|.||.+++.   +.++-..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            45666676665443     12234456799999999999999999999 78999999999999999987   45554444


Q ss_pred             H
Q 008557          315 K  315 (561)
Q Consensus       315 l  315 (561)
                      +
T Consensus       480 ~  480 (591)
T KOG2505|consen  480 I  480 (591)
T ss_pred             H
Confidence            4

>smart00248 ANK ankyrin repeats

Probab=96.16  E-value=0.0074  Score=36.37  Aligned_cols=22  Identities=41%  Similarity=0.751  Sum_probs=10.8

Q ss_pred             CchHHHHHHHhCCHHHHHHHhh
Q 008557          261 GNTALHIAIKKGRTQIVRCLLS  282 (561)
Q Consensus       261 G~TpLh~Aa~~g~~~iv~~LL~  282 (561)
                      |.||||+|+..++.++++.|++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~   23 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLD   23 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            3445555544455555554444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.41  E-value=0.028  Score=33.67  Aligned_cols=28  Identities=39%  Similarity=0.620  Sum_probs=25.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          294 AGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       294 ~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      .|.||+|+|+..++.++++.|+++|.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999998865

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.71  E-value=0.032  Score=57.90  Aligned_cols=42  Identities=24%  Similarity=0.183  Sum_probs=26.5

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHH
Q 008557          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA  202 (561)
Q Consensus       159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa  202 (561)
                      -.|+||+|+..|..++|.+||+.  +.++...|..|.||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Lee--g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEE--GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHh--cCCchhcccCCCCcccccc
Confidence            45667777777766676666665  3555666666666655554

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.41  E-value=0.31  Score=45.89  Aligned_cols=93  Identities=22%  Similarity=0.333  Sum_probs=66.0

Q ss_pred             CcHHHHHHhCCCHHHHHHHhcCC----CCcccccccCCchHHHHHHH--hCCHHHHHHHhhcCCCCcccc---cCCCCCH
Q 008557          228 QTALHMAVKGQNEDIVLELIRPD----PSVLKLEDNKGNTALHIAIK--KGRTQIVRCLLSIEGIDVNSL---NKAGESP  298 (561)
Q Consensus       228 ~tpLh~A~~~g~~~iv~~Ll~~~----~~~~n~~d~~G~TpLh~Aa~--~g~~~iv~~LL~~~gad~n~~---d~~G~Tp  298 (561)
                      .+++.+|..++..+++.+|+..-    .+++.+.-  +.--+-++..  ..+..++++.|+..=+++|.+   -+.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            57888999899999999998753    22222211  2223333332  345678888888433567753   5689999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccc
Q 008557          299 LDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       299 L~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      |+-|.+.++.+++.+|+++||-..
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcccc
Confidence            999999999999999999999543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.45  E-value=2.5  Score=38.78  Aligned_cols=140  Identities=20%  Similarity=0.120  Sum_probs=94.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      -+..|..|+..+-+.+++..=+.         +...-...++-.-.||+..+.|+|+|+-+.     ..+  .+-.+-+-
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~---------L~~~~~~~q~LFElAC~~qkydiV~WI~qn-----L~i--~~~~~iFd  109 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKED---------LENERYLNQELFELACEEQKYDIVKWIGQN-----LHI--YNPEDIFD  109 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHH---------hhcchhHHHHHHHHHHHHccccHHHHHhhc-----cCC--CCchhhhh
Confidence            35678889999999988877654         221124567888899999999999999443     222  22335677


Q ss_pred             HHHHcCHHHHH----HHHhcCCCCccccCCC--CCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC
Q 008557          200 VAAKQGHLVVK----ALVSKDPSTGFRTDKK--GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  273 (561)
Q Consensus       200 ~Aa~~g~~~v~----~lL~~~~~~~~~~d~~--g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~  273 (561)
                      .|....+...-    .++..........|..  =..-|..|+..|-.+.+-..++.|.++ +      +++|..|+..++
T Consensus       110 IA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynh  182 (192)
T PF03158_consen  110 IAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNH  182 (192)
T ss_pred             hhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhH
Confidence            88887776331    2222221111001100  013467899999999999999998876 2      289999999999


Q ss_pred             HHHHHHHhh
Q 008557          274 TQIVRCLLS  282 (561)
Q Consensus       274 ~~iv~~LL~  282 (561)
                      ..|+.+++.
T Consensus       183 RkIL~yfi~  191 (192)
T PF03158_consen  183 RKILDYFIR  191 (192)
T ss_pred             HHHHHHhhc
Confidence            999998875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.19  E-value=2.1  Score=40.49  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHH
Q 008557          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV  200 (561)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~  200 (561)
                      +-.|--|+..-|.+.+..++....             +-.++|.+|...+..+++.+||....-.   .+|--.      
T Consensus       154 ~isledAV~AsN~~~i~~~VtdKk-------------dA~~Am~~si~~~K~dva~~lls~f~ft---~~dv~~------  211 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDKK-------------DAHQAMWLSIGNAKEDVALYLLSKFNFT---KQDVAS------  211 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcchH-------------HHHHHHHHHhcccHHHHHHHHHhhccee---cchhhh------
Confidence            445788999999888888886522             2348899999999999999999873211   111111      


Q ss_pred             HHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccc---cccCCchHHHHHHHhCCHHHH
Q 008557          201 AAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL---EDNKGNTALHIAIKKGRTQIV  277 (561)
Q Consensus       201 Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~---~d~~G~TpLh~Aa~~g~~~iv  277 (561)
                       +..+-.++..+|...++                    +..++++.+++|-..+|.   .-+.|.|-|.-|.++++.+++
T Consensus       212 -~~~~~ydieY~LS~h~a--------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi  270 (284)
T PF06128_consen  212 -MEKELYDIEYLLSEHSA--------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMI  270 (284)
T ss_pred             -cCcchhhHHHHHhhcCC--------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHH
Confidence             11133355556655544                    356778888777443343   345788999999999999999


Q ss_pred             HHHhhcCCC
Q 008557          278 RCLLSIEGI  286 (561)
Q Consensus       278 ~~LL~~~ga  286 (561)
                      .+||+ +|+
T Consensus       271 ~~Llk-~GA  278 (284)
T PF06128_consen  271 AFLLK-YGA  278 (284)
T ss_pred             HHHHH-cCc
Confidence            99998 676

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.72  E-value=2.2  Score=33.35  Aligned_cols=48  Identities=19%  Similarity=0.177  Sum_probs=40.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 008557          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH  181 (561)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~  181 (561)
                      ..-|..|+..|+.|+++.+++....             ....+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4568999999999999999975321             14679999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=81.49  E-value=8.9  Score=35.28  Aligned_cols=137  Identities=17%  Similarity=0.133  Sum_probs=90.4

Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHH
Q 008557          162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED  241 (561)
Q Consensus       162 pLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  241 (561)
                      -|..|+..+...|.+..-+...+.     -...++.+-.||+..+.+++.++...-...     +-.+.+-+|....+.+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCCC-----Cchhhhhhhhhccchh
Confidence            466788889888888776652111     134567888999999998888885543322     2346677888888776


Q ss_pred             HHH----HHhcCCCCccccccc--CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557          242 IVL----ELIRPDPSVLKLEDN--KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  315 (561)
Q Consensus       242 iv~----~Ll~~~~~~~n~~d~--~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll  315 (561)
                      ...    +++++.... ...|.  --.--|..|+.+|-...+...|+ .|-+++.      ++|..|++.++..|...++
T Consensus       119 LyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            522    122221110 00010  01134678999999999998898 6766653      7999999999999998876


Q ss_pred             H
Q 008557          316 E  316 (561)
Q Consensus       316 ~  316 (561)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.22  E-value=3.4  Score=32.30  Aligned_cols=49  Identities=27%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             CcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcC
Q 008557          228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  284 (561)
Q Consensus       228 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~  284 (561)
                      ..-+..|+.+|+.|+++.+++.+ .+    +   ...+..|+..-+-+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            34678899999999999888654 11    1   45788899888889999998853

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	561
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-15
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-12
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-09
1uoh_A	226	Human Gankyrin Length = 226		3e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		7e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		7e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		8e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		8e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		8e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF 221
           L  AAE+G+   V+++++  N    +    +G    H AAK+GH  +VK L+SK      
Sbjct: 8   LIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
           + D  G+T LH A K  +++IV  LI     V   +D+ G T LH A K+G  +IV+ L+
Sbjct: 66  K-DSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           S +G DVN+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 124 S-KGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
           A +  N+D V +LI     V    D+ G T LH A K+G  +IV+ L+S +G DVN+ + 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDS 68
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
            G +PL  A K G+ E+  LL   GA  ++KD  G+ P
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 106

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
           NG    H+AA+ GHL V  L+ +  +     DK G+T LH+A +  + ++V  L+     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           V   +D  G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G+ E+  
Sbjct: 61  V-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 313 LLKEAGA 319
           LL EAGA
Sbjct: 119 LLLEAGA 125

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 12/208 (5%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           + K   ++  K     LH AAR G+ + V  +L+    N A   L+     G TPL++AA
Sbjct: 68  QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE----NNANPNLA--TTAGHTPLHIAA 121
Query: 168 ESGHALIVEEMLQHMNLETA-SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK 226
             GH   VE +L  +  E + +   + G+   HVAAK G + V  L+ +  +      K 
Sbjct: 122 REGH---VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G T LH+AV   N DIV +L+ P           G T LHIA K+ + ++ R LL   G 
Sbjct: 179 GLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG- 236
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLL 314
             N+ +  G +PL +A + G+ E+ +LL
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALL 264

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPST 219
           L  AAE+G+   V+++L++     AS    +G    H AA+ GH  +VK L+SK  DP+ 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 220 GFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
               D  G+T LH A +  +++IV  L+    DP+    +D+ G T LH A + G  +IV
Sbjct: 66  ---KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIV 119
Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           + LLS +G D N+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 120 KLLLS-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 234 AVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
           A +  N+D V +L+    DP+     D+ G T LH A + G  +IV+ LLS +G D N+ 
Sbjct: 11  AAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAK 66
Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
           +  G +PL  A + G+ E+  LL   GA  ++KD  G+ P
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 106

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPST 219
           L  AAE+G+   V+++L+  N    +    +G    H+AA+ GH  VVK L+S+  DP+ 
Sbjct: 8   LIEAAENGNKDRVKDLLE--NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 220 GFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
               D  G+T LH+A +  ++++V  L+    DP+    +D+ G T LH+A + G  ++V
Sbjct: 66  ---KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV 119
Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           + LLS +G D N+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 120 KLLLS-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
           A +  N+D V +L+     V    D+ G T LH+A + G  ++V+ LLS +G D N+ + 
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
            G++PL +A + G+ E+  LL   GA  ++KD  GK P
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
           ++GY   H+AA++GHL +  ++ K  +     DK G T LH+A +  + +IV  L++   
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
            V   +D  G T LH+A ++G  +IV  LL   G DVN+ +K G++P D+A   GN ++ 
Sbjct: 93  DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIDNGNEDIA 150
Query: 312 SLLKEAG 318
            +L++A 
Sbjct: 151 EVLQKAA 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
           ++GY   H+AA++GHL +  ++ K  +     DK G T LH+A +  + +IV  L++   
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
            V   +D  G T LH+A ++G  +IV  LL   G DVN+ +K G++P D+A + G+ ++ 
Sbjct: 93  DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIREGHEDIA 150
Query: 312 SLLKEAG 318
            +L++A 
Sbjct: 151 EVLQKAA 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF 221
           L  AAE+G+   V+++++  N    +    +G    H AA+ GH  VVK L+SK      
Sbjct: 8   LIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
           + D  G+T LH A +  ++++V  LI     V   +D+ G T LH A + G  ++V+ L+
Sbjct: 66  K-DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           S +G DVN+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 124 S-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
           A +  N+D V +LI     V    D+ G T LH A + G  ++V+ L+S +G DVN+ + 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDS 68
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 329
            G +PL  A + G+ E+  LL   GA  ++KD  G+ P
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 106

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 12/163 (7%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKAL 212
           +Q+G +PL+VAA  G A ++  +L+H     A+  ARN   +   H+A +QGH  VVK L
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272
           +  +     + D  G T L  A  G + ++V  L++   S+    +NKGNTALH A+ + 
Sbjct: 139 LDSNAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEK 196
Query: 273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
              +V  LL + G  V  LNK   + +D AE+  N+++  LL+
Sbjct: 197 HVFVVE-LLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 213 VSKDPSTGFR---TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN------T 263
           ++K P++G     T + G + LH+A      D++       P +LK   N G        
Sbjct: 69  LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLI-------PLLLKHGANAGARNADQAV 121
Query: 264 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
            LH+A ++G  Q+V+CLL       N  + +G +PL  A   G+ EL +LL + GA+
Sbjct: 122 PLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
           ++GY   H+AA++GHL +  ++ K  +     DK G T LH+A +  + +IV  L++   
Sbjct: 45  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
            V   +D  G T LH+A ++G  +IV  LL   G DVN+ +K G++  D++   GN +L 
Sbjct: 105 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 312 SLLK 315
            +L+
Sbjct: 163 EILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
           +GY   H+AA  GHL +  ++ K+ +    +D  G T LH+A    + +IV  L++    
Sbjct: 46  DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           V    DN G+T LH+A K G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 106 V-NAYDNDGHTPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLK 315
           +L+
Sbjct: 164 ILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           TD  G T LH+A    + +IV E++  + + +   D  G T LH+A   G  +IV  LL 
Sbjct: 43  TDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 342
             G DVN+ +  G +PL +A K G+ E+  +L +        HG   +A  +  +T  DI
Sbjct: 102 -HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 152
Query: 343 KHD 345
             D
Sbjct: 153 SID 155

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
           AARAG    V  ++ +  D N A       +  G TPL++AA SGH  IVE +L+H    
Sbjct: 21  AARAGQDDEVRILMANGADVNAA-------DNTGTTPLHLAAYSGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
            A + A +  GY   H+AA  GHL +  ++ K+ +     D  G T LH+A K    +IV
Sbjct: 70  GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
             L++    V   +D  G TA  I+I  G   +   L
Sbjct: 130 EVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D  G T LH+A    + +IV  L++    V    D  G T LH+A   G  +IV  LL  
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 343
            G DVN+++  G +PL +A K G  E+  +L +        HG   +A  +  +T  DI 
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK--------HGADVNAQDKFGKTAFDIS 153
Query: 344 HD 345
            D
Sbjct: 154 ID 155

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
           A + AR+  G+   H+AA  GHL +  ++ K+ +     D  G T LH+A +  + +IV 
Sbjct: 38  ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV- 96
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304
           E++  + + +   D+ G T LH+A K+G  +IV  LL   G DVN+ +K G++  D++  
Sbjct: 97  EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISID 155
Query: 305 LGNTELFSLLKE 316
            GN +L  +L++
Sbjct: 156 NGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 12/125 (9%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           G   LHLAA+ G+L  ++E+L    A+     ++  +  G TPL++AA++GH  IVE +L
Sbjct: 47  GHTPLHLAAKTGHL-EIVEVLLKYGAD-----VNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG 237
           +H     A + A++  G+   H+AA  GHL +  ++ K  +     DK G+TA  +++  
Sbjct: 101 KH----GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 238 QNEDI 242
            NED+
Sbjct: 157 GNEDL 161

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
           G+   H+AAK GHL +  ++ K  +     D  G T LH+A    + +IV  L++    V
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
              +D +G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  +
Sbjct: 107 -NAKDYEGFTPLHLAAYDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 314 LKE 316
           L++
Sbjct: 165 LQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 47/192 (24%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
           AARAG    V  IL +  A+     ++  + +G TPL++AA  GH  IVE +L+H     
Sbjct: 21  AARAGQDDEV-RILMANGAD-----VNAHDDQGSTPLHLAAWIGHPEIVEVLLKH----G 70
Query: 187 ASIPAR--NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
           A + AR  +G+   H+AA  GHL +  ++ K     +  D   Q A              
Sbjct: 71  ADVNARDTDGWTPLHLAADNGHLEIVEVLLK-----YGADVNAQDAY------------- 112
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 304
                           G T LH+A  +G  +IV  LL   G DVN+ +K G++  D++  
Sbjct: 113 ----------------GLTPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISID 155
Query: 305 LGNTELFSLLKE 316
            GN +L  +L++
Sbjct: 156 NGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D +G T LH+A    + +IV  L++    V    D  G T LH+A   G  +IV  LL  
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 343
            G DVN+ +  G +PL +A   G+ E+  +L +        HG   +A  +  +T  DI 
Sbjct: 103 -GADVNAQDAYGLTPLHLAADRGHLEIVEVLLK--------HGADVNAQDKFGKTAFDIS 153
Query: 344 HD 345
            D
Sbjct: 154 ID 155

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
           G+   H+AA  GHL +  ++ K+ +     D  G T LH+A    + +IV  L++    V
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
              +DN G T LH+A  +G  +IV  LL   G DVN+ +K G++  D++   GN +L  +
Sbjct: 107 NAKDDN-GITPLHLAANRGHLEIVEVLLKY-GADVNAQDKFGKTAFDISINNGNEDLAEI 164
Query: 314 LKE 316
           L++
Sbjct: 165 LQK 167

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
           +K  +  D S   RTD+  +TALH A    + +IV  L++    V   +D+ G + LHIA
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
              GR +IV+ LL ++G  VN++N+ G +PL  A      E+  +L E GA   +KDH
Sbjct: 81  ASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
           G    H+AA+ GHL +  ++ K+ +     D  G T LH+A K  + +IV  L++    V
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
              +D  G+T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  +
Sbjct: 107 -NADDTIGSTPLHLAADTGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 314 LK 315
           L+
Sbjct: 165 LQ 166

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
           +K  +  D S   RTD+  +TALH A    + +IV  L++    V   +D+ G + LHIA
Sbjct: 22  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
              GR +IV+ LL  +G  VN++N+ G +PL  A      E+  +L E GA   +KDH
Sbjct: 81  ASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+T LH+A +  + ++V  L+     V   +D  G T LH+A + G  ++V+ LL   G 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DVN+ +K G +PL +A + G+ E+  LL EAGA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
           +K  +  D S   RTD+  +TALH A    + +IV  L++    V   +D+ G + LHIA
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80
Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
              G  +IV+ LL ++G  VN++N+ G +PL  A      E+  +L E GA   +KDH
Sbjct: 81  ASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 9/200 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S        LL +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
           N+     P  +G+  FH+A   G+L VVK+L  +       +   +G T LH+AV  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
           ++   LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL 
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 301 VAEKLGNTELFSLLKEAGAA 320
            A   G+ +   LL E   A
Sbjct: 180 HALAEGHGDAAVLLVEKYGA 199

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPS 252
           G+   H+AA  GHL +  ++ K+ +     D  G T LH+A  +G  E  V+E++  + +
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLE--VVEVLLKNGA 104
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
            +   D+ G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
           +L++
Sbjct: 164 ILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
           +G    H+AA +GHL +  ++ K  +     DK G T LH+A    + +IV E++  + +
Sbjct: 46  SGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIV-EVLLKNGA 104
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
            +   D  G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
           +L++
Sbjct: 164 ILQK 167

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 9/200 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S        LL +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
           N+     P  +G+  FH+A   G+L VVK+L  +       +   +G T LH+AV  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
           ++   LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL 
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 301 VAEKLGNTELFSLLKEAGAA 320
            A   G+ +   LL E   A
Sbjct: 180 HALAEGHGDAAVLLVEKYGA 199

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
           G    H+    GHL +  ++ K  +    +DK G T LH+A    + +IV  L++    V
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
             + D +G T LH+A + G  +IV  LL   G DVN+ +K G++  D++   GN +L  +
Sbjct: 107 NAM-DYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 314 LKE 316
           L++
Sbjct: 165 LQK 167

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPST 219
           TPL+ A   GH  +V +++++      S+    G    H+AA+ GH  +V  L++K    
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYG--ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 220 GFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
               D+ G T L  A  +  + D    L+  + SV   +    NTALH A+  G T ++ 
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
            LL   G +V++ N  GES LD+A++  N  + + L+EA  A   D
Sbjct: 195 LLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 12/204 (5%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S        LL +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
           N+     P  +G+  FH+A   G+L VVK+L  +       +   +G T LH+AV  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL- 299
           ++   LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL 
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 300 -DVAEKLGNTELFSLLKEAGAAHS 322
             +AE  G+  +  L+++ GA + 
Sbjct: 180 HALAEGHGDAAVL-LVEKYGAEYD 202

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 127 AARAGNLSRV-MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNL 184
           AARAG    V + I    D N         +  G TPL++AA SGH  IVE +L+H  ++
Sbjct: 21  AARAGQDDEVRILIANGADVNAV-------DNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 185 ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 244
           + A +    G+   H+AA  GHL +  ++ K  +     D  G T LH+A    + +IV 
Sbjct: 74  DAADV---YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 245 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
            L++    V   +D  G TA  I+I  G   + +
Sbjct: 131 VLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
           G    H+AA  GHL +  ++ K  +     D  G T LH+A    + +IV  L++    V
Sbjct: 47  GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310
               D  G+T LH+A  +G  +IV  LL   G DVN+ +K G++  D++   GN +L
Sbjct: 107 NAF-DMTGSTPLHLAADEGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 45/190 (23%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
           AARAG    V  ++ +  DAN         +  G TPL++AA  GH  IVE +L      
Sbjct: 9   AARAGQDDEVRILMANGADAN-------AYDHYGRTPLHMAAAVGHLEIVEVLL------ 55
Query: 186 TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 245
                 RNG D            V A+           D  G T LH+A    + +IV  
Sbjct: 56  ------RNGAD------------VNAV-----------DTNGTTPLHLAASLGHLEIVEV 86
Query: 246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
           L++    V   +D  G T L++A   G  +IV  LL   G DVN+ +K G++  D++  +
Sbjct: 87  LLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDI 144
Query: 306 GNTELFSLLK 315
           GN +L  +L+
Sbjct: 145 GNEDLAEILQ 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D  G+T LHMA    + +IV  L+R    V  ++ N G T LH+A   G  +IV  LL  
Sbjct: 32  DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKY 90
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 343
            G DVN+ +  G +PL +A   G+ E+  +L +        HG   +A  +  +T  DI 
Sbjct: 91  -GADVNAKDATGITPLYLAAYWGHLEIVEVLLK--------HGADVNAQDKFGKTAFDIS 141
Query: 344 HDVQSQ 349
            D+ ++
Sbjct: 142 IDIGNE 147

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 182 MNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
           +N E AS     G+   H+AA  GHL +  ++ K+ +     D  G T L +A    + +
Sbjct: 40  VNAEDAS-----GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301
           IV E++  + + +   D +G+T LH+A   G  +IV  LL   G DVN+ +K G++  D+
Sbjct: 95  IV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDI 152
Query: 302 AEKLGNTELFSLLKE 316
           +   GN +L  +L++
Sbjct: 153 SIDNGNEDLAEILQK 167

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284
           K G T LH A K  + + V +L+     V       GNT LH+A K G  +IV+ LL+ +
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           G DVN+ +K G +P  +A+K G+ E+  LL   GA
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VV 209
           L+  K+ EG T L++AA+ GH  +V+ +L +  ++  +     G+     A +  H+ +V
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLV 127
Query: 210 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           K L+SK      R D +    LH A      DI  E++      L   +  G++ LHIA 
Sbjct: 128 KLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
           ++ R   V   LS +  DV   NK GE+PL  A    N++++S L+
Sbjct: 186 RENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL--NSQVWSALQ 228

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
           +G    H+AA  GHL +  ++ K  +     D  G T LH+A    + +IV  L++    
Sbjct: 46  SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           V  + D  G+T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 106 VNAV-DTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
           +L++
Sbjct: 164 ILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
           +G    H+AA  GHL +  ++ K  +     D  G T LH+A    + +IV  L++    
Sbjct: 46  SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           V  + D  G+T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 106 VNAV-DTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 313 LLKE 316
           +L++
Sbjct: 164 ILQK 167

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+KG T LH+A    + +IV  L++    V    DN G+T LH+A   G  +IV  LL  
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           TD  G T LH+A      +IV E++  + + +   D+ G T LH+A   G  +IV  LL 
Sbjct: 35  TDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             G DVN+ ++AG +PL +A   G  E+  +L + GA
Sbjct: 94  -HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN----GYDSFHVAAKQ 204
           K L ++ +Q+  T L+ A  +GH  IVE +LQ        +P  +    G+   H+AA  
Sbjct: 31  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAASA 84
Query: 205 GH-LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI----RPDPSVLKLEDN 259
           G   +VKAL+ K        ++ G T LH A      +I + L+     PD      +D+
Sbjct: 85  GRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-----KDH 138
Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              TA+H A  KG  +++  LL  +    N  +  G +PL +A      E   LL   GA
Sbjct: 139 YEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 320 A 320
           +
Sbjct: 198 S 198

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
           ++A  G+ E++  E I  D S+    D    TALH A   G T+IV  LL + G+ VN  
Sbjct: 13  NLAYSGKLEELK-ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK 70
Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGA 319
           + AG SPL +A   G  E+   L   GA
Sbjct: 71  DDAGWSPLHIAASAGRDEIVKALLGKGA 98

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+ G T LH+A +  + +IV  L++    V   EDN G T LH+A  +G  +IV  LL  
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+  
Sbjct: 67  DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
              +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+  
Sbjct: 67  DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
              +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
              +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
              +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
              +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
           AARAG    V  ++    AN A   ++ K++ G TPLY+A   GH  IVE +L++     
Sbjct: 21  AARAGQDDEVRILM----ANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
           A + A +  G+   H+AA  GHL +  ++ K  +     DK G+TA  +++   NED+
Sbjct: 71  ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+  L  A  GQ++++   ++  + + +  +D  G T L++A   G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DVN+++  G +PL +A  +G+ E+  +L + GA
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+  L     GQ++++   ++  + + +   D+ G T LH+A K+G  +IV  LL   G 
Sbjct: 15  GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DVN+ +  G +PL +A  +G+ E+  +L E GA
Sbjct: 72  DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
           DPS   L +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N +
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 310 LFSLLKEAGAA 320
           +   L E+GAA
Sbjct: 118 VCKFLVESGAA 128

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
           DPS   L +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N +
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 310 LFSLLKEAGAA 320
           +   L E+GAA
Sbjct: 118 VCKFLVESGAA 128

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 127 AARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
           A RAG    V  ++ +  D N   D        G TPL++AA+ GH  IVE +L+H    
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDD-------AGVTPLHLAAKRGHLEIVEVLLKH---- 69
Query: 186 TASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
            A + AR+  G    H+AA  GHL +  ++ +  +     DK G+TA  +++   NED+
Sbjct: 70  GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+  L     GQ++++   ++  + + +   D+ G T LH+A K+G  +IV  LL   G 
Sbjct: 15  GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DVN+ +  G +PL +A  +G+ E+  +L E GA
Sbjct: 72  DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+  L     GQ++++   ++  + + +   D+ G T LH+A K+G  +IV  LL   G 
Sbjct: 15  GKKLLEATRAGQDDEV--RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGA 71
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DVN+ +  G +PL +A  +G+ E+  +L E GA
Sbjct: 72  DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           RG+  LH+A+  G++  V  +LQ+      KD        G TPL+ A   GH  +VE +
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKD------HAGWTPLHEACNHGHLKVVELL 62
Query: 179 LQHMNLETASIPARNGYDS---FHVAAKQGHL-VVKALVS 214
           LQH  L   +     GY +    H AAK GH+ +VK L+S
Sbjct: 63  LQHKALVNTT-----GYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 223 TDKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
           T+ +G+T LH+A +KG    +  E +  + S   ++D+ G T LH A   G  ++V  LL
Sbjct: 6   TNHRGETLLHIASIKGDIPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 322
             + + VN+     +SPL  A K G+ ++  LL   GA+ +
Sbjct: 64  QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           + GD  LHLA      +  ME+++    + A   L+ +N   +TPL++A  +    I E 
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 178 MLQHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGF------RTDKKGQT 229
           +L            R+  G    H+A +QG L    ++++  +T         T+  G T
Sbjct: 64  LLG----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
            LH+A       IV  L+     V   E   G TALH+A+      +V  LL   G DVN
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178
Query: 290 SLNKAGESP 298
            +   G SP
Sbjct: 179 RVTYQGYSP 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           GD  LHLA      +  ME+++    + A   L+ +N   +TPL++A  +    I E +L
Sbjct: 5   GDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGF------RTDKKGQTAL 231
                       R+  G    H+A +QG L    ++++  +T         T+  G T L
Sbjct: 63  G----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
           H+A       IV  L+     V   E   G TALH+A+      +V  LL   G DVN +
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRV 177
Query: 292 NKAGESP 298
              G SP
Sbjct: 178 TYQGYSP 184

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 45/206 (21%)
Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
           S     D QL  AA+AG++  V ++      N  +D+  +++    TPL+ AA      +
Sbjct: 5   SGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSV 59
Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMA 234
           VE +LQH            G D   V AK                    DK G   LH A
Sbjct: 60  VEYLLQH------------GAD---VHAK--------------------DKGGLVPLHNA 84
Query: 235 VK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
              G  E  V EL+    +V+ + D    T LH A  KG+ +I + LL   G D    N+
Sbjct: 85  CSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNR 141
Query: 294 AGESPLDVAEKLGNTELFSLLKEAGA 319
            G +PLD+  K G+T++  LL+   A
Sbjct: 142 DGNTPLDLV-KDGDTDIQDLLRGDAA 166

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
            D QL  AA+AG++  V ++      N  +D+  +++    TPL+ AA      +VE +L
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 62
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK-GQ 238
           QH            G D   V AK                    DK G   LH A   G 
Sbjct: 63  QH------------GAD---VHAK--------------------DKGGLVPLHNACSYGH 87
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
            E  V EL+    +V+ + D    T LH A  KG+ +I + LL   G D    N+ G +P
Sbjct: 88  YE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTP 144
Query: 299 LDVAEKLGNTELFSLLKEAGA 319
           LD+  K G+T++  LL+   A
Sbjct: 145 LDLV-KDGDTDIQDLLRGDAA 164

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
            D QL  AA+AG++  V ++      N  +D+  +++    TPL+ AA      +VE +L
Sbjct: 12  ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 66
Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK-GQ 238
           QH            G D   V AK                    DK G   LH A   G 
Sbjct: 67  QH------------GAD---VHAK--------------------DKGGLVPLHNACSYGH 91
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
            E  V EL+    +V+ + D    T LH A  KG+ +I + LL   G D    N+ G +P
Sbjct: 92  YE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTP 148
Query: 299 LDVAEKLGNTELFSLLKEAGA 319
           LD+  K G+T++  LL+   A
Sbjct: 149 LDLV-KDGDTDIQDLLRGDAA 168

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           DK G T LH+A    + +IV  L++    V  + D  G T LH+    G  +IV  LL  
Sbjct: 44  DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY--DSFHVAAKQGHLVVK 210
           ++ +++G+TPL++A   G+   V  ++         +   N       H+A       V 
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 211 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLE--DNKGNTALHI 267
            L+    ++    D+ GQTA H+A + ++   +  L+    P  L LE  +  G TALH+
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 319
           A+     + V+ LL   G D+++++ K+G SPL  A +  +  +  LL + GA
Sbjct: 123 AVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 198 FHVAAKQGHL--VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 255
            H AAK+G+L  + + L ++    G   DK G TAL+ A  G ++DIV E +   P++  
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 256 LEDNK-GNTALHIAIKKGRTQIVRCLLS 282
            + NK G+TALH A  KG   IV+ LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318
           DVN+ +K G++  D++   GN +L  +L++A 
Sbjct: 60  DVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 40/209 (19%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E   N + P   G + LH AA  G L  + E L S  A+     +   N EG+TPL +A 
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLD-IAEYLISQGAH-----VGAVNSEGDTPLDIAE 147
Query: 168 ESGHALIVEEML--QHMNLETASI--------PARNGYDSFHVAAKQGHLVVKALVSKDP 217
           E     +++  +  Q +++E A           AR   +S H+                 
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI----------------- 190
Query: 218 STGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 276
               R  K G TALH+A  KG  E  VL+L+      + ++D  G T LH A   G+ + 
Sbjct: 191 -NDVRHAKSGGTALHVAAAKGYTE--VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
Query: 277 VRCLLSIEGI-DVNSLNKAGESPLDVAEK 304
            R L  +E + D+ ++NK G++  DVA++
Sbjct: 248 CRIL--VENLCDMEAVNKVGQTAFDVADE 274

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
           A+      + + LL     D+++    G +PL +A +L 
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 194 GYDSFHVAAKQGH-----LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 248
           G    H+AA+ GH     ++++A VS+D  T     K  +T LHMA    + +IV  L++
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-----KVDRTPLHMAASEGHANIVEVLLK 88
Query: 249 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 308
               V   +D    TALH A +    ++V  L+   G DV++ +K  ++  D++   GN 
Sbjct: 89  HGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNE 146
Query: 309 ELFSLLK 315
           +L  +L+
Sbjct: 147 DLAEILQ 153

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           G+  L  A  GQ++++   ++  + + +  +D  G+T LH+A + G  ++V+ LL   G 
Sbjct: 7   GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLK 315
           DVN+ +K G++  D++   GN +L  +L+
Sbjct: 64  DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
           A+      + + L+     D+++    G +PL +A +L 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---PDPSV 253
           S H  A QG ++  A   +  +    TD++G T L M      +  V+E +     DP +
Sbjct: 22  SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQL 80
Query: 254 LKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           L     KG  +AL +A  KG T IV+ LL   G+DVN  +  G +PL  A    + +   
Sbjct: 81  L----GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVK 135
Query: 313 LLKEAGA 319
           +L E+GA
Sbjct: 136 MLLESGA 142

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D +G TAL  AVK     I  +L+    +V   +D  G T L  +I  G +++   LL  
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE- 122
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            G +VN  N  GE+PL VA K G +E+   L E GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 39  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
           A+      + + L+     D+++    G +PL +A +L
Sbjct: 98  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---PDPSV 253
           S H  A QG ++  A   +  +    TD++G T L M      +  V+E +     DP +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQL 64
Query: 254 LKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           L     KG  +AL +A  KG T IV+ LL   G+DVN  +  G +PL  A    + +   
Sbjct: 65  L----GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 313 LLKEAGA 319
           +L E+GA
Sbjct: 120 MLLESGA 126

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
           A+      + + L+     D+++    G +PL +A +L
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 211 ALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           AL   DPS     T +  +  L  A +  NE+ ++ L+ P        D + +T LH+A 
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
              R +IV+ LL   G DV++ +K G  PL  A   G+ E+  LL + GA 
Sbjct: 67  GYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D  G T LH+A    + +IV E++  + + +    N G T LH+A      +IV  LL  
Sbjct: 44  DYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK- 101
Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 18/195 (9%)
Query: 92  SFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL 151
           +FR +  R L ++         +     G+  LH +    N   V ++L   D+   K  
Sbjct: 91  TFRAMSARLLDYV--------VNIADSNGNTALHYSVSHANFPVVQQLL---DSGVCK-- 137
Query: 152 LSKKNQEGETPLYVAAESGHAL--IVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHL- 207
           + K+N+ G +P+ + A +       +E +LQ   L   +  A + G  +  +A   G + 
Sbjct: 138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD 197
Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
           VVKAL++ +     + D  G TAL  A +  +++I   L+      + L D  G+TAL +
Sbjct: 198 VVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256
Query: 268 AIKKGRTQIVRCLLS 282
           A+  G+++I   L S
Sbjct: 257 ALDAGQSEIASMLYS 271

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 256
           S H  A QG ++  A   +  +    TD++G T L M      +  V+E +  + +  +L
Sbjct: 4   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL-MWAAAHGQIAVVEFLLQNGADPQL 62
Query: 257 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
                 +AL +A  KG T IV+ LL   G+DVN  +  G +PL  A    + +   +L E
Sbjct: 63  LGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 317 AGA 319
           +GA
Sbjct: 122 SGA 124

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
           G  G+  LH+AA   NL   M +L         + ++ +  EG+T L++A  + +  +V 
Sbjct: 34  GAMGETALHIAALYDNLEAAM-VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK 236
            +L       AS+ AR     FH   +  +L+                  G+  L  A  
Sbjct: 93  ALLA----RGASVSARATGSVFHY--RPHNLIYY----------------GEHPLSFAAC 130
Query: 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI----KKGRTQIVRCLLSIEGID-VNSL 291
             +E+IV  LI     + + +D+ GNT LHI I    K    Q+   LLS +G D + SL
Sbjct: 131 VGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189
Query: 292 ----NKAGESPLDVAEKLGNTELFSLLKE 316
               N  G +P  +A   GN  +F  L +
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 18/181 (9%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A   G+LS V  +L+    + A+  ++    +  TPL+ A  SG    V  +LQH  
Sbjct: 40  LHEACLGGHLSCVKILLK----HGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQH-- 91
Query: 184 LETASI-PARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
              AS+ P  +     H AA++GH+  V +L++   +   +    G T L++A + Q   
Sbjct: 92  --GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRA 148
Query: 242 IVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
            V +L+    S   +   KG ++ LH A+ +  ++ + CLL   G D  + N  G+ P++
Sbjct: 149 CVKKLLE---SGADVNQGKGQDSPLH-AVARTASEELACLLMDFGADTQAKNAEGKRPVE 204
Query: 301 V 301
           +
Sbjct: 205 L 205

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 43/188 (22%)
Query: 120 GD-LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           GD L +H  A  G L ++ E L+  D     +L++K ++ G TPL  A+  G        
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGD-----NLVNKPDERGFTPLIWASAFGE------- 48
Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
                +ET       G D  H+ AK+                       ++AL +A  G 
Sbjct: 49  -----IETVRFLLEWGADP-HILAKER----------------------ESALSLASTGG 80
Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
             DIV  L+  D  +  + D  G T L  A++    + V  LL+  G D+ +   +G +P
Sbjct: 81  YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTP 138
Query: 299 LDVAEKLG 306
           +D+A  LG
Sbjct: 139 MDLAVALG 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	561
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-39
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-34
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-30
2rfa_A	232	Transient receptor potential cation channel subfa	3e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-28
2etb_A	256	Transient receptor potential cation channel subfam	5e-23
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-27
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-25
2pnn_A	273	Transient receptor potential cation channel subfa	2e-21
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  143 bits (362), Expect = 2e-39
 Identities = 56/221 (25%), Positives = 83/221 (37%), Gaps = 24/221 (10%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEI---LQSCDANEAKDLLSKKNQEGETPLYVA 166
           K+      + GD  LHLA      +  ME+   ++   A      L+ +N   +TPL++A
Sbjct: 1   KQQLT---EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLA 52

Query: 167 AESGHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHL-VVKALVSKDPSTGFR- 222
             +    I E +L                G    H+A +QG L  V  L     +     
Sbjct: 53  VITNQPEIAEALLGAG----CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 223 ----TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
               T+  G T LH+A       IV  L+     V   E   G TALH+A+      +V 
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168

Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            LL   G DVN +   G SP  +     +T +   L +   
Sbjct: 169 LLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  121 bits (306), Expect = 1e-31
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 13/192 (6%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           LHLA        + E L     +        ++  G TPL++A E G    V  + Q   
Sbjct: 49  LHLAVITNQPE-IAEALLGAGCD-----PELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102

Query: 182 MNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
                + + A N  G+   H+A+  G+L +V+ LVS       +    G+TALH+AV  Q
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
           N D+V  L++    V      +G +   +   +  T+I + L     ++   +    E  
Sbjct: 163 NPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDE 220

Query: 299 LDVAEKLGNTEL 310
                +   TE 
Sbjct: 221 ESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.8 bits (234), Expect = 6e-22
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 44/186 (23%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALV 213
           +  ++G++ L++A       +  E+++ +  + A +  +                     
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--------------------- 41

Query: 214 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKK 271
                     +   QT LH+AV     +I   L+    DP    L D +GNT LH+A ++
Sbjct: 42  ----------NNLQQTPLHLAVITNQPEIAEALLGAGCDPE---LRDFRGNTPLHLACEQ 88

Query: 272 GRTQIVRCLLS-----IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSK 323
           G    V  L            + + N  G + L +A   G   +  LL   GA   A   
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 148

Query: 324 DHGKPP 329
            +G+  
Sbjct: 149 CNGRTA 154

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  140 bits (354), Expect = 2e-38
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
            P K G +++  A          E+            +       +T  +     G   +
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM------SDTNWWKGTSKGRTGL 60

Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTAL 231
           +               A +  +  H AAK+G+L  ++  +      +     DK G TAL
Sbjct: 61  IPSNYVAEQ-------AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG---LDKAGSTAL 110

Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
           + A  G ++DIV  L       L  ++  G+TALH A  KG   IV+ LL+ +G   +  
Sbjct: 111 YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLR 169

Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGAA-HSKDHG 326
           N   +   D+A       L    +   A     +  
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE 205

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (292), Expect = 6e-30
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 14/171 (8%)

Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-V 208
             K  + G+  ++ A  +      +E+          I         ++     +G   +
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIE----EGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
           + +    +        +     LH A K  N   + E +     V    D  G+TAL+ A
Sbjct: 61  IPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWA 113

Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              G   IV  L +   I++N  NK G++ L  A   G  ++  LL   GA
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 96.9 bits (242), Expect = 4e-23
 Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 21/166 (12%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
                 +  D  LH AA+ GNLS  +              ++  ++ G T LY A   GH
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLS-WLRECLDNRVG-----VNGLDKAGSTALYWACHGGH 118

Query: 172 ALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQ 228
             IVE +    N     +  +N  G  + H AA +G+  +V+ L++K   T  R + + +
Sbjct: 119 KDIVEMLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKK 174

Query: 229 TALHMAVKGQNEDIVLELIRPDPSV--------LKLEDNKGNTALH 266
            A  MA       ++ +    D           L  ED+      H
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  138 bits (351), Expect = 7e-38
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 19/219 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESG 170
           +   P K     LH AA    +  +++   S  A  +             TPL+ A   G
Sbjct: 34  DVRQPDKENVTLLHWAAINNRI-DLVKYYISKGAIVDQLG-----GDLNSTPLHWATRQG 87

Query: 171 HALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKK 226
           H  +V +++++  +          G    H+AA+ GH  +V  L++K  D       D+ 
Sbjct: 88  HLSMVVQLMKYGADPSLID---GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM---MDQN 141

Query: 227 GQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
           G T L  A  +  + D    L+  + SV   +    NTALH A+  G T ++  LL   G
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-G 200

Query: 286 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
            +V++ N  GES LD+A++  N  + + L+EA  A   D
Sbjct: 201 ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  121 bits (307), Expect = 9e-32
 Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 23/216 (10%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +           +  A + G   R    L     +     + + ++E  T L+ AA +  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERC-RELVEAGYD-----VRQPDKENVTLLHWAAINNR 54

Query: 172 ALIVEEMLQHMNLETASIPARN---GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDK 225
             +V+  +       A +            H A +QGHL +V  L+    DPS     D 
Sbjct: 55  IDLVKYYISK----GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS---LIDG 107

Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG-RTQIVRCLLSIE 284
           +G + +H+A +  +  IV  LI     V  + D  G T L  A  +       R LL+  
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLT-F 165

Query: 285 GIDVNSLNKA-GESPLDVAEKLGNTELFSLLKEAGA 319
            + VN  +K    + L  A   GNT + SLL EAGA
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (278), Expect = 1e-27
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKA 211
             +      +  A + G      E+++   ++       +      H AA    + +VK 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD---KENVTLLHWAAINNRIDLVKY 60

Query: 212 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 271
            +SK             T LH A +  +  +V++L++       L D +G + +H+A + 
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQF 119

Query: 272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT-ELFSLLKEAGA---AHSKDHGK 327
           G T IV  L++ +G DV+ +++ G +PL  A    ++ +   LL           K H  
Sbjct: 120 GHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178

Query: 328 PP 329
             
Sbjct: 179 TA 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (339), Expect = 2e-36
 Identities = 44/209 (21%), Positives = 92/209 (44%), Gaps = 20/209 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           LHLAAR        + L    A+      + ++  G TPL+ A  +    + + ++++  
Sbjct: 29  LHLAARYSRS-DAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 182 MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
            +L+       +G     +AA+     +++ L++   D +     D  G++ALH A    
Sbjct: 83  TDLDAR---MHDGTTPLILAARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVN 136

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
           N D  + L++   +   +++N+  T L +A ++G  +  + LL     + +  +     P
Sbjct: 137 NVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLP 194

Query: 299 LDVAEKLGNTELFSLLKEAGAAHSKD-HG 326
            D+A++  + ++  LL E     S   HG
Sbjct: 195 RDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (289), Expect = 2e-29
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 13/192 (6%)

Query: 131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP 190
           G+   V+       A+    L ++ ++ GET L++AA    +   + +L+     +A   
Sbjct: 1   GDAPAVISDFIYQGAS----LHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADAN 52

Query: 191 AR--NGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 247
            +   G    H A       V + L+    +        G T L +A +   E ++ +LI
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
                V    D+ G +ALH A           LL   G + +  N   E+PL +A + G+
Sbjct: 113 NSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGS 170

