Citrus Sinensis ID: 008601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
Protein Sequence
MMERRRSNLSDDPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDSENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHcccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHccccccccccccHHHHcccccccccccEEEEEEccccHHHHHHHHccccccHHHHHHHHccccccHHHcccccccccEEEcccEEEEEEcccccccccccccEEEEEEEEEcccEEEEEEEccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHcccccccccccccHHHccccccccccccEEEEEEccccHHHHHHHHHccccHHHHHHHHHcccccccccccccEEEccEEccccEEEEEEEcccccccccHccccEEEEEEEcccEEEEEEEcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mmerrrsnlsddpsnsqnhnmkkpesnkkyankdvmprcelwtDGLICAFEFIqgrkrsvtsksdsrtlsdsenskkkvpaeglgeaspesdrNKLLDSLLLdelrggqsfplgdsrhnrlsqssQFNAAArfegshwvpIGWARISELVQTVQQLeliddedditvadlaapywerpagpvwwchmlaghpsveAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLgqsagdpfvdeddipiVLRSWQAQNFLITALHvkgpvssnnvlgiTEVQELLFvggynvprTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFvnrrnledmNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLfginvdgipgadntpyaFGLFTAILFFIGVVLIAVGLLYlglkkpiteEQVEVRKLELQELVKKFQHEAETHAQVRKNVRnnltptagdiisdadYILIQ
Flexible Loop (DISEMBL)
mmerrrsnlsddpsnsqnhnmkkpesnkkyankDVMPRCELWTDGLICAFEfiqgrkrsvtsksdsrtlsdsenskkkvpaeglgeaspesdrNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLAcrlsrwddRLFRKTIfgaadeielkfvnrrnledmNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAEthaqvrknvrnnltptagdiisdadYILIQ
Low Complexity Region (SEG)
MMERRRSNLSDDPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDSENSKKKVPAEGLGEASPESDRNKlldsllldelRGGQSFPLGDSRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Disordered region (IsUnstruct)
**********************************VMPRCELWTDGLICAFEFIQG**************************************************************************AARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQH**************NLTPTAGDIISDADYIL**
Disordered Region (DISOPRED)
***************************************ELWTDGLICAFEFI********************************************************************************EGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI************QELVKK***************************SDADYILIQ
Disordered Region (DISEMBL)
************************ESNKKYANKDVMPRCELWTDGLICAFEFIQGR************************************RNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Disordered Region (DISPRO)
*************************************RCELWTDGLICAFEFIQGR*********************************************************************QFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMERRRSNLSDDPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDSENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	560
255557421	570	conserved hypothetical protein [Ricinus	0.991	0.973	0.754	0.0
356555837	555	PREDICTED: uncharacterized protein LOC10	0.964	0.972	0.707	0.0
297845904	540	hypothetical protein ARALYDRAFT_473189 [	0.944	0.979	0.685	0.0
186479044	540	Magnesium transporter CorA-like family p	0.944	0.979	0.685	0.0
357448349	542	hypothetical protein MTR_2g028770 [Medic	0.933	0.964	0.691	0.0
359483826	570	PREDICTED: uncharacterized protein LOC10	0.989	0.971	0.695	0.0
297740638	534	unnamed protein product [Vitis vinifera]	0.928	0.973	0.703	0.0
449459338	551	PREDICTED: uncharacterized protein LOC10	0.942	0.958	0.646	0.0
224116742	470	predicted protein [Populus trichocarpa]	0.794	0.946	0.793	0.0
9972364	520	Unknown protein [Arabidopsis thaliana]	0.908	0.978	0.653	0.0

>gi|255557421|ref|XP_002519741.1| conserved hypothetical protein [Ricinus communis] gi|223541158|gb|EEF42714.1| conserved hypothetical protein [Ricinus communis]

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/574 (75%), Positives = 489/574 (85%), Gaps = 19/574 (3%)