Query: 308 TELFSLLKEAGA 319
            E   +L +  A
Sbjct: 171 YETAKVLLDHFA 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  139 bits (352), Expect = 3e-36
 Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 24/245 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +  SP   G   LH+AA+   +  V   L     +      + ++ +G TPL++AA+ GH
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVE-VARSLLQYGGS-----ANAESVQGVTPLHLAAQEGH 257

Query: 172 ALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKG 227
           A +V  +L    N    +   ++G    H+ A++GH+ V   L+           T + G
Sbjct: 258 AEMVALLLSKQANGNLGN---KSGLTPLHLVAQEGHVPVADVLIKHGVMVDA---TTRMG 311

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
            T LH+A    N  +V  L++    V   +   G + LH A ++G T IV  LL   G  
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGAS 369

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGA------AHSKDHGKPPSATKQLKQTVSD 341
            N ++  G +PL +A++LG   +  +LK             K     P    ++     D
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSED 429

Query: 342 IKHDV 346
              ++
Sbjct: 430 EGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (351), Expect = 5e-36
 Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 18/212 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +    + +  LH+AARAG+   V + L    A      ++ K ++ +TPL+ AA  GH
Sbjct: 39  SPNVSNVKVETPLHMAARAGHTE-VAKYLLQNKAK-----VNAKAKDDQTPLHCAARIGH 92

Query: 172 ALIVEEMLQHM-NLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKG 227
             +V+ +L++  N   A+     G+   H+AA++GH+  V AL+ K    +      KKG
Sbjct: 93  TNMVKLLLENNANPNLAT---TAGHTPLHIAAREGHVETVLALLEKEASQAC---MTKKG 146

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
            T LH+A K     +   L+  D          G T LH+A+      IV+ LL   G  
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGS 204

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            +S    G +PL +A K    E+   L + G 
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (347), Expect = 2e-35
 Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 18/212 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +    G+ G   LH+A+  G+L  +++ L    A+      +  N + ETPL++AA +GH
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLP-IVKNLLQRGAS-----PNVSNVKVETPLHMAARAGH 59

Query: 172 ALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKG 227
             + + +LQ+   +   +   ++     H AA+ GH  +VK L+    +P+        G
Sbjct: 60  TEVAKYLLQNKAKVNAKA---KDDQTPLHCAARIGHTNMVKLLLENNANPNL---ATTAG 113

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
            T LH+A +  + + VL L+  + S       KG T LH+A K G+ ++   LL      
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAH 171

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            N+  K G +PL VA    N ++  LL   G 
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  133 bits (338), Expect = 4e-36
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S  +      L +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 240
           N+     P  +G+  FH+A   G+L VVK+L  +       +   +G T LH+AV  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
           ++   LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL 
Sbjct: 121 EVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

Query: 301 VAEKLGNTELFSLL 314
            A   G+ +   LL
Sbjct: 180 HALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  132 bits (336), Expect = 6e-36
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 15/194 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH +        +   L S   N    D     +  G TP ++A   G+  +V+ +    
Sbjct: 40  LHWSVSFQAH-EITSFLLSKMENVNLDD---YPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 183 NLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
                 +      G    H+A  +    V + L+            DK  Q  LH A   
Sbjct: 96  --LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI---KDKFNQIPLHRAASV 150

Query: 238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES 297
            +  ++  L     S +  +D +G T L  A+ +G       L+   G + + ++  G  
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210

Query: 298 PLDVAEKLGNTELF 311
             DVA      + F
Sbjct: 211 AEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (289), Expect = 2e-29
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 159 GETPLYVAAESGHALIVEEML--QHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK 215
              PL+ A        V+E+L  +   L       ++G    H +       +   L+SK
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK---DQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 216 --DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-LKLEDNKGNTALHIAIKKG 272
             + +     D  G T  H+A    N ++V  L        L    N+G T LH+A+ K 
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH--SKD-HGKPP 329
             ++ + L+   G  V   +K  + PL  A  +G+ +L  LL   G +    +D  G  P
Sbjct: 119 WFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 76.7 bits (190), Expect = 4e-16
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 21/142 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +    +G   LHLA        V + L    A+     +  K++  + PL+ AA  G 
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFE-VSQFLIENGAS-----VRIKDKFNQIPLHRAASVGS 152

Query: 172 ALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVSK---DPSTGFRTDK 225
             ++E +        +++  +   G+     A  +GH      LV K   +       D 
Sbjct: 153 LKLIELLCGL---GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---LVDN 206

Query: 226 KGQTALHMAVKGQNEDIVLELI 247
           KG  A  +A+   NE +    +
Sbjct: 207 KGAKAEDVAL---NEQVKKFFL 225

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  132 bits (336), Expect = 9e-36
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 11/199 (5%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLA        V+ +L +  A+         ++ G+T  ++A E      +  +L    
Sbjct: 50  LHLAVITTLP-SVVRLLVTAGAS-----PMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240
             T  + ARN  G  + HVA        V+ L+ +         K G++ L  AV+  + 
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
            +V  L++   +V   +   G++ALH A  +G   +VR L+   G D +  N   ++PL 
Sbjct: 164 SMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLM 221

Query: 301 VAEKLGNTELFSLLKEAGA 319
           VA      ++        A
Sbjct: 222 VARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (314), Expect = 1e-32
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 19/205 (9%)

Query: 124 LHLAARAGNLSRV---MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
           LH+A   GNL  V   + + Q          L   N   +TPL++A  +    +V  ++ 
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 181 HMNLETASIPA--RNGYDSFHVAAKQGHL-VVKALVSKDPSTGF---RTDKKGQTALHMA 234
                 AS  A  R+G  + H+A +      ++AL+             +  G TALH+A
Sbjct: 68  A----GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 235 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA 294
           V  + ++ V  L+     +  ++   G + L  A++     +V+ LL   G +VN+   +
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYS 182

Query: 295 GESPLDVAEKLGNTELFSLLKEAGA 319
           G S L  A   G   L   L  +GA
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGA 207

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  117 bits (295), Expect = 4e-30
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL- 207
           + ++ +++G+TPL++A   G+   V  ++         +   N       H+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 208 VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---PDPSVLKLEDNKGN 262
           VV+ LV+    P      D+ GQTA H+A + ++   +  L+    P    L+  +  G 
Sbjct: 61  VVRLLVTAGASPMA---LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 263 TALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 319
           TALH+A+     + V+ LL   G D+++++ K+G SPL  A +  +  +  LL + GA
Sbjct: 118 TALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRCL 280
           D+ G T LH+AV   N   V  L+         L + +N   T LH+A+      +VR L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 281 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 324
           ++  G    +L++ G++   +A +  +      L ++ A  + D
Sbjct: 66  VT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (334), Expect = 2e-35
 Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 19/213 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           N D+  +     L  AA   +L   ++ L    A      +  K+ EG T L++AA+ GH
Sbjct: 36  NIDTCSEDQRTPLMEAAENNHL-EAVKYLIKAGAL-----VDPKDAEGSTCLHLAAKKGH 89

Query: 172 ALIVEEMLQH--MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKK 226
             +V+ +L +  M++         G+     A +  H+ +VK L+SK  D +     D +
Sbjct: 90  YEVVQYLLSNGQMDVNCQD---DGGWTPMIWATEYKHVDLVKLLLSKGSDINI---RDNE 143

Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
               LH A      DI   L+     +    +  G++ LHIA ++ R   V   LS    
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLS-RDS 201

Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DV   NK GE+PL  A           + +A  
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  128 bits (325), Expect = 4e-34
 Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 15/199 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH AA AG++  +  +L    AN     +   +++  TPL  AAE+ H   V+ +++   
Sbjct: 15  LHAAAEAGHV-DICHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLIKA-- 66

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240
              A +  ++  G    H+AAK+GH  VV+ L+S         D  G T +  A + ++ 
Sbjct: 67  --GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
           D+V  L+     +  + DN+ N  LH A   G   I   LL+    D++++N  G+SPL 
Sbjct: 125 DLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLH 182

Query: 301 VAEKLGNTELFSLLKEAGA 319
           +A +    +   L     +
Sbjct: 183 IAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (292), Expect = 1e-29
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 13/182 (7%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKA 211
            ++Q   +PL+ AAE+GH  I   ++Q   N++T S    +       AA+  HL  VK 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS---EDQRTPLMEAAENNHLEAVKY 62

Query: 212 LVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           L+            D +G T LH+A K  + ++V  L+      +  +D+ G T +  A 
Sbjct: 63  LIKAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGK 327
           +     +V+ LLS  G D+N  +      L  A   G  ++  +L  A    H+ + HG 
Sbjct: 120 EYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178

Query: 328 PP 329
            P
Sbjct: 179 SP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 181 HMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
           HMN +      +N     H AA+ GH+ +   LV    +  T     +  +T L  A + 
Sbjct: 1   HMNFKMEH---QNKRSPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAEN 54

Query: 238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES 297
            + + V  LI+    V   +D +G+T LH+A KKG  ++V+ LLS   +DVN  +  G +
Sbjct: 55  NHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113

Query: 298 PLDVAEKLGNTELFSLLKEAGA 319
           P+  A +  + +L  LL   G+
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGS 135

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  131 bits (333), Expect = 3e-35
 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 19/207 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           LHLAAR        + L    A+      + ++  G TPL+ A  +    + + ++++  
Sbjct: 61  LHLAARYSRS-DAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114

Query: 182 MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
            +L+       +G     +AA+     +++ L++   D +     D  G++ALH A    
Sbjct: 115 TDLDAR---MHDGTTPLILAARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVN 168

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
           N D  + L++   +   +++N+  T L +A ++G  +  + LL     + +  +     P
Sbjct: 169 NVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLP 226

Query: 299 LDVAEKLGNTELFSLLKEAGAAHSKDH 325
            D+A++  + ++  LL      H   H
Sbjct: 227 RDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (310), Expect = 6e-32
 Identities = 46/208 (22%), Positives = 78/208 (37%), Gaps = 19/208 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANE-AKDLLSK-------KNQEGETPLYVAAESGHALIV 175
           L +A+ +G         +  DA     D + +        ++ GET L++AA    +   
Sbjct: 14  LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA 73

Query: 176 EEMLQH---MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTAL 231
           + +L+     N     I    G    H A       V + L+    +        G T L
Sbjct: 74  KRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
            +A +   E ++ +LI     V    D+ G +ALH A           LL   G + +  
Sbjct: 129 ILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQ 186

Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGA 319
           N   E+PL +A + G+ E   +L +  A
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.5 bits (249), Expect = 9e-24
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 24/167 (14%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKAL 212
            +  +G TPL +A+ SG                       G ++ +   ++    V+   
Sbjct: 5   VRGPDGFTPLMIASCSGG----------------------GLETGNSEEEEDAPAVISDF 42

Query: 213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272
           + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH A+   
Sbjct: 43  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSAD 101

Query: 273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              + + L+     D+++    G +PL +A +L    +   L  + A
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  134 bits (339), Expect = 6e-35
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 21/221 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++     +  L LA  A    R++  L    A+      +  N+   + L+ AA +  
Sbjct: 158 DVNAMDCDENTPLMLAVLARRR-RLVAYLMKAGAD-----PTIYNKSERSALHQAAANRD 211

Query: 172 ALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL----VVKALVSK-------DPS 218
             ++  ML    L+   I   +  G  +  + A           K LV K         +
Sbjct: 212 FGMMVYMLNSTKLK-GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
                  KG+TALH A +  N  IV  L+    S    +D  G T + +A ++GR ++V 
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330

Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            L+  +G  V +++    +   +A+   +  +  +      
Sbjct: 331 YLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (311), Expect = 4e-31
 Identities = 45/218 (20%), Positives = 85/218 (38%), Gaps = 31/218 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSK------KNQEGETPLYVAAESGHALIVEE 177
           LH  A   +     E  +    +EAK+ ++        + +  TPL +A  +    +V  
Sbjct: 129 LHWIASNSSA----EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 178 MLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGF---RTDKKGQTAL 231
           +++      A     N     + H AA      ++  +++            D+ G TAL
Sbjct: 185 LMKA----GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK-LKGDIEELDRNGMTAL 239

Query: 232 HMAVKGQNEDIVLE---LI-------RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
            +    +  D V     L+           +    E  KG TALH A +     IV+ L+
Sbjct: 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299

Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             +G + +  ++ G++P+ +A + G  E+   L + GA
Sbjct: 300 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (302), Expect = 6e-30
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 26/227 (11%)

Query: 107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA 166
           G  K+ ++                GN   + +   +          ++   E    L+  
Sbjct: 48  GYIKRQRNELQHYSLYPNPQGYGNGNDF-LGDFNHTNLQI-----PTEPEPESPIKLHTE 101

Query: 167 AESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGF--- 221
           A +G   I E + +  +N+       R+     H  A        + L+  +        
Sbjct: 102 A-AGSYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 222 ----RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
                 D    T L +AV  +   +V  L++       + +    +ALH A       ++
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMM 215

Query: 278 RCLLS--IEGIDVNSLNKAGESPLDVAEKLGNTELFS---LLKEAGA 319
             +L+      D+  L++ G + L +       +  +   LL E GA
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  106 bits (268), Expect = 2e-25
 Identities = 29/207 (14%), Positives = 64/207 (30%), Gaps = 22/207 (10%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           +  + + H +  +   S    +L++      K   ++       P      +G+  + + 
Sbjct: 24  EEKNRKNHQSITSSQHS----LLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDF 79

Query: 178 MLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMA 234
              +                   H  A  G   + + +  +  +      +  +T LH  
Sbjct: 80  NHTN----LQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVN--IIDPRHNRTVLHWI 132

Query: 235 VKGQNEDIVLELIRPDPSVLKLE-------DNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
               + +   +LI  +              D   NT L +A+   R ++V  L+   G D
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGAD 191

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLL 314
               NK+  S L  A    +  +   +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 96.9 bits (242), Expect = 6e-22
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 27/176 (15%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKAL 212
           +     +  L  A+  G+       LQH                       G+  +    
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNELQH-----------YSLYPNPQGYGNGNDFLGDFN 80

Query: 213 VSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 270
            +    P+     + +    LH    G +  I   + R   +++        T LH    
Sbjct: 81  HTNLQIPTEP---EPESPIKLHTEAAG-SYAITEPITRESVNIID--PRHNRTVLHWIAS 134

Query: 271 KGRTQIVRCLLSIE-------GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
               +    L+  E       G DVN+++    +PL +A       L + L +AGA
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  130 bits (329), Expect = 3e-34
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 21/200 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A   G+L   ++IL    A      ++    +  TPL+ A  SG    V  +LQH  
Sbjct: 96  LHEACLGGHL-SCVKILLKHGAQ-----VNGVTADWHTPLFNACVSGSWDCVNLLLQH-- 147

Query: 184 LETASI-PARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 239
              AS+ P  +     H AA++GH+  V +L++   +            T L++A + Q 
Sbjct: 148 --GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK---ISHLGTPLYLACENQQ 202

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 299
              V +L+     V +      ++ LH  ++    ++   L+   G D  + N  G+ P+
Sbjct: 203 RACVKKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPV 259

Query: 300 DVAEKLGNTELFSLLKEAGA 319
           ++            L+  GA
Sbjct: 260 ELVPPESPLAQL-FLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  121 bits (305), Expect = 4e-31
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 22/201 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +H AA  G+    +  L S         ++    +  +PL+ A   GH   V+ +L+H  
Sbjct: 63  MHEAAIHGHQL-SLRNLISQGWA-----VNIITADHVSPLHEACLGGHLSCVKILLKHG- 115

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
              A +       +     A   G    V  L+            +    + +H A +  
Sbjct: 116 ---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP----ESDLASPIHEAARRG 168

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
           + + V  LI    ++   + +   T L++A +  +   V+ LL   G DVN   K  +SP
Sbjct: 169 HVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSP 225

Query: 299 LDVAEKLGNTELFSLLKEAGA 319
           L    +  + EL  LL + GA
Sbjct: 226 LHAVVRTASEELACLLMDFGA 246

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  108 bits (273), Expect = 1e-26
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 21/198 (10%)

Query: 126 LAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL 184
           + +   +       L    ++  + D   +   +G  P       G  L+          
Sbjct: 1   MGSSHHHHH-HSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNP------- 51

Query: 185 ETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNED 241
                 A + +   H AA  GH   ++ L+S+    +          + LH A  G +  
Sbjct: 52  --LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI---ITADHVSPLHEACLGGHLS 106

Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 301
            V  L++    V        +T L  A   G    V  LL   G  V   +    SP+  
Sbjct: 107 CVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPESD-LASPIHE 163

Query: 302 AEKLGNTELFSLLKEAGA 319
           A + G+ E  + L   G 
Sbjct: 164 AARRGHVECVNSLIAYGG 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (257), Expect = 1e-24
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           L  A  +G+    + +L    A+ + +        +  +P++ AA  GH   V  ++ + 
Sbjct: 129 LFNACVSGSWD-CVNLLLQHGASVQPES-------DLASPIHEAARRGHVECVNSLIAY- 179

Query: 183 NLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
                +I  +        ++A +      VK L+    D +      K   + LH  V+ 
Sbjct: 180 ---GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVVRT 232

Query: 238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
            +E++   L+       + ++ +G   + +   +    + +  L  EG  + 
Sbjct: 233 ASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
            + K +DSP       LH   R  +   +  +L    A+        KN EG+ P+ +  
Sbjct: 217 NQGKGQDSP-------LHAVVRTASEE-LACLLMDFGAD-----TQAKNAEGKRPVELVP 263

Query: 168 ESGHALIVEEMLQH 181
                 + +  L+ 
Sbjct: 264 PESP--LAQLFLER 275

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  126 bits (319), Expect = 3e-34
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           +H  A  G L   ++           +L++K ++ G TPL  A+  G    V  +L+   
Sbjct: 6   IHQLAAQGELD-QLKEHLRKGD----NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 182 -MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
             +     I A+    +  +A+  G+  +V  L+ +D       D  G T L  AV+G +
Sbjct: 61  DPH-----ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNH 114

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
              V  L+     +   E + G T + +A+  G  ++ + + +   + +   N     P
Sbjct: 115 VKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN-HILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (289), Expect = 5e-30
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 159 GETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK- 215
               ++  A  G    ++E L+   NL         G+     A+  G +  V+ L+   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP--DERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 216 -DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274
            DP       K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A++    
Sbjct: 60  ADPHIL---AKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHV 115

Query: 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           + V  LL+  G D+ +   +G +P+D+A  LG  ++  +++    
Sbjct: 116 KCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +     K  +  L LA+  G    ++ +L   D +     ++  +  G TPL  A    H
Sbjct: 61  DPHILAKERESALSLASTGGYTD-IVGLLLERDVD-----INIYDWNGGTPLLYAVRGNH 114

Query: 172 ALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKG 227
              VE +L     +  E       +GY    +A   G+  V + + +      F+++   
Sbjct: 115 VKCVEALLARGADLTTEA-----DSGYTPMDLAVALGYRKVQQVIENHILKL-FQSNLVP 168

Query: 228 QT 229
             
Sbjct: 169 AD 170

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  129 bits (327), Expect = 5e-34
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 26/212 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
             LAA AG++ +++++  S  A+     +++ +  G T    AA  G    ++ + +   
Sbjct: 76  FLLAAIAGSV-KLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129

Query: 182 ------MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK---DPSTGFRTDKKGQTAL 231
                    E      + G  +   AA++GH+ V+K L+ +   D +     D  G+ AL
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC---DNMGRNAL 186

Query: 232 HMAV----KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
             A+        E I   L+     V  +   +G T L +A++K    +V+ LL  E I+
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           +N  +  G++ L +A +L   ++  LL + GA
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (313), Expect = 4e-32
 Identities = 52/214 (24%), Positives = 85/214 (39%), Gaps = 30/214 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH- 181
           L  A +  ++  +++ L    AN   ++      + G TPL+ A +     IVE +L+H 
Sbjct: 9   LIKAVQNEDVD-LVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 182 MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
            +        +NG   F +AA  G + ++K  +SK  D +     D  G TA   A    
Sbjct: 63  ADPVLRK---KNGATPFLLAAIAGSVKLLKLFLSKGADVNE---CDFYGFTAFMEAAVYG 116

Query: 239 NEDIVLELI---------RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
               +  L          R      +     G TAL  A +KG  ++++ LL   G DVN
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 290 SLNKAGESPLDVAEKLGNTELFS----LLKEAGA 319
           + +  G + L  A    +         LL + GA
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (300), Expect = 3e-30
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 27/207 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A +      ++E+L    A+        + + G TP  +AA +G   +++  L    
Sbjct: 43  LHNAVQMSRED-IVELLLRHGAD-----PVLRKKNGATPFLLAAIAGSVKLLKLFLSK-- 94

Query: 184 LETASIPAR--NGYDSFHVAAKQGHL-VVKALVS---------KDPSTGFRTDKKGQTAL 231
              A +      G+ +F  AA  G +  +K L           K      R  K G TAL
Sbjct: 95  --GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT----QIVRCLLSIEGID 287
             A +  + +++  L+    + +   DN G  AL  A+          I   LL   G D
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGAD 211

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLL 314
           VN   + G++PL +A +  +  L   L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  103 bits (260), Expect = 6e-25
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF---HVAAKQGHL-VVKA 211
             E    L  A ++    +V+++L+      A++  +     +   H A +     +V+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

Query: 212 LVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           L+    DP       K G T   +A    +  ++   +     V    D  G TA   A 
Sbjct: 58  LLRHGADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAA 113

Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS------------LLKEA 317
             G+ + ++ L    G +VN   K  E   +   K G T L              LL E 
Sbjct: 114 VYGKVKALKFLYK-RGANVNLRRKTKEDQ-ERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 318 GA 319
           GA
Sbjct: 172 GA 173

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +  G+RG   L LA    +L  V  +L+          ++  + +G+T L +A E   
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----INDTDSDGKTALLLAVELKL 265

Query: 172 ALIVEEMLQH 181
             I E + + 
Sbjct: 266 KKIAELLCKR 275

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (331), Expect = 7e-34
 Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 42/237 (17%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKD-------------------L 151
           +     + G   LHLA + G +    + L S                            L
Sbjct: 45  SPTIQNRFGCTALHLACKFGCV-DTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL 103

Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL---V 208
           +    + G+ P  +  E     + E          + +    G  + H     G     +
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNEIG--------SHVKHCKGQTALHWCVGLGPEYLEM 155

Query: 209 VKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV----LKLEDNKGN 262
           +K LV     P+     DK  +T L  A++ +N + +  ++   PS     L   + +GN
Sbjct: 156 IKILVQLGASPTA---KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212

Query: 263 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           + LH AI      +    +   GIDVN  +     PL ++ +     L   L +   
Sbjct: 213 SHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  130 bits (329), Expect = 1e-33
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 28/215 (13%)

Query: 124 LHLAARAGNLSR-VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH     G     +++IL    A+      + K++  ETPL  A E  +   ++ M+  +
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGAS-----PTAKDKADETPLMRAMEFRNREALDLMMDTV 196

Query: 183 NLET-ASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVK 236
             ++   +   N  G    H A       V    V    D +     D +    L+++V+
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM---EDNEHTVPLYLSVR 253

Query: 237 GQNEDIVLELIRPDPSVLKL------------EDNKGNTALHIAIKKGRTQIVRCLLSIE 284
                +  EL++     L              +       +  A    + ++++ L   +
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE-K 312

Query: 285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             +V      G       +K     +  +     A
Sbjct: 313 LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (313), Expect = 2e-31
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +H+AAR G     +  L     +      + +N+ G T L++A + G     + +     
Sbjct: 24  IHVAARKGQT-DEVRRLIETGVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASV-- 75

Query: 184 LETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
                    +G    H+A       +V ALV           ++GQ    +  +    ++
Sbjct: 76  --GEVHSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECDEREV 126

Query: 243 VLELIRPDPSVLKLEDNKGNTALHIAIKKG--RTQIVRCLLSIEGIDVNSLNKAGESPLD 300
                        ++  KG TALH  +  G    ++++ L+   G    + +KA E+PL 
Sbjct: 127 NEIGS-------HVKHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDKADETPLM 178

Query: 301 VAEKLGNTELFSLL 314
            A +  N E   L+
Sbjct: 179 RAMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (302), Expect = 6e-30
 Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 24/208 (11%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +  +  K  +  L  A    N    ++++     +++   L   N++G + L+ A     
Sbjct: 165 SPTAKDKADETPLMRAMEFRNRE-ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW 223

Query: 172 ALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK------------ 215
             +    ++    +N+E             +++ +   + + K L+ K            
Sbjct: 224 EDVAMRFVEMGIDVNMED-----NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 216 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275
           + +T           +  A     ++++  L      V     N G        KK    
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAPA 337

Query: 276 IVRCLLSIEGIDVNSLNKAGESPLDVAE 303
           + R  L+     V + +++      V++
Sbjct: 338 VKRMKLA-PSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (261), Expect = 2e-24
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 33/188 (17%)

Query: 137 MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--G 194
           M      +  +        + E    ++VAA  G    V  +++       S   +N  G
Sbjct: 5   MTDFPKLNRIK-------SDDENMEKIHVAARKGQTDEVRRLIETG----VSPTIQNRFG 53

Query: 195 YDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 253
             + H+A K G +   K L S        +   GQ  +H+AV     D+V+ L+      
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVALV------ 104

Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN--TELF 311
            +    +G     +  +    ++         I  +  +  G++ L     LG    E+ 
Sbjct: 105 -EGAKERGQMPESLLNECDEREVN-------EIGSHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 312 SLLKEAGA 319
            +L + GA
Sbjct: 157 KILVQLGA 164

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 257 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
            D++    +H+A +KG+T  VR L+   G+     N+ G + L +A K G  +    L  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 317 AGAAHSKDHGKPP 329
            G  HS  HG+ P
Sbjct: 75  VGEVHSLWHGQKP 87

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  129 bits (326), Expect = 8e-34
 Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 19/206 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH AA  G L  + E L S  A+     +   N EG+TPL +A E     +++     +N
Sbjct: 110 LHAAASCGYLD-IAEYLISQGAH-----VGAVNSEGDTPLDIAEEEAMEELLQ---NEVN 160

Query: 184 LETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
            +   I A           +       + L S   +   R  K G TALH+A      ++
Sbjct: 161 RQGVDIEAAR-----KEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEV 214

Query: 243 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
           +  LI+    V  ++D  G T LH A   G+ +  R L+     D+ ++NK G++  DVA
Sbjct: 215 LKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVA 272

Query: 303 EKLGNTELFSLLKEAGAAHS-KDHGK 327
           ++     L  L K+    HS K   K
Sbjct: 273 DEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (281), Expect = 1e-27
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAES 169
           K  D+  KR      L    G+    +E         + K        +       A  S
Sbjct: 2   KMADAKQKR---NEQLKRWIGSE-TDLEPPVVKRKKTKVKF-------DDGAVFLAACSS 50

Query: 170 GHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTD 224
           G    V  +L+      A I   N  G  + H A    ++ +VK LV    + +   + D
Sbjct: 51  GDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN---QPD 103

Query: 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284
            +G   LH A      DI   LI     V    +++G+T L IA ++   ++++  ++ +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 285 GIDVNSLNKAGESPL--DVAEKL 305
           G+D+ +  K  E  +  D  + L
Sbjct: 163 GVDIEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 7e-16
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 199 HVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 257
            +    G    ++  V K   T  +           A    + + VL L+     +    
Sbjct: 13  QLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYA 69

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
           +  G TALH A       +V+ L+   G ++N  +  G  PL  A   G  ++   L   
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

Query: 318 GA 319
           GA
Sbjct: 129 GA 130

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.0 bits (175), Expect = 9e-14
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           D K +    +     +E  +   +                    A   G T+ V  LL  
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTK--VKFDDGAVFLAACSSGDTEEVLRLLE- 61

Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            G D+N  N  G + L  A    N ++   L E GA
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 254 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 313
           +K+ D K      +    G    +   +  +          G   L      G+TE    
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAVFLAACSS-GDTEEVLR 58

Query: 314 LKEAGA 319
           L E GA
Sbjct: 59  LLERGA 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (319), Expect = 6e-33
 Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 21/209 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           LHLAA  G  S  +E L +  A      +    + G T L++A           +LQ   
Sbjct: 49  LHLAAILGEAS-TVEKLYAAGAG-----VLVAERGGHTALHLACRVRAHTCACVLLQPRP 102

Query: 182 ---------MNLETASIPARNGYDSFHVAAKQGHL--VVKALVSKDPSTGFRTDKKGQTA 230
                       ++        +    V ++                      +  G T 
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTP 161

Query: 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 290
           LH+AV  ++ ++V  L      + K E   G T LH+A++     ++  LL   G D  +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTA 220

Query: 291 LNKAGESPLDVAEKLGNTELFSLLKEAGA 319
               G +PL  A    N  L  LL+  GA
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  120 bits (304), Expect = 7e-31
 Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 17/204 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN---EAKDLLS-----KKNQEGETPLYVAAESGHALIV 175
           LHLA R         +L     +   +A D                P  V ++       
Sbjct: 82  LHLACRVRAH-TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 176 EEMLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALH 232
           E   +        + A N       HVA       +V+ L              G+T LH
Sbjct: 141 EPRDEDWR---LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197

Query: 233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 292
           +AV+ Q   ++  L++            G T L  A+ +    + R L +  G       
Sbjct: 198 LAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRA-HGAPEPEDG 255

Query: 293 KAGESPLDVAEKLGNTELFSLLKE 316
               SP   +    +++      E
Sbjct: 256 GDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (293), Expect = 2e-29
 Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 24/212 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLA    +    ++ L    A    + L  +N  G+T L++AA  G A  VE++     
Sbjct: 13  LHLAVIHQHEP-FLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-- 67

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSKD------------PSTGFRTDKKGQ 228
              A +      G+ + H+A +         L+                 +   T     
Sbjct: 68  --GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 288
               +  +   E+            L+ E+  G+T LH+A+     ++VR L    G D+
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADL 184

Query: 289 NSLNK-AGESPLDVAEKLGNTELFSLLKEAGA 319
           N      G +PL +A +     +  LL +AGA
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (255), Expect = 3e-24
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 22/198 (11%)

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-V 208
           +     ++G+T L++A    H   ++ +L      E   +    G  + H+AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 209 VKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK----------- 255
           V+ L +           ++ G TALH+A + +       L++P PS  +           
Sbjct: 61  VEKLYAAGAGVLV---AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 256 -LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 314
               +  +    +  +               + + + N  G +PL VA    + E+  LL
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 315 KEAGA---AHSKDHGKPP 329
           ++AGA         G+ P
Sbjct: 178 RDAGADLNKPEPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH+A    +   ++ +L+   A+    +        G TPL++A E+  A ++E +L+  
Sbjct: 162 LHVAVIHKDA-EMVRLLRDAGADLNKPE-----PTCGRTPLHLAVEAQAASVLELLLKA- 214

Query: 183 NLETASIPAR--NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
               A   AR   G      A  + +  + + L +                +    +   
Sbjct: 215 ---GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP---EDGGDKLSPCSSSGSD 268

Query: 238 QNEDIVLELIRPD 250
            + D   E    D
Sbjct: 269 SDSDNRDEGDEYD 281

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  125 bits (316), Expect = 1e-32
 Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 22/208 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
            + A    N+ R++  L +  A     +         E PL+ AA      IV+ +L   
Sbjct: 35  SYYAIADNNV-RLVCTLLNAGALKNLLE--------NEFPLHQAATLEDTKIVKILLFSG 85

Query: 183 NLETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
                     +  G  + + A   G++  VK  V K+    F      +T+ + AV   +
Sbjct: 86  ----LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP- 298
             IV   +   PS          + +HI IK G   ++  LL       N+ N     P 
Sbjct: 142 VSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPD 198

Query: 299 LDVAEKLGNTELFSLLKEAGA-AHSKDH 325
           + +A    + E+   L +     +S + 
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIYSANL 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (301), Expect = 2e-30
 Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 19/197 (9%)

Query: 126 LAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
                    ++   L S D  +        +  G +  Y A    +  +V  +L      
Sbjct: 5   SRINTWKSKQLKSFLSSKDTFK-------ADVHGHSASYYAIADNNVRLVCTLLNA---- 53

Query: 186 TASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDI 242
            A           H AA      +VK L+    D S     D KG TAL+ AV   N   
Sbjct: 54  GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ---FDDKGNTALYYAVDSGNMQT 110

Query: 243 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
           V   ++ +  ++        T+ + A+      IV   LS E            S + + 
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPSTFD-LAILLSCIHIT 168

Query: 303 EKLGNTELFSLLKEAGA 319
            K G+ ++  LL +   
Sbjct: 169 IKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  106 bits (267), Expect = 7e-26
 Identities = 26/200 (13%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESG 170
           +      +G+  L+ A  +GN+ + +++    +                +T  Y A    
Sbjct: 87  DDSQFDDKGNTALYYAVDSGNM-QTVKLFVKKNWRLMFYG-----KTGWKTSFYHAVMLN 140

Query: 171 HALIVEEMLQHMNLETASIPARN-GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKK 226
              IV   L        S           H+  K GH+ ++  L+      +T    +  
Sbjct: 141 DVSIVSYFLSE----IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT---NNSL 193

Query: 227 GQT-ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
                + +A+  ++ +++  L + D ++         +A    +     +I + ++  + 
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYDINI--------YSANLENVLLDDAEIAKMIIE-KH 244

Query: 286 IDVNSLNKAGESPLDVAEKL 305
           ++  S +   +  +    KL
Sbjct: 245 VEYKSDSYTKDLDIVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 23/174 (13%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
            + A    ++S ++    S   +              + +++  ++GH  ++  +L +M 
Sbjct: 133 FYHAVMLNDVS-IVSYFLSEIPSTFDL------AILLSCIHITIKNGHVDMMILLLDYM- 184

Query: 184 LETASIPARNGYD---SFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
               S    N         +A     + +++AL   D +          +A    V   +
Sbjct: 185 ---TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN--------IYSANLENVLLDD 233

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
            +I   +I       K +    +  +    K    +I+     +  + VN + K
Sbjct: 234 AEIAKMIIEKHVEY-KSDSYTKDLDIVKNNKL--DEIISKNKELRLMYVNCVKK 284

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  120 bits (303), Expect = 5e-32
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 17/174 (9%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK 215
               ++  A  G  L +   ++        I   +  G+     AA  G + VV+ L+  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 216 --DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 273
             DP       K  ++AL +A      DIV  L+     V    D  G T L  A+    
Sbjct: 59  GADPQL---LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNH 114

Query: 274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKD 324
            + V+ LL   G D      +G + +D+A  LG   +  +++        + K+
Sbjct: 115 VKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  118 bits (298), Expect = 2e-31
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 18/174 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
           +H  A  G +   +      +       ++  ++EG TPL  AA  G   +VE +LQ+  
Sbjct: 7   VHQLAAQGEM-LYLATRIEQENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 239
           + +      +    +  +A  +G+  +VK L+    D +     D  G T L  AV G +
Sbjct: 61  DPQLLG---KGRESALSLACSKGYTDIVKMLLDCGVDVNE---YDWNGGTPLLYAVHGNH 114

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
              V  L+        +E + G  ++ +A+  G   + + + S   + +    K
Sbjct: 115 VKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES-HLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.8 bits (237), Expect = 6e-23
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 248
               S H  A QG +  +   + +    +    TD++G T L  A       +V  L++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 249 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
             DP +         +AL +A  KG T IV+ LL   G+DVN  +  G +PL  A    +
Sbjct: 59  GADPQL---LGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNH 114

Query: 308 TELFSLLKEAGA 319
            +   +L E+GA
Sbjct: 115 VKCVKMLLESGA 126

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.9 bits (162), Expect = 6e-13
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +    GK  +  L LA   G    ++++L  C  +     +++ +  G TPL  A    H
Sbjct: 61  DPQLLGKGRESALSLACSKGYTD-IVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNH 114

Query: 172 ALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK 215
              V+ +L+      +ET      +GY+S  +A   G+  V + + S 
Sbjct: 115 VKCVKMLLESGADPTIET-----DSGYNSMDLAVALGYRSVQQVIESH 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (300), Expect = 2e-31
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 156 NQEGETPLYVAAESGHALIVEEMLQH--MNLETASIPARNGYDSFHVAAKQGHL-VVKAL 212
           + E    ++     G+A+ V   L +   +L        +G+   H A ++G   VV+ L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG---DDHGFSPLHWACREGRSAVVEML 58

Query: 213 VSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIA 268
           + +    +     ++   T LH+A    + DIV +L++   D +     +  GN  LH A
Sbjct: 59  IMRGARIN---VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYA 112

Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              G+ Q+   L++  G  V+  NK GE P+D A+      L    ++ G 
Sbjct: 113 CFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  113 bits (286), Expect = 2e-29
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +    R GN   V  +      N+    L++ +  G +PL+ A   G + +VE ++    
Sbjct: 9   IFTQCREGNAVAV-RLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMR-- 61

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
              A I   N       H+AA  GH  +V+ L+    D +     ++ G   LH A    
Sbjct: 62  --GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWG 116

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
            + +  +L+     V  + +  G   +  A    R  +        G ++N        P
Sbjct: 117 QDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK-MGQNLN------RIP 168

Query: 299 LDVAEKLGNT 308
                  G T
Sbjct: 169 YKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 90.6 bits (226), Expect = 3e-21
 Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 25/157 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A R G  + V+E+L    A      ++  N+  +TPL++AA  GH  IV+++LQ+  
Sbjct: 43  LHWACREGRSA-VVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-- 94

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
              A I A N  G    H A   G   V + LV+     S     +K G+  +  A    
Sbjct: 95  --KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI---CNKYGEMPVDKAKAPL 149

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 275
            E +            K+  N           KG T+
Sbjct: 150 RELLRERAE-------KMGQNLNRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  + G++ LH A   G    V E L +  A      +S  N+ GE P+  A     
Sbjct: 97  DINAVNEHGNVPLHYACFWGQDQ-VAEDLVANGAL-----VSICNKYGEMPVDKAKAPLR 150

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207
            L+ E   +       ++        +     +G  
Sbjct: 151 ELLRERAEKM----GQNLNRIP----YKDTFWKGTT 178

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  119 bits (302), Expect = 2e-31
 Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 17/200 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
           L  A +     +V EILQ          + + + EG TPL +A  +    I + ++    
Sbjct: 10  LEAANQRDTK-KVKEILQDTTYQ-----VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 183 NLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
           ++   +         +  A  QG   ++  ++        + ++ G  AL  A +  + D
Sbjct: 64  DINLQN---SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAI-----KKGRTQIVRCLLSIEGIDVNSLNKAGE 296
            V  L+      +  +++ G TAL  A+      +    IV+ L+   G D +  + +G 
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSGR 179

Query: 297 SPLDVAEKLGNTELFSLLKE 316
           + +D A + G TE+  +L +
Sbjct: 180 TAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (269), Expect = 6e-27
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 19/187 (10%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKA 211
           K  E    L  A +     + E +       T  +   +  G    ++A     + + KA
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDT----TYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 212 LVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           L+ +  D +     +    +    A      +I+  +++     L   +  G  AL  A 
Sbjct: 58  LIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114

Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL-----GNTELFSLLKEAGA-AHSK 323
           +KG    V+ LL     D++  N  G + L  A  L        ++  LL E GA    K
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174

Query: 324 D-HGKPP 329
           D  G+  
Sbjct: 175 DNSGRTA 181

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 124 LHLAARAGNLSR----VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           L  A      ++    ++++L    A+      S K+  G T +  A + G+  I + + 
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGAD-----QSIKDNSGRTAMDYANQKGYTEISKILA 198

Query: 180 QH 181
           Q+
Sbjct: 199 QY 200

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (297), Expect = 2e-30
 Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 37/224 (16%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           L LAA+  ++  + ++L+          + ++   GET L++AA   +      +++   
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCE-----VHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 182 -MNLETASIPARNGYDSFHVAAKQGHL-VVKALVS-------KD-----PSTGFRTDKKG 227
            +  E  +     G  + H+A    ++ +V+AL++       +                G
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 228 QTALHMAVKGQNEDIVLELI--RPDPSVLKLEDNKGNTALHIAIKKGRTQIVR----CLL 281
           +  L  A    +E+IV  LI    D      +D+ GNT LHI I +            LL
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRA---QDSLGNTVLHILILQPNKTFACQMYNLLL 178

Query: 282 SIEGIDVN------SLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           S      +        N  G +P  +A   GN  +F  L +   
Sbjct: 179 SY-DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  106 bits (266), Expect = 3e-26
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 23/182 (12%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVSK 215
            E+PL +AA+      + ++L     E   +  R   G  + H+AA   +L     L+  
Sbjct: 3   WESPLLLAAKENDVQALSKLL---KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59

Query: 216 DPSTGFRT----DKKGQTALHMAVKGQNEDIVLELI------------RPDPSVLKLEDN 259
            P   F        +GQTALH+AV  QN ++V  L+                        
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            G   L  A   G  +IVR L+   G D+ + +  G + L +     N      +     
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLL 178

Query: 320 AH 321
           ++
Sbjct: 179 SY 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  117 bits (295), Expect = 3e-30
 Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 25/225 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L    R     +      +           K N      L  ++  G   +V+ ++  + 
Sbjct: 9   LPPGKRTNLR-KTGSERIAHGMR------VKFNPLPLALLLDSSLEGEFDLVQRIIYEV- 60

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
                    N  G  + H A   GH  +VK LV    + +     D  G T LH A    
Sbjct: 61  ---DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCN 114

Query: 239 NEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE 296
           N  +   L+        +   D +        +++G TQ  + L       +  +NK   
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG-VQEKMGIMNKGVI 173

Query: 297 SPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSD 341
             L   E   + E   L  + G   +  H +     +     ++D
Sbjct: 174 YALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  105 bits (263), Expect = 8e-26
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 16/168 (9%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHL-VVKALVSK- 215
           G+  L     +       E + H       +            ++ +G   +V+ ++ + 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAH----GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 216 -DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274
            DPS     + +G TALH AV   + +IV  L++   +V    D+ G T LH A      
Sbjct: 61  DDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNV 116

Query: 275 QIVRCLLSIEGIDVNSLNKAGE---SPLDVAEKLGNTELFSLLKEAGA 319
           Q+ + L+   G  V ++  +     +      + G T+    L     
Sbjct: 117 QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 95.0 bits (237), Expect = 3e-22
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 190 PARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 248
           P   G  S     +          ++      F  +      L  +      D+V  +I 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 249 --PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
              DPS+    +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    
Sbjct: 59  EVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCN 114

Query: 307 NTELFSLLKEAGA 319
           N ++   L E+GA
Sbjct: 115 NVQVCKFLVESGA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 82.3 bits (204), Expect = 7e-18
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 19/168 (11%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +   P   G   LH A  AG+   +++ L     N     ++  + +G TPL+ AA   +
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTE-IVKFLVQFGVN-----VNAADSDGWTPLHCAASCNN 115

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSF-----HVAAKQGHL-VVKALVSKDPSTGFRTDK 225
             + + +++      A++ A    D           ++G+    + L       G   +K
Sbjct: 116 VQVCKFLVES----GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG-IMNK 170

Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 273
               AL         D  L +   D   +   +++       A    +
Sbjct: 171 GVIYALWDY--EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 9/122 (7%), Positives = 25/122 (20%), Gaps = 28/122 (22%)

Query: 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
                 +           G      + L           +   N+     L+        
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQ-CSQFLYGVQEK-----MGIMNKGVIYALWDYEPQNDD 185

Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALH 232
               E+                 D   +  ++    ++   ++        DK+G    +
Sbjct: 186 ----ELPMKEG------------DCMTIIHREDEDEIEWWWAR------LNDKEGYVPRN 223

Query: 233 MA 234
           + 
Sbjct: 224 LL 225

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  119 bits (300), Expect = 8e-30
 Identities = 51/210 (24%), Positives = 77/210 (36%), Gaps = 42/210 (20%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
                G+    +L  AAR+GN  ++M +L   + N         +    TPL++AA    
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-----CHASDGRKSTPLHLAAGYNR 70

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTAL 231
             IV+ +LQH            G D   V AK                    DK G   L
Sbjct: 71  VRIVQLLLQH------------GAD---VHAK--------------------DKGGLVPL 95

Query: 232 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 291
           H A    + ++   L++    V    D    T LH A  K R ++   LLS  G D   +
Sbjct: 96  HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLV 153

Query: 292 NKAGESPLDVAEKLGNTELFSLLKEAGAAH 321
           N  G+S +D+A      E  +   +  +  
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLL 183

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  118 bits (298), Expect = 2e-29
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 25/199 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH AA    +  V  +L S  A+      +  N  G++ + +A        +    +  +
Sbjct: 128 LHEAASKNRV-EVCSLLLSHGAD-----PTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK---GQNE 240
           L                A +     VK  ++ +    F+  +  +TALH AV     + +
Sbjct: 182 L-------------LQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRK 227

Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
            +   L+R   +V   ++    T LH+A ++    ++  L    G  +N+L+  G++ L 
Sbjct: 228 QVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALH 285

Query: 301 VAEKLGNTELFSLLKEAGA 319
            A   G+ +   LL   G+
Sbjct: 286 RAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.2 bits (212), Expect = 3e-18
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 27/156 (17%)

Query: 124 LHLAARAG--NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
           LH A  +      +V E+L    AN     +++KN++  TPL+VAAE  H  ++E + +H
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGAN-----VNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269

Query: 182 MNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVK 236
                A + A +  G  + H AA  GHL   + L+S   DPS       +G TA  M   
Sbjct: 270 ----GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS---IISLQGFTAAQMGN- 321

Query: 237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272
               + V +++     + +  D   +  L  A K G
Sbjct: 322 ----EAVQQILSESTPM-RTSDV--DYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284
           + G++AL +A       +               + K +  L  A      +++  L    
Sbjct: 2   EFGKSALDLADPSAKAVLT-------------GEYKKDELLEAARSGNEEKLMALLTP-L 47

Query: 285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 324
            ++ ++ +    +PL +A       +  LL + GA  H+KD
Sbjct: 48  NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             ++    G   LH AA AG+L     +L S  ++      S  + +G T   +  E   
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQ-TCRLLLSYGSD-----PSIISLQGFTAAQMGNE--- 322

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG 205
              V+++L      +  +   +       A+K G
Sbjct: 323 --AVQQILSE----STPMRTSDVDYRLLEASKAG 350

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  111 bits (280), Expect = 7e-29
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 14/170 (8%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKA 211
            N E +  L  AA++G    V+++    +    +     G  S   H AA    + VV+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQS---VNCRDIEGRQSTPLHFAAGYNRVSVVEY 60

Query: 212 LVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           L+    D       DK G   LH A    + ++   L++    V  + D    T LH A 
Sbjct: 61  LLQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAA 116

Query: 270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            KG+ +I + LL   G D    N+ G +PLD+ +  G+T++  LL+   A
Sbjct: 117 AKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 21/130 (16%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH AA    +S V+E L    A+  AKD      + G  PL+ A   GH  + E +++H 
Sbjct: 46  LHFAAGYNRVS-VVEYLLQHGADVHAKD------KGGLVPLHNACSYGHYEVAELLVKH- 97

Query: 183 NLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
               A +   +   +   H AA +G   + K L+    DP+   + ++ G T L +   G
Sbjct: 98  ---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 151

Query: 238 QNEDIVLELI 247
            + DI   L 
Sbjct: 152 -DTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.1 bits (147), Expect = 6e-11
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
           +++ +  L  A K G  + V+ L +++ ++   +     +PL  A       +   L + 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 318 GA-AHSKD-HGKPP 329
           GA  H+KD  G  P
Sbjct: 65  GADVHAKDKGGLVP 78

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (279), Expect = 8e-29
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           R   +L  AA  G++  V  +L     +         N+ G+T L V    G   I  E+
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMF-GSTAIALEL 54

Query: 179 LQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHM 233
           L+      AS   +  +G    H AA+ G L  +K LV    D +     D  G   +H+
Sbjct: 55  LKQ----GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHL 107

Query: 234 AVKGQNEDIVLELI-RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           AV+  +  +V  L    D       D +G T L +A+++G   +V  L  
Sbjct: 108 AVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 85.2 bits (212), Expect = 9e-20
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 199 HVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 257
             AA +G +  V+ L+ ++       ++ G+TAL + + G +  I LEL++   S   ++
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASP-NVQ 64

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
           D  G + +H A + G    ++ L+   G DVN  +  G  P+ +A + G+T + S L   
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 318 GAAHSKDH 325
              H +D 
Sbjct: 124 SDLHRRDA 131

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.2 bits (168), Expect = 7e-14
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 285
           +    L  A    +   V  L+  +       +  G TAL + +  G T I   LL  +G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK-QG 58

Query: 286 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              N  + +G SP+  A + G  +   +L E GA
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           +    L  A  +G  Q VR LL  E +  ++LN+ G++ L V    G+T +   L + GA
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 320 -AHSKD 324
             + +D
Sbjct: 60  SPNVQD 65

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.9 bits (123), Expect = 9e-08
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + + P   G L +HLA + G+ + V+  L + +++     L +++  G TPL +A + G 
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTA-VVSFLAA-ESD-----LHRRDARGLTPLELALQRGA 145

Query: 172 ALIVEEMLQHM 182
             +V+ +  HM
Sbjct: 146 QDLVDILQGHM 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  113 bits (284), Expect = 1e-28
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 36/231 (15%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
              G ++  +  + G+            A+           E ETP + AA       + 
Sbjct: 12  AGEGAMEYLIEWKDGHSP-SWVPSSYIAAD--------VVSEYETPWWTAARKADEQALS 62

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAV 235
           ++L+  +++       NG  +    A  G    V+ L         R  + G TALHMA 
Sbjct: 63  QLLEDRDVDAVD---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119

Query: 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS------------- 282
                ++V  L+     + ++ED +G TAL +A +  +T      +              
Sbjct: 120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV 178

Query: 283 --------IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA-HSKD 324
                    E  ++      G+    +       +   +     A   +KD
Sbjct: 179 LEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (281), Expect = 4e-28
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 148 AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207
            K + S+   EG     +  + GH+              A + +      +  AA++   
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVS-EYETPWWTAARKADE 58

Query: 208 -VVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 265
             +  L+   D       D+ G+TAL       ++  V  L      +   +   G TAL
Sbjct: 59  QALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115

Query: 266 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           H+A    R ++V  L+   G D+   ++ G + L++A ++  T       + G 
Sbjct: 116 HMAAGYVRPEVVEALVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  102 bits (256), Expect = 1e-24
 Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 44/206 (21%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
              AAR  +   + ++L+  D +         ++ G T L   A  G    V  + +   
Sbjct: 49  WWTAARKADEQALSQLLEDRDVDA-------VDENGRTALLFVAGLGSDKCVRLLAEA-- 99

Query: 184 LETASIPARNGYDSF---HVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
              A +  R+        H+AA      VV+ALV    D       D++G TAL +A + 
Sbjct: 100 --GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE---VEDERGLTALELAREI 154

Query: 238 QNEDIVLELI---------------------RPDPSVLKLEDNKGNTALHIAIKKGRTQI 276
                    +                       +   +  +  KG    ++   K     
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 277 VRCLLSIEGIDVNSLNKAGESPLDVA 302
                     +     K  E  L+ A
Sbjct: 215 EWVKGV-HVAEDV--AKDYEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 32/164 (19%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDP 217
           GE    + + +                        G   + +  K GH            
Sbjct: 1   GEVNKIIGSRTAG---------------------EGAMEYLIEWKDGHSPSWVPSSYI-- 37

Query: 218 STGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQI 276
                   + +T    A +  +E  + +L+   D       D  G TAL      G  + 
Sbjct: 38  --AADVVSEYETPWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKC 92

Query: 277 VRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 319
           VR L    G D++  + + G + L +A      E+   L E GA
Sbjct: 93  VRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 34/156 (21%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH- 181
           LH+AA       V+E L    A+ E +D      + G T L +A E          +Q  
Sbjct: 115 LHMAAGYVRPE-VVEALVELGADIEVED------ERGLTALELAREILKTTPKGNPMQFG 167

Query: 182 --MNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
             + LE           +        +  V  +V K          KG+   ++      
Sbjct: 168 RRIGLE--------KVINVLEGQVFEYAEVDEIVEK--------RGKGKDVEYLVRWKDG 211

Query: 240 EDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGR 273
            D          +      +D +    L  A+ +  
Sbjct: 212 GDCEWVKGVHVAEDVA---KDYE--DGLEYAVAESV 242

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (277), Expect = 2e-28
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVS 214
                L  AA  G    +  +LQ+      ++ A+N  G  +  V    G+  + + L+ 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMK-LGNPEIARRLLL 58

Query: 215 K--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 272
           +  +P      D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G
Sbjct: 59  RGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEG 114

Query: 273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
             ++V  L+     +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           +H AARAG L   ++ L    A+     ++ ++ EG  PL++AA+ GH  +VE +++H  
Sbjct: 74  IHDAARAGFLD-TLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127

Query: 182 MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK 215
            N+   +     G  +  +A   G   VV  + + 
Sbjct: 128 SNVGHRN---HKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.6 bits (138), Expect = 9e-10
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
                  L  A  +G  + +  LL    ++VN+ N  G + L V  KLGN E+   L   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLR 59

Query: 318 GA 319
           GA
Sbjct: 60  GA 61

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 16/75 (21%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA---NEAKDLLSKKNQEGETPLYVA 166
            ++ +     G+L LHLAA+ G+L RV+E L    A            +N +G+T   +A
Sbjct: 98  IEDNE-----GNLPLHLAAKEGHL-RVVEFLVKHTASNVGH-------RNHKGDTACDLA 144

Query: 167 AESGHALIVEEMLQH 181
              G   +V  M  +
Sbjct: 145 RLYGRNEVVSLMQAN 159

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  112 bits (283), Expect = 2e-28
 Identities = 52/251 (20%), Positives = 80/251 (31%), Gaps = 50/251 (19%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAK--DLLSKKNQEGETPLYVAA---ESGHALIVEEM 178
           L      G    +  +L+    N     D    +   G+T L  A    + G    +  +
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 179 LQH-------MNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK------------D 216
           LQ          L  A        G+ + H+A ++  L  VK LV               
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 217 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALH-------- 266
                     G+  L +A   +  D+V  L+     P+ L+  D+ GNT LH        
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185

Query: 267 --------IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318
                   I +  G  Q+   L           N  G +PL +A K G  E+F  + +  
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 319 A----AHSKDH 325
                AH   H
Sbjct: 245 FSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 97.6 bits (243), Expect = 5e-23
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 30/177 (16%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKD-------LLSKKNQEGETPLYVAAES 169
            +G   LH+A    +L + +++L    A+   +                GE PL +AA +
Sbjct: 88  YQGHSALHIAIEKRSL-QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 170 GHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG 227
               +V  +L++ + + AS+ A    G    H                        +   
Sbjct: 147 KQWDVVTYLLENPH-QPASLEATDSLGNTVLHALVMIAD-----------------NSPE 188

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284
            +AL + +      +   L        ++ +++G T L +A K+G+ +I R +L  E
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 32/162 (19%)

Query: 106 GGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYV 165
           G   +K++ +    G+L L LAA       V+  L       A   L   +  G T L+ 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWD-VVTYLLENPHQPAS--LEATDSLGNTVLHA 178

Query: 166 AAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTD 224
                                          +  +    G L +   L          ++
Sbjct: 179 LVMIAD-------------------NSPENSALVIHMYDGLLQMGARLCPTVQLEE-ISN 218

Query: 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 266
            +G T L +A K    +I   +++         +  G  A H
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHILQ--------REFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 35/158 (22%)

Query: 196 DSFHVAAKQGHL-VVKALVSKDPSTG-------FRTDKKGQTALHMAVKGQN---EDIVL 244
           D       +G    +  L+              +     G+T L  AV          ++
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 245 ELIRPDPSVLKL----------EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN----- 289
            L++ D                E  +G++ALHIAI+K   Q V+ L+   G DV+     
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRACG 122

Query: 290 --------SLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
                   +    GE PL +A      ++ + L E   
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  110 bits (279), Expect = 2e-28
 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 39/223 (17%)

Query: 106 GGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYV 165
           G    KN +           +                        L + ++    TPL V
Sbjct: 1   GSHMDKNGEIV-------EKIKDEKSIN------------QNLDFLRNYRDSYNRTPLMV 41

Query: 166 AAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTG 220
           A   G    +++++++       +  ++  G  +   A K   L + + L+SK  + +T 
Sbjct: 42  ACMLGMENAIDKLVENF----DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT- 96

Query: 221 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIV 277
              D  G+T L  ++     ++   L+         +   + +G T L +A K GR++IV
Sbjct: 97  --KDFSGKTPLMWSIIFGYSEMSYFLL----EHGANVNDRNLEGETPLIVASKYGRSEIV 150

Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 320
           + LL + G D+++ +  G +    A   G  E+  +  E   A
Sbjct: 151 KKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  109 bits (275), Expect = 5e-28
 Identities = 21/193 (10%), Positives = 51/193 (26%), Gaps = 37/193 (19%)

Query: 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA-----KQGHL-VVK 210
                 +  AA  G      E+ +                +           +    +  
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 211 ALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL----------ED 258
            L++K  D  +     K+G T      +G   DI          + K+            
Sbjct: 60  FLINKGADIKS---RTKEGTTLFFPLFQGGGNDIT-----GTTELCKIFLEKGADITALY 111

Query: 259 NKGNTALHIAIKKG------RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
                 +   I            + + + S  G+ +   +K G + L+  ++        
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 313 LLKEAGA-AHSKD 324
           ++++     + K+
Sbjct: 172 MMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 21/144 (14%), Positives = 37/144 (25%), Gaps = 16/144 (11%)

Query: 191 ARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 247
           A + Y +   AA  G       L  K  +              L          I + LI
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE-----GIDVNSLNKAGESPLDVA 302
                + K    +G T      + G   I       +     G D+ +L K  +  +   
Sbjct: 63  NKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 303 EKLGNTELFS-------LLKEAGA 319
                 +          +  ++G 
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGL 145

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 8/76 (10%), Positives = 19/76 (25%), Gaps = 11/76 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSR------VMEILQSCDANEAKDLLSKKNQEGETPLYV 165
           +  +  K   + +        +           I            L  K++ G T L  
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-----LLIKDKWGLTALEF 160

Query: 166 AAESGHALIVEEMLQH 181
                  + ++ M  +
Sbjct: 161 VKRCQKPIALKMMEDY 176

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  109 bits (275), Expect = 5e-28
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 11/173 (6%)

Query: 149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL- 207
           K + S+   EG     +  + GH+              A + +      +  AA++    
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVS-EYETPWWTAARKADEQ 58

Query: 208 VVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 266
            +  L+   D       D+ G+TAL       ++  V  L      +   +   G TALH
Sbjct: 59  ALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115

Query: 267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           +A    R ++V  L+   G D+   ++ G + L++A ++  T       + G 
Sbjct: 116 MAAGYVRPEVVEALVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (270), Expect = 2e-27
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
              G ++  +  + G+            A+           E ETP + AA       + 
Sbjct: 11  AGEGAMEYLIEWKDGHSPSW-VPSSYIAAD--------VVSEYETPWWTAARKADEQALS 61

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAV 235
           ++L+  +++       NG  +    A  G    V+ L         R  + G TALHMA 
Sbjct: 62  QLLEDRDVDAVD---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118

Query: 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
                ++V  L+     + ++ED +G TAL +A +  +T      +   G  + 
Sbjct: 119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF-GRRIG 170

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  107 bits (271), Expect = 9e-28
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 44/192 (22%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AARAG     + IL +  A    D        G +PL++AA+ GH    E +L+   
Sbjct: 6   LLEAARAGQDD-EVRILMANGAPFTTD------WLGTSPLHLAAQYGHFSTTEVLLRA-- 56

Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
                     G       A+                     K  +T LHMA    + +IV
Sbjct: 57  ----------GVS---RDAR--------------------TKVDRTPLHMAASEGHANIV 83

Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 303
             L++    V   +D    TALH A +    ++V  L+   G DV++ +K  ++  D++ 
Sbjct: 84  EVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISI 141

Query: 304 KLGNTELFSLLK 315
             GN +L  +L+
Sbjct: 142 DNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 85.1 bits (212), Expect = 1e-19
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSKDPSTG--FRTDKKGQTALHMAVKGQNEDIVLELIRP 249
           +       AA+ G    V+ L++     G  F TD  G + LH+A +  +      L+R 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
             S          T LH+A  +G   IV  LL   G DVN+ +    + L  A +  + E
Sbjct: 57  GVSR-DARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQE 114

Query: 310 LFSLLKEAGA-AHSKD-HGKPP 329
           +  LL + GA  H++    K  
Sbjct: 115 VVELLIKYGADVHTQSKFCKTA 136

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.0 bits (196), Expect = 1e-17
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             D     G   LHLAA+ G+ S   E+L     +        + +   TPL++AA  GH
Sbjct: 29  TTD---WLGTSPLHLAAQYGHFS-TTEVLLRAGVS-----RDARTKVDRTPLHMAASEGH 79

Query: 172 ALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKK 226
           A IVE +L+H     A + A+      + H A +  H  VV+ L+    D  T     K 
Sbjct: 80  ANIVEVLLKH----GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT---QSKF 132

Query: 227 GQTALHMAVKGQNEDIV 243
            +TA  +++   NED+ 
Sbjct: 133 CKTAFDISIDNGNEDLA 149

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  113 bits (285), Expect = 1e-27
 Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 45/226 (19%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
             LAA  G+L  V+  L      EA  ++  +N       + A   GH  ++  +L   +
Sbjct: 167 FRLAAENGHLH-VLNRLCELAPTEATAMIQAEN--YYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 183 NLETASIPA-------------------RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT 223
            L  A I                     +  +D+F ++   G      LV+K        
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF---DLVTKSEC----- 275

Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE--------DNKGNTALHIAIKKGRTQ 275
             +G   L   ++ +N++++L+ IR   S+  ++            N  L +A++ G   
Sbjct: 276 -LQGFYMLRNLIR-RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 321
               LLSI  +    L     +   + E  G  +L ++  E    H
Sbjct: 334 ACALLLSIPSV----LALTKANNYYINETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  107 bits (268), Expect = 2e-25
 Identities = 43/264 (16%), Positives = 86/264 (32%), Gaps = 58/264 (21%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG 170
            +    G + ++   +AA  G  S + + L     ++   ++     E      +AAE+G
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSAL-DTLCLLLTSDE--IVKVIQAENYQAFRLAAENG 139

Query: 171 HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPS-TGFRTDKKGQ 228
           H  ++  + +    E  ++     Y +F +AA+ GHL V+  L    P+        +  
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199

Query: 229 TALHMAVKGQN-EDIVLELIRPDPSVLKLEDN---------------------KGNTALH 266
            A   A  G+   +++  L+     +   E +                     + + A  
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 259

Query: 267 IAIKKGRTQIV---------------------------RCLLSI----EGIDVNSLNKAG 295
           ++   G   +V                           R LLSI          ++    
Sbjct: 260 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 319

Query: 296 ESPLDVAEKLGNTELFSLLKEAGA 319
              L +A +LGN    +LL    +
Sbjct: 320 NELLRLALRLGNQGACALLLSIPS 343

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (266), Expect = 6e-27
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AARAG     + IL +  A+     ++ ++  G TPL++AA +GH  IVE +L++  
Sbjct: 18  LLEAARAGRD-DEVRILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLKN-- 69

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 238
              A + A +  G     +AA  GHL +V+ L+    D +     D +G T LH+A    
Sbjct: 70  --GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA---NDMEGHTPLHLAAMFG 124

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           + +IV  L++    V   +D  G TA  I+I  G   +   L  
Sbjct: 125 HLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (266), Expect = 8e-27
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL 207
                   +    L  AA +G    V  ++ +     A + A +  G+   H+AA  GHL
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMAN----GADVNAEDASGWTPLHLAAFNGHL 60

Query: 208 -VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 264
            +V+ L+    D +     D  G T L +A    + +IV  L++    V    D +G+T 
Sbjct: 61  EIVEVLLKNGADVNAV---DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTP 116

Query: 265 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
           LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 117 LHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 86.3 bits (215), Expect = 6e-20
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 249
           +       AA+ G    V+ L++   D +     D  G T LH+A    + +IV  L++ 
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
              V    D+ G T L +A   G  +IV  LL   G DVN+ +  G +PL +A   G+ E
Sbjct: 70  GADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLE 127

Query: 310 LFSLLKEAGA 319
           +  +L + GA
Sbjct: 128 IVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.1 bits (142), Expect = 3e-10
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
                 +     L  A + GR   VR L++  G DVN+ + +G +PL +A   G+ E+  
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 313 LLKEAGA 319
           +L + GA
Sbjct: 65  VLLKNGA 71

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
           LHLAA  G+L  ++E+L    A+     ++ +++ G+T   ++ ++G+  + E + + 
Sbjct: 117 LHLAAMFGHL-EIVEVLLKNGAD-----VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  105 bits (265), Expect = 3e-26
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 18/212 (8%)

Query: 103 FIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETP 162
            +      +          + L  AA  G L  V++       +      S+ N+EG T 
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELE-VVQQAVKEMND-----PSQPNEEGITA 57

Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSKDPST 219
           L+ A    +  IV+ ++       A++ + +  G+   H AA      +  ALV    + 
Sbjct: 58  LHNAICGANYSIVDFLITA----GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

Query: 220 GFRTDKKGQTALHMAVKGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
              T   G TA       +    D    L   + S+  L ++    AL     +     +
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEF-GDEL 171

Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
                 E + V   +   E+    A   G   
Sbjct: 172 SFREG-ESVTVLRRDGPEETDWWWAALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (259), Expect = 2e-25
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 21/197 (10%)

Query: 137 MEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN-- 193
           M  +     +        +        L  AA +G   +V++ ++ M          N  
Sbjct: 1   MRSVLRKAGSPRKAR---RARLNPLVLLLDAALTGELEVVQQAVKEM----NDPSQPNEE 53

Query: 194 GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 250
           G  + H A    +  +V  L++   + +     D  G T LH A    +  I + L++  
Sbjct: 54  GITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHG 110

Query: 251 PSVLKLEDNKGNTALHIA--IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 308
            ++     + G TA       ++G       L  +    +  +N      L         
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGD 169

Query: 309 ELFSLLKEAGA-AHSKD 324
           EL S  +        +D
Sbjct: 170 EL-SFREGESVTVLRRD 185

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A    N S +++ L +  AN     ++  +  G TPL+ AA     +I   ++QH  
Sbjct: 58  LHNAICGANYS-IVDFLITAGAN-----VNSPDSHGWTPLHCAASCNDTVICMALVQH-- 109

Query: 184 LETASIPARNGYD---SFHVAA--KQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKG 237
              A+I A    D   +F      ++G+      L   + S G   +     AL      
Sbjct: 110 --GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAVYALWDYSAE 166

Query: 238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
              D +        +VL+  D    T    A   G+   V
Sbjct: 167 -FGDELSFREGESVTVLR-RDGPEETDWWWAALHGQEGYV 204

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  105 bits (264), Expect = 1e-25
 Identities = 40/258 (15%), Positives = 77/258 (29%), Gaps = 48/258 (18%)

Query: 107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK--DLLSKKNQEGETPLY 164
              +K      +R    +  A    N   +  +L     ++ +  D   K  + G+T L 
Sbjct: 3   SAGEKPPRLYDRR---SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLL 59

Query: 165 VA---AESGHALIVEEMLQH-------MNLETASIPARNGYDS--FHVAAKQGHL-VVKA 211
            A     +G    +  +L              AS            H+A ++ ++ +V  
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 212 LVS-------KDPSTGFRT------DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKL 256
           LV              F+          G+  L +A       IV  L++    P+ +  
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179

Query: 257 EDNKGNTALHIAIKKGRTQIVRCLLSIE---------------GIDVNSLNKAGESPLDV 301
            D+ GNT LH  ++     +                              N+ G +PL +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

Query: 302 AEKLGNTELFSLLKEAGA 319
           A   G   + + + +   
Sbjct: 240 AASSGKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 93.3 bits (232), Expect = 2e-21
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 54/226 (23%)

Query: 124 LHLA---ARAGNLSRVMEIL--QSCDANEAKDLL----SKKNQEGETPLYVAAESGHALI 174
           L  A      G     + +L   +   +  K  +    +    +G+T L++A E  +  +
Sbjct: 58  LLKAMLNLHNGQN-DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 175 VEEMLQH------------MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK-----D 216
           V  ++++                        G     +AA    L +VK L+       D
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 217 PSTGFRTDKKGQTALHMAVKGQNEDIVLEL---------------IRPDPSVLKLEDNKG 261
            S     D  G T LH  V+  +  +                   + P   + ++ + KG
Sbjct: 177 IS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233

Query: 262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
            T L +A   G+  ++  +L    I               A    +
Sbjct: 234 LTPLALAASSGKIGVLAYILQ-REIH-------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 26/152 (17%)

Query: 105 GGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLY 164
           G   +K         G+L L LAA    L+ +++ L       A   +S ++  G T L+
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLA-IVKFLLQNSWQPAD--ISARDSVGNTVLH 189

Query: 165 VAAESGHALIVEEMLQ--------------HMNLETASIPARNGYDSFHVAAKQGHL-VV 209
              E     +                    H  L+   I  R G     +AA  G + V+
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249

Query: 210 KALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
             ++ ++               H A    +  
Sbjct: 250 AYILQRE--------IHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 104 IGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSC----------DANEAKDLLS 153
           +    +  +  +    G+  LH      + +       +             +    L  
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
             N++G TPL +AA SG   ++  +LQ            +  +  H AA   H
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYILQR---------EIHEPECRHAAAHHHH 271

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (256), Expect = 5e-25
 Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 19/222 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
            +LA   G L  + E + +  +       ++ +Q+  T L+ A  +GH  IVE +LQ   
Sbjct: 11  CNLAYS-GKLDELKERILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLLQL-- 62

Query: 184 LETASIPAR--NGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240
                +  +   G+   H+AA  G   +VKAL+ K        ++ G T LH A      
Sbjct: 63  --GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRH 119

Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
           +I + L+    +    +D+   TA+H A  KG  ++V  LL       N  +  G +PL 
Sbjct: 120 EIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLH 177

Query: 301 VAEKLGNTELFSLLKEAGA---AHSKDHGKPPSATKQLKQTV 339
           +A      E    L   GA     +K+   P    K     +
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.3 bits (224), Expect = 9e-21
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 14/171 (8%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVK 210
           +          +A       + E +L       +     +     + H A   GH  +V+
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILAD----KSLATRTDQDSRTALHWACSAGHTEIVE 57

Query: 211 ALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
            L+      +     D  G + LH+A     ++IV  L+     V    +  G T LH A
Sbjct: 58  FLLQLGVPVND---KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYA 113

Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
             K R +I   LL   G + ++ +    + +  A   GN ++  +L    A
Sbjct: 114 ASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 37/165 (22%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVS 214
            N  GET L++A+  G    VE +LQ+            G D      K           
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQN------------GSD---PNVK----------- 39

Query: 215 KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 274
                    D  G T LH A    +  +V  L++    V      + ++ LH A K G  
Sbjct: 40  ---------DHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHV 89

Query: 275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            IV+ LLS  G   N++N  G  P+D  +      L  L ++  +
Sbjct: 90  DIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG 170
              +    RG+  LH+A+  G++   +E L    ++      + K+  G TPL+ A   G
Sbjct: 4   PFTN---HRGETLLHIASIKGDIP-SVEYLLQNGSD-----PNVKDHAGWTPLHEACNHG 54

Query: 171 HALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKALVSK--DPSTGFRTDK 225
           H  +VE +LQH     A +      +    H AAK GH+ +VK L+S     +     + 
Sbjct: 55  HLKVVELLLQH----KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN---AVNI 107

Query: 226 KGQTALHMAVKGQNEDIVLELIR 248
            G   +        + ++L   +
Sbjct: 108 FGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             ++ G + D  LH AA+ G++  ++++L S  A+      +  N  G  P+    +   
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVD-IVKLLLSYGAS-----RNAVNIFGLRPVDYTDDESM 121

Query: 172 ALIVEEMLQHMNLETA 187
             ++    ++ +   +
Sbjct: 122 KSLLLLPEKNESSSAS 137

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.5 bits (248), Expect = 1e-23
 Identities = 46/253 (18%), Positives = 82/253 (32%), Gaps = 53/253 (20%)

Query: 124 LHLAARAGN---LSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAA---ESGHALIVE 176
           L      G+   L  ++  L +       ++   ++   G+T L  A     +G    + 
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEF--REPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 177 EMLQH--MNLETASIPARNGYDSF-------HVAAKQGHL-VVKALVS-------KDPST 219
            +L                  D +       H+A ++     V+ LV        +    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 220 GFRTDKK------GQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAI-- 269
            F+   +      G+  L +A       IV  L       + L+ +D++GNT LH  +  
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 270 -------KKGRTQIVRCLLSIEGIDVNS-------LNKAGESPLDVAEKLGNTELFSLLK 315
                   K  T++   LL  +   +         LN  G SPL +A K G   +F  + 
Sbjct: 187 ADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

Query: 316 EAGAA--HSKDHG 326
               A   +  H 
Sbjct: 246 RREIADAAAHHHH 258

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.0 bits (240), Expect = 2e-23
 Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 24/161 (14%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHL-VVKA 211
             +     L  AA  G    V  +L+      A+  A N Y      V    G   V + 
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAEL 62

Query: 212 LVSK--DPSTGFRTDKKGQT-ALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALH 266
           L+    +P+     D    T  +H A +    D ++ L R      V    D  G   + 
Sbjct: 63  LLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVD 116

Query: 267 IAIKKGRTQIVRCLLSIEGIDVNSLNK----AGESPLDVAE 303
           +A + G   + R L +         N     A E P D+ +
Sbjct: 117 LAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 95.2 bits (238), Expect = 3e-23
 Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 17/148 (11%)

Query: 187 ASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 243
           A        D    AA +G +  V+AL+    +P+     +  G+  + + + G +  + 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVMMMG-SARVA 60

Query: 244 LELIRP--DPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
             L+    +P+     D    T  +H A ++G    +  L    G  ++  +  G  P+D
Sbjct: 61  ELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVD 116

Query: 301 VAEKLGNTELFSLLKEAGA---AHSKDH 325
           +AE+LG+ ++   L+ A       +   
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSNHAR 144

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +H AAR G L   + +L    A      L  ++  G  P+ +A E GH  +   +     
Sbjct: 82  VHDAAREGFLD-TLVVLHRAGAR-----LDVRDAWGRLPVDLAEELGHRDVARYLRAAA- 134

Query: 184 LETASIPARNGYDSFHVAAKQGHL 207
                     G +   + A +G  
Sbjct: 135 ---GGT---RGSNHARIDAAEGPS 152

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 92.8 bits (232), Expect = 9e-23
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 14/133 (10%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 249
           NG    H+AA+ GHL VVK L+    D +     DK G+T LH+A +  + ++V  L+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLL-- 55

Query: 250 DPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
                  +  +D  G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G
Sbjct: 56  --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG 112

Query: 307 NTELFSLLKEAGA 319
           + E+  LL EAGA
Sbjct: 113 HLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 87.4 bits (218), Expect = 7e-21
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 13/129 (10%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK 215
           G TPL++AA +GH  +V+ +L+      A + A++  G    H+AA+ GHL VVK L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 216 --DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 273
             D +     DK G+T LH+A +  + ++V  L+     V   +D  G T LH+A + G 
Sbjct: 58  GADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGH 113

Query: 274 TQIVRCLLS 282
            ++V+ LL 
Sbjct: 114 LEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 82.0 bits (204), Expect = 6e-19
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 20/130 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LHLAAR G+L  V+++L    A+  AKD      + G TPL++AA +GH  +V+ +L+  
Sbjct: 6   LHLAARNGHL-EVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKLLLEA- 57

Query: 183 NLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
               A + A++  G    H+AA+ GHL VVK L+    D +     DK G+T LH+A + 
Sbjct: 58  ---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGRTPLHLAARN 111

Query: 238 QNEDIVLELI 247
            + ++V  L+
Sbjct: 112 GHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.5 bits (156), Expect = 1e-12
 Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 11/106 (10%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  K G   LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGH 80

Query: 172 ALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK 215
             +V+ +L+   ++       +NG    H+AA+ GHL VVK L+  
Sbjct: 81  LEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEA 123

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.8 bits (243), Expect = 2e-22
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL---IVEEMLQ 180
           LH      NL  +++ L    +N         +  GE+ L  A +S +       E +L 
Sbjct: 135 LHWLTSIANL-ELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 181 HM---------NLETA--SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT 229
           ++            T    I   +G      AAK    ++   + K  +   ++    + 
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 230 ALHMAVKGQNEDIVLELIRPDPSVLKL---EDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
           +      G+ +D +LE +     +  +   +D+ G+T L+IA + G   IV  LL   G 
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGA 307

Query: 287 DVNSLNKAGESPLDVA 302
           D    NK+G  P+D  
Sbjct: 308 DPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 95.5 bits (237), Expect = 9e-22
 Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 41/314 (13%)

Query: 26  EKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRG 85
                  R      +F  + T    S+   + K      V  ++Q        ++  F  
Sbjct: 15  NGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPE 74

Query: 86  FIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA 145
             E   S                   N++S G   + Q    +    L  V +   +   
Sbjct: 75  IQEMPTSLN-------------NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121

Query: 146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAK 203
               +L    ++ G TPL+      +  +V+ +++H     ++    +  G      A K
Sbjct: 122 ----NLNIPVDEHGNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVK 173

Query: 204 QGHL----VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE-----------DIVLELIR 248
             +       +AL+          D   +T LH  +                DI++  I 
Sbjct: 174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233

Query: 249 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE---GIDVNSLNKAGESPLDVAEKL 305
              +           +        R   +   L ++      +N+ +  G++ L++A +L
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 306 GNTELFSLLKEAGA 319
           GN  +   L + GA
Sbjct: 294 GNISIVDALLDYGA 307

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.6 bits (175), Expect = 9e-14
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 12/184 (6%)

Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL----- 207
           +  N     P+        +  +   L+ M    + +   N       A  Q  L     
Sbjct: 17  TDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQ 76

Query: 208 -VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 266
            +  +L +   +         Q   H++     +++         ++    D  GNT LH
Sbjct: 77  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLH 136

Query: 267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN---TELFSLLKEAGAA--H 321
                   ++V+ L+   G +    +  GES L  A K  N   +  F  L +       
Sbjct: 137 WLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195

Query: 322 SKDH 325
            +D 
Sbjct: 196 LEDS 199

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.2 bits (161), Expect = 5e-12
 Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 25/164 (15%)

Query: 124 LHLAARAGN---LSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH--------- 171
           L  A ++ N         +L           L  ++    T L+    +           
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPC-----LILEDSMNRTILHHIIITSGMTGCSAAAK 222

Query: 172 ---ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFR---TDK 225
               +++  +++  N    S          +    +    +   +             D 
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTN-EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
            G T L++A +  N  IV  L+        + +  G   +    
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES 169
           L++AAR GN+  +++ L    A+         N+ G  P+   A  
Sbjct: 287 LNIAARLGNI-SIVDALLDYGAD-----PFIANKSGLRPVDFGAGL 326

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 192 RNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 248
            +       AA +G +  V+ L+    DP+     ++ G+  + + + G +  +   L+ 
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMMMG-SAQVAELLLL 65

Query: 249 --PDPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 305
              +P+     D    T  +H A ++G    +  L    G  ++  +  G  P+D+AE+ 
Sbjct: 66  HGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQ 121

Query: 306 GNTELFSLLKEAGA 319
           G+ ++   L  A  
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.7 bits (229), Expect = 3e-22
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 15/135 (11%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVK 210
                 +  L  AA  G    V ++L+      A   A N  G     V    G   V +
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMM-MGSAQVAE 61

Query: 211 ALVSK--DPSTGFRTDKKGQT-ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
            L+    +P+     D    T  +H A +    D ++ L R    +  + D  G   + +
Sbjct: 62  LLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDL 117

Query: 268 AIKKGRTQIVRCLLS 282
           A ++G   I R L +
Sbjct: 118 AEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 82.5 bits (205), Expect = 5e-19
 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 20/142 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
                G   D  L  AA  G +   +  L    A+      +  N+ G  P+ V    G 
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVE-TVRQLLEAGAD-----PNALNRFGRRPIQVMMM-GS 56

Query: 172 ALIVEEMLQHMNLETASIPARNGYDS---FHVAAKQGHL-VVKALVSK--DPSTGFRTDK 225
           A + E +L H     A     +        H AA++G L  +  L             D 
Sbjct: 57  AQVAELLLLHG----AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---CDA 109

Query: 226 KGQTALHMAVKGQNEDIVLELI 247
            G+  + +A +  + DI   L 
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
           +H AAR G L   + +L    A      L   +  G  P+ +A E GH  I   +   
Sbjct: 82  VHDAAREGFLD-TLVVLHRAGAR-----LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.4 bits (223), Expect = 1e-21
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 249
                F  A K G L  VK  V+K  D +   RT + G+  LH A      +I+  L+  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 250 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
              +    D    T L  A+ +G    V+ LLS  G D       G +  +  +      
Sbjct: 63  GADINA-PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKA 120

Query: 310 L 310
           L
Sbjct: 121 L 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIV 175
           G   D +   A + G+L   ++   +   +           + G  PL+ AA+ G   I+
Sbjct: 4   GSMCDKEFMWALKNGDLD-EVKDYVAKGEDVNRTL------EGGRKPLHYAADCGQLEIL 56

Query: 176 EEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTA 230
           E +L       A I A +         A  +GH+  VK L+SK  D +        G TA
Sbjct: 57  EFLLLK----GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLTA 109

Query: 231 LHMAVKGQNEDIV 243
                    + ++
Sbjct: 110 FEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.9 bits (175), Expect = 4e-15
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
                       A+K  + D V + +     V       G   LH A   G+ +I+  LL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
              G D+N+ +K   +PL  A   G+     LL   GA
Sbjct: 61  LK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++P K     L  A   G++S  +++L S  A+      + K  +G T          
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVS-CVKLLLSKGAD-----KTVKGPDGLTAFEATDNQAI 118

Query: 172 ALIVE 176
             +++
Sbjct: 119 KALLQ 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.4 bits (210), Expect = 7e-20
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 187 ASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 243
               +++G    H AAK GH   VK L+SK  D +      K G T LH+A K  + +IV
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIV 58

Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 299
             L+     V       GNT  H+A K G  +IV+ L + +G DVN+ +       
Sbjct: 59  KLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.8 bits (180), Expect = 7e-16
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
            K G T LH A K  + + V +L+     V       GNT LH+A K G  +IV+ LL+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            G DVN+ +K G +P  +A+K G+ E+  LL   GA
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.3 bits (176), Expect = 2e-15
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 18/114 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH AA+ G+    ++ L S  A+     ++ ++++G TPL++AA++GHA IV+ +L    
Sbjct: 13  LHNAAKNGHAE-EVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64

Query: 184 LETASIPARN--GYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALH 232
              A + AR+  G    H+A K GH  +VK L +K  D +             H
Sbjct: 65  --GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR---SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 59.3 bits (145), Expect = 4e-11
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 255 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 314
                 GNT LH A K G  + V+ LLS  G DVN+ +K G +PL +A K G+ E+  LL
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 315 KEAGA 319
              GA
Sbjct: 62  LAKGA 66

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 6e-07
 Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  K G+  LHLAA+ G+   ++++L +  A+     ++ ++++G TP ++A ++GH
Sbjct: 34  DVNARSKDGNTPLHLAAKNGHAE-IVKLLLAKGAD-----VNARSKDGNTPEHLAKKNGH 87

Query: 172 ALIVEEMLQH 181
             IV+ +   
Sbjct: 88  HEIVKLLDAK 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 201 AAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 259
            +   H      LV +    G          L  A +   +D V  L+     V   +D 
Sbjct: 1   GSSHHHHHHSSGLVPR----GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
            G+T LH+A + G  ++V+ LL   G DV + +K G++  D++   GN +L  +L+
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 166 AAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFR 222
            +   H      ++       + + + +       AA+ G    V+ L++   D +    
Sbjct: 1   GSSHHHHHHSSGLVPR----GSHMGS-DLGKKLLEAARAGQDDEVRILMANGADVAA--- 52

Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
            DK G T LH+A +  + ++V  L+     V   +D  G TA  I+I  G   +   L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNLE 185
            +   +       L    ++           +    L  AA +G    V  ++ +  ++ 
Sbjct: 1   GSSHHHHH-HSSGLVPRGSH--------MGSDLGKKLLEAARAGQDDEVRILMANGADVA 51

Query: 186 TASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDI 242
                 +NG    H+AA+ GHL VVK L+    D       DK G+TA  +++   NED+
Sbjct: 52  AKD---KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ---DKFGKTAFDISIDNGNEDL 105

Query: 243 V 243
            
Sbjct: 106 A 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
            +     L  A + G+   VR L++  G DV + +K G +PL +A + G+ E+  LL EA
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 318 GA 319
           GA
Sbjct: 80  GA 81

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 14/93 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           L  AARAG     + IL +  A+  AKD      + G TPL++AA +GH  +V+ +L+  
Sbjct: 28  LLEAARAGQDD-EVRILMANGADVAAKD------KNGSTPLHLAARNGHLEVVKLLLEA- 79

Query: 183 NLETASIPARN--GYDSFHVAAKQGHLVVKALV 213
               A + A++  G  +F ++   G+  +  ++
Sbjct: 80  ---GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.8 bits (206), Expect = 4e-19
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 184 LETASIPARNGYD---SFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKG 237
           +  +     +G D       AA+ G    V+ L++   D +     D+ G T L++A   
Sbjct: 1   MRGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA---KDEYGLTPLYLATAH 57

Query: 238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES 297
            + +IV  L++    V    D  G T LH+A   G  +I   LL   G DVN+ +K G++
Sbjct: 58  GHLEIVEVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKT 115

Query: 298 PLDVAEKLGNTELFSLL 314
             D++   GN +L  +L
Sbjct: 116 AFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 42/160 (26%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AARAG     + IL +  A+     ++ K++ G TPLY+A   GH  IVE +L++  
Sbjct: 18  LLEAARAGQDD-EVRILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKN-- 69

Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
                     G D   V A                     D  G T LH+A    + +I 
Sbjct: 70  ----------GAD---VNAV--------------------DAIGFTPLHLAAFIGHLEIA 96

Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
             L++    V   +D  G TA  I+I  G   +   L  +
Sbjct: 97  EVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.9 bits (157), Expect = 1e-12
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 286
               L  A +   +D V  L+     V   +D  G T L++A   G  +IV  LL   G 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71

Query: 287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           DVN+++  G +PL +A  +G+ E+  +L + GA
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.5 bits (130), Expect = 6e-09
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
                 +     L  A + G+   VR L++  G DVN+ ++ G +PL +A   G+ E+  
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 313 LLKEAGA 319
           +L + GA
Sbjct: 65  VLLKNGA 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 71.6 bits (177), Expect = 9e-16
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 13/96 (13%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 249
           NG    H+AA+ GHL VVK L+    D +     DK G+T LH+A +  + ++V  L+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLL-- 55

Query: 250 DPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
                  +  +D  G T LH+A + G  ++V+ LL 
Sbjct: 56  --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.5 bits (169), Expect = 1e-14
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 8/96 (8%)

Query: 227 GQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
           G+T LH+A +  + ++V  L+         +  +D  G T LH+A + G  ++V+ LL  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56

Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
            G DVN+ +K G +PL +A + G+ E+  LL EAGA
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 1e-13
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 12/94 (12%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKALVSK 215
           G TPL++AA +GH  +V+ +L+      A + A++  G    H+AA+ GHL VVK L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 216 --DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 247
             D +     DK G+T LH+A +  + ++V  L+
Sbjct: 58  GADVNAK---DKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.9 bits (157), Expect = 5e-13
 Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 13/95 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH  +V+ +L+   
Sbjct: 6   LHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57

Query: 184 LETASIPAR--NGYDSFHVAAKQGHL-VVKALVSK 215
              A + A+  NG    H+AA+ GHL VVK L+  
Sbjct: 58  --GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 4e-07
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  K G   LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGH 80

Query: 172 ALIVEEMLQH 181
             +V+ +L+ 
Sbjct: 81  LEVVKLLLEA 90

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 77.0 bits (189), Expect = 9e-16
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 223 TDKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
             +  +TALH+AV+  +   +  ++ +  +   L  +  KG+TALH        + +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KL 223

Query: 281 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 325
           L      +   N++GE+PLD+A++L +     LL +A +     H
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 37/161 (22%)

Query: 123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
            L  A +  ++  +++          K  L+  ++  ET L++A  S     +  ++  +
Sbjct: 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH-IVDFL 191

Query: 183 NLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
              + ++  +                                 KG TALH      N + 
Sbjct: 192 VQNSGNLDKQ-------------------------------TGKGSTALHYCCLTDNAEC 220

Query: 243 VLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
           +  L+R      +    +  G T L IA +         L 
Sbjct: 221 LKLLLRGKASIEIA---NESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH      N    +++L    A+     +   N+ GETPL +A    H    E + Q ++
Sbjct: 209 LHYCCLTDNAE-CLKLLLRGKAS-----IEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.7 bits (178), Expect = 3e-14
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 226 KGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 283
             +  LH+AVK  N+    +++ I  +   L  +   GNTALH A    +   ++ LL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
               V ++N+AGE+ LD+A K  + E   LL++A
Sbjct: 249 -RALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 43/177 (24%)

Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
            +            +L  A    +L  V+E   +                 E  L++A +
Sbjct: 140 VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 199

Query: 169 SGHA---LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK 225
             +     +V+ ++Q+       + A+                                 
Sbjct: 200 VANQASLPLVDFIIQNG----GHLDAK-------------------------------AA 224

Query: 226 KGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
            G TALH A      D +  L++       +   +  G TAL IA KK   +    L
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTV---NEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 45/150 (30%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
            +L LHLA +  N + +  ++     N     L  K  +G T L+ AA       ++ +L
Sbjct: 190 EELVLHLAVKVANQASLP-LVDFIIQNGGH--LDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
           +                             +ALV          ++ G+TAL +A K  +
Sbjct: 247 KG----------------------------RALVGT-------VNEAGETALDIARKKHH 271