Query: 2   MERRRSNLSDDPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQ--GRKRS 59
           ME  RS + +D S  QN+  KKPE++K + ++DV+   ELWTDGLICAFEF++  G +RS
Sbjct: 1   MEHSRSKMGEDNSFLQNNKTKKPETHKNHNSRDVISGNELWTDGLICAFEFVRVRGSRRS 60

Query: 60  VTSKSDSRTLS---DSENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDS 116
           + SKS S+T S   D E +K +V A GL E SP  DRNKLL+   L E RG Q+   GDS
Sbjct: 61  INSKSVSKTPSKQLDGEQTKYQVQATGLSE-SPRHDRNKLLEPSSLSEFRGNQNVSSGDS 119

Query: 117 RHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQ--------LELIDDEDDITVA 168
           R   + QS Q+ A  RF+ SHWVPIGWARIS+LVQTVQ         L+L+D+EDD+TVA
Sbjct: 120 R---IDQSGQYRAIERFDDSHWVPIGWARISDLVQTVQTDFSWTTQLLDLMDEEDDLTVA 176

Query: 169 DLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLY 228
           +LAAPYWERPAGP+WWCH+ A HPSV++WL+ AQWLHPA+S+ALRDESRLISERMK+LLY
Sbjct: 177 ELAAPYWERPAGPIWWCHVSANHPSVQSWLNNAQWLHPAISVALRDESRLISERMKHLLY 236

Query: 229 EVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGI 288
           EVPVRVAGGLLFELLGQSAGDPFV+EDDIPIVLRSWQAQNFLIT+LH+KG VS  NVLGI
Sbjct: 237 EVPVRVAGGLLFELLGQSAGDPFVEEDDIPIVLRSWQAQNFLITSLHIKGNVSRVNVLGI 296

Query: 289 TEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLED 348
           TEV ELL  GGYN PRTVHEVIA LACRL+RWDDRLFRK+IFGAADEIELKF+NRRN ED
Sbjct: 297 TEVLELLSGGGYNTPRTVHEVIALLACRLTRWDDRLFRKSIFGAADEIELKFMNRRNHED 356

Query: 349 MNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMI 408
           MNLF++ILNQEIRRLSRQVIRVKWSLHAREEIVFEL  HLRGN AR LLE IRK+ REM+
Sbjct: 357 MNLFSVILNQEIRRLSRQVIRVKWSLHAREEIVFELLHHLRGNAARILLEEIRKSTREMM 416

Query: 409 EEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI 468
           EEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFGINVDGI
Sbjct: 417 EEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGINVDGI 476

Query: 469 PGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHE 528
           PGA+NTPYAFG+FTAIL FIGVVLIAVGLLYLGLK+PITE++VEVRKLELQELVK FQHE
Sbjct: 477 PGAENTPYAFGVFTAILLFIGVVLIAVGLLYLGLKQPITEKRVEVRKLELQELVKMFQHE 536

Query: 529 AETHAQVRKNV-RNNLTPTAGD-IISDADYILIQ 560
           AETHAQVRKNV R NLTPT+GD +  D DY+LIQ
Sbjct: 537 AETHAQVRKNVHRTNLTPTSGDGLTDDVDYVLIQ 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555837|ref|XP_003546236.1| PREDICTED: uncharacterized protein LOC100796976 [Glycine max]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/567 (70%), Positives = 454/567 (80%), Gaps = 27/567 (4%)

Query: 9   LSDDPSNSQNHNM-KKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKS--- 64
           +SD    S +  + +K +S+K Y  +D      LW DGLICAFE+I+G+ RSV S S   
Sbjct: 1   MSDTEGKSHSSGITRKLDSHKTYHGRDPNHGNNLWKDGLICAFEYIKGQNRSVKSSSSSK 60

Query: 65  -DSRTLSDSENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQ 123
              R   + ++SK  VP++   + S  S  N   DSL             G S  ++  Q
Sbjct: 61  ITDRLHVNGQHSKMHVPSDDKKKLSDPSSVNVSRDSLF------------GGSDDDKEGQ 108