Query: 240 EDIVLELIRPDPSVLKLEDNKGNTALHIAI 269
           ++   EL+       + +       LH+  
Sbjct: 272 KECE-ELLE------QAQAGTFAFPLHVDY 294

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 260 KGNTALHIAIKKGRTQIVR--CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
                LH+A+K      +     +   G  +++    G + L  A      +   LL + 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 318 GAAHSKDHGKPPSATKQLKQTVSDI 342
            A              +  +T  DI
Sbjct: 249 RA--------LVGTVNEAGETALDI 265

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 4/153 (2%)

Query: 206 HLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 265
             +  AL            +   T L  A    +      L++   +V    D+ G   L
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL 272

Query: 266 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 324
           H A   G T +    L   G D+ + +  G  PL +A +  N ++ +LL+ A        
Sbjct: 273 HHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331

Query: 325 HGKPPSAT-KQLKQTVSDIKHDVQSQLQQSRQT 356
            G+    T   + +  S +  D   +L +    
Sbjct: 332 QGQAGDETYLDIFRDFSLMASDDPEKLSRRSHD 364

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 14/185 (7%)

Query: 67  IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHL 126
           + K P  RG    +   RG          +  R  S     E           G L    
Sbjct: 148 LTKLPEIRGRRGGRGRPRG-QPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRA 206

Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
           +    +L  + + L    A+ A        Q+  TPL  A  +   L  E +LQ+     
Sbjct: 207 SGHPPSLPTMADAL----AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG---- 258

Query: 187 ASIPAR--NGYDSFHVAAKQGH-LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
           A++      G    H A   GH  +    + +    G R D +G+  L +A++  N DIV
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIV 317

Query: 244 LELIR 248
             L+R
Sbjct: 318 -TLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           N +     G   LH A   G+ + +  +     A+     L  ++ EG  PL +A E+ +
Sbjct: 260 NVNQADSAGRGPLHHATILGH-TGLACLFLKRGAD-----LGARDSEGRDPLTIAMETAN 313

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSF 198
           A IV  +      E  +   + G +++
Sbjct: 314 ADIVTLLRLAKMREAEAAQGQAGDETY 340

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 31/162 (19%), Positives = 49/162 (30%), Gaps = 41/162 (25%)

Query: 123 QLHLAARAGNLSRVMEIL-QSCDANEAKDLLSKKNQEGETPLYVA---AESGHALIVEEM 178
           +L  A    +L  V+E      D  +            E  L++A   A      +V+ +
Sbjct: 135 RLWTAICNRDLLSVLEAFANGQDFGQ-PLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 193

Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
           +Q+       + A+                                  G TALH A    
Sbjct: 194 IQNG----GHLDAK-------------------------------AADGNTALHYAALYN 218

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
             D +  L++    V    +  G TAL IA KK   +    L
Sbjct: 219 QPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 49/410 (11%), Positives = 113/410 (27%), Gaps = 117/410 (28%)

Query: 1   MIMEKQSSFRARTMEKQQSI--RSVT-FEKQPSIRRVMEKQQSFN----------GEST- 46
           M+       R R     Q     +V+  +    +R+ + + +             G++  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 47  ------DKPPSALGPMEKQQSFHG--VTIDKQPSTRGVMEKQKSFRGFIEKQKSFRV-VM 97
                          ++ +  F    + +    S   V+E  +     I+   + R    
Sbjct: 167 ALDVCLSYK------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 98  ER-QLSFIGGGERKKN--KDSPGKRG-----DLQLHLAARAGNL-------SRVMEILQS 142
              +L         +   K  P +       ++Q   A  A NL       +R  ++   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 143 CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML-QHMNLETASIPARNGYDSFHVA 201
             A     +    +    TP     E       + +L ++++     +P           
Sbjct: 281 LSAATTTHISLDHHSMTLTP----DEV------KSLLLKYLDCRPQDLPRE--------- 321

Query: 202 AKQGH-LVVK---ALVSKDPST--GFR---TDKKGQTALHMAVKGQNEDIVLELIRPDPS 252
               +   +      +    +T   ++    DK   T +  ++         ++     S
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFD-RLS 379

Query: 253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 312
           V            HI         +  L+  + I            + V  KL     +S
Sbjct: 380 VFP-PS------AHIPTI------LLSLIWFDVIK--------SDVMVVVNKLHK---YS 415

Query: 313 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHK 362
           L++                 KQ K++   I   +  +L+   +  + +H+
Sbjct: 416 LVE-----------------KQPKESTISI-PSIYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 48/454 (10%), Positives = 130/454 (28%), Gaps = 130/454 (28%)

Query: 138 EILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197
           +IL   +     +   K  Q+    +    E      ++ ++   +  + +         
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEE------IDHIIMSKDAVSGT------LRL 67

Query: 198 FHVAAKQGHLVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 255
           F     +   +V+  V +    +  F         L   +K +     +          +
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKF---------LMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 256 L-EDNKGNTALHIAIKKGRTQIVRCLLSI---EGIDVNSLNKAGESPLDVAEKLGNTELF 311
           L  DN+     +++  +   ++ + LL +   + + ++ +  +G++ +   +   + ++ 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKV- 176

Query: 312 SLLKEAGAAH----SKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKL 367
              K             +  P +  + L++ +  I  +  S+   S     ++H I  +L
Sbjct: 177 -QCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 368 KKL-HISGLNNA------INSSTVVA-------VLIAT----VAFAAIFTVPGQY-VEEK 408
           ++L       N       + ++           +L+ T    V             ++  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 409 TEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLM 468
           +   +  +                  +L                    K           
Sbjct: 295 SMTLTPDE----------------VKSLL------------------LK----------- 309

Query: 469 WLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTI--MLTTIGSMCYCVILHRMEAKK 526
                ++      L   V+  +     +S  +I  +I   L T  +         +   K
Sbjct: 310 -----YLDCRPQDLPREVLTTNP--RRLS--IIAESIRDGLATWDN------WKHVNCDK 354

Query: 527 LRNIRKAESRSRSFSMSVASDQEILNS-EYKRMY 559
           L  I +          S+     +L   EY++M+
Sbjct: 355 LTTIIE---------SSL----NVLEPAEYRKMF 375

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	561
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.4e-37  Score=306.61  Aligned_cols=217  Identities=24%  Similarity=0.282  Sum_probs=189.9

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (561)
Q Consensus       113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~  192 (561)
                      ++..|..|+||||+||..|+.++|++|++.+...   ..++.+|..|.||||+|+..|+.++|++|+++  +.+++..+.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~   76 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAER   76 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCC
Confidence            4578999999999999999999999999985532   34789999999999999999999999999998  678889999


Q ss_pred             CCCcHHHHHHHcCHHHHHHHHhcCCCC-----------------------------------------------ccccCC
Q 008557          193 NGYDSFHVAAKQGHLVVKALVSKDPST-----------------------------------------------GFRTDK  225 (561)
Q Consensus       193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~-----------------------------------------------~~~~d~  225 (561)
                      .|.||||+|+..|+..+.++|...+..                                               .+..|.
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence            999999999999999998888876543                                               456788


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCccccccc-CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  304 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~  304 (561)
                      .|+||||+|+..|+.+++++|++.|+++ +.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALL  234 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHT
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHH
Confidence            9999999999999999999999999998 77775 59999999999999999999999 799999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          305 LGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       305 ~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      .++.+++++|+++|++++..+..+.+|.....
T Consensus       235 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             SSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             cCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence            99999999999999999999999888876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8e-37  Score=300.49  Aligned_cols=216  Identities=21%  Similarity=0.242  Sum_probs=165.2

Q ss_pred             CCCCCCCCCChHHHHHHHcC-------------CHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHH
Q 008557          112 NKDSPGKRGDLQLHLAARAG-------------NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM  178 (561)
Q Consensus       112 ~~~~~~~~G~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~L  178 (561)
                      ++|.+|.+|+||||+|+..|             +.++++.|++.+..     ..+..|..|.||||+|+..|+.++|++|
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCC-----cccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            57889999999999999987             89999999988652     2455689999999999999999999999


Q ss_pred             HhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCC-CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCccccc
Q 008557          179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE  257 (561)
Q Consensus       179 L~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~  257 (561)
                      +++  +.+++..|..|.||||+|+..|+..+.++|...+. +.+..|..|.||||+|+..|+.+++++|++.++++ +.+
T Consensus        77 l~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~  153 (253)
T 1yyh_A           77 LEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAV  153 (253)
T ss_dssp             HHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCB
T ss_pred             HHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCc
Confidence            998  67888899999999999999999988888777665 78888999999999999999999999999999887 899


Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       258 d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      |..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus       154 d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          154 DDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ  231 (253)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence            9999999999999999999999999 79999999999999999999999999999999999999988888988886654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-36  Score=296.75  Aligned_cols=250  Identities=20%  Similarity=0.216  Sum_probs=214.7

Q ss_pred             CCCccccccc--ccccccC-CCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHc
Q 008557           54 GPMEKQQSFH--GVTIDKQ-PSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARA  130 (561)
Q Consensus        54 g~~e~~~~~~--~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~  130 (561)
                      |+.+.++.+.  +..++.. +..+.++++.+...|+.+..+.+.             +.+++++.+|..|.||||+|+..
T Consensus        16 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A           16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-------------RHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-------------HcCCCCcccCCCCCCHHHHHHHc
Confidence            4455555444  2334444 445568899999888876665443             45788999999999999999999


Q ss_pred             CCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC----------CCCCCcHHHH
Q 008557          131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP----------ARNGYDSFHV  200 (561)
Q Consensus       131 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~----------~~~g~tpLh~  200 (561)
                      |+.++++.|++++.      .++..|..|.||||+|+..|+.+++++|+++  +.+++..          +..|.||||+
T Consensus        83 ~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T 1wdy_A           83 GSVKLLKLFLSKGA------DVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             TCHHHHHHHHHTTC------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             CCHHHHHHHHHcCC------CCCccCcccCCHHHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHH
Confidence            99999999999854      4788899999999999999999999999998  4555555          7789999999


Q ss_pred             HHHcCHHHHHHHHhcC-CCCccccCCCCCcHHHHHHhCCC----HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          201 AAKQGHLVVKALVSKD-PSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       201 Aa~~g~~~v~~lL~~~-~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      |+..|+..+.++|... +.+++..|..|+||||+|+..++    .+++++|++.+.++ +.+|..|+||||+|+..|+.+
T Consensus       155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHH
Confidence            9999999888777765 88888999999999999999999    99999999999987 899999999999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccC
Q 008557          276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  325 (561)
Q Consensus       276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~  325 (561)
                      ++++|++..|++++.+|..|+||||+|+..++.+++++|+++|++++..+
T Consensus       234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            99999987899999999999999999999999999999999999987643

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.6e-35  Score=287.37  Aligned_cols=215  Identities=23%  Similarity=0.278  Sum_probs=201.1

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC
Q 008557          111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (561)
Q Consensus       111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~  190 (561)
                      .+++..|..|.||||+||..|+.+++++|++++.      .++..|..|.||||+|+..|+.+++++|+++  +.+++..
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~   73 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA------NIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPK   73 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC------CcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCC
Confidence            4677889999999999999999999999999854      4788899999999999999999999999998  6778889


Q ss_pred             CCCCCcHHHHHHHcCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHH
Q 008557          191 ARNGYDSFHVAAKQGHLVVKALVSKDP-STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  269 (561)
Q Consensus       191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~-~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa  269 (561)
                      +..|.||||+|+..|+..+.++|...+ ...+..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+
T Consensus        74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~  152 (237)
T 3b7b_A           74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAA  152 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHH
Confidence            999999999999999998888888776 788888999999999999999999999999999987 899999999999999


Q ss_pred             HhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       270 ~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      ..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++..+..+.+|....
T Consensus       153 ~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          153 FSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             HHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred             HCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            9999999999999 8999999999999999999999999999999999999999988898887653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.7e-36  Score=295.76  Aligned_cols=242  Identities=17%  Similarity=0.174  Sum_probs=182.3

Q ss_pred             cccCCCCcccccccchhhhhHHHH--HHHHHHHHHHhhhcCCCccCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 008557           67 IDKQPSTRGVMEKQKSFRGFIEKQ--KSFRVVMERQLSFIGGGERKKNKDS-PGKRGDLQLHLAARAGNLSRVMEILQSC  143 (561)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~  143 (561)
                      ++.++..+.++++.+...|.....  ..........+.+.  .+.+.+++. .|..|.||||+|+..|+.++|+.|++.+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~L--l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDF--IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHH--HHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            455667777888888877621000  00000011111111  144566644 5899999999999999999999999985


Q ss_pred             CccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc
Q 008557          144 DANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT  223 (561)
Q Consensus       144 ~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~  223 (561)
                      .      .++..|..|.||||+|+..|+.+++++|+++ +..+.+..+.+|.||||+|+..|+..+.++|...+.+++.+
T Consensus        81 ~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  153 (253)
T 1yyh_A           81 A------DANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV  153 (253)
T ss_dssp             C------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB
T ss_pred             C------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc
Confidence            4      4788999999999999999999999999998 34477888999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHH
Q 008557          224 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  303 (561)
Q Consensus       224 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~  303 (561)
                      |..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+
T Consensus       154 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          154 DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQ  231 (253)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHH
Confidence            999999999999999999999999999997 9999999999999999999999999999 89999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCC
Q 008557          304 KLGNTELFSLLKEAGA  319 (561)
Q Consensus       304 ~~~~~~i~~~Ll~~ga  319 (561)
                      ..|+.+++++|.....
T Consensus       232 ~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          232 ERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HTTCHHHHHHHHC---
T ss_pred             HcCCHHHHHHHHHHhh
Confidence            9999999999987543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-36  Score=312.77  Aligned_cols=253  Identities=17%  Similarity=0.178  Sum_probs=216.9

Q ss_pred             cccccccccccccCC-CCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHH
Q 008557           57 EKQQSFHGVTIDKQP-STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSR  135 (561)
Q Consensus        57 e~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~  135 (561)
                      +.+..+....++..+ ..+.++++.+...|+.+..+.+.....+.+.     +.|+++|..|..|.||||+|+..|+.++
T Consensus       107 ~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll-----~~ga~vn~~d~~g~TpL~~A~~~g~~~i  181 (373)
T 2fo1_E          107 AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI-----AAGADVNAMDCDENTPLMLAVLARRRRL  181 (373)
T ss_dssp             CCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH-----HTCCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             hHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-----hcCCCCcCCCCCCCCHHHHHHHcChHHH
Confidence            444445555666666 5677999999999988777665533333332     5789999999999999999999999999


Q ss_pred             HHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC-CCCCCcCCCCCCcHHHHHHHcC---HHHHHH
Q 008557          136 VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN-LETASIPARNGYDSFHVAAKQG---HLVVKA  211 (561)
Q Consensus       136 v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~-~~~~~~~~~~g~tpLh~Aa~~g---~~~v~~  211 (561)
                      |++|++++.      +++..|..|.||||+|+..|+.+++++|++++. ..+.+..|.+|.||||+|+..|   +..+.+
T Consensus       182 v~~Ll~~ga------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~  255 (373)
T 2fo1_E          182 VAYLMKAGA------DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK  255 (373)
T ss_dssp             HHHHHHTTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred             HHHHHHCCC------CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHH
Confidence            999999854      478899999999999999999999999999721 1577888999999999999998   888888


Q ss_pred             HHhcCCCCccc--------cCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc
Q 008557          212 LVSKDPSTGFR--------TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  283 (561)
Q Consensus       212 lL~~~~~~~~~--------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  283 (561)
                      +|...+.+++.        .|..|+||||+|+..|+.++|++|++.+...++.+|..|+||||+|+..|+.+++++|++ 
T Consensus       256 ~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-  334 (373)
T 2fo1_E          256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-  334 (373)
T ss_dssp             HHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             HHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence            88887777664        577999999999999999999999988744459999999999999999999999999999 


Q ss_pred             CCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          284 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       284 ~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      .|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       335 ~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          335 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            89999999999999999999999999999999999864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-35  Score=314.18  Aligned_cols=219  Identities=29%  Similarity=0.385  Sum_probs=173.5

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA  187 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  187 (561)
                      +.+++++..+..|.||||+|+..|+.+++++|++++.      .++..+..|.||||+|+..|+.+++++|+++  +.+.
T Consensus       167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~  238 (437)
T 1n11_A          167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG------SPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--GGSA  238 (437)
T ss_dssp             HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence            3466677777777777777777777777777777643      2566677788888888888888888888877  5566


Q ss_pred             CcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHH
Q 008557          188 SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI  267 (561)
Q Consensus       188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~  267 (561)
                      +..+..|.||||+|+..|+.++.++|...+.+.+..|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+
T Consensus       239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~  317 (437)
T 1n11_A          239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV  317 (437)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHH
Confidence            677778888888888888888888888777777777888888888888888888888888887776 7788888888888


Q ss_pred             HHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       268 Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      |+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus       318 A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~  385 (437)
T 1n11_A          318 ASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK  385 (437)
T ss_dssp             HHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             HHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            888888888888888 78888888888888888888888888888888888888887777777776543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.3e-35  Score=282.44  Aligned_cols=207  Identities=19%  Similarity=0.262  Sum_probs=193.1

Q ss_pred             ccCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 008557          108 ERKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET  186 (561)
Q Consensus       108 ~~~~~~~~~-~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~  186 (561)
                      +.+.+++.. |..|.||||+|+..|+.+++++|++.+.      .++..|..|.||||+|+..|+.+++++|+++ +..+
T Consensus        12 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~   84 (223)
T 2f8y_A           12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA------DANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATD   84 (223)
T ss_dssp             ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB-TTSC
T ss_pred             HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            456777665 8899999999999999999999999854      4788999999999999999999999999998 3447


Q ss_pred             CCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557          187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH  266 (561)
Q Consensus       187 ~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh  266 (561)
                      .+..+..|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  163 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLF  163 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHH
Confidence            7888999999999999999999999999999999999999999999999999999999999999887 999999999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557          267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  323 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~  323 (561)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|+....
T Consensus       164 ~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          164 LAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             HHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            9999999999999999 8999999999999999999999999999999999997653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.6e-35  Score=287.70  Aligned_cols=215  Identities=23%  Similarity=0.267  Sum_probs=192.0

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +.+|.+|+||||+||..|+.++++.|++.....  +..++..|..|.||||+|+..|+.+++++|+++  +.+++..+..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~   78 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRH   78 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCC
Confidence            467999999999999999999999999731100  245888999999999999999999999999998  6778889999


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCCC----CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc-cCCchHHHHH
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDPS----TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIA  268 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~~----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-~~G~TpLh~A  268 (561)
                      |.||||+|+..|+..+.++|...+.    ..+..|..|+||||+|+..|+.+++++|++.++++ +..| ..|.||||+|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA  157 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence            9999999999999988888777665    67778999999999999999999999999999988 7777 8899999999


Q ss_pred             HHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHH
Q 008557          269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  334 (561)
Q Consensus       269 a~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~  334 (561)
                      +..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|...
T Consensus       158 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          158 VENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  222 (241)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             HHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            99999999999999 799999999999999999999999999999999999999888888887643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.2e-35  Score=300.46  Aligned_cols=241  Identities=23%  Similarity=0.233  Sum_probs=211.5

Q ss_pred             cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557           74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS  153 (561)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  153 (561)
                      +.+.+..+...|..+..+       .++.     +.+.+++..|..|.||||+||..|+.++|++|++++.      .++
T Consensus        24 ~~~~L~~A~~~g~~~~v~-------~ll~-----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~   85 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLM-------ALLT-----PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA------DVH   85 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHH-------HHCC-----TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTT
T ss_pred             cchhHHHHHHcCCHHHHH-------HHHH-----hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCC
Confidence            335555555555543333       2222     4678899999999999999999999999999999854      488


Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc----------
Q 008557          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT----------  223 (561)
Q Consensus       154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~----------  223 (561)
                      ..|..|.||||+|+..|+.+++++|+++  +.+++..|..|.||||+|+..|+..+.++|.+.+.+++..          
T Consensus        86 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           86 AKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            8999999999999999999999999998  6788889999999999999999999999998887766543          


Q ss_pred             --------------------------------------------CCCCCcHHHHHHhC---CCHHHHHHHhcCCCCcccc
Q 008557          224 --------------------------------------------DKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKL  256 (561)
Q Consensus       224 --------------------------------------------d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~  256 (561)
                                                                  +..|.||||+|+..   ++.+++++|++.+.++ +.
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~  242 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NE  242 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CC
Confidence                                                        35678999999998   5689999999999987 99


Q ss_pred             cccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          257 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       257 ~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      +|..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus       243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          243 KNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            99999999999999999999999999 89999999999999999999999999999999999999999999999876543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.7e-35  Score=282.14  Aligned_cols=208  Identities=27%  Similarity=0.325  Sum_probs=191.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc-CCCCCCcHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI-PARNGYDSF  198 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~-~~~~g~tpL  198 (561)
                      |+||||+||..|+.++|+.|++.++     ...+..|..|.||||+|+..|+.+++++|++++...+... .+..|.|||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L   76 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   76 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc-----cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence            7899999999999999999999865     3356689999999999999999999999999954455555 889999999


Q ss_pred             HHHHHcCHHHHHHHHhcCC--CCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHH
Q 008557          199 HVAAKQGHLVVKALVSKDP--STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  276 (561)
Q Consensus       199 h~Aa~~g~~~v~~lL~~~~--~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~i  276 (561)
                      |+|+..|+..+.++|...+  .+.+..|..|.||||+|+..|+.+++++|++.|.++ +.+|..|+||||+|+..|+.++
T Consensus        77 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~  155 (228)
T 2dzn_A           77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKL  155 (228)
T ss_dssp             HHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999998887  778888999999999999999999999999999887 9999999999999999999999


Q ss_pred             HHHHhhcCC-CCcccccCCCCCHHHHHHHcCCHHHHHHHH-HcCCcccccCCCCCCHHHH
Q 008557          277 VRCLLSIEG-IDVNSLNKAGESPLDVAEKLGNTELFSLLK-EAGAAHSKDHGKPPSATKQ  334 (561)
Q Consensus       277 v~~LL~~~g-ad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll-~~ga~~~~~~~~~~~~~~~  334 (561)
                      +++|++ .| +++|.+|..|+||||+|+..|+.+++++|+ ++|++++..+..+.+|...
T Consensus       156 v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~  214 (228)
T 2dzn_A          156 IELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV  214 (228)
T ss_dssp             HHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGG
T ss_pred             HHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHH
Confidence            999999 67 999999999999999999999999999999 9999999988888887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-35  Score=287.29  Aligned_cols=209  Identities=22%  Similarity=0.268  Sum_probs=162.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      ..++||||.|+..|+.+.++.|++..+     ..++..|..|.||||+|+..|+.+++++|+++  +.+++..|..|.||
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~   76 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSP   76 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhch-----hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCH
Confidence            456778888888888888888877653     33667777788888888888888888888877  55667777778888


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  277 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv  277 (561)
                      ||+|+..|+..+.++|...+.+++.+|..|+||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v  155 (231)
T 3aji_A           77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMV  155 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHH
Confidence            88888888877777777777777777777888888888888888888888877776 77777788888888888888888


Q ss_pred             HHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       278 ~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      ++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++..+..+.+|....
T Consensus       156 ~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  212 (231)
T 3aji_A          156 HILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA  212 (231)
T ss_dssp             HHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred             HHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            88887 6788888888888888888888888888888888888777777777776554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.2e-36  Score=289.44  Aligned_cols=235  Identities=19%  Similarity=0.178  Sum_probs=204.6

Q ss_pred             ccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccc
Q 008557           68 DKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANE  147 (561)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~  147 (561)
                      +.++..+.++++.+...|..+..+.+....         .+.+.+++..|..|.||||+|+..|+.+++++|++.+.   
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---   70 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLF---------QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA---   70 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHH---------HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHH---------HhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence            346677889999999999887776554321         14578899999999999999999999999999999854   


Q ss_pred             hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC--CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC-
Q 008557          148 AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL--ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-  224 (561)
Q Consensus       148 ~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~--~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-  224 (561)
                         .++..|..|.||||+|+..|+.+++++|++++..  .+.+..+..|.||||+|+..|+..+.++|...+.+++..| 
T Consensus        71 ---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  147 (241)
T 1k1a_A           71 ---SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI  147 (241)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ---CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence               4788899999999999999999999999998431  2677788999999999999999999999999998888888 


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557          225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  304 (561)
Q Consensus       225 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~  304 (561)
                      ..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus       148 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          148 KSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSS
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHh
Confidence            88999999999999999999999999987 9999999999999999999999999999 899999999999999999999


Q ss_pred             cCCHHHHHHHHHcCC
Q 008557          305 LGNTELFSLLKEAGA  319 (561)
Q Consensus       305 ~~~~~i~~~Ll~~ga  319 (561)
                      .|+.++++.|.+.++
T Consensus       226 ~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          226 RRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHTC------
T ss_pred             cCcHHHHhhhccCCC
Confidence            999999999988765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-35  Score=294.04  Aligned_cols=249  Identities=18%  Similarity=0.142  Sum_probs=198.0

Q ss_pred             CcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhh
Q 008557           73 TRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLL  152 (561)
Q Consensus        73 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~  152 (561)
                      .+.+.++.+...|.......+.....+.  +....--....+..|..|+||||+||..|+.++|+.|++.+.      .+
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------~~   85 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRD--FPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW------AV   85 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC------CS
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCcccc--ccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC------CC
Confidence            3447788888888643333221111110  000001123356789999999999999999999999999853      47


Q ss_pred             ccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 008557          153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALH  232 (561)
Q Consensus       153 ~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh  232 (561)
                      +.+|..|.||||+|+..|+.++|++|+++  +.+++..|.+|.||||+|+..|+..+.++|...+.+.+. +..|.||||
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~  162 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIH  162 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTSCHHH
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC-CCCCCCHHH
Confidence            88999999999999999999999999998  678889999999999999999999999999998888765 456999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557          233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  312 (561)
Q Consensus       233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~  312 (561)
                      +|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++. |..|.||||+|+..++.++++
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999987 9999999999999999999999999999 7999995 899999999999999999999


Q ss_pred             HHHHcCCcccccCCCCCCHHHHH
Q 008557          313 LLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       313 ~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      +|+++|++++..+..+.+|....
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHh
Confidence            99999999999988888887544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-34  Score=278.40  Aligned_cols=219  Identities=24%  Similarity=0.261  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHH
Q 008557           87 IEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA  166 (561)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~A  166 (561)
                      .+....-....+.++.     ..+...+.+|..|.||||+|+..|+.+++++|++.+.      .++..|..|.||||+|
T Consensus        12 ~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A           12 NLAYSGKLDELKERIL-----ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV------PVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             HHHHHTCHHHHHHHHH-----HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHH
T ss_pred             HHHHhCCHHHHHHHHH-----hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC------CCCCcCCCCCCHHHHH
Confidence            3333333444444444     3456788899999999999999999999999999854      4788999999999999


Q ss_pred             HHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHH
Q 008557          167 AESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  246 (561)
Q Consensus       167 a~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  246 (561)
                      +..|+.+++++|+++  +.+++..+..|.||||+|+..|+..+.++|.+.+.+++..|..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           81 ASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999999998  678888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       247 l~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      ++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|...++.+++++|.++|++
T Consensus       159 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          159 LFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            9999987 9999999999999999999999999999 7999999999999999999999999999999999875

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.9e-35  Score=282.13  Aligned_cols=228  Identities=22%  Similarity=0.232  Sum_probs=206.5

Q ss_pred             ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557           66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA  145 (561)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~  145 (561)
                      +.+.++..+.++++.+...|..+..+.+.             +.+.+++..+..|.||||+|+..|+.+++++|++.+. 
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-   68 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLV-------------QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-   68 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHH-------------HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-
Confidence            34566777889999999999877665443             4578899999999999999999999999999998854 


Q ss_pred             cchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC
Q 008557          146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK  225 (561)
Q Consensus       146 ~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~  225 (561)
                           .++..|..|.||||+|+..|+.+++++|++. +..+.+..+..|.||||+|+..|+..+.++|.+.+.+++.+|.
T Consensus        69 -----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  142 (237)
T 3b7b_A           69 -----LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN  142 (237)
T ss_dssp             -----CCCCCCTTSCCHHHHHHHTTCHHHHHHHHTT-TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC
Confidence                 4788899999999999999999999999998 3467788899999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+..
T Consensus       143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          143 EENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHH
Confidence            9999999999999999999999999987 8999999999999999999999999999 8999999999999999999999


Q ss_pred             CCHHHHHHHH
Q 008557          306 GNTELFSLLK  315 (561)
Q Consensus       306 ~~~~i~~~Ll  315 (561)
                      ++.+.+..|+
T Consensus       221 ~~~~~~~~l~  230 (237)
T 3b7b_A          221 SQVWSALQMS  230 (237)
T ss_dssp             CHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9886554443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-35  Score=307.84  Aligned_cols=236  Identities=17%  Similarity=0.183  Sum_probs=206.1

Q ss_pred             cccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 008557           65 VTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCD  144 (561)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~  144 (561)
                      ......+..+.++++.+...|+.+..+.+.             +.+++++..|..|.||||+||..|+.++|++|++.+.
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   77 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLI-------------ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE   77 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHH-------------HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            344556667779999999999877666543             4578999999999999999999999999999999865


Q ss_pred             ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC--CCCCCc-----------------CCCCCCcHHHHHHHcC
Q 008557          145 ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN--LETASI-----------------PARNGYDSFHVAAKQG  205 (561)
Q Consensus       145 ~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~--~~~~~~-----------------~~~~g~tpLh~Aa~~g  205 (561)
                              +..+.+|.||||+|+..|+.++|++|++++.  +.+++.                 .+.+|.||||+|+..|
T Consensus        78 --------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  149 (364)
T 3ljn_A           78 --------VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLG  149 (364)
T ss_dssp             --------CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSC
T ss_pred             --------CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcC
Confidence                    2334589999999999999999999999721  122222                 7788999999999999


Q ss_pred             --HHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCc----ccccccCCchHHHHHHHhCCHHHHHH
Q 008557          206 --HLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV----LKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       206 --~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                        +.++.++|...+++++..|..|+||||+|+..|+.+++++|++.+++.    ++.+|..|+||||+|+..|+.+++++
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  229 (364)
T 3ljn_A          150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR  229 (364)
T ss_dssp             GGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH
T ss_pred             CchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHH
Confidence              999999999989999999999999999999999999999999998872    38999999999999999999999999


Q ss_pred             HhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          280 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       280 LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      |++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       230 Ll~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          230 FVE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             HHT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             HHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence            999 899999999999999999999999999999999998863

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-35  Score=294.01  Aligned_cols=230  Identities=19%  Similarity=0.204  Sum_probs=202.9

Q ss_pred             ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557           66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA  145 (561)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~  145 (561)
                      ....++..+.++++.+...|..+..+.+.             +.+.+++.+|..|.||||+|+..|+.++|++|++.+  
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--  115 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLI-------------SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG--  115 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHH-------------HTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHH-------------HCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--
Confidence            34567777889999999999876665443             457889999999999999999999999999999984  


Q ss_pred             cchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC
Q 008557          146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK  225 (561)
Q Consensus       146 ~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~  225 (561)
                          ..++..|..|.||||+|+..|+.+++++|+++  +.+.+. +.+|.||||+|+..|+..+.++|...+.+++..|.
T Consensus       116 ----a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~  188 (285)
T 3d9h_A          116 ----AQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS  188 (285)
T ss_dssp             ----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT
T ss_pred             ----CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                34788999999999999999999999999998  444443 44599999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      .|+||||+|+..|+.+++++|++.++++ + .|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+  
T Consensus       189 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~--  263 (285)
T 3d9h_A          189 HLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVP--  263 (285)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC--
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc--
Confidence            9999999999999999999999999987 6 48999999999999999999999999 89999999999999999999  


Q ss_pred             CCHHHHHHHHHc-CCccc
Q 008557          306 GNTELFSLLKEA-GAAHS  322 (561)
Q Consensus       306 ~~~~i~~~Ll~~-ga~~~  322 (561)
                      ++.+++++|+++ |++..
T Consensus       264 ~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          264 PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TTSHHHHHHHHHC-----
T ss_pred             CccHHHHHHHHhhccCCC
Confidence            567999999998 77654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-34  Score=305.26  Aligned_cols=247  Identities=24%  Similarity=0.311  Sum_probs=183.9

Q ss_pred             cccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 008557           65 VTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCD  144 (561)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~  144 (561)
                      +.++..+..+.++++.+...|+.+..+.+.             +.+++++..+..|.||||+||..|+.++|++|++++.
T Consensus         5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~   71 (437)
T 1n11_A            5 ISGGGGGESGLTPLHVASFMGHLPIVKNLL-------------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA   71 (437)
T ss_dssp             ----------CCHHHHHHHHTCHHHHHHHH-------------HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHH-------------HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            344555666678888888888766665443             3467777778888888888888888888888887743


Q ss_pred             ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC
Q 008557          145 ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD  224 (561)
Q Consensus       145 ~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d  224 (561)
                            .++.+|..|.||||+|+..|+.++|++|+++  +.+++..+..|.||||+|+..|+..+.+.|...+......+
T Consensus        72 ------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  143 (437)
T 1n11_A           72 ------KVNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT  143 (437)
T ss_dssp             ------CSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             ------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCC
Confidence                  3677778888888888888888888888887  56677777788888888888888877777777777777777


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHH
Q 008557          225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  304 (561)
Q Consensus       225 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~  304 (561)
                      ..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+.
T Consensus       144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          144 KKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHH
Confidence            77888888888888888888888887776 7777788888888888888888888887 677788888888888888888


Q ss_pred             cCCHHHHHHHHHcCCcccccCCCCCCHHHH
Q 008557          305 LGNTELFSLLKEAGAAHSKDHGKPPSATKQ  334 (561)
Q Consensus       305 ~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~  334 (561)
                      .++.+++++|+++|++++..+..+.+|...
T Consensus       222 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  251 (437)
T 1n11_A          222 QNQVEVARSLLQYGGSANAESVQGVTPLHL  251 (437)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            888888888888888777766666666544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-34  Score=284.03  Aligned_cols=238  Identities=21%  Similarity=0.184  Sum_probs=211.9

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhcc
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK  154 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~  154 (561)
                      +++..+...|..+..+.+.             +.+.+++.. +..|.||||+|+..|+.+++++|++.+.      .++.
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~   67 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------DPVL   67 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTC
T ss_pred             hHHHHHHHcCCHHHHHHHH-------------HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCcc
Confidence            5556666666655444332             456778877 7889999999999999999999999854      4788


Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcccc----------C
Q 008557          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRT----------D  224 (561)
Q Consensus       155 ~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~----------d  224 (561)
                      .|..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..|+..+.++|...+..++..          +
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  145 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR  145 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhc
Confidence            899999999999999999999999998  6788889999999999999999999999999988887766          7


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhcC-CCCcccccccCCchHHHHHHHhCC----HHHHHHHhhcCCCCcccccCCCCCHH
Q 008557          225 KKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGR----TQIVRCLLSIEGIDVNSLNKAGESPL  299 (561)
Q Consensus       225 ~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~n~~d~~G~TpLh~Aa~~g~----~~iv~~LL~~~gad~n~~d~~G~TpL  299 (561)
                      ..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+|+..++    .+++++|++ .|+++|.+|..|.|||
T Consensus       146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          146 KGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPL  223 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHH
Confidence            8899999999999999999999998 6665 9999999999999999999    999999999 8999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHH-cCCcccccCCCCCCHHHHHH
Q 008557          300 DVAEKLGNTELFSLLKE-AGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       300 ~~A~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~l~  336 (561)
                      |+|+..|+.+++++|++ .|++++..+..+.+|.....
T Consensus       224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~  261 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  261 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH
Confidence            99999999999999999 89999998888988876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.5e-36  Score=291.60  Aligned_cols=203  Identities=26%  Similarity=0.308  Sum_probs=181.1

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +..|.+|+||||+|+..|+.++++.|++.+...  +.+++..|..|.||||+|+..|+.++|++|+++  +.+++..|..
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~   77 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFR   77 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTT
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCC
Confidence            357899999999999999999999999886532  235889999999999999999999999999998  6788889999


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCCCC------ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCccccccc-CCchHHH
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDPST------GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALH  266 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~~~------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh  266 (561)
                      |.||||+|+..|+..+.++|...+..      .+..|..|.||||+|+..|+.+++++|++.|+++ +.+|. .|+||||
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~  156 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALH  156 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHH
Confidence            99999999999999888888887654      4667889999999999999999999999999998 88887 9999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 008557          267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  322 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~  322 (561)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++..
T Consensus       157 ~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999 799999999999999999999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.9e-34  Score=290.90  Aligned_cols=265  Identities=15%  Similarity=0.098  Sum_probs=208.6

Q ss_pred             CCCCCccccccc--ccccccCCCC-cccccccchhhhhHHHHHHHHHHHHH--------------------HhhhcCCCc
Q 008557           52 ALGPMEKQQSFH--GVTIDKQPST-RGVMEKQKSFRGFIEKQKSFRVVMER--------------------QLSFIGGGE  108 (561)
Q Consensus        52 ~~g~~e~~~~~~--~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------~l~~~~~~~  108 (561)
                      ..|+.+.++.+.  +++++.++.. +.|+++.+...|+.+..+.+......                    .........
T Consensus        34 ~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (337)
T 4g8k_A           34 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS  113 (337)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence            356777777665  4566655544 55888888888887776655421000                    000000114


Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccc----hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 008557          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANE----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL  184 (561)
Q Consensus       109 ~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~  184 (561)
                      .+.+++..|..|.||||+|+..|+.++++.|++++....    ........+..|.||||+|+..|+.++|++||++ .+
T Consensus       114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~-~g  192 (337)
T 4g8k_A          114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE-MG  192 (337)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH-SC
T ss_pred             ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc-cC
Confidence            567888999999999999999999999999999876421    1233455677899999999999999999999976 36


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCH----HHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccC
Q 008557          185 ETASIPARNGYDSFHVAAKQGH----LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK  260 (561)
Q Consensus       185 ~~~~~~~~~g~tpLh~Aa~~g~----~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~  260 (561)
                      .+++..|..|.||||.++..++    ..+.++|.+.+++++.+|..|+||||+|+..|+.++++.|++.+...++.+|.+
T Consensus       193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~  272 (337)
T 4g8k_A          193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  272 (337)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred             CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence            7888999999999998876543    467888889999999999999999999999999999999998754445999999


Q ss_pred             CchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557          261 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  323 (561)
Q Consensus       261 G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~  323 (561)
                      |+||||+|+..|+.++|++||+ .|+|+|.+     ||||+|+..|+.+++++|+++||+++.
T Consensus       273 G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          273 GKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            9999999999999999999999 89988754     599999999999999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.1e-34  Score=275.22  Aligned_cols=233  Identities=26%  Similarity=0.264  Sum_probs=202.7

Q ss_pred             cCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccch
Q 008557           69 KQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEA  148 (561)
Q Consensus        69 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~  148 (561)
                      ..+..+.+++..+...|..+..+.+.             +.+.+++.++..|.||||+|+..|+.+++++|++.+...  
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--   68 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELV-------------EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--   68 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred             ccccccchHHHHHHHcCChHHHHHHH-------------HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--
Confidence            34556678888888888876666543             457889999999999999999999999999999986532  


Q ss_pred             hHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCC
Q 008557          149 KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQ  228 (561)
Q Consensus       149 ~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~  228 (561)
                         ....+..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..|+..+.++|.+.+.+++..|..|.
T Consensus        69 ---~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~  143 (240)
T 3eu9_A           69 ---DQLGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM  143 (240)
T ss_dssp             ---TCCBTTTTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ---hhhcCCcCCChhHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCC
Confidence               334456699999999999999999999998  677888899999999999999999999999999999999999999


Q ss_pred             cHHHHHHhCCC-HHHHHHHhcCCCCccccccc-CCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          229 TALHMAVKGQN-EDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       229 tpLh~A~~~g~-~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                      ||||+|+..++ .+++++|++.+.++ +..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..+
T Consensus       144 t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          144 TPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             CHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             cHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999996555 89999999999987 77776 99999999999999999999999 79999999999999999999999


Q ss_pred             CHHHHHHHHHcCCcccc
Q 008557          307 NTELFSLLKEAGAAHSK  323 (561)
Q Consensus       307 ~~~i~~~Ll~~ga~~~~  323 (561)
                      +.+++++|+++|++...
T Consensus       222 ~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          222 NVWMINHLQEARQAKGY  238 (240)
T ss_dssp             CHHHHHHHHHHC-----
T ss_pred             cHHHHHHHHHhhhccCc
Confidence            99999999999987643

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=7.3e-34  Score=268.47  Aligned_cols=194  Identities=22%  Similarity=0.263  Sum_probs=180.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCc
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD  196 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~t  196 (561)
                      +..+.||||.|+..|+.+.++.|+..++.     +++..|..|.||||+|+..|+.++|++|+++  +.+++..+..|.|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t   74 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTY-----QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDS   74 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            35688999999999999999999988652     4889999999999999999999999999998  7788889999999


Q ss_pred             HHHHHHHcCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC--
Q 008557          197 SFHVAAKQGHLVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR--  273 (561)
Q Consensus       197 pLh~Aa~~g~~~v~~lL~-~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~--  273 (561)
                      |||+|+..|+..+.++|. ..+.+.+..|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++  
T Consensus        75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~  154 (201)
T 3hra_A           75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN  154 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred             HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch
Confidence            999999999998877777 78888889999999999999999999999999999954459999999999999999998  


Q ss_pred             ---HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          274 ---TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       274 ---~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                         .+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       155 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          155 QLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence               999999999 89999999999999999999999999999999987

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.6e-34  Score=292.05  Aligned_cols=235  Identities=20%  Similarity=0.192  Sum_probs=199.1

Q ss_pred             ccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCccc------
Q 008557           75 GVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANE------  147 (561)
Q Consensus        75 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~------  147 (561)
                      .+++..|...|..+..+.+.             +.|+++|.++. .|+||||+||..|+.++|++||++++...      
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL-------------~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~   92 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG   92 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-------------HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             ChHHHHHHHcCCHHHHHHHH-------------HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC
Confidence            36677777777766665443             56899998876 49999999999999999999999876321      


Q ss_pred             ---------------------hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC--------CCcCCCCCCcHH
Q 008557          148 ---------------------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET--------ASIPARNGYDSF  198 (561)
Q Consensus       148 ---------------------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~--------~~~~~~~g~tpL  198 (561)
                                           .+..++..|..|.||||+|+..|+.+++++|++++...+        ....+..|.|||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L  172 (337)
T 4g8k_A           93 ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  172 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred             CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence                                 123567889999999999999999999999999843221        123456799999


Q ss_pred             HHHHHcCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHhCCC----HHHHHHHhcCCCCcccccccCCchHHHHHHHhCC
Q 008557          199 HVAAKQGHLVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  273 (561)
Q Consensus       199 h~Aa~~g~~~v~~lL~-~~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~  273 (561)
                      |+|+..|+.+++++|. +.+++++..|..|+||||.++..++    .+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus       173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhh
Confidence            9999999998877776 5789999999999999998875433    46889999999997 9999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557          274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  323 (561)
Q Consensus       274 ~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~  323 (561)
                      .++++.|+...|+++|.+|.+|+||||+|+..|+.+++++|+++||+++.
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            99999999877999999999999999999999999999999999999864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=295.30  Aligned_cols=236  Identities=24%  Similarity=0.278  Sum_probs=167.4

Q ss_pred             CCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHH-HHHHHHhcCCccchh
Q 008557           71 PSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLS-RVMEILQSCDANEAK  149 (561)
Q Consensus        71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~  149 (561)
                      |..+.+++..|...|+.+..+.+........     ......++..+..|.||||.|+..++.+ +++.|++.+      
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~-----~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G------   76 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDL-----EDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG------   76 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CC------
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCccc-----ccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC------
Confidence            3334467788888888776665432111100     1122346677889999999999988764 788888874      


Q ss_pred             HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc
Q 008557          150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT  229 (561)
Q Consensus       150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t  229 (561)
                      +++|.+|.+|+||||+||..|+.++|++|++.  ++++...+.+|.||+|+|+..++..+.++|...+.+++.+|..|+|
T Consensus        77 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~T  154 (269)
T 4b93_B           77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT  154 (269)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCC
Confidence            44899999999999999999999999999998  6788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC-H
Q 008557          230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-T  308 (561)
Q Consensus       230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~-~  308 (561)
                      |||+|+..|+.++|++|++.|+++ |.+|..|+||||+|+..|+.++|++|++ .|+|+|.+|.+|+||||+|+++++ .
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~  232 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIM  232 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHH
Confidence            999999999999999999999997 9999999999999999999999999999 899999999999999999987765 2


Q ss_pred             HHHHHHHHcCCcc
Q 008557          309 ELFSLLKEAGAAH  321 (561)
Q Consensus       309 ~i~~~Ll~~ga~~  321 (561)
                      ++++.|...++..
T Consensus       233 ~lL~~l~~~~~~~  245 (269)
T 4b93_B          233 ELLQVVPSCVASL  245 (269)
T ss_dssp             HHTTC--------
T ss_pred             HHHHHHHHhchhh
Confidence            4444444444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=287.17  Aligned_cols=216  Identities=22%  Similarity=0.237  Sum_probs=169.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHhcCCccc--hhHhhccCCCCCCcHHHHHHHhCcHH-HHHHHHhcCCCCCCCcCC
Q 008557          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANE--AKDLLSKKNQEGETPLYVAAESGHAL-IVEEMLQHMNLETASIPA  191 (561)
Q Consensus       115 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~g~TpLh~Aa~~g~~~-iv~~LL~~~~~~~~~~~~  191 (561)
                      .+|..+.+|||.||+.|+.++|++||+.+..+.  ....++..|..|.||||.|+..++.+ ++++|++.  +.+++..|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d   83 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTS   83 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcC
Confidence            356778899999999999999999999865421  12346778899999999999988764 78999987  77889999


Q ss_pred             CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHh
Q 008557          192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  271 (561)
Q Consensus       192 ~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~  271 (561)
                      .+|+||||+|+..|+..+.++|...+++++..+..|.||+|+|+..++.+++++|++.++++ +.+|..|+||||+|+..
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999997 99999999999999999


Q ss_pred             CCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHH
Q 008557          272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  334 (561)
Q Consensus       272 g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~  334 (561)
                      |+.+++++|++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.||...
T Consensus       163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  224 (269)
T 4b93_B          163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDC  224 (269)
T ss_dssp             TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGG
T ss_pred             CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            99999999999 899999999999999999999999999999999999999998888888654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.2e-34  Score=298.31  Aligned_cols=216  Identities=19%  Similarity=0.153  Sum_probs=192.2

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q 008557          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS  188 (561)
Q Consensus       109 ~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~  188 (561)
                      .+.+++..|..|.||||+||..|+.++|++|++.+.      +++..|..|.||||+||..|+.++|++|++++  .  .
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~--~   78 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV------SPTIQNRFGCTALHLACKFGCVDTAKYLASVG--E--V   78 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC--C--C
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCcHHHHHHHcCCHHHHHHHHHCC--C--C
Confidence            356677889999999999999999999999999853      47899999999999999999999999999993  3  3


Q ss_pred             cCCCCCCcHHHHHHHcCHHHHHHHHhcC----CCCccc-----------------cCCCCCcHHHHHHhCC--CHHHHHH
Q 008557          189 IPARNGYDSFHVAAKQGHLVVKALVSKD----PSTGFR-----------------TDKKGQTALHMAVKGQ--NEDIVLE  245 (561)
Q Consensus       189 ~~~~~g~tpLh~Aa~~g~~~v~~lL~~~----~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~  245 (561)
                      ..+.+|.||||+|+..|+..+.++|...    +..++.                 .|..|.||||+|+..|  +.+++++
T Consensus        79 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~  158 (364)
T 3ljn_A           79 HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI  158 (364)
T ss_dssp             CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            4456899999999999999998888887    666655                 7889999999999999  9999999


Q ss_pred             HhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC-----cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          246 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-----VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       246 Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad-----~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      |++.|+++ +..|..|+||||+|+..|+.+++++|++ .|++     +|..|..|.||||+|+..|+.+++++|+++|++
T Consensus       159 Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  236 (364)
T 3ljn_A          159 LVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID  236 (364)
T ss_dssp             HHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred             HHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999987 9999999999999999999999999999 7888     999999999999999999999999999999999


Q ss_pred             ccccCCCCCCHHHHHH
Q 008557          321 HSKDHGKPPSATKQLK  336 (561)
Q Consensus       321 ~~~~~~~~~~~~~~l~  336 (561)
                      ++..+..+.+|.....
T Consensus       237 ~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          237 VNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             TTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHH
Confidence            9999888988876543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.1e-34  Score=288.71  Aligned_cols=201  Identities=22%  Similarity=0.166  Sum_probs=185.6

Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC
Q 008557          112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA  191 (561)
Q Consensus       112 ~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~  191 (561)
                      +++.+|..|.||||+|+..|+.++|+.|++.+      ..++..  +|.||||+|+..|+.++|++|+++  +.+++..|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d   92 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG------ALKNLL--ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFD   92 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence            57899999999999999999999999999984      335655  499999999999999999999998  67888899


Q ss_pred             CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCC-CcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG-QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       192 ~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                      ..|.||||+|+..|+..+.++|...+++++..|..| .||||+|+..|+.+++++|++.+++..+.  ..|+||||+|+.
T Consensus        93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~  170 (285)
T 3kea_A           93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIK  170 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHHH
Confidence            999999999999999999999999999999999999 79999999999999999999999876222  289999999999


Q ss_pred             hCCHHHHHHHhhcCCCCcccccCCCCCH-HHHHHHcCCHHHHHHHHHcCCcccccC
Q 008557          271 KGRTQIVRCLLSIEGIDVNSLNKAGESP-LDVAEKLGNTELFSLLKEAGAAHSKDH  325 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad~n~~d~~G~Tp-L~~A~~~~~~~i~~~Ll~~ga~~~~~~  325 (561)
                      .|+.+++++|++ .|+++|.+|..|+|| ||+|+..++.+++++|+++|++++..+
T Consensus       171 ~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          171 NGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             TTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             cChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            999999999999 799999999999998 999999999999999999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.7e-34  Score=274.07  Aligned_cols=224  Identities=17%  Similarity=0.166  Sum_probs=191.8

Q ss_pred             cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557           74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS  153 (561)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  153 (561)
                      +.++++.+...|..+..+.+...            .....+..|..|.||||+|+..|+.++++.|++.++.    ..++
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~   65 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHS------------KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN----VNLD   65 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHH------------CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT----CCGG
T ss_pred             CccHHHHHHHhCCHHHHHHHHhc------------CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc----cccc
Confidence            34677788888876665544321            1122345789999999999999999999999999742    2244


Q ss_pred             c-CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 008557          154 K-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALH  232 (561)
Q Consensus       154 ~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh  232 (561)
                      . .|..|.||||+|+..|+.+++++|++++...+.+..+..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||
T Consensus        66 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  145 (228)
T 2dzn_A           66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH  145 (228)
T ss_dssp             GCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHH
Confidence            5 889999999999999999999999998544788889999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557          233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  312 (561)
Q Consensus       233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~  312 (561)
                      +|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+|.||||+|...   ++.+
T Consensus       146 ~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~  222 (228)
T 2dzn_A          146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKK  222 (228)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHH
T ss_pred             HHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHH
Confidence            9999999999999999994445999999999999999999999999999338999999999999999999754   5666


Q ss_pred             HHHH
Q 008557          313 LLKE  316 (561)
Q Consensus       313 ~Ll~  316 (561)
                      +|++
T Consensus       223 ~l~~  226 (228)
T 2dzn_A          223 FFLN  226 (228)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.7e-34  Score=284.68  Aligned_cols=218  Identities=17%  Similarity=0.122  Sum_probs=180.7

Q ss_pred             ccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 008557           68 DKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKN---KDSPGKRGDLQLHLAARAGNLSRVMEILQSCD  144 (561)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~  144 (561)
                      +.++..+.++++.+...|+.+..+.+..             .+.+   ++.+|..|.||||+||..|+.++|+.|++++.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-------------~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga   69 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLG-------------FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHH-------------HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHh-------------cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3456778899999999998877665542             2333   77889999999999999999999999999854


Q ss_pred             ccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC----------------------------------------
Q 008557          145 ANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL----------------------------------------  184 (561)
Q Consensus       145 ~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~----------------------------------------  184 (561)
                            .++.+|..|.||||+|+..|+.+++++|++++..                                        
T Consensus        70 ------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (282)
T 1oy3_D           70 ------GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR  143 (282)
T ss_dssp             ------CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred             ------CCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhh
Confidence                  4788999999999999999999999999997422                                        


Q ss_pred             -----CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCC-CCcHHHHHHhCCCHHHHHHHhcCCCCcccccc
Q 008557          185 -----ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK-GQTALHMAVKGQNEDIVLELIRPDPSVLKLED  258 (561)
Q Consensus       185 -----~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d  258 (561)
                           .+++..+..|.||||+|+..|+..+.++|.+.+.+++..+.. |+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus       144 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d  222 (282)
T 1oy3_D          144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARM  222 (282)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             hhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccc
Confidence                 125667889999999999999999999999988888888754 999999999999999999999999987 9999


Q ss_pred             cCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          259 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       259 ~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                      ..|+||||+|+..|+.+++++|++ +|++++.+|..|.|||++|....
T Consensus       223 ~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          223 YGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             TTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             cCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            999999999999999999999999 89999999999999999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-34  Score=285.64  Aligned_cols=211  Identities=21%  Similarity=0.240  Sum_probs=191.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (561)
Q Consensus       116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~  195 (561)
                      .+..|.||||.||..|+.++|+.|++.+.      .++..|..|.||||+||..|+.++|++|+++  +.+++..|..|.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~  107 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGA------DINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGW  107 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCC------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCC
Confidence            34578899999999999999999999854      3788999999999999999999999999998  678889999999


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCC-----------------------
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS-----------------------  252 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-----------------------  252 (561)
                      ||||+|+..|+..+.++|...+.+++..|..|.||||+|+..++.++++.++.....                       
T Consensus       108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (299)
T 1s70_B          108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999887754322                       


Q ss_pred             ---cccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCC
Q 008557          253 ---VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP  329 (561)
Q Consensus       253 ---~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~  329 (561)
                         .....+..|.||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus       188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  266 (299)
T 1s70_B          188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ  266 (299)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence               123356789999999999999999999999 8999999999999999999999999999999999999999888888


Q ss_pred             CHHHHH
Q 008557          330 SATKQL  335 (561)
Q Consensus       330 ~~~~~l  335 (561)
                      +|....
T Consensus       267 t~l~~A  272 (299)
T 1s70_B          267 TAFDVA  272 (299)
T ss_dssp             CTTTSC
T ss_pred             CHHHHH
Confidence            876544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.8e-33  Score=285.93  Aligned_cols=242  Identities=20%  Similarity=0.198  Sum_probs=208.6

Q ss_pred             CCCCccccccc---ccccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHH
Q 008557           53 LGPMEKQQSFH---GVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAAR  129 (561)
Q Consensus        53 ~g~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~  129 (561)
                      .|+.+.+..+.   +...+.++..+.++++.+...|+.+..+.+.             +.+++++.+|..|.||||+|+.
T Consensus        34 ~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~  100 (351)
T 3utm_A           34 SGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL-------------QHGADVHAKDKGGLVPLHNACS  100 (351)
T ss_dssp             HTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH-------------HcCCCCCccCCCCCcHHHHHHH
Confidence            45555554443   3456667778889999999999877666543             4678999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc--------------------
Q 008557          130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI--------------------  189 (561)
Q Consensus       130 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~--------------------  189 (561)
                      .|+.+++++|++++.      .++..|..|.||||+|+..|+.+++++|+++  +.+++.                    
T Consensus       101 ~g~~~iv~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A          101 YGHYEVTELLLKHGA------CVNAMDLWQFTPLHEAASKNRVEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             TTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             CCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHH
Confidence            999999999999854      4788999999999999999999999999998  344333                    


Q ss_pred             ----------------------------------CCCCCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCCCCCcHHH
Q 008557          190 ----------------------------------PARNGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDKKGQTALH  232 (561)
Q Consensus       190 ----------------------------------~~~~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~~g~tpLh  232 (561)
                                                        .+..|.||||+|+..   +...+.++|.+.+.+++.+|..|+||||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  252 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH  252 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence                                              346678999999999   6678999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557          233 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  312 (561)
Q Consensus       233 ~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~  312 (561)
                      +|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+|+|    +.++++
T Consensus       253 ~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a----~~~~~~  326 (351)
T 3utm_A          253 VAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG----NEAVQQ  326 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHS----CHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhh----hHHHHH
Confidence            999999999999999999997 9999999999999999999999999999 8999999999999999998    678999


Q ss_pred             HHHHcCCcc
Q 008557          313 LLKEAGAAH  321 (561)
Q Consensus       313 ~Ll~~ga~~  321 (561)
                      +|.+.+...
T Consensus       327 ~l~~~~~~~  335 (351)
T 3utm_A          327 ILSESTPMR  335 (351)
T ss_dssp             HHHHC----
T ss_pred             HHHhccccc
Confidence            998877653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-34  Score=296.77  Aligned_cols=223  Identities=18%  Similarity=0.245  Sum_probs=198.2

Q ss_pred             CCCCCCC-CCCChHHHHHHHcCCHHHHHHHHhcCCcc--chhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC
Q 008557          111 KNKDSPG-KRGDLQLHLAARAGNLSRVMEILQSCDAN--EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA  187 (561)
Q Consensus       111 ~~~~~~~-~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  187 (561)
                      .++|..| ..|+||||+||..|+.++++.|+......  ..+.+++..|..|.||||+|+..|+.++|++|+++  ++++
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~  192 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--GADP  192 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCS
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHC--CCCC
Confidence            5778888 78999999999999999988887310000  00345889999999999999999999999999998  7788


Q ss_pred             CcCCCCCCcHHHHHHHcCHHHHHHHHhcCC---CCccccCCCCCcHHHHHHhCC---CHHHHHHHhcCCCCcccc-----
Q 008557          188 SIPARNGYDSFHVAAKQGHLVVKALVSKDP---STGFRTDKKGQTALHMAVKGQ---NEDIVLELIRPDPSVLKL-----  256 (561)
Q Consensus       188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~---~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~n~-----  256 (561)
                      +..+.+|.||||+|+..|+..+.++|...+   .+.+..|..|.||||+|+..+   +.+++++|++.++++ +.     
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~  271 (373)
T 2fo1_E          193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAAR  271 (373)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGG
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccc
Confidence            899999999999999999999999998877   677888999999999999998   899999999999887 43     


Q ss_pred             ---cccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHH
Q 008557          257 ---EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  333 (561)
Q Consensus       257 ---~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  333 (561)
                         .|..|+||||+|+..|+.+++++|++..|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|..
T Consensus       272 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~  351 (373)
T 2fo1_E          272 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  351 (373)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             cCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHH
Confidence               67799999999999999999999998666999999999999999999999999999999999999998888988876


Q ss_pred             HHH
Q 008557          334 QLK  336 (561)
Q Consensus       334 ~l~  336 (561)
                      ...
T Consensus       352 ~A~  354 (373)
T 2fo1_E          352 LAQ  354 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-34  Score=287.77  Aligned_cols=211  Identities=18%  Similarity=0.235  Sum_probs=174.6

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc----cCCCCCCcHHHHHHHh---CcHHHHHHHHhcC
Q 008557          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS----KKNQEGETPLYVAAES---GHALIVEEMLQHM  182 (561)
Q Consensus       110 ~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~  182 (561)
                      ++..+..|..|+||||+||+.|+.++|+.|++.+...  +..++    ..|..|.||||+|+..   |+.++|++|++++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRS--KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHS--CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhc--ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            3455678999999999999999999999999853211  11122    4588999999999987   9999999999983


Q ss_pred             CC---------CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC--------------CCCcHHHHHHhCCC
Q 008557          183 NL---------ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK--------------KGQTALHMAVKGQN  239 (561)
Q Consensus       183 ~~---------~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~--------------~g~tpLh~A~~~g~  239 (561)
                      ..         ......|..|.||||+|+..|+..+.++|.+.+++++..|.              .|+||||+|+..|+
T Consensus        81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCC
Confidence            21         11223567899999999999999999999999999988887              79999999999999


Q ss_pred             HHHHHHHhc---CCCCcccccccCCchHHHHHHHhCC---------HHHHHHHhhcCCCCcc-------cccCCCCCHHH
Q 008557          240 EDIVLELIR---PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDVN-------SLNKAGESPLD  300 (561)
Q Consensus       240 ~~iv~~Ll~---~~~~~~n~~d~~G~TpLh~Aa~~g~---------~~iv~~LL~~~gad~n-------~~d~~G~TpL~  300 (561)
                      .+++++|++   .+.++ +.+|.+|+||||+|+..|+         .+++++|++ .|+++|       .+|..|+||||
T Consensus       161 ~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             HHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHH
Confidence            999999999   88887 9999999999999999998         899999999 799987       58999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCC-ccccc
Q 008557          301 VAEKLGNTELFSLLKEAGA-AHSKD  324 (561)
Q Consensus       301 ~A~~~~~~~i~~~Ll~~ga-~~~~~  324 (561)
                      +|+..|+.+++++|+++|| ++...
T Consensus       239 ~A~~~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          239 LAASSGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHTC-----
T ss_pred             HHHHhChHHHHHHHHHCCCCCchhh
Confidence            9999999999999999999 55443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3e-33  Score=281.04  Aligned_cols=223  Identities=23%  Similarity=0.251  Sum_probs=190.6

Q ss_pred             CCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHh
Q 008557           72 STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL  151 (561)
Q Consensus        72 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  151 (561)
                      ..+++++..+...|..+..+.+.             +.++++|..|..|.||||+||..|+.++|++|++.+      ++
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~   98 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLL-------------ERGADINYANVDGLTALHQACIDDNVDMVKFLVENG------AN   98 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHH-------------HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT------CC
T ss_pred             cCCccHHHHHHHcCCHHHHHHHH-------------HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC------CC
Confidence            34568888888888877666543             457889999999999999999999999999999985      44


Q ss_pred             hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHH------------------
Q 008557          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALV------------------  213 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL------------------  213 (561)
                      ++..|..|.||||+|+..|+.++|++|+++  +.+++..+.+|.||||+|+..|+..+...+                  
T Consensus        99 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  176 (299)
T 1s70_B           99 INQPDNEGWIPLHAAASCGYLDIAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI  176 (299)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH
Confidence            888999999999999999999999999998  678888999999999999999887554432                  


Q ss_pred             ---------hcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcC
Q 008557          214 ---------SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  284 (561)
Q Consensus       214 ---------~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~  284 (561)
                               ..........+..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .
T Consensus       177 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~  254 (299)
T 1s70_B          177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-N  254 (299)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             HHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHH-c
Confidence                     2233333446788999999999999999999999999987 9999999999999999999999999999 8


Q ss_pred             CCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          285 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       285 gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      |++++.+|..|+||||+|.+.....+.+++.+.
T Consensus       255 gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ  287 (299)
T ss_dssp             TCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred             CCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999765544444444443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=8.2e-34  Score=279.10  Aligned_cols=195  Identities=21%  Similarity=0.245  Sum_probs=173.5

Q ss_pred             CCChHHHHHHHcCCHHHH----HHHHhcCCccchhHhhcc----CCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCC
Q 008557          119 RGDLQLHLAARAGNLSRV----MEILQSCDANEAKDLLSK----KNQEGETPLYVAAES---GHALIVEEMLQHMNLETA  187 (561)
Q Consensus       119 ~G~T~Lh~Aa~~g~~~~v----~~Ll~~~~~~~~~~~~~~----~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~~~~~~  187 (561)
                      .|+||||.||..|+.+.|    ++|++.+.      .++.    .|..|.||||+|+..   |+.++|++|++++  .+.
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~------~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~   72 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK------YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDS   72 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC------CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC------CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccc
Confidence            488999999999999854    55555643      3666    899999999999999   9999999999983  222


Q ss_pred             C-----------cCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCC-------------CCcHHHHHHhCCCHHHH
Q 008557          188 S-----------IPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK-------------GQTALHMAVKGQNEDIV  243 (561)
Q Consensus       188 ~-----------~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv  243 (561)
                      .           ..|..|.||||+|+..|+..+.++|.+.+++++..|..             |+||||+|+..|+.+++
T Consensus        73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v  152 (256)
T 2etb_A           73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV  152 (256)
T ss_dssp             TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred             cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence            2           23467999999999999999999999999999888876             99999999999999999


Q ss_pred             HHHhc---CCCCcccccccCCchHHHHHHH--hCCHH-------HHHHHhhcCCCCc-------ccccCCCCCHHHHHHH
Q 008557          244 LELIR---PDPSVLKLEDNKGNTALHIAIK--KGRTQ-------IVRCLLSIEGIDV-------NSLNKAGESPLDVAEK  304 (561)
Q Consensus       244 ~~Ll~---~~~~~~n~~d~~G~TpLh~Aa~--~g~~~-------iv~~LL~~~gad~-------n~~d~~G~TpL~~A~~  304 (561)
                      ++|++   .|+++ +.+|.+|+||||+|+.  .++.+       ++++|++ .|+++       +.+|..|+||||+|+.
T Consensus       153 ~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          153 TYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHH
Confidence            99999   88887 9999999999999999  78888       9999999 79999       9999999999999999


Q ss_pred             cCCHHHHHHHHHcCCcccc
Q 008557          305 LGNTELFSLLKEAGAAHSK  323 (561)
Q Consensus       305 ~~~~~i~~~Ll~~ga~~~~  323 (561)
                      .|+.+++++|+++|++...
T Consensus       231 ~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          231 EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhCCCCCCC
Confidence            9999999999999987643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.3e-32  Score=262.02  Aligned_cols=215  Identities=25%  Similarity=0.220  Sum_probs=195.1

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (561)
Q Consensus       113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~  192 (561)
                      ++..|..|.||||.|+..|+.++++.|++.+.      .++..|..|.||||+|+..|+.+++++|++++ .......+.
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~   74 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGY------DVRQPDKENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGD   74 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCC------CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CcchhhcCC
Confidence            45678899999999999999999999999853      47888999999999999999999999999983 233334556


Q ss_pred             CCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      .|.||||+|+..|+..+.++|.+.+.+++..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..+
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~  153 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRT  153 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhC
Confidence            6999999999999999999999999999999999999999999999999999999999987 899999999999999777


Q ss_pred             C-HHHHHHHhhcCCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          273 R-TQIVRCLLSIEGIDVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       273 ~-~~iv~~LL~~~gad~n~~d~-~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      + .+++++|++ .|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..+.+|.....
T Consensus       154 ~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          154 HSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK  218 (240)
T ss_dssp             CSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred             ChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            6 789999998 8999999997 9999999999999999999999999999988888888876543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.5e-32  Score=250.77  Aligned_cols=158  Identities=31%  Similarity=0.479  Sum_probs=134.4

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  240 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~  240 (561)
                      ++|+.||+.|+.++|++||++  +++++.+|.+|+||||+|+..++..+..+|...+.+++.+|.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence            467777777777777777776  566777777777777777777777777777777777888899999999999999999


Q ss_pred             HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      ++|++|++.|+++ |.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|+..|+.+++++|+++||+
T Consensus        84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999987 9999999999999999999999999999 8999999999999999999999999999999999998


Q ss_pred             cc
Q 008557          321 HS  322 (561)
Q Consensus       321 ~~  322 (561)
                      ++
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5e-33  Score=278.68  Aligned_cols=227  Identities=17%  Similarity=0.148  Sum_probs=201.1

Q ss_pred             ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557           66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA  145 (561)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~  145 (561)
                      .++.++..+.++++.+...|+.+..+.+.             +.+++++..  +|+||||+|+..|+.++|++|++++. 
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga-   86 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLL-------------NAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGL-   86 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHH-------------HTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC-
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHH-------------hCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence            46677788889999999999887766543             346777776  48999999999999999999999854 


Q ss_pred             cchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCC-CcHHHHHHHcCHHHHHHHHhcCCCCccccC
Q 008557          146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG-YDSFHVAAKQGHLVVKALVSKDPSTGFRTD  224 (561)
Q Consensus       146 ~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g-~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d  224 (561)
                           +++.+|..|.||||+|+..|+.+++++|+++  +.+++..+..| .||||+|+..|+..+.++|...+....  |
T Consensus        87 -----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~  157 (285)
T 3kea_A           87 -----DDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--D  157 (285)
T ss_dssp             -----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--C
T ss_pred             -----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--c
Confidence                 4788999999999999999999999999999  77888999999 799999999999999999988877652  3


Q ss_pred             C-CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchH-HHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          225 K-KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       225 ~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp-Lh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      . .|+||||+|+..|+.+++++|++.|+++ +.+|..|+|| ||+|+..|+.+++++|++ .|++++..|.       .|
T Consensus       158 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a  228 (285)
T 3kea_A          158 LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-------EN  228 (285)
T ss_dssp             CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GG
T ss_pred             ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hh
Confidence            3 8999999999999999999999999887 9999999998 999999999999999999 8999999984       56


Q ss_pred             HHcCCHHHHHHHHHcCCcccccCC
Q 008557          303 EKLGNTELFSLLKEAGAAHSKDHG  326 (561)
Q Consensus       303 ~~~~~~~i~~~Ll~~ga~~~~~~~  326 (561)
                      +..|+.+++++|+++|++......
T Consensus       229 ~~~~~~~iv~~Ll~~g~~~~~~~~  252 (285)
T 3kea_A          229 VLLDDAEIAKMIIEKHVEYKSDSY  252 (285)
T ss_dssp             GTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             hhcCCHHHHHHHHHcCCCCCCccc
Confidence            778999999999999998765443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=4.5e-33  Score=274.32  Aligned_cols=199  Identities=20%  Similarity=0.208  Sum_probs=174.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHh----cCCccchhHhhcc----CCCCCCcHHHHHH---HhCcHHHHHHHHhcCCC-
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQ----SCDANEAKDLLSK----KNQEGETPLYVAA---ESGHALIVEEMLQHMNL-  184 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~----~~~~g~TpLh~Aa---~~g~~~iv~~LL~~~~~-  184 (561)
                      +..|.|+||.||+.|+.+.++.|++    .+..      ++.    .|..|.||||+|+   ..|+.++|++|++.+.. 
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~------~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   75 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR------LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT   75 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC------TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence            5678999999999999997666666    5432      333    3478999999999   77999999999997321 


Q ss_pred             --------CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC--------------CCCCcHHHHHHhCCCHHH
Q 008557          185 --------ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD--------------KKGQTALHMAVKGQNEDI  242 (561)
Q Consensus       185 --------~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~i  242 (561)
                              ......|..|+||||+|+..|+..++++|.+.+++++..|              ..|+||||+|+..|+.++
T Consensus        76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A           76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred             cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence                    2344456689999999999999999999999999998888              689999999999999999


Q ss_pred             HHHHhc---CCCCcccccccCCchHHHHHHHhCC---------HHHHHHHhhcCCCCc-------ccccCCCCCHHHHHH
Q 008557          243 VLELIR---PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDV-------NSLNKAGESPLDVAE  303 (561)
Q Consensus       243 v~~Ll~---~~~~~~n~~d~~G~TpLh~Aa~~g~---------~~iv~~LL~~~gad~-------n~~d~~G~TpL~~A~  303 (561)
                      +++|++   .++++ +.+|..|+||||+|+..|+         .+++++|++ .|+++       +.+|..|.||||+|+
T Consensus       156 v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          156 VHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             HHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHH
Confidence            999999   88887 9999999999999999888         799999999 79998       789999999999999


Q ss_pred             HcCCHHHHHHHHHcCCcccc
Q 008557          304 KLGNTELFSLLKEAGAAHSK  323 (561)
Q Consensus       304 ~~~~~~i~~~Ll~~ga~~~~  323 (561)
                      ..|+.+++++|+++|++...
T Consensus       234 ~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          234 KTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HTTCHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHhCCCccc
Confidence            99999999999999987654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.1e-31  Score=244.44  Aligned_cols=159  Identities=28%  Similarity=0.397  Sum_probs=146.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHH
Q 008557          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (561)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~A  201 (561)
                      ++|+.||+.|+.++|+.||+.+      ++++.+|..|.||||+|+..|+.+++++|+++  +.+++.+|.+|+||||+|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G------advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A   77 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG------ADVNASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHA   77 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHH
Confidence            5799999999999999999985      44899999999999999999999999999998  778899999999999999


Q ss_pred             HHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHh
Q 008557          202 AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  281 (561)
Q Consensus       202 a~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL  281 (561)
                      +..|+..+.++|.+.+++++.+|.+|+||||+|+..|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus        78 ~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           78 AENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             hcCCCCccc
Q 008557          282 SIEGIDVNS  290 (561)
Q Consensus       282 ~~~gad~n~  290 (561)
                      + .|++++.
T Consensus       157 ~-~GA~ie~  164 (169)
T 4gpm_A          157 K-QGGWLEH  164 (169)
T ss_dssp             T-C------
T ss_pred             H-CCCCcCC
Confidence            9 8999864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.9e-31  Score=254.80  Aligned_cols=197  Identities=20%  Similarity=0.229  Sum_probs=176.9

Q ss_pred             CCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHH
Q 008557          131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVK  210 (561)
Q Consensus       131 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~  210 (561)
                      |+.+++++|++++..     ..+..|..|.||||+|+..|+.+++++|+++  +.+++..|..|.||||+|+..|+..+.
T Consensus         2 g~~~~i~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcCCC-----cccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            678889999988653     2344589999999999999999999999998  678888999999999999999999887


Q ss_pred             HHHhcCCC-CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcc
Q 008557          211 ALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN  289 (561)
Q Consensus       211 ~lL~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n  289 (561)
                      ++|...+. ..+..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++ .|++++
T Consensus        75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~  152 (223)
T 2f8y_A           75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKD  152 (223)
T ss_dssp             HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTT
T ss_pred             HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            77776554 78888999999999999999999999999999987 8999999999999999999999999999 799999


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          290 SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       290 ~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      .+|..|.||||+|+..++.+++++|+++|++++..+..+.+|.....
T Consensus       153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  199 (223)
T 2f8y_A          153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ  199 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHH
Confidence            99999999999999999999999999999999988888888876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=265.87  Aligned_cols=193  Identities=22%  Similarity=0.289  Sum_probs=178.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      +.+++|.|+..|+.+.++.++....    ...++..|..|.||||+|+..|+.++|++|++.+ ..+++..+..|+||||
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~  150 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIM  150 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHH
Confidence            4678999999999999999998743    3558999999999999999999999999999982 3478889999999999


Q ss_pred             HHH-----HcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCH
Q 008557          200 VAA-----KQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  274 (561)
Q Consensus       200 ~Aa-----~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~  274 (561)
                      +|+     ..++..+.++|...+......|..|+||||+|+..|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.
T Consensus       151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCH
Confidence            999     668888888888888888888999999999999999999999999999997 99999999999999999999


Q ss_pred             HHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       275 ~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                      +++++|++..|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus       230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999998779999999999999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=4.7e-32  Score=277.04  Aligned_cols=193  Identities=15%  Similarity=0.128  Sum_probs=115.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCccchhHhhcc-CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHH
Q 008557          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSK-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV  200 (561)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~  200 (561)
                      +.+|+|+..+..++++.|++.+      .+++. .|..|.||||+||..|+.++|++|+++  +++++.+|.+|+||||+
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~  170 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQ------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVK  170 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSC------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence            3356666666666666666553      23566 667777777777777777777777776  45666667777777777


Q ss_pred             HHHcCH----HHHHHHHhcCCCCccccCCCCCcHHHHHHh----CCCHHHHHHHhcC--------------------CCC
Q 008557          201 AAKQGH----LVVKALVSKDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRP--------------------DPS  252 (561)
Q Consensus       201 Aa~~g~----~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~  252 (561)
                      |+..|+    ..+..++....++++.+|..|+||||+|+.    .|+.+++++|++.                    +.+
T Consensus       171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~  250 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK  250 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred             HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence            777666    233444444444556666777777777776    6677777777655                    444


Q ss_pred             cccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHH
Q 008557          253 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSAT  332 (561)
Q Consensus       253 ~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~  332 (561)
                      + +.+|..|.||||.|+.      +++|++ .  ++|.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+|.
T Consensus       251 ~-~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL  320 (327)
T 1sw6_A          251 P-NDKNGERKDSILENLD------LKWIIA-N--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  320 (327)
T ss_dssp             ----------CHHHHHCS------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             c-ccccccCCChhHHHHH------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            4 6666677777777664      666666 2  4666677777777777777777777777777777766666666654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.9e-31  Score=258.92  Aligned_cols=219  Identities=18%  Similarity=0.136  Sum_probs=183.8

Q ss_pred             CCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchh
Q 008557           70 QPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK  149 (561)
Q Consensus        70 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~  149 (561)
                      .+..+.++++.+...|..+..+.+.       +  .....+.+++.+|..|.||||+|+..|+.++|++|++.+.     
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll-------~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----   69 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVI-------R--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-----   69 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCC-------C-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-----
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHH-------H--HhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----
Confidence            4455668888888888654444321       1  1113356899999999999999999999999999998854     


Q ss_pred             HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC----CCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCC
Q 008557          150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL----ETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDK  225 (561)
Q Consensus       150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~----~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~  225 (561)
                       .++.+|..|.||||+|+..|+.+++++|++++..    ......+..|.||||+|+..|+..+.++|...+.+++..|.
T Consensus        70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  148 (236)
T 1ikn_D           70 -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP  148 (236)
T ss_dssp             -CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             -CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence             4788999999999999999999999999998431    22467788999999999999999999999999999988887


Q ss_pred             -CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcc--cccCCCCCHHHHH
Q 008557          226 -KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN--SLNKAGESPLDVA  302 (561)
Q Consensus       226 -~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n--~~d~~G~TpL~~A  302 (561)
                       .|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++..  .++..|.||.+.+
T Consensus       149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          149 CNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhh
Confidence             9999999999999999999999999987 9999999999999999999999999999 899876  8889999998766


Q ss_pred             HHc
Q 008557          303 EKL  305 (561)
Q Consensus       303 ~~~  305 (561)
                      ...
T Consensus       227 ~~~  229 (236)
T 1ikn_D          227 SEF  229 (236)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-30  Score=266.33  Aligned_cols=182  Identities=21%  Similarity=0.219  Sum_probs=153.0

Q ss_pred             ccCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCc---HHHHHHHHhcCC
Q 008557          108 ERKKNKDS-PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH---ALIVEEMLQHMN  183 (561)
Q Consensus       108 ~~~~~~~~-~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~~~  183 (561)
                      +.++++|. .|..|.||||+||..|+.++|++||+++      ++++.+|..|.||||+|+..|+   .++++.|++++ 
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G------ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~-  190 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL-  190 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh-
Confidence            67899999 8999999999999999999999999985      4488999999999999999999   78888888873 


Q ss_pred             CCCCCcCCCCCCcHHHHHHH----cCHHHHHHHHhcC--------------------CCCccccCCCCCcHHHHHHhCCC
Q 008557          184 LETASIPARNGYDSFHVAAK----QGHLVVKALVSKD--------------------PSTGFRTDKKGQTALHMAVKGQN  239 (561)
Q Consensus       184 ~~~~~~~~~~g~tpLh~Aa~----~g~~~v~~lL~~~--------------------~~~~~~~d~~g~tpLh~A~~~g~  239 (561)
                      ..+++..|.+|+||||+|+.    .|+..+.++|.+.                    +.+++..|..|+||||.|+.   
T Consensus       191 ~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~---  267 (327)
T 1sw6_A          191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---  267 (327)
T ss_dssp             GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---
T ss_pred             hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH---
Confidence            35688899999999999999    8888887777654                    77888899999999999996   


Q ss_pred             HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       240 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                         +++|++.+   ++.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+..|
T Consensus       268 ---~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 ---LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             ---HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence               89999883   48899999999999999999999999999 89999999999999999998654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=8.5e-30  Score=239.24  Aligned_cols=165  Identities=22%  Similarity=0.277  Sum_probs=148.6

Q ss_pred             HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc
Q 008557          150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT  229 (561)
Q Consensus       150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t  229 (561)
                      .+++.+|..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..|+..+.++|...+.+++..|..|+|
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  103 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT  103 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence            34677888888888888888888888888887  5667778888888888888888888888888878888888999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHH
Q 008557          230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE  309 (561)
Q Consensus       230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~  309 (561)
                      |||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            999999999999999999999887 8999999999999999999999999999 79999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 008557          310 LFSLLKEAG  318 (561)
Q Consensus       310 i~~~Ll~~g  318 (561)
                      ++++|+++|
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.1e-29  Score=234.01  Aligned_cols=168  Identities=27%  Similarity=0.385  Sum_probs=108.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      +.||||.||..|+.++++.|++.++     ..++..|..|.||||+|+..|+.++|++|+++  +.+++..         
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~---------   65 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGD-----NLVNKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHIL---------   65 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCS-----GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCC---------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCc-----ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhh---------
Confidence            4578888888888888888888764     33777888888888888888888888888887  4444444         


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                                              |..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++
T Consensus        66 ------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~  120 (172)
T 3v30_A           66 ------------------------AKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEA  120 (172)
T ss_dssp             ------------------------CTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ------------------------cccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence                                    444555555555556666666666655554 5556666666666666666666666


Q ss_pred             HhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCC
Q 008557          280 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP  329 (561)
Q Consensus       280 LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~  329 (561)
                      |++ .|++++.+|..|.||||+|+..++.+++++|+++|++....+..+.
T Consensus       121 Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~  169 (172)
T 3v30_A          121 LLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA  169 (172)
T ss_dssp             HHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-----
T ss_pred             HHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCC
Confidence            665 5666666666666666666666666666666666665544444333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3.1e-29  Score=236.66  Aligned_cols=191  Identities=23%  Similarity=0.249  Sum_probs=167.4

Q ss_pred             cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557           74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS  153 (561)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  153 (561)
                      +.+++..+...|..+..+.       ++.     ..+.+++..|..|.||||+|+..|+.++|++|++.+.      +++
T Consensus         5 ~~~~L~~A~~~g~~~~v~~-------ll~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~   66 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKE-------ILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA------DIN   66 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHH-------HHT-----CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTT
T ss_pred             cccHHHHHHHhccHHHHHH-------HHH-----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCC
Confidence            3466666777776544443       332     4456899999999999999999999999999999854      478


Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCC-CCccccCCCCCcHHH
Q 008557          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDP-STGFRTDKKGQTALH  232 (561)
Q Consensus       154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~-~~~~~~d~~g~tpLh  232 (561)
                      ..|..|.||||+|+..|+.+++++|++. .+.+.+..+..|.||||+|+..|+..+.++|.+.+ .+++.+|..|+||||
T Consensus        67 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           67 LQNSISDSPYLYAGAQGRTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence            8999999999999999999999999976 36678889999999999999999998888777766 889999999999999


Q ss_pred             HHHhCCC-----HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCC
Q 008557          233 MAVKGQN-----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  285 (561)
Q Consensus       233 ~A~~~g~-----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~g  285 (561)
                      +|+..++     .+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|
T Consensus       146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~G  201 (201)
T 3hra_A          146 EAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQ-YN  201 (201)
T ss_dssp             HHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHT-CC
T ss_pred             HHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHh-cC
Confidence            9999998     99999999999998 9999999999999999999999999998 54

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.4e-29  Score=231.69  Aligned_cols=142  Identities=20%  Similarity=0.179  Sum_probs=122.9

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCC
Q 008557          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  239 (561)
Q Consensus       160 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~  239 (561)
                      .||||.|+..|+.++++.|++.+                                  +...+..|..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~----------------------------------~~~~~~~~~~g~t~L~~A~~~~~   48 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG----------------------------------DNLVNKPDERGFTPLIWASAFGE   48 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC----------------------------------SGGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC----------------------------------cccccCCCCCCCCHHHHHHHcCC
Confidence            46666666666666666666651                                  12245568889999999999999


Q ss_pred             HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 008557          240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  319 (561)
Q Consensus       240 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga  319 (561)
                      .+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        49 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A           49 IETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA  126 (172)
T ss_dssp             HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999887 9999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             cccccCCCCCCHHHHHHH
Q 008557          320 AHSKDHGKPPSATKQLKQ  337 (561)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~  337 (561)
                      +++..+..+.+|......
T Consensus       127 ~~~~~~~~g~t~l~~A~~  144 (172)
T 3v30_A          127 DLTTEADSGYTPMDLAVA  144 (172)
T ss_dssp             CTTCCCTTSCCHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHH
Confidence            999988889998766543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=4.1e-29  Score=229.01  Aligned_cols=160  Identities=20%  Similarity=0.244  Sum_probs=123.9

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  238 (561)
Q Consensus       159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g  238 (561)
                      |.||||.|+..|+.+++++|++.  +.+++..|..|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            45555555555555555555555  3444555555555555555555555555555555556667788889999999999


Q ss_pred             CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       239 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                      +.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999998887 8889999999999999999999999998 79999999999999999999999999999999988


Q ss_pred             Cccc
Q 008557          319 AAHS  322 (561)
Q Consensus       319 a~~~  322 (561)
                      ++..
T Consensus       159 ~~~~  162 (167)
T 3v31_A          159 LKLL  162 (167)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.6e-29  Score=250.99  Aligned_cols=222  Identities=17%  Similarity=0.183  Sum_probs=170.1

Q ss_pred             cccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCC----CCCCCCChHHHHHHHc---CCHHHHHHH
Q 008557           67 IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKD----SPGKRGDLQLHLAARA---GNLSRVMEI  139 (561)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~G~T~Lh~Aa~~---g~~~~v~~L  139 (561)
                      .+..+..+.++++.+...|..+..+.+....   .      +.+.+++    ..|..|+||||+||..   |+.++|++|
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---~------~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFL---Q------RSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHH---H------HSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHH---h------hcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            4456667778999999999877766544321   1      2344444    4588999999999987   999999999


Q ss_pred             HhcCCcc-chhHhhcc----CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC--------------CCCcHHHH
Q 008557          140 LQSCDAN-EAKDLLSK----KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR--------------NGYDSFHV  200 (561)
Q Consensus       140 l~~~~~~-~~~~~~~~----~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~--------------~g~tpLh~  200 (561)
                      ++.+... ....+++.    .|..|.||||+|+..|+.++|++|+++  +.+++..+.              .|.||||+
T Consensus        77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~  154 (273)
T 2pnn_A           77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSL  154 (273)
T ss_dssp             HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred             HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHH
Confidence            9985421 11122333    677999999999999999999999998  667777776              79999999


Q ss_pred             HHHcCHHHHHHHHhc---CCCCccccCCCCCcHHHHHHhCCC---------HHHHHHHhcCCCCcc------cccccCCc
Q 008557          201 AAKQGHLVVKALVSK---DPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSVL------KLEDNKGN  262 (561)
Q Consensus       201 Aa~~g~~~v~~lL~~---~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------n~~d~~G~  262 (561)
                      |+..|+..+.++|.+   .+.+++.+|..|+||||+|+..|+         .+++++|++.|+++.      +.+|..|+
T Consensus       155 A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~  234 (273)
T 2pnn_A          155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL  234 (273)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCC
Confidence            999999999999998   899999999999999999999888         899999999988762      35899999


Q ss_pred             hHHHHHHHhCCHHHHHHHhhcCCC-CcccccCCCCCHHH
Q 008557          263 TALHIAIKKGRTQIVRCLLSIEGI-DVNSLNKAGESPLD  300 (561)
Q Consensus       263 TpLh~Aa~~g~~~iv~~LL~~~ga-d~n~~d~~G~TpL~  300 (561)
                      ||||+|+..|+.+++++|++ .|+ |+......+.+|-+
T Consensus       235 TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          235 TPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-HHTC--------------
T ss_pred             CHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhccC
Confidence            99999999999999999999 688 88888777776643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=5.1e-29  Score=226.93  Aligned_cols=157  Identities=25%  Similarity=0.331  Sum_probs=118.0

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  238 (561)
Q Consensus       159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g  238 (561)
                      ..||||.|+..|+.+++++|+++  +.+++..+..|.||||+|+. |+..+.++|.+.+.+++.+|..|+||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            44666666666666666666665  44555666666666666666 6666666666666666677778888888888888


Q ss_pred             CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC-cccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-VNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       239 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad-~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      +.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           82 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            888888888888776 7888888888888888888888888888 5666 588888888888888888888888888888


Q ss_pred             CCc
Q 008557          318 GAA  320 (561)
Q Consensus       318 ga~  320 (561)
                      ||+
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=8e-29  Score=232.59  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=152.9

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCC
Q 008557          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (561)
Q Consensus       113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~  192 (561)
                      +|.+|..|+||||+|+..|+.++++.|++.+      ..++..|..|.||||+|+..|+.+++++|+++  +.+++..|.
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~   99 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDF   99 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCT
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc------cccccccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCC
Confidence            3578999999999999999999999999984      44788999999999999999999999999998  678888999


Q ss_pred             CCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          193 NGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       193 ~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      .|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFG  178 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999987 999999999999999999


Q ss_pred             CHHHHHHHhhc
Q 008557          273 RTQIVRCLLSI  283 (561)
Q Consensus       273 ~~~iv~~LL~~  283 (561)
                      +.+++++|++.
T Consensus       179 ~~~~v~~Ll~~  189 (192)
T 2rfm_A          179 RQEVIKIFTEV  189 (192)
T ss_dssp             CHHHHHHHHHH
T ss_pred             cHHHHHHHHhc
Confidence            99999999983

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.7e-28  Score=225.72  Aligned_cols=158  Identities=28%  Similarity=0.396  Sum_probs=119.9