Query: 124 SSQFNAAARFEGSHWVPIGWARISELVQTVQ--------QLELIDDEDDITVADLAAPYW 175
           + +   + ++EG HWVPIGWARISELVQ VQ        QLE  D EDD TVADLAAPYW
Sbjct: 109 AHKAGQSKKYEGGHWVPIGWARISELVQAVQVDADWSSHQLEFEDSEDDFTVADLAAPYW 168

Query: 176 ERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVA 235
           E PAGP+WWCH+ AGHP+VEAWLS AQWLHPAVSLALRDESRLISERMK+LLYEVPVRVA
Sbjct: 169 EHPAGPIWWCHVFAGHPTVEAWLSNAQWLHPAVSLALRDESRLISERMKHLLYEVPVRVA 228

Query: 236 GGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELL 295
           GGLLFELLGQSAGDP V+EDDIPIVLRSWQ+QNFL+T +H+KG VS  NVLGITEVQELL
Sbjct: 229 GGLLFELLGQSAGDPLVEEDDIPIVLRSWQSQNFLVTVMHIKGSVSRINVLGITEVQELL 288

Query: 296 FVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAII 355
             GGYN+PRTVHEVIA LACRLSRWDDRLFRK+IFGAADEIELKF+NRRN ED+NLF +I
Sbjct: 289 SAGGYNMPRTVHEVIALLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFILI 348

Query: 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVR 415
           LNQEIR+LS QVIRVKWSLHAR+EIVFEL QHL+GN ARTLLEGI+K+ REMIEEQEAVR
Sbjct: 349 LNQEIRKLSTQVIRVKWSLHARDEIVFELLQHLKGNGARTLLEGIKKSTREMIEEQEAVR 408

Query: 416 GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTP 475
           GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGG GVVLT+ITGLFGINVDGIPGA+ TP
Sbjct: 409 GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIITGLFGINVDGIPGAEQTP 468

Query: 476 YAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQV 535
           YAFG+FTAIL  +GVVLIAVG++YLGLK P+ EEQVEVRKLELQELVK FQHEAETHAQ+
Sbjct: 469 YAFGVFTAILVVLGVVLIAVGMVYLGLKNPVVEEQVEVRKLELQELVKMFQHEAETHAQM 528

Query: 536 RKNVR-NNLTPTAGDII-SDADYILIQ 560
           RKN+   NL PTAGD   SDADY++IQ
Sbjct: 529 RKNISPKNLPPTAGDAFRSDADYLVIQ 555

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845904|ref|XP_002890833.1| hypothetical protein ARALYDRAFT_473189 [Arabidopsis lyrata subsp. lyrata] gi|297336675|gb|EFH67092.1| hypothetical protein ARALYDRAFT_473189 [Arabidopsis lyrata subsp. lyrata]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/554 (68%), Positives = 446/554 (80%), Gaps = 25/554 (4%)

Query: 15  NSQNHNMKKPESNKKYANKDV--MPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDS 72
           N +NH++ +   +KK  +K+   +P+ +LWTDG+ICAFEFI+G K+ V SK   +     
Sbjct: 4   NGENHSVSQESKSKKLESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLDKGYLKQ 63

Query: 73  ENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAAR 132
           E+   +    G          N  +DS  +D+LR  +S    D +   +  S       R
Sbjct: 64  EDGPIRHTFPG---------HNPFVDSSAVDDLRS-RSVSSLDFKEAHMLPSGH---VER 110

Query: 133 FEGSHWVPIGWARISELVQTVQ------QLELIDDEDDITVADLAAPYWERPAGPVWWCH 186
           +EGSHWVPIGW RI+ELVQ VQ       LEL+DDEDD+ V DLAAPYWERP GP WWCH
Sbjct: 111 YEGSHWVPIGWTRITELVQMVQVNAEWPNLELLDDEDDVPVTDLAAPYWERPGGPTWWCH 170