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh
Q 008557          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK  236 (561)
Q Consensus       157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~  236 (561)
                      ..+.||||.||..|+.++|++|+++  +.+++..|.+|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            3445556666666666666666555  34455555556666666666665555555555555666677888889999999


Q ss_pred             CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      .|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++
T Consensus        90 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999999999988887 8888899999999999999999999998 789999999999999999999999999999988


Q ss_pred             cC
Q 008557          317 AG  318 (561)
Q Consensus       317 ~g  318 (561)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            76

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6.9e-29  Score=226.04  Aligned_cols=160  Identities=25%  Similarity=0.310  Sum_probs=147.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      ....||||.|+..|+.++++.|++.+.      .++..|..|.||||+|+. |+.+++++|+++  +.+++..+..|.||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~------~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~   73 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNV------NVNAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAV   73 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCC------CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCC------CccccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence            346799999999999999999998753      378899999999999999 999999999998  67888899999999


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  277 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv  277 (561)
                      ||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.+++.++..|..|+||||+|+..|+.+++
T Consensus        74 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999987799999999999999999999999


Q ss_pred             HHHhhcCCCC
Q 008557          278 RCLLSIEGID  287 (561)
Q Consensus       278 ~~LL~~~gad  287 (561)
                      ++|++ .|+|
T Consensus       154 ~~Ll~-~GAd  162 (162)
T 1ihb_A          154 SLMQA-NGAG  162 (162)
T ss_dssp             HHHHH-TC--
T ss_pred             HHHHH-hCCC
Confidence            99999 7875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=3.6e-29  Score=245.85  Aligned_cols=203  Identities=20%  Similarity=0.193  Sum_probs=167.9

Q ss_pred             cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHhcCCcc
Q 008557           74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDS----PGKRGDLQLHLAARA---GNLSRVMEILQSCDAN  146 (561)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~  146 (561)
                      +.++++.+...|..+..+.+..   .++      +.+.+++.    .|..|+||||+|+..   |+.++|+.|++.+...
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~---~l~------~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   72 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLE---YLR------WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS   72 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHH---HHH------HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHH---HHH------HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc
Confidence            3466777777777665543322   111      45788888    899999999999999   9999999999985421


Q ss_pred             c-----hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC-------------CCcHHHHHHHcCHHH
Q 008557          147 E-----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN-------------GYDSFHVAAKQGHLV  208 (561)
Q Consensus       147 ~-----~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~-------------g~tpLh~Aa~~g~~~  208 (561)
                      .     ........|..|.||||+|+..|+.++|++|+++  +.+++..+..             |.||||+|+..|+..
T Consensus        73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~  150 (256)
T 2etb_A           73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD  150 (256)
T ss_dssp             TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred             cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            1     0000113457899999999999999999999998  6677777776             999999999999999


Q ss_pred             HHHHHhc---CCCCccccCCCCCcHHHHHHh--CCCHH-------HHHHHhcCCCCcc------cccccCCchHHHHHHH
Q 008557          209 VKALVSK---DPSTGFRTDKKGQTALHMAVK--GQNED-------IVLELIRPDPSVL------KLEDNKGNTALHIAIK  270 (561)
Q Consensus       209 v~~lL~~---~~~~~~~~d~~g~tpLh~A~~--~g~~~-------iv~~Ll~~~~~~~------n~~d~~G~TpLh~Aa~  270 (561)
                      +.++|.+   .+++++.+|..|+||||+|+.  .++.+       ++++|++.|+++.      +.+|..|+||||+|+.
T Consensus       151 ~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence            9999998   899999999999999999999  88988       9999999987763      7899999999999999


Q ss_pred             hCCHHHHHHHhhcCCCCc
Q 008557          271 KGRTQIVRCLLSIEGIDV  288 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad~  288 (561)
                      .|+.+++++|++ +|.+.
T Consensus       231 ~g~~~~v~~Ll~-~g~~~  247 (256)
T 2etb_A          231 EGKIEIFRHILQ-REFSG  247 (256)
T ss_dssp             TTCHHHHHHHHH-HHHHH
T ss_pred             hCCHHHHHHHHh-CCCCC
Confidence            999999999999 56544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.6e-29  Score=226.73  Aligned_cols=159  Identities=25%  Similarity=0.325  Sum_probs=113.0

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh
Q 008557          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK  236 (561)
Q Consensus       157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~  236 (561)
                      .+|.||||.|+..|+.++++.|++. .+.+....+..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+.
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            3344444444444444444444443 123333344444444444444444444444444455556667788899999999


Q ss_pred             CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      .|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|.. ++.+++++|++
T Consensus        85 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             cCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            99999999999998887 8889999999999999999999999998 799999999999999999776 88899999998


Q ss_pred             cCC
Q 008557          317 AGA  319 (561)
Q Consensus       317 ~ga  319 (561)
                      +||
T Consensus       162 ~gA  164 (165)
T 3twr_A          162 DAA  164 (165)
T ss_dssp             C--
T ss_pred             ccc
Confidence            886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.8e-28  Score=227.66  Aligned_cols=165  Identities=22%  Similarity=0.275  Sum_probs=116.3

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCC
Q 008557          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  238 (561)
Q Consensus       159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g  238 (561)
                      +.||||.||..|+.++|++|++. .+.+++..+..|.||||+|+..|+..+.++|...+.+++..|..|+||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            44445555555555555555444 23334444444555555555555544444444445555566777888888888888


Q ss_pred             CHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       239 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                      +.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus        84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888876 8888888888888888888888888888 78888888888888888888888888888888888


Q ss_pred             CcccccCC
Q 008557          319 AAHSKDHG  326 (561)
Q Consensus       319 a~~~~~~~  326 (561)
                      ++++....
T Consensus       162 ~~~~~~~~  169 (179)
T 3f6q_A          162 QNLNRIPY  169 (179)
T ss_dssp             CCCSCBCC
T ss_pred             cCcccCCc
Confidence            88765433

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.2e-28  Score=224.07  Aligned_cols=159  Identities=20%  Similarity=0.288  Sum_probs=149.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF  198 (561)
Q Consensus       119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL  198 (561)
                      .|.||||.|+..|+.++++.|++.+.      .++..|..|.||||+|+..|+.+++++|+++  +.+++..+..|.|||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L   73 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN------VINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESAL   73 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC------CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHH
Confidence            58899999999999999999999853      3889999999999999999999999999998  678888999999999


Q ss_pred             HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557          199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  278 (561)
Q Consensus       199 h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~  278 (561)
                      |+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987 899999999999999999999999


Q ss_pred             HHhhcCCCC
Q 008557          279 CLLSIEGID  287 (561)
Q Consensus       279 ~LL~~~gad  287 (561)
                      +|++ ++.+
T Consensus       153 ~L~~-~~~~  160 (167)
T 3v31_A          153 VIES-HLLK  160 (167)
T ss_dssp             HHHH-HHHH
T ss_pred             HHHH-HHHH
Confidence            9998 4443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=6.5e-28  Score=240.28  Aligned_cols=166  Identities=23%  Similarity=0.322  Sum_probs=154.2

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHH-----HhCcHHHHHHHHhcCCCCCC
Q 008557          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA-----ESGHALIVEEMLQHMNLETA  187 (561)
Q Consensus       113 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa-----~~g~~~iv~~LL~~~~~~~~  187 (561)
                      +|.+|..|+||||+||..|+.++|+.|++.+..     +++..|..|.||||+|+     ..|+.+++++|++.  +...
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~--g~~~  176 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVC-----KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL--GNIN  176 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC-----CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH--SCTT
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc--CCCc
Confidence            567899999999999999999999999998752     38899999999999999     77999999999998  5667


Q ss_pred             CcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhc-CCCCcccccccCCchHHH
Q 008557          188 SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALH  266 (561)
Q Consensus       188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh  266 (561)
                      ...+..|.||||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..|+.+++++|++ .|+++ +.+|.+|+||||
T Consensus       177 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~  255 (276)
T 4hbd_A          177 AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALM  255 (276)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHH
Confidence            7788999999999999999999999999999999999999999999999999999999999 77776 999999999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCC
Q 008557          267 IAIKKGRTQIVRCLLSIEGI  286 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~ga  286 (561)
                      +|+..|+.+++++|+++.++
T Consensus       256 ~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          256 VALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHHcCCHHHHHHHHhccCC
Confidence            99999999999999996543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3e-28  Score=226.10  Aligned_cols=169  Identities=18%  Similarity=0.199  Sum_probs=156.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      +.+.++||.||..|+.++|+.|++.++.     +++..|..|.||||+|+..|+.+++++|+++  +.+++..|.+|.||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~   75 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEN-----DLNQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTP   75 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTS-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcc-----cccccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence            4678999999999999999999998653     4888999999999999999999999999998  67888899999999


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  277 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv  277 (561)
                      ||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987 99999999999999999999999


Q ss_pred             HHHhhcCCCCcccccCCC
Q 008557          278 RCLLSIEGIDVNSLNKAG  295 (561)
Q Consensus       278 ~~LL~~~gad~n~~d~~G  295 (561)
                      ++|++ .|++++..+..+
T Consensus       155 ~~L~~-~g~~~~~~~~~~  171 (179)
T 3f6q_A          155 ERAEK-MGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHH-TTCCCSCBCCCC
T ss_pred             HHHHH-hhcCcccCCccc
Confidence            99999 899999887665

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=7.5e-28  Score=221.36  Aligned_cols=158  Identities=28%  Similarity=0.353  Sum_probs=147.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (561)
Q Consensus       116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~  195 (561)
                      ....+.|+||.||+.|+.++|++|++++.      +++..|..|.||||+|+..|+.+++++|+++  +.+++..|..|.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~   81 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGA------DVNAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGM   81 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCC
Confidence            45677899999999999999999999854      4788999999999999999999999999998  678888999999


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+
T Consensus        82 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E           82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHH
Confidence            9999999999999999999999999999999999999999999999999999999987 899999999999999999999


Q ss_pred             HHHHHhh
Q 008557          276 IVRCLLS  282 (561)
Q Consensus       276 iv~~LL~  282 (561)
                      ++++|++
T Consensus       161 ~~~~L~~  167 (169)
T 2y1l_E          161 LAEILQK  167 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999998

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.2e-27  Score=216.15  Aligned_cols=150  Identities=25%  Similarity=0.332  Sum_probs=119.0

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCC
Q 008557          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  239 (561)
Q Consensus       160 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~  239 (561)
                      .||||.|+..|+.+++++|++.+  .+.. .+..|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            46666666666666666666662  2222 45566666666666666666666666666667778888899999999999


Q ss_pred             HHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 008557          240 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  314 (561)
Q Consensus       240 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~L  314 (561)
                      .+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999988887 8888999999999999999999999998 7999999999999999999999999998876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.2e-27  Score=216.39  Aligned_cols=152  Identities=24%  Similarity=0.347  Sum_probs=102.9

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  240 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~  240 (561)
                      ||||.|+..|+.+++++|++. .+.+++..+..|.||||+ +..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             hHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            445555555555555555444 233444444445555555 444444444444444555555677778888888888888


Q ss_pred             HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      +++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ . ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        82 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888887776 7778888888888888888888888887 4 78888888888888888888888888887763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=4.3e-28  Score=221.73  Aligned_cols=161  Identities=25%  Similarity=0.257  Sum_probs=147.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (561)
Q Consensus       116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~  195 (561)
                      .|..|+||||.|++.|+.++++.|++..+     ...+..+..|.||||+|+..|+.+++++|+++  +.+++..|.+|.
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~   76 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGL   76 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC-----CCccccccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCC
Confidence            46788999999999999999999998754     34778889999999999999999999999998  678889999999


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+. |+.+
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHH
T ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChH
Confidence            9999999999999999999999999999999999999999999999999999999987 9999999999999877 9999


Q ss_pred             HHHHHhhcCCC
Q 008557          276 IVRCLLSIEGI  286 (561)
Q Consensus       276 iv~~LL~~~ga  286 (561)
                      ++++|++ .|+
T Consensus       155 i~~~L~~-~gA  164 (165)
T 3twr_A          155 IQDLLRG-DAA  164 (165)
T ss_dssp             HHHHHHT-C--
T ss_pred             HHHHHhh-ccc
Confidence            9999998 564

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=3.8e-27  Score=212.85  Aligned_cols=151  Identities=25%  Similarity=0.302  Sum_probs=141.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      +.||||.|++.|+.++++.|++.+.+      ++ .|..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~------~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~   72 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAP------FT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC------CC-CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCC------CC-cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence            46899999999999999999998653      23 588999999999999999999999998  6778889999999999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                      +|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987 9999999999999999999999998


Q ss_pred             H
Q 008557          280 L  280 (561)
Q Consensus       280 L  280 (561)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            7

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.9e-27  Score=213.92  Aligned_cols=153  Identities=24%  Similarity=0.290  Sum_probs=143.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      |.||||.|+..|+.++++.|++..+     ..++..|..|.||||+ +..|+.+++++|+++  +.+++..|..|.||||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~   73 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHREL-----VHPDALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTC-----CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhC-----cCccccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHH
Confidence            5699999999999999999999832     3478899999999999 999999999999998  6788899999999999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                      +|+..|+..+.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++. +++ +.+|.+|.||||+|+..|+.+++++
T Consensus        74 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 665 9999999999999999999999999


Q ss_pred             Hhh
Q 008557          280 LLS  282 (561)
Q Consensus       280 LL~  282 (561)
                      |++
T Consensus       152 Ll~  154 (156)
T 1bd8_A          152 LQG  154 (156)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            997

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=8.2e-28  Score=236.58  Aligned_cols=203  Identities=19%  Similarity=0.180  Sum_probs=164.6

Q ss_pred             cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCC----CCCChHHHHHH---HcCCHHHHHHHHhcCCcc
Q 008557           74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPG----KRGDLQLHLAA---RAGNLSRVMEILQSCDAN  146 (561)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~G~T~Lh~Aa---~~g~~~~v~~Ll~~~~~~  146 (561)
                      +.+++..+...|..+..+.+...   ++      +.+.+++..+    ..|.||||+|+   +.|+.++|+.|++.+...
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~---l~------~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   75 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSF---LL------THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT   75 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHH---HH------HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHH---HH------hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence            34666777777776655443321   11      2455566444    77999999999   779999999999985421


Q ss_pred             c-----hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC--------------CCCCcHHHHHHHcCHH
Q 008557          147 E-----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA--------------RNGYDSFHVAAKQGHL  207 (561)
Q Consensus       147 ~-----~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~--------------~~g~tpLh~Aa~~g~~  207 (561)
                      .     .....+..|..|.||||+|+..|+.++|++|+++  +.+++..+              ..|.||||+|+..|+.
T Consensus        76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  153 (260)
T 3jxi_A           76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP  153 (260)
T ss_dssp             TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred             cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence            1     0122455566999999999999999999999998  67777777              6899999999999999


Q ss_pred             HHHHHHhc---CCCCccccCCCCCcHHHHHHhCCC---------HHHHHHHhcCCCCcc------cccccCCchHHHHHH
Q 008557          208 VVKALVSK---DPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSVL------KLEDNKGNTALHIAI  269 (561)
Q Consensus       208 ~v~~lL~~---~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------n~~d~~G~TpLh~Aa  269 (561)
                      .+.++|.+   .+++++.+|..|+||||+|+..++         .+++++|++.|+++.      +.+|..|+||||+|+
T Consensus       154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence            99999999   899999999999999999998877         799999999987752      678999999999999


Q ss_pred             HhCCHHHHHHHhhcCCCCc
Q 008557          270 KKGRTQIVRCLLSIEGIDV  288 (561)
Q Consensus       270 ~~g~~~iv~~LL~~~gad~  288 (561)
                      ..|+.+++++||+ +|.+.
T Consensus       234 ~~g~~~~v~~Ll~-~g~~~  251 (260)
T 3jxi_A          234 KTGKIGIFQHIIR-REIAD  251 (260)
T ss_dssp             HTTCHHHHHHHHH-HHHHH
T ss_pred             HcCCHHHHHHHHH-hCCCc
Confidence            9999999999999 56543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.8e-30  Score=249.27  Aligned_cols=187  Identities=20%  Similarity=0.137  Sum_probs=167.5

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +..+..|.||||+||..|+.++|+.|++.+.      +++..|..|.||||+||..|+.++|++|+++  +.+++..|..
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~   86 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMN------DPSQPNEEGITALHNAICGANYSIVDFLITA--GANVNSPDSH   86 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCC
Confidence            3445667889999999999999999999854      4788999999999999999999999999998  6788899999


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCCCCccccC-CCCCcHHHHH--HhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-KKGQTALHMA--VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                      |+||||+|+..|+..+.++|.+.+++++..| ..|+||||+|  +..|+.+++++|++.|+++ +..|..|.||||.++.
T Consensus        87 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~  165 (229)
T 2vge_A           87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSA  165 (229)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhh
Confidence            9999999999999999999999999988886 6999999999  9999999999999999987 8899999999997655


Q ss_pred             hCCHHHHHHHhhcCCCC--cccccCCCCCHHHHHHHcCCHHHHHH
Q 008557          271 KGRTQIVRCLLSIEGID--VNSLNKAGESPLDVAEKLGNTELFSL  313 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad--~n~~d~~G~TpL~~A~~~~~~~i~~~  313 (561)
                      .+.   .++|++ .|++  ++.+|..|+||||+|+..|+.++++.
T Consensus       166 ~~~---~~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          166 EFG---DELSFR-EGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             SST---TBCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             ccc---cccCcc-ccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            543   367777 7888  78899999999999999999888764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.1e-28  Score=237.25  Aligned_cols=180  Identities=18%  Similarity=0.171  Sum_probs=124.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCc
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD  196 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~t  196 (561)
                      +..|.||||.|++.|+.+.++.||+++.+      ++. +..|.||||+|+..|+.++|++|++.  +.+++..|.+|.|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~------~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t   72 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMR------VKF-NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGIT   72 (239)
T ss_dssp             ------------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCC------ccc-CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence            45689999999999999999999998643      443 47789999999999999999999988  5678888899999


Q ss_pred             HHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCc-hHHHHH--HHhCC
Q 008557          197 SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIA--IKKGR  273 (561)
Q Consensus       197 pLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~A--a~~g~  273 (561)
                      |||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|. ||||+|  +..|+
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~  151 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGY  151 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhcc
Confidence            999999999998888888888888888999999999999999999999999998887 77777666 999998  77888


Q ss_pred             HHHHHHHhhcCCCCcccc---------cCCCCCHHHHHHHcCC
Q 008557          274 TQIVRCLLSIEGIDVNSL---------NKAGESPLDVAEKLGN  307 (561)
Q Consensus       274 ~~iv~~LL~~~gad~n~~---------d~~G~TpL~~A~~~~~  307 (561)
                      .+++++|++ .|++++..         |..+.++++++...|.
T Consensus       152 ~~~~~~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          152 TQCSQFLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CCHHHHHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999999998 67777665         5567888887776654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=4.8e-27  Score=228.77  Aligned_cols=164  Identities=18%  Similarity=0.152  Sum_probs=122.8

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      +..|.||||.|+..|+.++++.|+++  +.+.+. +..|.||||.|+..|+..+.++|...+.+++.+|..|+||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            35699999999999999999999998  455554 367899999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCC-CHHHHH--HHcCCHHHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE-SPLDVA--EKLGNTELFS  312 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~-TpL~~A--~~~~~~~i~~  312 (561)
                      ..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|. ||||+|  +..|+.++++
T Consensus        79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            999999999999999987 9999999999999999999999999999 8999999998887 999999  7789999999


Q ss_pred             HHHHcCCccccc
Q 008557          313 LLKEAGAAHSKD  324 (561)
Q Consensus       313 ~Ll~~ga~~~~~  324 (561)
                      +|+++|++++..
T Consensus       157 ~Ll~~~a~~~~~  168 (239)
T 1ycs_B          157 FLYGVQEKMGIM  168 (239)
T ss_dssp             HHHHHHHHTTTT
T ss_pred             HHHHhhhccccc
Confidence            999999987654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=2e-25  Score=197.44  Aligned_cols=130  Identities=15%  Similarity=0.204  Sum_probs=103.0

Q ss_pred             CcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccC-CchHHH
Q 008557          188 SIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK-GNTALH  266 (561)
Q Consensus       188 ~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~-G~TpLh  266 (561)
                      +..+..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+. |+.+++++|++.++++ +.+|.. |+||||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~   83 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVH   83 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHH
Confidence            3334444444444444444444444444444455667788999999999 9999999999999887 888988 999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus        84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999998 8999999999999999999999999999999999885

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2e-25  Score=202.35  Aligned_cols=146  Identities=18%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc-H
Q 008557          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT-A  230 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t-p  230 (561)
                      .+..+..|.||||+|+..|+.++|++|+++  +.+++..|..|+||||+|+ .|+..+.++|.+.+.+++.+|..|+| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            345566777888888888888888888876  5566667777777777764 66676767776667777777888888 8


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       231 Lh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      ||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            88888888888888888888877 8888888888888888888888888888 7888888888888887643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=5.9e-27  Score=226.82  Aligned_cols=187  Identities=16%  Similarity=0.158  Sum_probs=155.6

Q ss_pred             HHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhc
Q 008557          136 VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSK  215 (561)
Q Consensus       136 v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~  215 (561)
                      ++.||+++...   ...+..+..|.||||+|+..|+.++|++|++.  +.+++..|.+|.||||+|+..|+..+.++|.+
T Consensus         1 v~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRKAGSP---RKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ---------CC---CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CeehhccCCCC---ccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45677765542   22456677888999999999999999999998  66888899999999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccc-cCCchHHHHH--HHhCCHHHHHHHhhcCCCCccccc
Q 008557          216 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIA--IKKGRTQIVRCLLSIEGIDVNSLN  292 (561)
Q Consensus       216 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d-~~G~TpLh~A--a~~g~~~iv~~LL~~~gad~n~~d  292 (561)
                      .+++++..|..|+||||+|+..|+.+++++|++.|+++ +..| .+|+||||+|  +..|+.+++++|++ .|++++.+|
T Consensus        76 ~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~  153 (229)
T 2vge_A           76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMN  153 (229)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSG
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCccccc
Confidence            99999999999999999999999999999999999998 7765 6999999999  99999999999999 799999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCc--ccccCCCCCCHH
Q 008557          293 KAGESPLDVAEKLGNTELFSLLKEAGAA--HSKDHGKPPSAT  332 (561)
Q Consensus       293 ~~G~TpL~~A~~~~~~~i~~~Ll~~ga~--~~~~~~~~~~~~  332 (561)
                      ..|.||++.+....   ..++|++.|++  .+..+..+.+|.
T Consensus       154 ~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL  192 (229)
T 2vge_A          154 SGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDW  192 (229)
T ss_dssp             GGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSE
T ss_pred             CCchHHHHHHhhcc---ccccCccccccccccccCCCcccHH
Confidence            99999998655443   33678889998  455566666654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=6.2e-26  Score=212.34  Aligned_cols=156  Identities=8%  Similarity=0.037  Sum_probs=106.0

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCCcHHHHHHHcCHH----HHHHHHhcCCCCccccCCCCCcHHHHH
Q 008557          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHVAAKQGHL----VVKALVSKDPSTGFRTDKKGQTALHMA  234 (561)
Q Consensus       160 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~----~v~~lL~~~~~~~~~~d~~g~tpLh~A  234 (561)
                      .++||.|++.|+.+.++.++..  +  .+..+ ..|+||||+|+..|+.    .+.++|...|++++.+|..|+||||+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            3455555555555555555544  1  11222 4455555555555542    244555555555555666666666666


Q ss_pred             HhCCC------HHHHHHHhcCCCCcccccccCCc-hHHHHHHHhC-----CHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          235 VKGQN------EDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKG-----RTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       235 ~~~g~------~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~Aa~~g-----~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      +..|+      .+++++|+++|+++ |.+|..|+ ||||+|+..+     +.+++++|++..|+|+|.+|..|.||||+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            66554      57888888888887 88888888 8888888843     456888888756899999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCc
Q 008557          303 EKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       303 ~~~~~~~i~~~Ll~~ga~  320 (561)
                      ++.++.+++++|.+...+
T Consensus       162 ~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            999999999888876543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=4.3e-27  Score=243.95  Aligned_cols=157  Identities=19%  Similarity=0.202  Sum_probs=129.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC---CCcCCCC
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET---ASIPARN  193 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~---~~~~~~~  193 (561)
                      +.+++||||+||+.|+.++|++|++.+..+   ...+..|..|.||||+||..|+.++|++|++++  ++   .+..+.+
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g--ad~~~~~i~~~~  163 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSD---EIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--PTEIMAMIQAEN  163 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CC---SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTTHHHHHSHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcH---HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccccCCCC
Confidence            455679999999999999999999986532   112344567889999999999999999999983  22   2333334


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCCCCccc--cCCCCCcHHHHHH-hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDPSTGFR--TDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                       .||||+|+..|+.+++++|...+++++.  .|..|+||||+|+ .+|+.++|++|++.++        .|.||||+|+.
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~  234 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFE  234 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTT
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHH
Confidence             8999999999999999999999888766  7888999999999 9999999999998652        38899999999


Q ss_pred             hCCHHHHHHHhhcCCCCc
Q 008557          271 KGRTQIVRCLLSIEGIDV  288 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad~  288 (561)
                      .|+.+++++|++ .|+++
T Consensus       235 ~g~~evv~lL~~-~ga~~  251 (376)
T 2aja_A          235 YGEKYVNPFIAR-HVNRL  251 (376)
T ss_dssp             TTTTTHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHh-cCccc
Confidence            999999999997 45544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.1e-25  Score=210.70  Aligned_cols=161  Identities=11%  Similarity=0.028  Sum_probs=140.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCC-CCCCcHHHHHHHhCcH----HHHHHHHhcCCCCCCCcCCCCC
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN-QEGETPLYVAAESGHA----LIVEEMLQHMNLETASIPARNG  194 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~TpLh~Aa~~g~~----~iv~~LL~~~~~~~~~~~~~~g  194 (561)
                      +.++||.||+.|+.+.++.++..+.        +..+ ..|+||||+|+..|+.    +++++|+++  +++++.+|.+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g   75 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--------EDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEG   75 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCC
Confidence            5689999999999999999997643        3334 6799999999999975    599999998  78899999999


Q ss_pred             CcHHHHHHHcCH------HHHHHHHhcCCCCccccCCCCC-cHHHHHHhCC-----CHHHHHHHhc-CCCCcccccccCC
Q 008557          195 YDSFHVAAKQGH------LVVKALVSKDPSTGFRTDKKGQ-TALHMAVKGQ-----NEDIVLELIR-PDPSVLKLEDNKG  261 (561)
Q Consensus       195 ~tpLh~Aa~~g~------~~v~~lL~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~n~~d~~G  261 (561)
                      +||||+|+..|+      ..+.++|.+.+++++.+|..|+ ||||+|+..+     +.+++++|++ .|+++ +.+|..|
T Consensus        76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G  154 (186)
T 3t8k_A           76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWG  154 (186)
T ss_dssp             CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTS
T ss_pred             CcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCC
Confidence            999999999986      4778889999999999999999 9999999954     3569999999 89887 9999999


Q ss_pred             chHHHHHHHhCCHHHHHHHhhcCCCCccccc
Q 008557          262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLN  292 (561)
Q Consensus       262 ~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d  292 (561)
                      +||||+|+..|+.++|++|++ ...+.+.++
T Consensus       155 ~TpL~~A~~~~~~~~v~~L~~-~~~~~~~~~  184 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKMMED-YIKKYNLKE  184 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHHHHH-HHHHHTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-HHHHHhccc
Confidence            999999999999999999998 444455444

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=8.4e-25  Score=193.43  Aligned_cols=131  Identities=20%  Similarity=0.200  Sum_probs=80.4

Q ss_pred             hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCC-CCcH
Q 008557          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKK-GQTA  230 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~-g~tp  230 (561)
                      ++..|..|.||||+|+..|+.+++++|+++  +.+++..|..|+||||+|+. |+..+.++|.+.+.+++.+|.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            333444444444444444444444444443  23333444444444444444 4444444444444445556666 7888


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC
Q 008557          231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  287 (561)
Q Consensus       231 Lh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad  287 (561)
                      ||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            88888888888888888888776 7788888888888888888888888887 5664

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.3e-24  Score=197.05  Aligned_cols=145  Identities=19%  Similarity=0.151  Sum_probs=117.5

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +..+..|.||||+|+..|+.++|++|++++.      .++..|..|.||||+|+ .|+.+++++|+++  +.+++.+|..
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~   76 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGA------NPNAPNSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPA   76 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTC------CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCC
Confidence            3457889999999999999999999998843      48889999999999996 9999999999998  6788999999


Q ss_pred             CCc-HHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHH
Q 008557          194 GYD-SFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  268 (561)
Q Consensus       194 g~t-pLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  268 (561)
                      |.| |||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||.+.+
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP  151 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence            999 999999999999999999999999999999999999999999999999999999998 99999999998854

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.3e-23  Score=180.39  Aligned_cols=126  Identities=37%  Similarity=0.594  Sum_probs=99.4

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhC
Q 008557          158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKG  237 (561)
Q Consensus       158 ~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~  237 (561)
                      +|.||||+|+..|+.+++++|+++  +.+                                 ++..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~---------------------------------~~~~~~~g~t~L~~A~~~   45 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GAD---------------------------------VNAKDKNGRTPLHLAARN   45 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH--TCC---------------------------------TTCCCTTSCCHHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc--CCC---------------------------------CCCcCCCCCcHHHHHHHc
Confidence            466777777777777777777766  222                                 334566777888888888


Q ss_pred             CCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       238 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      |+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++
T Consensus        46 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           46 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            8888888888887776 7788888888888888888888888888 7888888888888888888888888888888888


Q ss_pred             CCc
Q 008557          318 GAA  320 (561)
Q Consensus       318 ga~  320 (561)
                      ||+
T Consensus       124 Gad  126 (126)
T 1n0r_A          124 GAY  126 (126)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.6e-23  Score=185.09  Aligned_cols=126  Identities=28%  Similarity=0.353  Sum_probs=97.0

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      ...+.||||+|+..|+.+++++|+++                                   +.+++..|..|+||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-----------------------------------g~~~~~~~~~g~t~L~~A~   55 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-----------------------------------GADVNAKDEYGLTPLYLAT   55 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-----------------------------------TCCTTCCCTTSCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-----------------------------------CCCCCCcCCCCCCHHHHHH
Confidence            34455666666666666666666655                                   3344455677788888888


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  315 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll  315 (561)
                      ..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+
T Consensus        56 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  133 (136)
T 2jab_A           56 AHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQ  133 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            888888888888888776 7888888888888888888888888888 78888888888888888888888888888888


Q ss_pred             HcC
Q 008557          316 EAG  318 (561)
Q Consensus       316 ~~g  318 (561)
                      ++|
T Consensus       134 ~~G  136 (136)
T 2jab_A          134 KLN  136 (136)
T ss_dssp             HC-
T ss_pred             HcC
Confidence            876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=8.3e-23  Score=176.87  Aligned_cols=126  Identities=34%  Similarity=0.552  Sum_probs=99.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF  198 (561)
Q Consensus       119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL  198 (561)
                      +|+||||+|+..|+.+++++|++.      +..++..|..|.||||+|+..|+.+++++|+++  +.+++.         
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~---------   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNA---------   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTC---------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcc---------
Confidence            589999999999999999999986      566889999999999999999999999999997  444333         


Q ss_pred             HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557          199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  278 (561)
Q Consensus       199 h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~  278 (561)
                                              +|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.++++
T Consensus        64 ------------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~  118 (126)
T 1n0r_A           64 ------------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK  118 (126)
T ss_dssp             ------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ------------------------cCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHH
Confidence                                    3555666777777777777777777776665 666777777777777777777777


Q ss_pred             HHhhcCCCC
Q 008557          279 CLLSIEGID  287 (561)
Q Consensus       279 ~LL~~~gad  287 (561)
                      +|++ .|+|
T Consensus       119 ~Ll~-~Gad  126 (126)
T 1n0r_A          119 LLLE-AGAY  126 (126)
T ss_dssp             HHHH-HTCC
T ss_pred             HHHH-cCCC
Confidence            7776 5654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=6.8e-23  Score=181.12  Aligned_cols=126  Identities=30%  Similarity=0.387  Sum_probs=84.3

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCC
Q 008557          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG  194 (561)
Q Consensus       115 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g  194 (561)
                      .....|.||||+||..|+.++++.|++.      +.+++..|..|.||||+|+..|+.+++++|+++  +.+++..|.+|
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g   80 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMAN------GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIG   80 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTC
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCC
Confidence            4567789999999999999999999987      567899999999999999999999999999998  55555555444


Q ss_pred             CcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhc
Q 008557          195 YDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR  248 (561)
Q Consensus       195 ~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  248 (561)
                      .||||+|+..|+..+.++|.+.+.+.+..|..|+||||+|+..|+.+++++|++
T Consensus        81 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            444444444444444444444444444444444444444444444444444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=6.1e-25  Score=227.79  Aligned_cols=181  Identities=15%  Similarity=0.142  Sum_probs=150.0

Q ss_pred             CChHHHHHHH-cCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCC-CCCcCCCCCCcH
Q 008557          120 GDLQLHLAAR-AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDS  197 (561)
Q Consensus       120 G~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~-~~~~~~~~g~tp  197 (561)
                      +.+++++|.. .++.+.++.|++.+.             ++.||||+||..|+.++|++|++++... .....+..|.||
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~-------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tp  131 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGI-------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA  131 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTC-------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCC-------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCH
Confidence            4568888877 578889999887643             3459999999999999999999984311 112345678899


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCC---ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccc--cccCCchHHHHHH-Hh
Q 008557          198 FHVAAKQGHLVVKALVSKDPST---GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL--EDNKGNTALHIAI-KK  271 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~--~d~~G~TpLh~Aa-~~  271 (561)
                      ||+|+..|+.+++++|...+++   .+..+.+ +||||+|+..|+.++|++|++.|+++ +.  .|..|+||||+|+ ..
T Consensus       132 L~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~  209 (376)
T 2aja_A          132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGR  209 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHC
Confidence            9999999999999999988864   2222333 89999999999999999999999987 55  8889999999999 99


Q ss_pred             CCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 008557          272 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  323 (561)
Q Consensus       272 g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~  323 (561)
                      |+.++|++|++ .|+       .|.||||+|+..|+.+++++|+++|++.+.
T Consensus       210 G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          210 GHHNVINFLLD-CPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE  253 (376)
T ss_dssp             CCHHHHHHHTT-SHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHh-CCC-------ccchHHHHHHHCCCHHHHHHHHhcCccccc
Confidence            99999999999 664       288999999999999999999999987644

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1e-24  Score=213.02  Aligned_cols=142  Identities=23%  Similarity=0.308  Sum_probs=106.2

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC-CCCCcHHHHHH
Q 008557          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-KKGQTALHMAV  235 (561)
Q Consensus       157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-~~g~tpLh~A~  235 (561)
                      ..|.||||+|+..|+.++|++|++   +.+++..|..|+||||+|+..|+..+.++|...+.+++..| ..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            456677777777777777777776   34556666677777777777777766666666666666666 67888888888


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  315 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll  315 (561)
                      ..|+.+++++|++.|+++ +.+|..|+||||+|+..++                  +..+.||||+|+..|+.+++++|+
T Consensus       120 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence            888888888888888887 8888888888888875221                  245788888888888888888888


Q ss_pred             HcCCc
Q 008557          316 EAGAA  320 (561)
Q Consensus       316 ~~ga~  320 (561)
                      +++.+
T Consensus       181 ~~~~~  185 (244)
T 3ui2_A          181 GQVFE  185 (244)
T ss_dssp             HHHEE
T ss_pred             Hhccc
Confidence            87554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.8e-23  Score=184.86  Aligned_cols=127  Identities=25%  Similarity=0.325  Sum_probs=90.7

Q ss_pred             CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                      |.+|.||||+|+..|+..+.++|.+.+.+++..|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+.
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHH
Confidence            334444444444444444444444444445556777888888888888888888888888876 8888888888888888


Q ss_pred             hCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 008557          271 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  319 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga  319 (561)
                      .|+.+++++|++ .|++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        86 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            888888888888 788888888888888888888888888777766543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.1e-22  Score=189.35  Aligned_cols=138  Identities=24%  Similarity=0.335  Sum_probs=77.9

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccC-CCCCcHHHHHHh
Q 008557          158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTD-KKGQTALHMAVK  236 (561)
Q Consensus       158 ~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d-~~g~tpLh~A~~  236 (561)
                      .|.||||+|+..|+.+++++|++   +.+++..|.+|+||||+|+..|+..+.++|.+.+.+++..| ..|+||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            34444444444444444444444   22334444444444444444444444444444444444444 566677777777


Q ss_pred             CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      .|+.+++++|++.|+++ +.+|.+|+||||+|+..++.                  ..+.+||++|+..|+.+++++|.+
T Consensus       120 ~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            77777777777766665 66677777777777653321                  234567777777777777776654


Q ss_pred             c
Q 008557          317 A  317 (561)
Q Consensus       317 ~  317 (561)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=8.1e-23  Score=180.67  Aligned_cols=129  Identities=26%  Similarity=0.278  Sum_probs=80.5

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcC
Q 008557          111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (561)
Q Consensus       111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~  190 (561)
                      +|+ .+|..|+||||+|+..|+.+++++|++.+.      .++.+|..|.||||+|+..|+.+++++|+++  +.+++  
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~--   70 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGS------DPNVKDHAGWTPLHEACNHGHLKVVELLLQH--KALVN--   70 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT--
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCccc--
Confidence            344 456677777777777777777777776633      3566677777777777777777777777766  33433  


Q ss_pred             CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                                                     .+|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus        71 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           71 -------------------------------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             -------------------------------CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCC
T ss_pred             -------------------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhh
Confidence                                           44555666666666666666666666666555 6666666666666666


Q ss_pred             hCCHHHHHHHhh
Q 008557          271 KGRTQIVRCLLS  282 (561)
Q Consensus       271 ~g~~~iv~~LL~  282 (561)
                      .+..+++++|.+
T Consensus       119 ~~~~~~l~~l~~  130 (137)
T 3c5r_A          119 ESMKSLLLLPEK  130 (137)
T ss_dssp             HHHHHHHSCC--
T ss_pred             ccHHHHHhhccc
Confidence            666666555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=4.4e-22  Score=194.34  Aligned_cols=143  Identities=17%  Similarity=0.158  Sum_probs=127.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCC
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGY  195 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~  195 (561)
                      +..|+||||+||+.|+.++|+.|++ +.      +++.+|..|.||||+||..|+.++|++|+++  +.+++..+ ..|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~  112 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DR------DVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGL  112 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TC------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CC------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCC
Confidence            3568999999999999999999998 32      3788999999999999999999999999998  67777777 8899


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..|+..+.++|...+++++.+|..|+||||+|+..+                  .+..+.||||+|+..|+.+
T Consensus       113 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~  174 (244)
T 3ui2_A          113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEK  174 (244)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHH
Confidence            9999999999999999999999999999999999999999622                  1256889999999999999


Q ss_pred             HHHHHhhcCCCC
Q 008557          276 IVRCLLSIEGID  287 (561)
Q Consensus       276 iv~~LL~~~gad  287 (561)
                      ++++|++ .+.+
T Consensus       175 iv~~L~~-~~~~  185 (244)
T 3ui2_A          175 VINVLEG-QVFE  185 (244)
T ss_dssp             HHHHHHH-HHEE
T ss_pred             HHHHHHH-hccc
Confidence            9999998 4433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=2.5e-22  Score=186.98  Aligned_cols=139  Identities=17%  Similarity=0.156  Sum_probs=125.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCC-CCCC
Q 008557          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGY  195 (561)
Q Consensus       117 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~-~~g~  195 (561)
                      +..|+||||+|+..|+.++++.|++ +      .+++.+|..|.||||+|+..|+.+++++|+++  +.+++..+ .+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~  111 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGL  111 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCC
Confidence            4578899999999999999999998 3      23788999999999999999999999999998  67777777 8899


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..|+..+.++|.+.+++++.+|..|+||||+|+..++.                  ..+.+||++|+..|+.+
T Consensus       112 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~  173 (183)
T 3deo_A          112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEK  173 (183)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHH
T ss_pred             CHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHH
Confidence            999999999999999999999999999999999999999974322                  35679999999999999


Q ss_pred             HHHHHhh
Q 008557          276 IVRCLLS  282 (561)
Q Consensus       276 iv~~LL~  282 (561)
                      ++++|.+
T Consensus       174 i~~~L~~  180 (183)
T 3deo_A          174 VINVLEG  180 (183)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999987

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=1.9e-22  Score=193.65  Aligned_cols=138  Identities=27%  Similarity=0.344  Sum_probs=96.8

Q ss_pred             hccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHH
Q 008557          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTAL  231 (561)
Q Consensus       152 ~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpL  231 (561)
                      ++..+..|.||||+||..|+.++|++|++.  +.+++                                 .+|..|+|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~---------------------------------~~~~~g~t~L  110 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGVN---------------------------------GLDKAGSTAL  110 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCTT---------------------------------CCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhC--CCCcc---------------------------------ccCCCCCCHH
Confidence            344566788899999999998888888886  33333                                 3456677777


Q ss_pred             HHHHhCCCHHHHHHHhcC-CCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHH
Q 008557          232 HMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  310 (561)
Q Consensus       232 h~A~~~g~~~iv~~Ll~~-~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i  310 (561)
                      |+|+..|+.+++++|++. +.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++
T Consensus       111 ~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~  188 (222)
T 3ehr_A          111 YWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASL  188 (222)
T ss_dssp             HHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHH
Confidence            777777888888888887 5555 7788888888888888888888888888 688888888888888888888888888


Q ss_pred             HHHHHHcCCcccccCC
Q 008557          311 FSLLKEAGAAHSKDHG  326 (561)
Q Consensus       311 ~~~Ll~~ga~~~~~~~  326 (561)
                      ++.|++.|+.....+.
T Consensus       189 l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          189 LKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HC--------------
T ss_pred             HHHHhccchhhhccch
Confidence            8888888887655443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=4e-22  Score=191.30  Aligned_cols=112  Identities=27%  Similarity=0.277  Sum_probs=105.1

Q ss_pred             cCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       223 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      .|..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++..|+++|.+|..|+||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            3677999999999999999999999999887 899999999999999999999999999944999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          303 EKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       303 ~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      +..|+.+++++|+++|++++..+..+.+|....
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  180 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA  180 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHh
Confidence            999999999999999999999999999887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.7e-21  Score=193.98  Aligned_cols=194  Identities=22%  Similarity=0.227  Sum_probs=143.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCC
Q 008557          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (561)
Q Consensus       116 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~  195 (561)
                      .|..+.++|+.+...|+..+.+.+....+...    ....+ .+....    .....-..+++.... ............
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~----~~kP~-~~s~~~----~~~~fI~aKYl~~~f-~~~~~~~~~~~l  131 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSED----PVKPN-PGSDMI----ARKDYITAKYMERRY-ARKKHADTAAKL  131 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSS----CCSCC-TTCCHH----HHHHHHHHHHTTCTT-SCCCSSSHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhh----cCCCC-CCCCHH----HHHHHHHHHHHHhhc-ccccccccchhh
Confidence            46778899999999999877766554322110    00111 111111    112222223433331 112222223345


Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCC------ccccCCCCCcHHHHHHhC---CCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPST------GFRTDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTALH  266 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~------~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh  266 (561)
                      ++|+.|+..|+......+...+.+      .+..|..|+||||+|+..   |+.+++++|++.|+++ +.+|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence            789999999988766665555555      334488899999999998   8999999999999997 999999999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      +|+..|+.+++++|++ .|+|++.+|.+|.||||+|+..|+.+++++|+++|++.
T Consensus       211 ~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999 89999999999999999999999999999999999974

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=3.2e-21  Score=167.09  Aligned_cols=113  Identities=24%  Similarity=0.259  Sum_probs=82.9

Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..|+..+.+.|...+.+++.+|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+
T Consensus         9 ~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~~~~   87 (123)
T 3aaa_C            9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVS   87 (123)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHH
Confidence            3333333333333333333333444456777888888888888999999999888886 888889999999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHH
Q 008557          276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL  313 (561)
Q Consensus       276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~  313 (561)
                      ++++|++ .|++++.+|..|.||||+|.   ..++.++
T Consensus        88 ~v~~Ll~-~ga~~~~~~~~g~t~l~~A~---~~~~~~l  121 (123)
T 3aaa_C           88 CVKLLLS-KGADKTVKGPDGLTAFEATD---NQAIKAL  121 (123)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHCC---CHHHHHH
T ss_pred             HHHHHHH-cCCCCCCcCCCCCCHHHHhC---CHHHHHH
Confidence            9999998 78999999999999999884   4444443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1e-21  Score=197.83  Aligned_cols=144  Identities=21%  Similarity=0.140  Sum_probs=116.0

Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCc------CCCCCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCC
Q 008557          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASI------PARNGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDK  225 (561)
Q Consensus       155 ~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~------~~~~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~  225 (561)
                      ....+.++||.|+..|+.+.|+.|+..  +.+++.      .+..|.||||+|+..   |+..+.++|...+++++.+|.
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~  224 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA  224 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC
Confidence            345567889999999999999998888  445554      578889999999986   778888888888888888899


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      +|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++      .|.||||+|+..
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-----
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhc
Confidence            9999999999999999999999999887 8999999999999999999999999998 6765      578999999988


Q ss_pred             CCH
Q 008557          306 GNT  308 (561)
Q Consensus       306 ~~~  308 (561)
                      |+.
T Consensus       297 g~~  299 (301)
T 2b0o_E          297 VIS  299 (301)
T ss_dssp             ---
T ss_pred             CCc
Confidence            764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=196.92  Aligned_cols=129  Identities=25%  Similarity=0.234  Sum_probs=117.0

Q ss_pred             CCCCCcHHHHHHHcCHHHHHHHHhcCCCCccc------cCCCCCcHHHHHHhC---CCHHHHHHHhcCCCCcccccccCC
Q 008557          191 ARNGYDSFHVAAKQGHLVVKALVSKDPSTGFR------TDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKG  261 (561)
Q Consensus       191 ~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~n~~d~~G  261 (561)
                      ...+.++||.|+..|+......|...+.+++.      .|..|+||||+|+..   |+.+++++|++.|+++ +.+|.+|
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G  226 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG  226 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence            44456899999999999777766677777666      688999999999997   8999999999999987 9999999


Q ss_pred             chHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       262 ~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      +||||+|+..|+.+++++||+ .|++++.+|.+|.||||+|+..++.+++++|+++|++.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999999999999999999 89999999999999999999999999999999999873

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=2e-21  Score=168.38  Aligned_cols=111  Identities=19%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHh
Q 008557          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVK  236 (561)
Q Consensus       157 ~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~  236 (561)
                      ..|.||||+|+..|+.+++++|++.  +.+++..|..|.||||+|+..|+..+.++|.+.+.+++.+|..|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            3445555555555555555555554  34445555555555555555555555555555555566667777777777777


Q ss_pred             CCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                      .|+.+++++|++.++++ +.+|.+|+||||+|+.
T Consensus        83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence            77788888888777776 7777778888887743

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.5e-20  Score=154.55  Aligned_cols=93  Identities=38%  Similarity=0.641  Sum_probs=88.0

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHc
Q 008557          226 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  305 (561)
Q Consensus       226 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~  305 (561)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence            4899999999999999999999999987 9999999999999999999999999999 8999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCc
Q 008557          306 GNTELFSLLKEAGAA  320 (561)
Q Consensus       306 ~~~~i~~~Ll~~ga~  320 (561)
                      |+.+++++|+++||+
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=6e-20  Score=189.58  Aligned_cols=125  Identities=21%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             CCcHHHHHHHc-CHHHHHHHHhcCCCCccccC--CCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHH
Q 008557          194 GYDSFHVAAKQ-GHLVVKALVSKDPSTGFRTD--KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  270 (561)
Q Consensus       194 g~tpLh~Aa~~-g~~~v~~lL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~  270 (561)
                      +.||||.|+.. |+..+.+.|...+.+++..|  ..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            33444444444 44444444444444444444  55666666666666666666666666655 5666666666666666


Q ss_pred             hCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 008557          271 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  320 (561)
Q Consensus       271 ~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~  320 (561)
                      .|+.+++++||+ .|++++.+|.+|.||||+|+..++.+++++|+.++..
T Consensus       278 ~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          278 LGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             cCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            666666666666 5666666666666666666666666666666665543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.1e-19  Score=187.60  Aligned_cols=159  Identities=14%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             CCcHHHHHHHh-CcHHHHHHHHhcCCCCCCCcCC--CCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          159 GETPLYVAAES-GHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       159 g~TpLh~Aa~~-g~~~iv~~LL~~~~~~~~~~~~--~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      +.||||.|+.. |+.+++++|+++  +.+++..+  .+|.||||+|+..|+..+.++|...+++++..|..|+||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            33444444444 444444444443  23333333  34444444444444444444444444445555666666666666


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc--CCCCcccccCCCCCHHHHHHHcCC--HHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI--EGIDVNSLNKAGESPLDVAEKLGN--TELF  311 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~--~gad~n~~d~~G~TpL~~A~~~~~--~~i~  311 (561)
                      ..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+++++|+..  .+.+....+..+.|+++++.....  .+-.
T Consensus       277 ~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~  355 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDP  355 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------------
T ss_pred             HcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCH
Confidence            666666666666666665 66666666666666666666666666652  122333444556666666655432  2233


Q ss_pred             HHHHHcCCc
Q 008557          312 SLLKEAGAA  320 (561)
Q Consensus       312 ~~Ll~~ga~  320 (561)
                      +.|.+.+.+
T Consensus       356 ekl~r~~~~  364 (368)
T 3jue_A          356 EKLSRRSHD  364 (368)
T ss_dssp             ---------
T ss_pred             HHHHhcCCC
Confidence            444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.2e-19  Score=155.13  Aligned_cols=109  Identities=34%  Similarity=0.502  Sum_probs=89.2

Q ss_pred             ccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHH
Q 008557          222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV  301 (561)
Q Consensus       222 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~  301 (561)
                      .+|.+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHH
Confidence            35778888888888888888888888888776 7888888888888888888888888888 688888888888888888


Q ss_pred             HHHcCCHHHHHHHHHcCCcccccCCCCCCHH
Q 008557          302 AEKLGNTELFSLLKEAGAAHSKDHGKPPSAT  332 (561)
Q Consensus       302 A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~  332 (561)
                      |+..++.+++++|+++|++++..+..+.+|.
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            8888888888888888888877766665543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=8.3e-19  Score=174.52  Aligned_cols=125  Identities=18%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCC----CCcCCCCCCcHHHHHHHc---CHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLET----ASIPARNGYDSFHVAAKQ---GHLVVKALVSKDPSTGFRTDKKGQTALHM  233 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~----~~~~~~~g~tpLh~Aa~~---g~~~v~~lL~~~~~~~~~~d~~g~tpLh~  233 (561)
                      ++|+.|+..|+.+.++.++..+....    .+..+..|.||||+|+..   |+..+.++|...+++++.+|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            44444444444444444444432211    222344444444444444   44444444444444555556666666666


Q ss_pred             HHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC
Q 008557          234 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  287 (561)
Q Consensus       234 A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad  287 (561)
                      |+..|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus       212 A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~  263 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQ-ALSG  263 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTT
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            66666666666666666665 6666666666666666666666666666 4443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.6e-19  Score=152.89  Aligned_cols=108  Identities=30%  Similarity=0.389  Sum_probs=81.3

Q ss_pred             CCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHH
Q 008557          190 PARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  269 (561)
Q Consensus       190 ~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa  269 (561)
                      +|.+|.||||+|+..|+..+.++|...+.+++..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            3444444444444444444444444444555566778889999999999999999999998887 888999999999999


Q ss_pred             HhCCHHHHHHHhhcCCCCcccccCCCCCHH
Q 008557          270 KKGRTQIVRCLLSIEGIDVNSLNKAGESPL  299 (561)
Q Consensus       270 ~~g~~~iv~~LL~~~gad~n~~d~~G~TpL  299 (561)
                      ..|+.+++++|++ .|+++|.++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            9999999999998 7999999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=7.7e-19  Score=144.14  Aligned_cols=90  Identities=32%  Similarity=0.535  Sum_probs=56.0

Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      ||||+|+..|+.++.++|.+.+.+++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+
T Consensus         4 t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~   82 (93)
T 1n0q_A            4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE   82 (93)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHH
Confidence            3333333333333333333333444455666777777777777777777777777766 777777777777777777777


Q ss_pred             HHHHHhhcCCCC
Q 008557          276 IVRCLLSIEGID  287 (561)
Q Consensus       276 iv~~LL~~~gad  287 (561)
                      ++++|++ .|++
T Consensus        83 ~~~~Ll~-~ga~   93 (93)
T 1n0q_A           83 VVKLLLE-AGAY   93 (93)
T ss_dssp             HHHHHHH-TTCC
T ss_pred             HHHHHHH-cCCC
Confidence            7777776 5653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2e-17  Score=140.28  Aligned_cols=94  Identities=29%  Similarity=0.453  Sum_probs=84.6

Q ss_pred             CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCH
Q 008557          219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP  298 (561)
Q Consensus       219 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~Tp  298 (561)
                      .....|.+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcH
Confidence            34456889999999999999999999999999887 8899999999999999999999999999 799999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 008557          299 LDVAEKLGNTELFSLL  314 (561)
Q Consensus       299 L~~A~~~~~~~i~~~L  314 (561)
                      ||+|+..++.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=7.8e-16  Score=130.41  Aligned_cols=95  Identities=25%  Similarity=0.327  Sum_probs=61.3

Q ss_pred             HhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCc
Q 008557          150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQT  229 (561)
Q Consensus       150 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~t  229 (561)
                      ......|.+|.||||+|+..|+.+++++|+++  +.++                                 +.+|..|+|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i---------------------------------~~~d~~g~t   59 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMAN--GADV---------------------------------AAKDKNGST   59 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHT--TCCT---------------------------------TCCCTTCCC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHc--CCCC---------------------------------CccCCCCCC
Confidence            34556677777777777777777777777776  3333                                 344556667


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHH
Q 008557          230 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  280 (561)
Q Consensus       230 pLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~L  280 (561)
                      |||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus        60 pLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           60 PLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHHHHcCCHHHHHHh
Confidence            777777777777777777776665 66777777777777777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	561
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-21
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-18
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-11
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-24
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 46/270 (17%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           ER  + ++ GK G   LH+A    NL  ++++L     +            G TPL++AA
Sbjct: 153 ERDAHPNAAGKNGLTPLHVAVHHNNLD-IVKLLLPRGGS-----PHSPAWNGYTPLHIAA 206

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG 227
           +     +   +LQ+     A   +  G    H+AA++GH  + AL+    + G   +K G
Sbjct: 207 KQNQVEVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 264

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSV--------------------------------LK 255
            T LH+  +  +  +   LI+    V                                + 
Sbjct: 265 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 256 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
            +   G + LH A ++G T IV  LL   G   N ++  G +PL +A++LG   +  +LK
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

Query: 316 EAGAAHSKDHGKPPSATKQLKQTVSDIKHD 345
                   D       + + + +  +   +
Sbjct: 384 VV-----TDETSFVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-23
 Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 16/199 (8%)

Query: 124 LHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH+A+  G+L  V  +LQ     N         N + ETPL++AA +GH  + + +LQ+ 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNV-------SNVKVETPLHMAARAGHTEVAKYLLQN- 55

Query: 183 NLETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 240
               A + A+        H AA+ GH  +  L+ ++ +        G T LH+A +  + 
Sbjct: 56  ---KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 300
           + VL L+  + S       KG T LH+A K G+ ++   LL       N+  K G +PL 
Sbjct: 113 ETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLH 170

Query: 301 VAEKLGNTELFSLLKEAGA 319
           VA    N ++  LL   G 
Sbjct: 171 VAVHHNNLDIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-20
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 10/207 (4%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           +R  + +    + +  LH+AARAG+   V + L    A      ++ K ++ +TPL+ AA
Sbjct: 21  QRGASPNVSNVKVETPLHMAARAGHTE-VAKYLLQNKAK-----VNAKAKDDQTPLHCAA 74

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKG 227
             GH  +V+ +L++      ++    G+   H+AA++GH+     + +  ++     KKG
Sbjct: 75  RIGHTNMVKLLLENNA--NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 132

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 287
            T LH+A K     +   L+  D          G T LH+A+      IV+ LL   G  
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGS 190

Query: 288 VNSLNKAGESPLDVAEKLGNTELFSLL 314
            +S    G +PL +A K    E+   L
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 5e-18
 Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 33/240 (13%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQS------------------------- 142
           + K   ++  K     LH AAR G+ + V  +L++                         
Sbjct: 54  QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

Query: 143 --CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV 200
                 E +   +   ++G TPL+VAA+ G   + E +L+       +   +NG    HV
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHV 171

Query: 201 AAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 259
           A    +L +VK L+ +  S        G T LH+A K    ++   L++   S    E  
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV 229

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           +G T LH+A ++G  ++V   L  +  + N  NK+G +PL +  + G+  +  +L + G 
Sbjct: 230 QGVTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 1e-15
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 288
           T LH+A    +  IV  L++   S   + + K  T LH+A + G T++ + LL      V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV 59

Query: 289 NSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           N+  K  ++PL  A ++G+T +  LL E  A
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 2e-22
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 41/242 (16%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQS---------------------------CDANEAKD 150
           + G   LH A +      V  +L+                                    
Sbjct: 37  EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHM--------NLETASIPARNGYDSFHVAA 202
            +++ +  G T    AA  G    ++ + +            E      + G  +   AA
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 203 KQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLE 257
           ++GH+ V+K L+ +  +     D  G+ AL  A+   +    E I   L+     V  + 
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVR 215

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 317
             +G T L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 318 GA 319
           GA
Sbjct: 276 GA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 2e-19
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 22/210 (10%)

Query: 124 LHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           L  A +  ++  V ++L+   + N       ++ + G TPL+ A +     IVE +L+H 
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVN------FQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 183 NLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 242
                 +  +NG   F +AA  G + +  L     +     D  G TA   A        
Sbjct: 63  A--DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 243 VLELIRPDPS---------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 293
           +  L +   +           +     G TAL  A +KG  ++++ LL   G DVN+ + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 294 AGESPLDV----AEKLGNTELFSLLKEAGA 319
            G + L      ++      +  LL + GA
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 4e-15
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 37/179 (20%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG 170
           ++++   K G   L  AA  G++  +  +L    A+     ++  +  G   L  A  S 
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-----VNACDNMGRNALIHALLSS 193

Query: 171 HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTA 230
               VE +   +    A +  R                                ++G+T 
Sbjct: 194 DDSDVEAITHLLLDHGADVNVR-------------------------------GERGKTP 222

Query: 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 289
           L +AV+ ++  +V  L+  +   +   D+ G TAL +A++    +I   L    G   +
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 37/172 (21%), Positives = 57/172 (33%), Gaps = 43/172 (25%)

Query: 191 ARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 249
           A         A +   + +V+ L+    +  F+ ++ G T LH AV+   EDIV  L+R 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 250 DPS--------------------------------VLKLEDNKGNTALHIAIKKGRTQIV 277
                                               +   D  G TA   A   G+ + +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 278 RCLLS---------IEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKEAGA 319
           + L               D   L K G + L  A + G+ E+   LL E GA
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           +   + +  G+RG   L LA    +L  V  +L+          ++  + +G+T L +A 
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----INDTDSDGKTALLLAV 261

Query: 168 ESGHALIVEEMLQH 181
           E     I E + + 
Sbjct: 262 ELKLKKIAELLCKR 275

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 6e-21
 Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 41/228 (17%)

Query: 121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
           +L +   A +G L  + E + +      K L ++ +Q+  T L+ A  +GH  IVE +LQ
Sbjct: 4   NLMVCNLAYSGKLEELKESILA-----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 58

Query: 181 HMNLET-----------------------------ASIPARN--GYDSFHVAAKQGHL-V 208
                                              A + A N  G    H AA +    +
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 118

Query: 209 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
              L+    +   + D    TA+H A    N  ++  L+    S   ++D +GNT LH+A
Sbjct: 119 AVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLA 176

Query: 269 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
             + R +  + L+S +G  +   NK  ++PL VA+  G   +   + E
Sbjct: 177 CDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 3e-10
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 198 FHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 256
               A  G L  +K  +  D S   RTD+  +TALH A        ++E +      +  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVND 65

Query: 257 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
           +D+ G + LHIA   GR +IV+ LL  +G  VN++N+ G +PL  A      E+  +L E
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 317 AGA-AHSKDH 325
            GA   +KDH
Sbjct: 125 GGANPDAKDH 134

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-08
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
           ++  + G   LH AA       +  +L    AN        K+    T ++ AA  G+  
Sbjct: 97  NAVNQNGCTPLHYAASKNRHE-IAVMLLEGGAN-----PDAKDHYEATAMHRAAAKGNLK 150

Query: 174 IVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFRTDKKGQTALH 232
           ++  +L +            G    H+A  +  +   K LVS+  S     +K+ +T L 
Sbjct: 151 MIHILLYYKASTNI--QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQ 207

Query: 233 MAVKGQNEDIVLELI 247
           +A  G    I+  ++
Sbjct: 208 VAKGG-LGLILKRMV 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (220), Expect = 8e-21
 Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 44/232 (18%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           LH A       +V E+L S  +      L +K+Q+G  PL+ +       I   +L    
Sbjct: 4   LHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 182 ----------------------------------MNLETASIPARNGYDSFHVAAKQGHL 207
                                                   +     G    H+A  +   
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 208 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 267
            V   + ++ ++    DK  Q  LH A    +  ++  L     S +  +D +G T L  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 268 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 319
           A+ +G       L+   G + + ++  G    DVA    N ++         
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 321
           N  LH A  +     V+ LL  +   +   ++ G  PL  +      E+ S L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 322 SKDH 325
           + D 
Sbjct: 61  NLDD 64

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 229 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 279
             LH A        V EL+   PS+L  +D  G   LH ++     +I   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 52

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL 207
            PL+ A        V+E+L     + + +  ++  G    H +      
Sbjct: 2   YPLHQACMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 1e-18
 Identities = 50/254 (19%), Positives = 81/254 (31%), Gaps = 53/254 (20%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           + GD  LHLA    +    ++ L    A    + L  +N  G+T L++AA  G A  VE+
Sbjct: 7   EDGDTALHLAVIHQHE-PFLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 178 MLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPSTGFR------------TD 224
           +          +  R G+ + H+A +         L+   PS                T 
Sbjct: 64  LYAAGA--GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 225 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG----------------------- 261
                   +  +   E+            L+ E+  G                       
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 262 -----------NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310
                       T LH+A++     ++  LL   G D  +    G +PL  A    N  L
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 311 FSLLKEAGAAHSKD 324
             LL+  GA   +D
Sbjct: 241 ARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 3e-11
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 13/158 (8%)

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHM-NLETASIPARNGYDSFHVAAKQGHLVV 209
           +     ++G+T L++A    H   ++ +L      E   +    G  + H+AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 210 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK--------- 260
              +    +     ++ G TALH+A + +       L++P PS  +   +          
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 261 ---GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 295
               +    +  +               + + + N  G
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 8e-08
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 258 DNKGNTALHIAIKKGRTQIVRCLLSIE--GIDVNSLNKAGESPLDVAEKLGN 307
              G+TALH+A+       +  LL        ++  N  G++ L +A  LG 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE 57

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (205), Expect = 3e-18
 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 24/202 (11%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           + G+  LH      NL  +++ L    +N         +  GE+ L  A +S +      
Sbjct: 105 EHGNTPLHWLTSIANL-ELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 178 MLQHMNLETASIPARNGYDS--FHVAAKQGH-------------LVVKALVSKDPSTGFR 222
               ++     +   +  +    H                    +++  +V K       
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 218

Query: 223 TDKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
              + ++  +     + + I+  L+L     ++L  +D+ G+T L+IA + G   IV  L
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 281 LSIEGIDVNSLNKAGESPLDVA 302
           L   G D    NK+G  P+D  
Sbjct: 279 LD-YGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 30/245 (12%)

Query: 107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA 166
                N++S G   + Q    +    L  V +   +       +L    ++ G TPL+  
Sbjct: 59  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL----NLNIPVDEHGNTPLHWL 114

Query: 167 AESGHALIVEEMLQHMNLETASIPARNGY-DSFHVAAKQGHL-----VVKALVSKDPSTG 220
               +  +V+ +++H     ++    +   +S  V A +          +AL+       
Sbjct: 115 TSIANLELVKHLVKHG----SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 170

Query: 221 FRTDKKGQTALHMAV------------KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 268
              D   +T LH  +            K   + ++  +++     ++   N+  +  +  
Sbjct: 171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 230

Query: 269 IKKGRTQIVRCLLSIEGI--DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 325
             + +  I+  L     I   +N+ +  G++ L++A +LGN  +   L + GA     + 
Sbjct: 231 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 290

Query: 326 -GKPP 329
            G  P
Sbjct: 291 SGLRP 295

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 8e-10
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED 258
            +   +   +  +L +   +         Q   H++     +++         ++    D
Sbjct: 45  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 104

Query: 259 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 302
             GNT LH        ++V+ L+   G +    +  GES L  A
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 4/160 (2%)

Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKAL 212
           +++  + E  L          +   +    +   +   + N              V  A 
Sbjct: 33  NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 92

Query: 213 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK- 271
            +   +     D+ G T LH      N ++V  L++   + L   DN G + L  A+K  
Sbjct: 93  PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSV 151

Query: 272 --GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 309
               +     LL      +   +    + L          
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 191

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (196), Expect = 9e-18
 Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 7/208 (3%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           GD  LHLA      +  ME+++    + A   L+ +N   +TPL++A  +    I E +L
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAEALL 59

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVV----KALVSKDPSTGFRTDKKGQTALHMAV 235
                        N              V             S    T+  G T LH+A 
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 119

Query: 236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 295
                 IV  L+     V   E   G TALH+A+      +V  LL   G DVN +   G
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQG 178

Query: 296 ESPLDVAEKLGNTELFSLLKEAGAAHSK 323
            SP  +     +T +   L +    + +
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQLTLENLQ 206

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLA    N   V  +L+ C A+      ++   +G +P  +        I +++ Q   
Sbjct: 149 LHLAVDLQNPDLVSLLLK-CGADV-----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

Query: 184 LETASIPARNGYDSF 198
                +P     +S+
Sbjct: 203 ENLQMLPESEDEESY 217

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 193 NGYDSFHVAAKQGHL-VVKALVSKDPSTGF---RTDKKGQTALHMA 234
           +G    H+A       +   ++ +           +   QT LH+A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 79.4 bits (194), Expect = 5e-17
 Identities = 40/251 (15%), Positives = 81/251 (32%), Gaps = 56/251 (22%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK------KNQEGETPLYVAA---- 167
           +     LH  A   +  +  +++     +EAK+ ++        + +  TPL +A     
Sbjct: 31  RHNRTVLHWIASNSSAEKSEDLIV----HEAKECIAAGADVNAMDCDENTPLMLAVLARR 86

Query: 168 -----------------------------ESGHALIVEEMLQH------------MNLET 186
                                         +    ++  ML                +  
Sbjct: 87  RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 146

Query: 187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 246
             I A N       +AK        +     +       KG+TALH A +  N  IV  L
Sbjct: 147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 206

Query: 247 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 306
           +    S    +D  G T + +A ++GR ++V  L+  +G  V +++    +   +A+   
Sbjct: 207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANN 265

Query: 307 NTELFSLLKEA 317
           +  +  +    
Sbjct: 266 HHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE--- 284
           ++ + +  +      + E I  + SV  ++     T LH        +    L+  E   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRE-SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 285 ----GIDVNSLNKAGESPL 299
               G DVN+++    +PL
Sbjct: 60  CIAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           + L   A     + E +     N          +   T L+  A +  A   E+++ H 
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNI------IDPRHNRTVLHWIASNSSAEKSEDLIVHE 56

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 9e-07
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
            KDS   +G   LH AA+  N+  V  ++    +N+      K++++G+TP+ +AA+ G 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-----DKQDEDGKTPIMLAAQEGR 233

Query: 172 ALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHL-VVKAL 212
             +V  ++Q      AS+ A +   + +  +A    H  +V   
Sbjct: 234 IEVVMYLIQQG----ASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL--- 254
            H  A   + + + +  +  +      +  +T LH      + +   +LI  +       
Sbjct: 6   LHTEAAGSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 255 ----KLEDNKGNTALHIAIKKGRTQIVRC 279
                  D   NT L +A+   R ++V  
Sbjct: 64  GADVNAMDCDENTPLMLAVLARRRRLVAY 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPS 218
           E+P+ +  E+  +  + E +   ++       R+     H  A        + L+  +  
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 219 TG-------FRTDKKGQTALHMAVKGQNED 241
                       D    T L +AV  +   
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.5 bits (187), Expect = 9e-16
 Identities = 33/227 (14%), Positives = 74/227 (32%), Gaps = 22/227 (9%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRV--MEILQSCDANEAKDLLSKKNQEGETPLYV 165
           +   +    G + ++   +AA  G  S +  + +L + D       +     E      +
Sbjct: 78  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-----VKVIQAENYQAFRL 132

Query: 166 AAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-VVKALVSK--DPSTGFR 222
           AAE+GH  ++  + +    E  ++     Y +F +AA+ GHL V+  L       +T   
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 223 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
             +        AV   + +++  L+     +          A     + G   +   +  
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHEFEYGEKYVNPFIAR 244

Query: 283 IEGIDVN----SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 325
                            +   D+  K    + F +L+     + +  
Sbjct: 245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 291

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 75.3 bits (184), Expect = 2e-15
 Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 38/234 (16%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
              +              LAA  G+L  +  + +                E      +AA
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM----IQAENYHAFRLAA 169

Query: 168 ESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHL-VVKALVSKDPS------- 218
           E+GH  ++  + +      TA I A N Y     A  +GH  V+  L+            
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 229

Query: 219 --------------TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 264
                               K+   A  ++      D+V +          L+       
Sbjct: 230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC-------LQGFYMLRN 282

Query: 265 LHIAIKKGRTQIVRCLLSIEGI----DVNSLNKAGESPLDVAEKLGNTELFSLL 314
           L     +     +R LLSI GI       ++       L +A +LGN    +LL
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 16/143 (11%)

Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVV 209
           + L               E G   +   + +H+N           +D+F ++   G    
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK------EMHDAFKLSNPDGVF-- 265

Query: 210 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN----KGNTAL 265
             LV+K               L         D +  L+                  N  L
Sbjct: 266 -DLVTKSECL---QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 321

Query: 266 HIAIKKGRTQIVRCLLSIEGIDV 288
            +A++ G       LLSI  +  
Sbjct: 322 RLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 1/72 (1%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES 169
            K++   G      L        L   +  L S    +A    +    +    L +A   
Sbjct: 269 TKSECLQGFYMLRNLIRRNDEVLLD-DIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 170 GHALIVEEMLQH 181
           G+      +L  
Sbjct: 328 GNQGACALLLSI 339

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (170), Expect = 3e-14
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 44/229 (19%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           GD  LH+A   GNL  V  ++        +  L   N   +TPL++A  +         L
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTL--PSVVRL 58

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHL-------------------------------- 207
                 +     R+G  + H+A +                                    
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 208 ------VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG 261
                  V+ L+ +         K G++ L  AV+  +  +V +L+    + +  +   G
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMYSG 177

Query: 262 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 310
           ++ALH A  +G   +VR L+   G D +  N   ++PL VA      ++
Sbjct: 178 SSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 9e-09
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 171 HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTA 230
                 ++L     +  ++  ++G      A +   L +  L+ +  +        G +A
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 231 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
           LH A       +V  L+R       L++   +T L +A  +    I+R
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 42/213 (19%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQ----------- 204
           +G+TPL++A   G+   V  ++         +   N       H+A              
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 205 --------------------------GHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
                                         +    +         +  G TALH+AV  +
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
            ++ V  L+     +  ++   G + L  A++     +V+ LL   G +VN+   +G S 
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSA 180

Query: 299 LDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 329
           L  A   G   L   L  +GA +  K+ H   P
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 213

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIV 175
           G   LH A+  G L  ++  L    A+      S KN   +TPL VA       I+
Sbjct: 177 GSSALHSASGRGLL-PLVRTLVRSGAD-----SSLKNCHNDTPLMVARSRRVIDIL 226

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.7 bits (169), Expect = 8e-14
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 222 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
           R  K G TALH+A      +++  LI+    V  ++D  G T LH A   G+ +  R L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 321
                D+ ++NK G++  DVA++     L  L K+    H
Sbjct: 253 E-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 9e-11
 Identities = 46/248 (18%), Positives = 80/248 (32%), Gaps = 46/248 (18%)

Query: 108 ERKKNKDSPGKR---------GDLQLHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQ 157
             + + + P  +                A  +G+   V+ +L+   D N         N 
Sbjct: 19  GSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-------YANV 71

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDP 217
           +G T L+ A    +  +        N    + P   G+   H AA  G+L +   +    
Sbjct: 72  DGLTALHQACIDDNVDM--VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 218 STGFRTDKKGQTALHMAVKGQNED--------------------------IVLELIRPDP 251
           +     + +G T L +A +   E+                             + +    
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189

Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 311
                    G TALH+A  KG T++++  L     DVN  +  G +PL  A   G  E  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKL-LIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 312 SLLKEAGA 319
            +L E   
Sbjct: 249 RILVENLC 256

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 192 RNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 251
           ++G  + HVAA +G+  V  L+ +        D  G T LH A     E+    L+    
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

Query: 252 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 284
            + +  +  G TA  +A +     I+  L  ++
Sbjct: 257 DM-EAVNKVGQTAFDVADED----ILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +     G   LH AA  G       IL     +     +   N+ G+T   VA E   
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEE-ACRILVENLCD-----MEAVNKVGQTAFDVADEDIL 277

Query: 172 ALIVEEMLQHMNL 184
             + EE+ +  NL
Sbjct: 278 GYL-EELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 14/100 (14%)

Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
               K G   LH+AA  G    V+++L     +     ++ K+ +G TPL+ AA  G   
Sbjct: 193 VRHAKSGGTALHVAAAKGYTE-VLKLLIQARYD-----VNIKDYDGWTPLHAAAHWGKEE 246

Query: 174 IVEEMLQHMNLETASIPARN--GYDSFHVAAK--QGHLVV 209
               +++++      + A N  G  +F VA +   G+L  
Sbjct: 247 ACRILVENL----CDMEAVNKVGQTAFDVADEDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 10/174 (5%)

Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKK---NQEGETPLYVAAESGHALIVEEMLQHMN 183
            A+     ++   + S    E   +  KK     +       A  SG    V  +L+   
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-- 62

Query: 184 LETASIPARN--GYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
              A I   N  G  + H A    ++ +   + ++ +   + D +G   LH A      D
Sbjct: 63  --GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 295
           I   LI     V    +++G+T L IA ++   ++++  ++ +G+D+ +  K  
Sbjct: 121 IAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 38/213 (17%)

Query: 134 SRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
           ++V+  L +  A    +L +  ++ GET L++AA    A   + +L       +      
Sbjct: 2   AQVISDLLAQGA----ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 57

Query: 194 GYDSFHVAAKQGHLVVKALVSKDPSTGFR------------------------------- 222
                 VAA    +    L ++  +   R                               
Sbjct: 58  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 117

Query: 223 -TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 281
             D  G+TALH A    N + V  L+    +    +D+K  T L +A ++G  +  + LL
Sbjct: 118 AADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALL 176

Query: 282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 314
                +    +     P DVA +  + ++  LL
Sbjct: 177 D-NFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-11
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           R   +L  AA  G++  V  +L     +         N+ G+T L V      A+ +E +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMFGSTAIALELL 55

Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
            Q  +         +             L V      D +     D  G   +H+AV+  
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEG 112

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
           +  +V  L     S L   D +G T L +A+++G   +V  L  
Sbjct: 113 HTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPS 218
           G+  L  AA  G    V  +L     E     A N +    +          AL      
Sbjct: 3   GDR-LSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQVMMFGSTAIALELLKQG 58

Query: 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
                     T+             L+++    + + + D  G   +H+A+++G T +V 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 316
                   D++  +  G +PL++A + G  +L  +L+ 
Sbjct: 119 F--LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 9e-06
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
           + P   G L +HLA + G+ + V  +    D +       +++  G TPL +A + G   
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH-------RRDARGLTPLELALQRGAQD 147

Query: 174 IVEEMLQHM 182
           +V+ +  HM
Sbjct: 148 LVDILQGHM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 260 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 298
           +    L  A  +G  Q VR LL  E +  ++LN+ G++ 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 9/159 (5%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AA  G+L   +  L   + N     ++ +N  G T L                  + 
Sbjct: 5   LASAAARGDL-EQLTSLLQNNVN-----VNAQNGFGRTALQ---VMKLGNPEIARRLLLR 55

Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
                +  R G+   H AA+ G L     + +  +     D +G   LH+A K  +  +V
Sbjct: 56  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 115

Query: 244 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 282
             L++   S +   ++KG+TA  +A   GR ++V  + +
Sbjct: 116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 4/158 (2%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTG 220
             L  AA  G    +  +LQ+      ++ A+NG+    +   +      A         
Sbjct: 3   NELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 221 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
                +   A+            L+ +    + + +EDN+GN  LH+A K+G  ++V  L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 281 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 318
           +     +V   N  G++  D+A   G  E+ SL++  G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQH 181
            +N +G+T   +A   G   +V  M  +
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (133), Expect = 5e-10
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDP 217
           +    L  AA +G    V  ++ +     A         S    A Q        V    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG----APFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 218 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 277
                   K           +    ++E++    + +  +D    TALH A +    ++V
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 278 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 315
             LL   G DV++ +K  ++  D++   GN +L  +L+
Sbjct: 117 E-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 12/162 (7%)

Query: 121 DL--QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           DL  +L  AARAG     + IL +  A          +  G +PL++AA+ GH    E +
Sbjct: 1   DLGKKLLEAARAGQDD-EVRILMANGAPFTT------DWLGTSPLHLAAQYGHFSTTEVL 53

Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 238
           L+      A             +    +  +  ++ K  +     D    TALH A +  
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHAN--IVEVLLKHGADVNAKDMLKMTALHWATEHN 111

Query: 239 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 280
           ++++V EL+    + +  +     TA  I+I  G   +   L
Sbjct: 112 HQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.4 bits (127), Expect = 5e-09
 Identities = 20/148 (13%), Positives = 56/148 (37%), Gaps = 10/148 (6%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  A +  ++  +++          K  L+  ++  ET L++A  S     +  ++  + 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL-HIVDFLV 68

Query: 184 LETASIPARNGYDSFHVAAKQGH--LVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 241
             + ++  + G  S  +             L+ +  ++    ++ G+T L +A + ++E 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 242 IVLELIRPDPSVLKLEDNKGNTALHIAI 269
               L        +    + N+ +H+  
Sbjct: 129 CEELL-------TQALSGRFNSHVHVEY 149

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 7e-08
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 197 SFHVAAKQGHLV-VKALVSK-----DPSTGFRTDKKGQTALHMAVKGQNE---DIVLELI 247
           S   A K   +  +    +      +        +  +TALH+AV+  +     IV  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 248 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 307
           +   ++ K          +  +      +           +   N++GE+PLD+A++L +
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLL--LRGKASIEIANESGETPLDIAKRLKH 126

Query: 308 TELFSLLKEAGAAHSKDH 325
                LL +A +     H
Sbjct: 127 EHCEELLTQALSGRFNSH 144

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 9e-07
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTG 220
             L  ++  G   +V+ ++  ++    S+P   G  + H A   GH  +   + +     
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVD--DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 221 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA--LHIAIKKGRTQIVR 278
              D  G T LH A    N  +   L+    +V  +  +   TA      +++G TQ  +
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 279 CLLSIE 284
            L  ++
Sbjct: 121 FLYGVQ 126

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 3/124 (2%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPS 218
               L  AA  G    V  +L+      A            +        +  L   +P+
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
                               +  +VL        V    D  G   + +A + G   + R
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHRDVAR 119

Query: 279 CLLS 282
            L +
Sbjct: 120 YLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 8/124 (6%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AA  G +  V  +L++     A +   ++  +              L   E      
Sbjct: 7   LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 66

Query: 184 LETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 243
                       + F       H        +  +     D  G+  + +A +  + D+ 
Sbjct: 67  ATLTRPVHDAAREGFLDTLVVLH--------RAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 244 LELI 247
             L 
Sbjct: 119 RYLR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 7/123 (5%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPS 218
            +     A ++G    V++ +        ++        +     Q  ++          
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---LLLKG 58

Query: 219 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 278
                  K      ++   +     ++L+    +   ++   G TAL         Q ++
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIK 114

Query: 279 CLL 281
            LL
Sbjct: 115 ALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 12/129 (9%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
            D +   A + G+L  V + +   +         +K                 L+    +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 239
              +    +      Y+      K              +        G TAL       +
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLL--------SKGADKTVKGPDGLTALEAT----D 109

Query: 240 EDIVLELIR 248
              +  L++
Sbjct: 110 NQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	561
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-36  Score=295.85  Aligned_cols=202  Identities=25%  Similarity=0.290  Sum_probs=180.7

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCC
Q 008557          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (561)
Q Consensus       114 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~  193 (561)
                      +..+++|+||||+||+.|+.+++++||+.++..   ..++.+|..|.||||+||..|+.+++++|+++  +++++..|.+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~i~~~d~~   77 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERG   77 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTT
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCcCCCCCCccchHHhhcccccccccccc--cccccccccc
Confidence            356899999999999999999999999986542   44888999999999999999999999999998  7888999999


Q ss_pred             CCcHHHHHHHcCHHHHHHHHhcCC-----------------------------------------------CCccccCCC
Q 008557          194 GYDSFHVAAKQGHLVVKALVSKDP-----------------------------------------------STGFRTDKK  226 (561)
Q Consensus       194 g~tpLh~Aa~~g~~~v~~lL~~~~-----------------------------------------------~~~~~~d~~  226 (561)
                      |.||||+|+..|+..+.++|....                                               ...+.+|.+
T Consensus        78 g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~  157 (255)
T d1oy3d_          78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (255)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             cchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccccc
Confidence            999999999999886665554321                                               112346788


Q ss_pred             CCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcC
Q 008557          227 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  306 (561)
Q Consensus       227 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~  306 (561)
                      |+||||+|+..++.+++++|++.+.+..+..+..|.||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..+
T Consensus       158 g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~  236 (255)
T d1oy3d_         158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRP  236 (255)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             CcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCC
Confidence            99999999999999999999999998866778899999999999999999999999 89999999999999999999999


Q ss_pred             CHHHHHHHHHcCCcc
Q 008557          307 NTELFSLLKEAGAAH  321 (561)
Q Consensus       307 ~~~i~~~Ll~~ga~~  321 (561)
                      +.+++++|+++||+.
T Consensus       237 ~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         237 NPILARLLRAHGAPE  251 (255)
T ss_dssp             CHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHcCCCC
Confidence            999999999999974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-34  Score=271.20  Aligned_cols=218  Identities=26%  Similarity=0.330  Sum_probs=182.1

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK  155 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  155 (561)
                      ++.+..++.|..+..+.+       +.     ..+.+++.+|..|+||||+||..|+.+++++|+.....      ....
T Consensus         5 ~~~~~~a~~G~~~~v~~~-------l~-----~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~------~~~~   66 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKES-------IL-----ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP------VNDK   66 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHH-------HH-----HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------SCCC
T ss_pred             HHHHHHHHhCCHHHHHHH-------HH-----hCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc------cccc
Confidence            455566777776554432       22     34567778899999999999999999999999887542      5566


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      +..+.++++.|+..|+.+++++|+++  +.+++..|.+|.||||+|+..|+.++.++|.+.+.+++.+|..|.||||+|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~Ll~~--~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~  144 (223)
T d1uoha_          67 DDAGWSPLHIAASAGRDEIVKALLGK--GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA  144 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccchhHHHhcc--CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhh
Confidence            77888999999999999999999987  5677888899999999999999998888888888888888899999999999


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  315 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll  315 (561)
                      ..++.+++++|++.+.++ +.+|.+|+||||+|+..|+.++|++||+ .|+|++.+|.+|+||||+| ..|+.+++++|+
T Consensus       145 ~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         145 AKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             hcCCcchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            999999999999888886 8889999999999999999999999998 7999999999999999988 468888888887


Q ss_pred             H
Q 008557          316 E  316 (561)
Q Consensus       316 ~  316 (561)
                      +
T Consensus       222 ~  222 (223)
T d1uoha_         222 E  222 (223)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=260.34  Aligned_cols=207  Identities=23%  Similarity=0.286  Sum_probs=193.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       120 G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      ++++|+.+|..|+.+.|+.+|...+     .+++.+|..|+||||+||..|+.+++++|+..  .......+..+.++++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~-----~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~   75 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLH   75 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC-----CcCcCcCCCCCCHHHHHHHhhhhccccccccc--cccccccccccccccc
Confidence            4789999999999999999997754     56899999999999999999999999999998  5566667788999999


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHH
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  279 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~  279 (561)
                      .|+..|+.++.++|...+.+++..|.+|+||||+|+..|+.+++++|++.|.++ +.+|..|.||||+|+..++.+++++
T Consensus        76 ~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          76 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhh
Confidence            999999999999999988999999999999999999999999999999999887 8999999999999999999999999


Q ss_pred             HhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          280 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       280 LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      |+. .+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+..+.+|....
T Consensus       155 L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         155 LLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             HHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             hcc-ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            998 8999999999999999999999999999999999999999999999987543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-32  Score=259.05  Aligned_cols=227  Identities=17%  Similarity=0.173  Sum_probs=183.9

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK  155 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  155 (561)
                      ++++.|...|..+..+.       ++.     ..+.+++.+|.+|+||||+|+..|+.+++++||+++++.   ...+..
T Consensus         2 ~pLh~A~~~g~~~~v~~-------Ll~-----~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~   66 (229)
T d1ixva_           2 YPLHQACMENEFFKVQE-------LLH-----SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV---NLDDYP   66 (229)
T ss_dssp             CHHHHHHHHTCHHHHHH-------HHH-----HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTC---CGGGCC
T ss_pred             HhHHHHHHcCCHHHHHH-------HHH-----cCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccc---cccccc
Confidence            35566666666544433       222     234567788889999999999999999999999876532   224567


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      +..|.||+|+|+..+..++++.++..+........+..+.||++.++..++..+...|...+......|..|+||||+|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~  146 (229)
T d1ixva_          67 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA  146 (229)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh
Confidence            78888999999999999999888887555556667778889999999999888888888888888888888999999999


Q ss_pred             hCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 008557          236 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  315 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll  315 (561)
                      ..|+.+++++|++.++..++.+|.+|+||||+|+..|+.+++++|++..|+|++.+|.+|+||||+|+   +.+++++|+
T Consensus       147 ~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll  223 (229)
T d1ixva_         147 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL  223 (229)
T ss_dssp             HHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHH
Confidence            99999999999988877678889999999999999999999999987568999999999999999887   467889999


Q ss_pred             HcCCc
Q 008557          316 EAGAA  320 (561)
Q Consensus       316 ~~ga~  320 (561)
                      ++|+|
T Consensus       224 ~~g~d  228 (229)
T d1ixva_         224 NNVVD  228 (229)
T ss_dssp             HHCCC
T ss_pred             HcCCC
Confidence            98886

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=269.81  Aligned_cols=240  Identities=27%  Similarity=0.363  Sum_probs=182.9

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK  155 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~  155 (561)
                      |+++.|+..|..+..+.+.             +.|+++|..|..|+||||+||..|+.++|++||+++.      .++.+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll-------------~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga------di~~~   62 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLL-------------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA------KVNAK   62 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHH-------------HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC------CSSCC
T ss_pred             ChHHHHHHCcCHHHHHHHH-------------HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC------CCCCC
Confidence            5677788888766666543             4578899999999999999999999999999998854      36777


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcC-----------------------------------------------------
Q 008557          156 NQEGETPLYVAAESGHALIVEEMLQHM-----------------------------------------------------  182 (561)
Q Consensus       156 ~~~g~TpLh~Aa~~g~~~iv~~LL~~~-----------------------------------------------------  182 (561)
                      |.+|.||||+|+..|+.+++++|+...                                                     
T Consensus        63 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  142 (408)
T d1n11a_          63 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY  142 (408)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHc
Confidence            888888888888887777777665331                                                     


Q ss_pred             -----------CCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcc------------------------------
Q 008557          183 -----------NLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGF------------------------------  221 (561)
Q Consensus       183 -----------~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~------------------------------  221 (561)
                                 .+.+++..+.+|.+|||+|+..|+..+.++|...+.+++                              
T Consensus       143 ~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~  222 (408)
T d1n11a_         143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  222 (408)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccc
Confidence                       123344556677888888888887766666554443322                              


Q ss_pred             ------------------------------------ccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHH
Q 008557          222 ------------------------------------RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL  265 (561)
Q Consensus       222 ------------------------------------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpL  265 (561)
                                                          ..|..|.||||.|+..++.+++++|++.|.++ +..+..+.|||
T Consensus       223 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L  301 (408)
T d1n11a_         223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPL  301 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHH
T ss_pred             cccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccc
Confidence                                                23444555666666666677777777777665 66777777888


Q ss_pred             HHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          266 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       266 h~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      |.|+..++.++++++++ .|+++|.+|.+|.||||+|++.|+.+++++|+++||+++..++.+.+|.....
T Consensus       302 ~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~  371 (408)
T d1n11a_         302 HVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK  371 (408)
T ss_dssp             HHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             hhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            88888888888888887 78999999999999999999999999999999999999999999999886543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.8e-32  Score=258.43  Aligned_cols=198  Identities=27%  Similarity=0.310  Sum_probs=172.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF  198 (561)
Q Consensus       119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL  198 (561)
                      +|+||||+|+..|+.+++..|++.....  +..++.+|.+|+||||+||..|+.+++++|+++  +.+++..|.+|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~--~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~--g~d~~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC--CCCcccCCCCCCccccccccccccccccccccc--ccccccccccccccc
Confidence            5999999999999987777766543322  355899999999999999999999999999998  678899999999999


Q ss_pred             HHHHHcCHHHHHHHHhcCCCC------ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC
Q 008557          199 HVAAKQGHLVVKALVSKDPST------GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  272 (561)
Q Consensus       199 h~Aa~~g~~~v~~lL~~~~~~------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g  272 (561)
                      |.|+..|+..+...+...+..      .......|.||||.|+..++.+++++|+..++.+....+.+|+||||+|+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc
Confidence            999999998887777664332      23345678999999999999999999999998885556678999999999999


Q ss_pred             CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 008557          273 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       273 ~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      +.+++++|++ +|+|+|.+|.+|+||||+|+..++.+++++|++.+.+.
T Consensus       157 ~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         157 NPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             CHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             cHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            9999999999 89999999999999999999999999999999998764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.1e-30  Score=244.30  Aligned_cols=206  Identities=28%  Similarity=0.342  Sum_probs=183.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC---CcCCCCCCcH
Q 008557          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA---SIPARNGYDS  197 (561)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~---~~~~~~g~tp  197 (561)
                      +||||+||+.|+.+.|+.||+..+     .+++.+|.+|+||||+|+..|+.+++++|++++  +++   ...+..|.+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~-----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~   73 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM--ENVNLDDYPDDSGWTP   73 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTC--TTCCGGGCCCTTSCCH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC-----CcccccCCCCCCHHHHHHHcCCccccchhhhhh--cccccccccccccccc
Confidence            589999999999999999998754     458999999999999999999999999999983  343   3567889999


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCC--ccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPST--GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      +|+|+..+...+...+...+..  ....+..+.||++.++..++.+++++|++.+... +..|..|+||||+|+..|+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          74 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccc
Confidence            9999999998877776665543  3446778999999999999999999999998887 888999999999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccccCCCCCCHHHH
Q 008557          276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE-AGAAHSKDHGKPPSATKQ  334 (561)
Q Consensus       276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~  334 (561)
                      ++++|++..+.++|.+|.+|+||||+|+..|+.+++++|++ .|++++..+..+.+|...
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~  212 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV  212 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGG
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            99999995558899999999999999999999999999996 699999988888887653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=5.7e-30  Score=251.31  Aligned_cols=250  Identities=17%  Similarity=0.176  Sum_probs=201.1

Q ss_pred             CcccccccccccccCC-CCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHH
Q 008557           56 MEKQQSFHGVTIDKQP-STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLS  134 (561)
Q Consensus        56 ~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~  134 (561)
                      .+....+....++..+ ..+.|+++.+...|+.+..+.+.....+.+-     +.|+++|.+|.+|+||||+|+..|+.+
T Consensus        14 ~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l-----~~Gadvn~~d~~G~TpLh~A~~~g~~~   88 (277)
T d2fo1e1          14 YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI-----AAGADVNAMDCDENTPLMLAVLARRRR   88 (277)
T ss_dssp             SCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH-----HTCCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHH-----HcCCCccccCCCCCeeecccccccccc
Confidence            3344444433344344 3467999999999998888776544433332     578999999999999999999999999


Q ss_pred             HHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC-CCCCCcCCCCCCcHHHHHHHcCHH---HHH
Q 008557          135 RVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN-LETASIPARNGYDSFHVAAKQGHL---VVK  210 (561)
Q Consensus       135 ~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~-~~~~~~~~~~g~tpLh~Aa~~g~~---~v~  210 (561)
                      +|++||+++.      +++.+|.+|.||||+|+..|+.++++.+..... .......+..+.++.+.+...+..   ...
T Consensus        89 iv~~Ll~~Ga------d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (277)
T d2fo1e1          89 LVAYLMKAGA------DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA  162 (277)
T ss_dssp             HHHHHHHTTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHH
T ss_pred             cccccccccc------ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccc
Confidence            9999999854      478899999999999999999999999987521 134456788899999999987753   233


Q ss_pred             HHHhcCCC--------CccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhh
Q 008557          211 ALVSKDPS--------TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  282 (561)
Q Consensus       211 ~lL~~~~~--------~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~  282 (561)
                      .++.....        ..+..+..|+||||+++..++.+++++++.......+.+|..|+||||+|+..|+.+++++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~  242 (277)
T d2fo1e1         163 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  242 (277)
T ss_dssp             HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            33322211        2234567899999999999999999987766655568899999999999999999999999999


Q ss_pred             cCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          283 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       283 ~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                       .|+|+|.+|.+|+||||+|+..|+.+++++|.+.
T Consensus       243 -~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         243 -QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             -TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             -CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence             8999999999999999999999999999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.2e-30  Score=256.78  Aligned_cols=217  Identities=24%  Similarity=0.300  Sum_probs=178.4

Q ss_pred             cccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhc
Q 008557           74 RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS  153 (561)
Q Consensus        74 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  153 (561)
                      +++++..|+..|+.+..+.+.             ++|+++|..|.+|.||||+|+..|+.++|++|++++..      ..
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll-------------~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~------~~  100 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLL-------------ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN------IN  100 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-------------HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC------TT
T ss_pred             CchHHHHHHHcCCHHHHHHHH-------------HCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc------cc
Confidence            557788888888876666433             46889999999999999999999999999999988543      56


Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHh-------------------
Q 008557          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVS-------------------  214 (561)
Q Consensus       154 ~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~-------------------  214 (561)
                      ..+..+.||||.|+..|+.++++.|+++  +......|.+|.+|+++|+..++......+.                   
T Consensus       101 ~~~~~~~~~L~~a~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  178 (291)
T d1s70b_         101 QPDNEGWIPLHAAASCGYLDIAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML  178 (291)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhccccc--CcccccccccCccccccccccccchhcccccccccccccccccccccccc
Confidence            7788899999999999999999999998  5667778899999999999888763333322                   


Q ss_pred             --------cCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCC
Q 008557          215 --------KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  286 (561)
Q Consensus       215 --------~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~ga  286 (561)
                              .........+..|.||||.|+..|+.++++.|++.|+++ +.+|.+|+||||+|+..|+.++|++|++ +|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Ga  256 (291)
T d1s70b_         179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-NLC  256 (291)
T ss_dssp             HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTC
T ss_pred             ccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence                    222333456778999999999999999999999998887 8889999999999999999999999998 899


Q ss_pred             CcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          287 DVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       287 d~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      |+|.+|..|+||||+|++    +++++|.+.
T Consensus       257 dv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         257 DMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             CTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            999999999999999974    466666554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=3.8e-30  Score=254.95  Aligned_cols=209  Identities=21%  Similarity=0.247  Sum_probs=187.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      .+|.||||.||..|+.++|++||+++.      +++..|.+|.||||+|+..|+.++|++|+++  +.+....+..+.+|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Ga------dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~~  109 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGA------DINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIP  109 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCC------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCC------CCCccCCCCCcHHHHHHhcCCceeeeeeccc--cccccccccccccc
Confidence            346699999999999999999999854      4889999999999999999999999999998  56677788899999


Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCC-------------------------
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS-------------------------  252 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-------------------------  252 (561)
                      ||.|+..++..+.+.|...+......|..|.+|+++|+..++.+.++.++.....                         
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc
Confidence            9999999999999999998888888999999999999999999999988853211                         


Q ss_pred             -cccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCH
Q 008557          253 -VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA  331 (561)
Q Consensus       253 -~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~  331 (561)
                       .....+..|.||||.|+..|+.++++.|++ .|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..+..+.+|
T Consensus       190 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~Ta  268 (291)
T d1s70b_         190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (291)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             cccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence             124567889999999999999999999999 899999999999999999999999999999999999999888888887


Q ss_pred             HHHH
Q 008557          332 TKQL  335 (561)
Q Consensus       332 ~~~l  335 (561)
                      ....
T Consensus       269 L~~A  272 (291)
T d1s70b_         269 FDVA  272 (291)
T ss_dssp             TTSC
T ss_pred             HHHH
Confidence            6543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-30  Score=241.45  Aligned_cols=211  Identities=23%  Similarity=0.260  Sum_probs=162.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcH
Q 008557          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (561)
Q Consensus       118 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tp  197 (561)
                      .+|+||||+||..|+.++|+.|++.....  +.+++.+|..|+||||+|+..|+.+++++|+++  ++..+..+.+|.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~--g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCccCCCCCccceehhcccccccccccccc--cccccccccccccc
Confidence            36999999999999999999998742111  345889999999999999999999999999998  66777888999999


Q ss_pred             HHHHHHcCHHHHHHHHhcCC----CCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCC
Q 008557          198 FHVAAKQGHLVVKALVSKDP----STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  273 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~----~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~  273 (561)
                      ++.|...++..+........    ...+..+....+|||.+...........|.....+.....+..|.+|||.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            99999998875555443321    22233445566777777777777777777776666555666677778888887777


Q ss_pred             HHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHH
Q 008557          274 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  333 (561)
Q Consensus       274 ~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  333 (561)
                      ..+++.+++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|..
T Consensus       157 ~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~  215 (228)
T d1k1aa_         157 LSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM  215 (228)
T ss_dssp             HHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             hhhhhhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            777777777 67777777777788888888888888888888888777776666666643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.3e-30  Score=247.16  Aligned_cols=199  Identities=18%  Similarity=0.137  Sum_probs=166.9

Q ss_pred             CCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhH
Q 008557           71 PSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKD  150 (561)
Q Consensus        71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~  150 (561)
                      ++.|.|+++.+...|+.+..+.+....          .....++.+|..|+||||+||..|+.++++.|++++      +
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~----------a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g------a   69 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFS----------AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG------A   69 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHH----------TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------C
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcC----------CCcccccCcCCCCCCccchHHhhccccccccccccc------c
Confidence            456779999999999877666443211          011236678899999999999999999999999985      4


Q ss_pred             hhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC---------------------------------------------C
Q 008557          151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL---------------------------------------------E  185 (561)
Q Consensus       151 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~---------------------------------------------~  185 (561)
                      +++.+|.+|.||||+|+..|+.+++++|++....                                             .
T Consensus        70 ~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T d1oy3d_          70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (255)
T ss_dssp             CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             cccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCc
Confidence            4889999999999999999999999999875211                                             1


Q ss_pred             CCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcc-ccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchH
Q 008557          186 TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA  264 (561)
Q Consensus       186 ~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~-~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp  264 (561)
                      ..+.+|.+|.||||+|+..|+.++.++|.+.+.... ..+..|.||||+|++.|+.+++++|+++|+++ +.+|..|+||
T Consensus       150 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~g~t~  228 (255)
T d1oy3d_         150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTP  228 (255)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             ccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            134467889999999999999988888777665554 45678999999999999999999999999887 9999999999


Q ss_pred             HHHHHHhCCHHHHHHHhhcCCCC
Q 008557          265 LHIAIKKGRTQIVRCLLSIEGID  287 (561)
Q Consensus       265 Lh~Aa~~g~~~iv~~LL~~~gad  287 (561)
                      ||+|+..|+.+++++|++ +||+
T Consensus       229 L~~A~~~~~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         229 LGSALLRPNPILARLLRA-HGAP  250 (255)
T ss_dssp             HHHHHTSSCHHHHHHHHH-TTCC
T ss_pred             HHHHHHCCCHHHHHHHHH-cCCC
Confidence            999999999999999999 7996

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.2e-28  Score=249.06  Aligned_cols=234  Identities=26%  Similarity=0.352  Sum_probs=190.9

Q ss_pred             ccccCCCCcccccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 008557           66 TIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA  145 (561)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~  145 (561)
                      ..+..+..+...+..+...+.....+.+.             +.+.+++..+.+|.+|||+|+..|+.++++.|+.++..
T Consensus       124 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll-------------~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~  190 (408)
T d1n11a_         124 SQACMTKKGFTPLHVAAKYGKVRVAELLL-------------ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  190 (408)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             cccccccccchHHHHHHHcCCHHHHHHHH-------------HcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc
Confidence            33444444445555666656554433222             34566777777788888888888888888888776542


Q ss_pred             cc---------------------------hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHH
Q 008557          146 NE---------------------------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF  198 (561)
Q Consensus       146 ~~---------------------------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpL  198 (561)
                      ..                           ........+..|.||||+|+..++.++++.++..  ....+..+..|.|||
T Consensus       191 ~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~l  268 (408)
T d1n11a_         191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPL  268 (408)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHH
T ss_pred             ccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcc--ccccccccCCCCChh
Confidence            11                           0112334567788999999999999999999987  567777899999999


Q ss_pred             HHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHH
Q 008557          199 HVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  278 (561)
Q Consensus       199 h~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~  278 (561)
                      |.|+..++..+.++|.+.+.+++..+..+.||||.|+..++.++++++++.|.++ +.+|.+|+||||+|++.|+.++|+
T Consensus       269 ~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~  347 (408)
T d1n11a_         269 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVT  347 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999989888889999999999999999999999999999887 999999999999999999999999


Q ss_pred             HHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          279 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       279 ~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      +|++ +|+|+|.+|.+|+||||+|++.|+.+++++|..
T Consensus       348 ~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         348 LLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999 899999999999999999999999999987644

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.4e-28  Score=231.23  Aligned_cols=198  Identities=21%  Similarity=0.262  Sum_probs=179.2

Q ss_pred             ccCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 008557          108 ERKKNKDS-PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET  186 (561)
Q Consensus       108 ~~~~~~~~-~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~  186 (561)
                      +.|+++|. .|.+|.||||+||..|+.++++.|++.+.      .++.++..+.+|++.++..++.......... ....
T Consensus        10 ~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   82 (209)
T d1ot8a_          10 AQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA------DANSQDNTGRTPLHAAVAADAMGVFQILLRN-RATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-TTCC
T ss_pred             HCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcc------ccccccccccccccccccccccccccccccc-cccc
Confidence            45666665 48899999999999999999999999854      3789999999999999999999988887776 3444


Q ss_pred             CCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHH
Q 008557          187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH  266 (561)
Q Consensus       187 ~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh  266 (561)
                      .......|.++.+.+..........+|...+.+.+.+|..|+||||+|+..+..++++.+++.+.++ +..|.+|+||||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~  161 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLF  161 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc-cccccccccccc
Confidence            4556677889999999999888889999999888899999999999999999999999999999887 999999999999


Q ss_pred             HHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 008557          267 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  314 (561)
Q Consensus       267 ~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~L  314 (561)
                      +|+..|+.+++++||+ .|+|+|.+|..|+||||+|++.|+.+++++|
T Consensus       162 ~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999 8999999999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-27  Score=231.17  Aligned_cols=236  Identities=20%  Similarity=0.184  Sum_probs=188.5

Q ss_pred             cccccchhhhhHHHHHHHHHHHHHHhhhcCCCccCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCccc-------
Q 008557           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANE-------  147 (561)
Q Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-------  147 (561)
                      +.+..|...|..+..+.+.             ++|+++|.++. .|+||||+|+..|+.++++.|++.+....       
T Consensus         7 ~~L~~Ai~~~~~e~vk~Ll-------------~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~   73 (285)
T d1wdya_           7 HLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHH-------------HCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccc
Confidence            5566666667665554432             57888987764 69999999999999999999998765210       


Q ss_pred             --------------------hhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC--------CcCCCCCCcHHH
Q 008557          148 --------------------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA--------SIPARNGYDSFH  199 (561)
Q Consensus       148 --------------------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~--------~~~~~~g~tpLh  199 (561)
                                          ........+..+.|+|++|+..|+..+++.++........        ...+..|.||||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T d1wdya_          74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             hhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHH
Confidence                                0011233467788999999999999999888876322111        123456899999


Q ss_pred             HHHHcCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHh----CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCH
Q 008557          200 VAAKQGHLVVKALVS-KDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  274 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~-~~~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~  274 (561)
                      +|+..|+..+.++|. ..+.+++..|..|.++++.+..    .+..+++++|++.|+++ +.+|..|.||||+|+..|+.
T Consensus       154 ~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~  232 (285)
T d1wdya_         154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcH
Confidence            999999887666554 5678888889999988887654    34457999999999987 88999999999999999999


Q ss_pred             HHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccC
Q 008557          275 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  325 (561)
Q Consensus       275 ~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~  325 (561)
                      +++++||+..|+++|.+|.+|.||||+|++.|+.+++++|+++||+++..+
T Consensus       233 ~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            999999987799999999999999999999999999999999999987654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=2.4e-27  Score=232.39  Aligned_cols=223  Identities=18%  Similarity=0.240  Sum_probs=183.4

Q ss_pred             CCCCCC-CCCChHHHHHHHcCCHHHHHHHHhcCCcc--chhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCC
Q 008557          112 NKDSPG-KRGDLQLHLAARAGNLSRVMEILQSCDAN--EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS  188 (561)
Q Consensus       112 ~~~~~~-~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~  188 (561)
                      .+|..+ +.|+||||+||..|+.++|+.|+.+....  ..|+++|.+|.+|+||||+|+..|+.++|++|+++  +++++
T Consensus        24 ~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~--Gad~n  101 (277)
T d2fo1e1          24 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPT  101 (277)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSC
T ss_pred             CCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccc--ccccc
Confidence            344455 46999999999999999999987653211  01346899999999999999999999999999998  67889


Q ss_pred             cCCCCCCcHHHHHHHcCHHHHHHHHhcCC---CCccccCCCCCcHHHHHHhCCCHH---HHHHHhcCCC-------Cccc
Q 008557          189 IPARNGYDSFHVAAKQGHLVVKALVSKDP---STGFRTDKKGQTALHMAVKGQNED---IVLELIRPDP-------SVLK  255 (561)
Q Consensus       189 ~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~---~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~-------~~~n  255 (561)
                      .+|.+|.||||+|+..++..+...+....   ...+..+..+.++.+.+...+..+   .+..+.+...       ...+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            99999999999999999988877776543   234456788999999999877654   3333333221       1135


Q ss_pred             ccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          256 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       256 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      ..+..|.||||+++..++.+++++++...+.+.+.+|..|.||||+|+..|+.+++++|+++|++++..+..+.+|....
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            56778999999999999999999888768999999999999999999999999999999999999999888998887654


Q ss_pred             H
Q 008557          336 K  336 (561)
Q Consensus       336 ~  336 (561)
                      .
T Consensus       262 ~  262 (277)
T d2fo1e1         262 Q  262 (277)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=206.08  Aligned_cols=154  Identities=29%  Similarity=0.427  Sum_probs=87.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHH
Q 008557          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (561)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~A  201 (561)
                      +|||+||..|+.++|+.|++++.      +++.+|.+|.||||+|+ .|+.+++++|+++  +.+++..           
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~------d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~~~~-----------   62 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV------NVNAQNGFGRTALQVMK-LGNPEIARRLLLR--GANPDLK-----------   62 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC------CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT--TCCTTCC-----------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC------CcCccCCcccccccccc-ccccccccccccc--ccccccc-----------
Confidence            56666666666666666666533      35666666666666554 5666666666665  3444444           


Q ss_pred             HHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHh
Q 008557          202 AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  281 (561)
Q Consensus       202 a~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL  281 (561)
                                            +..|.+||+.++..++.+.++.|++.+.+. +..|..|.+|||+|+..++.+++++|+
T Consensus        63 ----------------------~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll  119 (156)
T d1ihba_          63 ----------------------DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLV  119 (156)
T ss_dssp             ----------------------CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------cccCcccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence                                  444555555555555555555555555444 455555555555555555555555555


Q ss_pred             hcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 008557          282 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  318 (561)
Q Consensus       282 ~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~g  318 (561)
                      ++.+.+++.+|..|+||||+|+..++.+++++|+++|
T Consensus       120 ~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            5333355555555555555555555555555555554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-26  Score=204.04  Aligned_cols=138  Identities=23%  Similarity=0.269  Sum_probs=113.0

Q ss_pred             cHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHH
Q 008557          196 DSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  275 (561)
Q Consensus       196 tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~  275 (561)
                      +|||+||..|+.++++.|.+.+.+++.+|.+|+||||+|+ .|+.+++++|++.++++ +.++.+|.|||+.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccccc
Confidence            3444444444444444444444455566788899999876 68999999999999987 899999999999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC-cccccCCCCCCHHHHHH
Q 008557          276 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDHGKPPSATKQLK  336 (561)
Q Consensus       276 iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga-~~~~~~~~~~~~~~~l~  336 (561)
                      .+..|+. .+.+++..|..|.+|+|+|+..++.+++++|+++|+ +.+..+..+.+|.....
T Consensus        81 ~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~  141 (156)
T d1ihba_          81 TLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  141 (156)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH
Confidence            9999998 799999999999999999999999999999999997 67777788888876543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=9.3e-26  Score=201.28  Aligned_cols=149  Identities=26%  Similarity=0.336  Sum_probs=121.4

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  240 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~  240 (561)
                      ||||.||+.|+.++|++||+++  ++.. .|..|+||||+|+..++..+...+..........+..+.+++|.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcC--CCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777777777777777777763  3333 567777777777777777766666666666666677788899999999999


Q ss_pred             HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 008557          241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  314 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~L  314 (561)
                      +++++++..+.+. +.+|.+|+||||+|+..|+.+++++|++ .|+|+|.+|.+|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999888876 7889999999999999999999999998 7999999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=201.10  Aligned_cols=150  Identities=23%  Similarity=0.328  Sum_probs=95.9

Q ss_pred             HHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHH
Q 008557          163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI  242 (561)
Q Consensus       163 Lh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  242 (561)
                      ||.||..|+.++|+.||+. ++.+++..|..|+||||+|+..+ .++.+.|...+.+++..+..|.+|++.++..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~-~~~~~n~~d~~g~t~L~~A~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHHSCTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHh-CCCCCCccCCCCCcccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4444444444444444443 13334444444444444443322 222222222333444556667778888888888888


Q ss_pred             HHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          243 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       243 v~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      ++.+++.++++ +.+|..|+||||+|+..|+.+++++|+.  |++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus        84 ~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          84 LKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccc-ccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            88888877776 7778888888888888888888877763  677888888888888888888888888888765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=202.17  Aligned_cols=152  Identities=24%  Similarity=0.298  Sum_probs=139.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHH
Q 008557          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (561)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~A  201 (561)
                      +.||.||..|+.++|+.||+.++     .+++..|..|+||||+|+ .|+.+++++|+++  +.+++..+..|.+|++.|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~-----~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~   75 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHREL-----VHPDALNRFGKTALQVMM-FGSTAIALELLKQ--GASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC-----CCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCC-----CCCCccCCCCCccccccc-ccccccccccccc--cccccccccccccccccc
Confidence            45999999999999999998754     348899999999999987 5899999999998  567888899999999999


Q ss_pred             HHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHh
Q 008557          202 AKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  281 (561)
Q Consensus       202 a~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL  281 (561)
                      +..++..+.+++...+.+++.+|..|+||||+|+..|+.+++++|+ .++++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus        76 ~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999888888899999999999999999999999888 56776 899999999999999999999999999


Q ss_pred             hc
Q 008557          282 SI  283 (561)
Q Consensus       282 ~~  283 (561)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            73

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.4e-25  Score=197.57  Aligned_cols=150  Identities=25%  Similarity=0.314  Sum_probs=137.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHH
Q 008557          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV  200 (561)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~  200 (561)
                      .||||.||+.|+.++|+.||+++++      ++ .|..|.||||+|+..++.++++.++..  .......+..+.++++.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~------~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   73 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP------FT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC------CC-CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC------cc-cccCCCccccccccccccccccccccc--ccccccccccccccccc
Confidence            4999999999999999999998653      33 689999999999999999999999987  44556677788899999


Q ss_pred             HHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHH
Q 008557          201 AAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  280 (561)
Q Consensus       201 Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~L  280 (561)
                      ++...+....+.+...+.+...+|..|+||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+.+|+.+++++|
T Consensus        74 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999998988899999999999999999999999999999999987 89999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=3.4e-27  Score=240.37  Aligned_cols=198  Identities=20%  Similarity=0.179  Sum_probs=150.2

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHH---HHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCC
Q 008557          111 KNKDSPGKRGDLQLHLAARAGNLSRVME---ILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA  187 (561)
Q Consensus       111 ~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  187 (561)
                      .+++.++..|.||||+||.+|+.++++.   |++.+      ++++.+|.+|+||||+||..||.++|++|+++  +++.
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~------~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~--g~~~  152 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD------EIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTE  152 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTT
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC------CcccccCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCc
Confidence            3445567889999999999999887776   45553      45888899999999999999999999999998  4455


Q ss_pred             CcCC--CCCCcHHHHHHHcCHHHHHHHHhcCCCCc---cccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcc--------
Q 008557          188 SIPA--RNGYDSFHVAAKQGHLVVKALVSKDPSTG---FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL--------  254 (561)
Q Consensus       188 ~~~~--~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--------  254 (561)
                      +..+  .+|+||||+|+..||.+++++|...+...   +..+.+|.||+|.|+.+|+.++|++|++.|+++.        
T Consensus       153 ~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence            5443  56899999999999999888888876543   2334566788888899999999999998753220        


Q ss_pred             ---------------------------------cccc-------cCCchHHHHHHHhCCHHHHHHHhhcCCCC-----cc
Q 008557          255 ---------------------------------KLED-------NKGNTALHIAIKKGRTQIVRCLLSIEGID-----VN  289 (561)
Q Consensus       255 ---------------------------------n~~d-------~~G~TpLh~Aa~~g~~~iv~~LL~~~gad-----~n  289 (561)
                                                       +..+       ..+.++|+.|+..|+.+++++|++ .+..     .+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~-~~~~~~~~~~~  311 (346)
T d2ajaa1         233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTA  311 (346)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCC
T ss_pred             cCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh-CcChhhhcccc
Confidence                                             0000       112478888888999999999998 4442     34


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 008557          290 SLNKAGESPLDVAEKLGNTELFSLLKEA  317 (561)
Q Consensus       290 ~~d~~G~TpL~~A~~~~~~~i~~~Ll~~  317 (561)
                      ..+.+|+||||+|++.|+.+++++|++.
T Consensus       312 ~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         312 TIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             SSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            4556899999999999999999999864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-25  Score=209.72  Aligned_cols=176  Identities=24%  Similarity=0.277  Sum_probs=154.7

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcC--CCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 008557          158 EGETPLYVAAESGHALIVEEMLQHM--NLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAV  235 (561)
Q Consensus       158 ~g~TpLh~Aa~~g~~~iv~~LL~~~--~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~  235 (561)
                      +|.||||+|+..|+.+++..|++..  .+.+++.+|.+|.||||+|+..|+..+.++|...+++++..|..|+||||.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            5999999999999976666555431  26678889999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCC-----cccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCccccc-CCCCCHHHHHHHcCCHH
Q 008557          236 KGQNEDIVLELIRPDPS-----VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTE  309 (561)
Q Consensus       236 ~~g~~~iv~~Ll~~~~~-----~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d-~~G~TpL~~A~~~~~~~  309 (561)
                      ..++.++++.|+..+..     ..+.....|.||||.|+..++.+++++|+. .|.+++..+ .+|.||||+|+..|+.+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc-cCcccccccccCCCCccccccccccHH
Confidence            99999999999987543     234456678999999999999999999998 788888776 57999999999999999


Q ss_pred             HHHHHHHcCCcccccCCCCCCHHHH
Q 008557          310 LFSLLKEAGAAHSKDHGKPPSATKQ  334 (561)
Q Consensus       310 i~~~Ll~~ga~~~~~~~~~~~~~~~  334 (561)
                      ++++|+++|++++..+..+.+|...
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             HHHHHHhcCCcccccCCCCCCHHHH
Confidence            9999999999999999988888643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-23  Score=206.41  Aligned_cols=210  Identities=23%  Similarity=0.218  Sum_probs=162.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccC-CCCCCcHHHHHHHhCcHHHHHHHHhcCCCC------------
Q 008557          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK-NQEGETPLYVAAESGHALIVEEMLQHMNLE------------  185 (561)
Q Consensus       119 ~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~------------  185 (561)
                      +++|+||.|++.|+.++|+.||+++.+      ++.+ +..|.||||+|+..|+.+++++|++.+...            
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~d------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCC------cCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhH
Confidence            367999999999999999999998643      6655 457999999999999999999999873211            


Q ss_pred             -------------------CCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCcc----------ccCCCCCcHHHHHHh
Q 008557          186 -------------------TASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGF----------RTDKKGQTALHMAVK  236 (561)
Q Consensus       186 -------------------~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~----------~~d~~g~tpLh~A~~  236 (561)
                                         .....+..|.|+++.|+..|+......+.......+          ..+..|.||||+|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHH
Confidence                               111234456677777777766654444443322221          235568899999999


Q ss_pred             CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhC----CHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 008557          237 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG----RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  312 (561)
Q Consensus       237 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g----~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~  312 (561)
                      +|+.+++++|++.....++..|..|.++++.+...+    ..+++++|++ .|+++|.+|..|.||||.|+..|+.++++
T Consensus       158 ~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~v~  236 (285)
T d1wdya_         158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHHHH
Confidence            999999999997643334888888988888766533    4578899998 79999999999999999999999999999


Q ss_pred             HHHH-cCCcccccCCCCCCHHHHH
Q 008557          313 LLKE-AGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       313 ~Ll~-~ga~~~~~~~~~~~~~~~l  335 (561)
                      +|++ .|++++..+..+.||....
T Consensus       237 ~lL~~~g~din~~d~~G~TpL~~A  260 (285)
T d1wdya_         237 RLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             HHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             HHHHcCCCCCcCCCCCCCCHHHHH
Confidence            9997 5899988888888887543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=9.3e-26  Score=225.15  Aligned_cols=184  Identities=20%  Similarity=0.239  Sum_probs=129.1

Q ss_pred             ccCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcH-------HHHHHHH
Q 008557          108 ERKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA-------LIVEEML  179 (561)
Q Consensus       108 ~~~~~~~~~-~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~-------~iv~~LL  179 (561)
                      ..+.++|.+ |..|+||||+||..|+.++|+.||+++      ++++.+|..|+||||.||..++.       ++++++.
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g------ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            456778866 899999999999999999999999985      44889999999999999987763       4444443


Q ss_pred             hcCCCCCCCcCCCCCCcHHHHHHHcCHH-------------HHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHH
Q 008557          180 QHMNLETASIPARNGYDSFHVAAKQGHL-------------VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  246 (561)
Q Consensus       180 ~~~~~~~~~~~~~~g~tpLh~Aa~~g~~-------------~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  246 (561)
                      .     .....|..|+||||.|+..+..             .+..++..........+..+.++++.+........+..+
T Consensus       168 ~-----~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
T d1sw6a_         168 P-----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL  242 (301)
T ss_dssp             G-----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred             h-----hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHH
Confidence            3     3456788999999998865542             222333444444445566677777777665554444433


Q ss_pred             hcC--CCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHH
Q 008557          247 IRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  303 (561)
Q Consensus       247 l~~--~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~  303 (561)
                      ...  ....+|.+|.+|+||||+|++.|+.++|++|++ .|+|++.+|+.|.||||+|+
T Consensus       243 ~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         243 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             hhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            211  012248899999999999999999999999999 89999999999999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.4e-23  Score=196.76  Aligned_cols=193  Identities=23%  Similarity=0.243  Sum_probs=171.1

Q ss_pred             HHHHHHHHhcCCccchhHhhcc-CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHH
Q 008557          133 LSRVMEILQSCDANEAKDLLSK-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKA  211 (561)
Q Consensus       133 ~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~  211 (561)
                      .|+|+.||++      +.+++. .|.+|.||||+||..|+.+++++|++.  +..++..+..+.++++.++..++.....
T Consensus         2 ~~~v~~Ll~~------g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~--g~~~n~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
T d1ot8a_           2 AQVISDLLAQ------GAELNATMDKTGETSLHLAARFARADAAKRLLDA--GADANSQDNTGRTPLHAAVAADAMGVFQ   73 (209)
T ss_dssp             HHHHHHHHHH------HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHC------CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh--cccccccccccccccccccccccccccc
Confidence            4899999998      456776 589999999999999999999999998  6778889999999999999998876555


Q ss_pred             HHhc-CCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCccc
Q 008557          212 LVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS  290 (561)
Q Consensus       212 lL~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~  290 (561)
                      .... ........+..|.++.+.+.........+.|...+.++ +.+|..|+||||.|+..+..++++.|++ .+.++|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~  151 (209)
T d1ot8a_          74 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDA  151 (209)
T ss_dssp             HHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTC
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecc-ccccccc
Confidence            4444 33344445677899999999999999999999998887 8899999999999999999999999999 7999999


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHHHH
Q 008557          291 LNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  335 (561)
Q Consensus       291 ~d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~l  335 (561)
                      .|..|.||||+|+..|+.+++++|+++|++++..+..+.+|....
T Consensus       152 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         152 QDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999999998888888887653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-23  Score=193.16  Aligned_cols=179  Identities=25%  Similarity=0.281  Sum_probs=153.8

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhc--CCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 008557          157 QEGETPLYVAAESGHALIVEEMLQH--MNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMA  234 (561)
Q Consensus       157 ~~g~TpLh~Aa~~g~~~iv~~LL~~--~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A  234 (561)
                      .+|+||||+||..|+.++|+.|++.  ..+.+++..|.+|+||||+|+..|+.++.++|...++..+..+..|.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            3699999999999999999999863  13678889999999999999999999999999999999989999999999999


Q ss_pred             HhCCCHHHHHHHhcCCC---CcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCC-cccccCCCCCHHHHHHHcCCHHH
Q 008557          235 VKGQNEDIVLELIRPDP---SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-VNSLNKAGESPLDVAEKLGNTEL  310 (561)
Q Consensus       235 ~~~g~~~iv~~Ll~~~~---~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad-~n~~d~~G~TpL~~A~~~~~~~i  310 (561)
                      ...++.++++.+.....   ...+..+....+|||.+...........|.. ...+ ....+..|.+||+.|+..+..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhc-cccccccccccchhhHHHHHHHhhhhhh
Confidence            99999999988876432   2235566788899999999999999999988 4444 44556789999999999999999


Q ss_pred             HHHHHHcCCcccccCCCCCCHHHHHH
Q 008557          311 FSLLKEAGAAHSKDHGKPPSATKQLK  336 (561)
Q Consensus       311 ~~~Ll~~ga~~~~~~~~~~~~~~~l~  336 (561)
                      ++.++++|......+..+.+|.....
T Consensus       160 ~~~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         160 VQLLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             hhhhhhhccccccccccCcchHHHHH
Confidence            99999999999888888888765543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=7.6e-25  Score=222.85  Aligned_cols=172  Identities=20%  Similarity=0.151  Sum_probs=131.5

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCC-C
Q 008557          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-T  186 (561)
Q Consensus       108 ~~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~-~  186 (561)
                      ..++++|.+|.+|+||||+||+.||.++|++|++.+++.    .....+.+|.||||+||..||.++|++|++.+... .
T Consensus       114 ~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~----~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~  189 (346)
T d2ajaa1         114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE----IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT  189 (346)
T ss_dssp             -CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT----HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             hCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc----cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc
Confidence            678999999999999999999999999999999986532    12223456899999999999999999999983211 2


Q ss_pred             CCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccc---------------------------------cCCC-------
Q 008557          187 ASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFR---------------------------------TDKK-------  226 (561)
Q Consensus       187 ~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~---------------------------------~d~~-------  226 (561)
                      .+..+.+|.||+|.|+.+||.+++++|.+.+++.+.                                 ...+       
T Consensus       190 ~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  269 (346)
T d2ajaa1         190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT  269 (346)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred             cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHh
Confidence            234456678889999999999888888765432110                                 0111       


Q ss_pred             ---------CCcHHHHHHhCCCHHHHHHHhcCCCCc----ccccccCCchHHHHHHHhCCHHHHHHHhhc
Q 008557          227 ---------GQTALHMAVKGQNEDIVLELIRPDPSV----LKLEDNKGNTALHIAIKKGRTQIVRCLLSI  283 (561)
Q Consensus       227 ---------g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  283 (561)
                               +.++|+.|+..|+.+++++|++.+...    .+..+.+|+||||+|++.|+.++|++||+.
T Consensus       270 ~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         270 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                     235788888889999999999876532    234456899999999999999999999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=174.90  Aligned_cols=116  Identities=16%  Similarity=0.232  Sum_probs=78.1

Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCc-hHHHHHHHhCCHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKGRTQI  276 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~Aa~~g~~~i  276 (561)
                      ||+|+..|+.+++++|.+.+.+++.+|..|.||||+|+ .|+.+++++|++.|+++ +.+|..|. ||||+|+..|+.++
T Consensus         7 L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~   84 (125)
T d1bi7b_           7 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDT   84 (125)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccccccc
Confidence            33333333333333333333344455666777777554 57778888888877776 66666654 58888888888888


Q ss_pred             HHHHhhcCCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 008557          277 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  316 (561)
Q Consensus       277 v~~LL~~~gad~n~~d~~G~TpL~~A~~~~~~~i~~~Ll~  316 (561)
                      +++|++ .|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        85 v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          85 LVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888887 678888888888888888888888888877764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-22  Score=173.82  Aligned_cols=120  Identities=20%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCC-cHHHHHHhC
Q 008557          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQ-TALHMAVKG  237 (561)
Q Consensus       159 g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~-tpLh~A~~~  237 (561)
                      +.++||+||..|+.++|++|+++  +.+++.++.+|.||||+|+ .|+..+.++|.+.+.+++..|..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc--CCccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            34566666666666666666665  4555666666666666553 4556666666666666666666655 688999988


Q ss_pred             CCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhh
Q 008557          238 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  282 (561)
Q Consensus       238 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~  282 (561)
                      |+.+++++|++.|+++ +.+|.+|+||||+|+.+|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999988876 8888899999999999999999988875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.2e-22  Score=198.38  Aligned_cols=181  Identities=16%  Similarity=0.151  Sum_probs=126.9

Q ss_pred             hhccC-CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHH----HHHHHHhcCCCCccccCC
Q 008557          151 LLSKK-NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL----VVKALVSKDPSTGFRTDK  225 (561)
Q Consensus       151 ~~~~~-~~~g~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~----~v~~lL~~~~~~~~~~d~  225 (561)
                      ++|.. |.+|+||||+||..|+.++|++|+++  +++++.+|..|+||||.|+..++.    .+..++.........+|.
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~  175 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS  175 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccc
Confidence            35655 89999999999999999999999998  678899999999999999998863    122233222334566789


Q ss_pred             CCCcHHHHHHhCCC----HH--------HHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhc--CCCCcccc
Q 008557          226 KGQTALHMAVKGQN----ED--------IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI--EGIDVNSL  291 (561)
Q Consensus       226 ~g~tpLh~A~~~g~----~~--------iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~--~gad~n~~  291 (561)
                      .|+||||+++..+.    ..        ++.++++.+.......+..+.++++.+........+..+...  .+..+|.+
T Consensus       176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  255 (301)
T d1sw6a_         176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ  255 (301)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred             ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCC
Confidence            99999999885433    22        345556666655566677777888877766655544433210  12237899


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccCCCCCCHHH
Q 008557          292 NKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  333 (561)
Q Consensus       292 d~~G~TpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  333 (561)
                      |.+|+||||+|+..|+.+++++|+++||+++..++.+.+|.+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999999999999999988864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=8.6e-23  Score=174.13  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=59.5

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  240 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~  240 (561)
                      |||++|++.|+.++|++|+++  +.+++..                                 |..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~--g~d~n~~---------------------------------~~~g~t~lh~A~~~~~~   48 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK--GEDVNRT---------------------------------LEGGRKPLHYAADCGQL   48 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT--TCCCCCC---------------------------------SSSSCCTTHHHHHHSTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHh--hhccccc---------------------------------ccccccccccccccccc
Confidence            666666666666666666665  3344433                                 44445555555555555


Q ss_pred             HHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 008557          241 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  302 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A  302 (561)
                      +++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|+|+|.+|.+|.||||+|
T Consensus        49 ~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          49 EILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             THHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCCHHHHHHHT-TCCCSSSSSSSTCCCCCTC
T ss_pred             cccccccccccee-eecccccccchhhhhhcCchhhhhhhhc-ccccceeeCCCCCCHHHHH
Confidence            5555555555554 5555555555555555555555555555 4555555555555555555

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=4.7e-23  Score=175.81  Aligned_cols=104  Identities=25%  Similarity=0.288  Sum_probs=99.1

Q ss_pred             CcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHHHHHHHcCC
Q 008557          228 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN  307 (561)
Q Consensus       228 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL~~A~~~~~  307 (561)
                      .|||++|+++|+.++|++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCc
Confidence            48999999999999999999999987 9999999999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccCCCCCCHHH
Q 008557          308 TELFSLLKEAGAAHSKDHGKPPSATK  333 (561)
Q Consensus       308 ~~i~~~Ll~~ga~~~~~~~~~~~~~~  333 (561)
                      .+++++|+++|++++..+..+.+|..
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~  106 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALE  106 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCC
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHH
Confidence            99999999999999988888887753

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.8e-22  Score=171.14  Aligned_cols=119  Identities=22%  Similarity=0.229  Sum_probs=80.6

Q ss_pred             HHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHH
Q 008557          198 FHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  277 (561)
Q Consensus       198 Lh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv  277 (561)
                      ||.|+..|+.++++.|.+.+.+++.+|.+|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.+|+.+++
T Consensus         5 L~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHHHH
Confidence            33333333333333333334444555666777777777777788888888777776 77788888888888888888888


Q ss_pred             HHHhhcCCCCcccccC-CCCCHHHHH--HHcCCHHHHHHHHHcC
Q 008557          278 RCLLSIEGIDVNSLNK-AGESPLDVA--EKLGNTELFSLLKEAG  318 (561)
Q Consensus       278 ~~LL~~~gad~n~~d~-~G~TpL~~A--~~~~~~~i~~~Ll~~g  318 (561)
                      ++|++ .|++++.++. .|+||++++  ...|+.+++++|+..+
T Consensus        84 ~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          84 KFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            88887 6888877664 477777665  3557778888877653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.8e-21  Score=166.09  Aligned_cols=119  Identities=21%  Similarity=0.257  Sum_probs=81.6

Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCCCcCCCCCCcHHHHHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCH
Q 008557          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  240 (561)
Q Consensus       161 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~  240 (561)
                      ++||.||..|+.++|++|+++  +.+++.+|.+|+||||+|+..|+..+.++|.+.+.+.+.+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc--CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            456666666666666666665  445566666666666666666666666666555666666777888888888888888


Q ss_pred             HHHHHHhcCCCCcccccc-cCCchHHHHH--HHhCCHHHHHHHhh
Q 008557          241 DIVLELIRPDPSVLKLED-NKGNTALHIA--IKKGRTQIVRCLLS  282 (561)
Q Consensus       241 ~iv~~Ll~~~~~~~n~~d-~~G~TpLh~A--a~~g~~~iv~~LL~  282 (561)
                      +++++|+++|+++ +..+ .+|+||++++  +..|+.+++++|+.
T Consensus        81 ~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            8888888888776 5444 3577776654  46677888888876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.7e-20  Score=166.03  Aligned_cols=97  Identities=29%  Similarity=0.417  Sum_probs=89.7

Q ss_pred             cCCCCCcHHHHHHh---CCCHHHHHHHhcCCCCcccccccCCchHHHHHHHhCCHHHHHHHhhcCCCCcccccCCCCCHH
Q 008557          223 TDKKGQTALHMAVK---GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL  299 (561)
Q Consensus       223 ~d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~gad~n~~d~~G~TpL  299 (561)
                      .+..|+||||+|++   .++.++|++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.+|+|||
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL  118 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPL  118 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccccccccccccccccc-cCccccccCCCCCCHH
Confidence            36678999999996   47889999999999987 9999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCcc
Q 008557          300 DVAEKLGNTELFSLLKEAGAAH  321 (561)
Q Consensus       300 ~~A~~~~~~~i~~~Ll~~ga~~  321 (561)
                      |+|++.|+.+++++|+++++..
T Consensus       119 ~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         119 DIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999988754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=9.9e-20  Score=162.27  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCccchhHhhccCCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCCCcCCCCCCcHHH
Q 008557          123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES---GHALIVEEMLQHMNLETASIPARNGYDSFH  199 (561)
Q Consensus       123 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~~~~~~~~~~~~~g~tpLh  199 (561)
                      .|+.|++.+++..+..++..+.+..........+..|+||||+|+..   |+.++|++|+++  +.+++.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccccc
Confidence            45688899999999988877543222222334467788888888874   677888888887  4555555555555555


Q ss_pred             HHHHcCHHHHHHHHhcCCCCccccCCCCCcHHHHHHhCCCHHHHHHHhcCC
Q 008557          200 VAAKQGHLVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD  250 (561)
Q Consensus       200 ~Aa~~g~~~v~~lL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  250 (561)
                      +|+..|+..+.++|.+.+++++.+|..|+||||+|++.|+.+++++|++.+
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            555555444444444444444444444444444444444444444444433