Query: 187 MLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQS 246
           + AG+  VE WL  A WLHPA+SLALRDES+LISERM++LLYEVPVRVAGGLLFELLGQS
Sbjct: 171 LTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVAGGLLFELLGQS 230

Query: 247 AGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTV 306
            GDP + EDD+P+V RSWQA+NFL++ +H+KG V+S NVLGITEV+ELL+ GGYNVPRTV
Sbjct: 231 VGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTSTNVLGITEVEELLYAGGYNVPRTV 290

Query: 307 HEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQ 366
           HEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+NRRN ED+NLF+IILNQEIR+LSRQ
Sbjct: 291 HEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNYEDLNLFSIILNQEIRKLSRQ 350

Query: 367 VIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQ 426
           VIRVKWSLHAREEI+FEL QHLRGN AR LLEG+RKN REM+EEQEAVRGRLFTIQDVMQ
Sbjct: 351 VIRVKWSLHAREEIIFELLQHLRGNTARHLLEGLRKNTREMLEEQEAVRGRLFTIQDVMQ 410

Query: 427 STVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 486
           S+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFGINVDGIPGA NTPYAFGLFT ++ 
Sbjct: 411 SSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFGINVDGIPGAQNTPYAFGLFTVLMV 470

Query: 487 FIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPT 546
            +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++VK FQHEAETHAQ+R   RNNL+PT
Sbjct: 471 LLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVVKIFQHEAETHAQLR---RNNLSPT 527

Query: 547 AGDIISDADYILIQ 560
           AGD+  DADYILIQ
Sbjct: 528 AGDVF-DADYILIQ 540

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186479044|ref|NP_174275.2| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|186479046|ref|NP_001117384.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193013|gb|AEE31134.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193014|gb|AEE31135.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/554 (68%), Positives = 447/554 (80%), Gaps = 25/554 (4%)

Query: 15  NSQNHNMKKPESNKKYANKDV--MPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDS 72
           N +NH++ +   +KK  +K+   +P+ +LWTDG+ICAFEFI+G K+ V SK   +     
Sbjct: 4   NGENHSVSQESKSKKLESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLEKGALKQ 63

Query: 73  ENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAAR 132
           E+        G          N  +DS  +D+LR  +S    D +   L  S       R
Sbjct: 64  EDGPISHSFPG---------HNPFVDSSPVDDLRS-RSVSSLDFKEAHLLPSGH---VER 110

Query: 133 FEGSHWVPIGWARISELVQTVQ------QLELIDDEDDITVADLAAPYWERPAGPVWWCH 186
           +EGSHWVPIGWARI+ELVQ VQ       LELIDDE+D+ V DLAAPYWERP GP WWCH
Sbjct: 111 YEGSHWVPIGWARITELVQMVQVNAEWPNLELIDDEEDVPVTDLAAPYWERPGGPTWWCH 170

Query: 187 MLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQS 246
           + AG+  VE WL  A WLHPA+SLALRDES+LISERM++LLYEVPVRVAGGLLFELLGQS
Sbjct: 171 LSAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVAGGLLFELLGQS 230

Query: 247 AGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTV 306
            GDP + EDD+P+V RSWQA+NFL++ +H+KG V++ NVLGITEV+ELL+ GGYNVPRTV
Sbjct: 231 VGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTNTNVLGITEVEELLYAGGYNVPRTV 290

Query: 307 HEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQ 366
           HEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+NRRN ED+NLF+IILNQEIR+LSRQ
Sbjct: 291 HEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNYEDLNLFSIILNQEIRKLSRQ 350

Query: 367 VIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQ 426
           VIRVKWSLHAREEI+FEL QHLRGN+AR LL+G+RKN REM+EEQEAVRGRLFTIQDVMQ
Sbjct: 351 VIRVKWSLHAREEIIFELLQHLRGNIARHLLDGLRKNTREMLEEQEAVRGRLFTIQDVMQ 410

Query: 427 STVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 486
           S+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFGINVDGIPGA NTPYAFGLFT ++ 
Sbjct: 411 SSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFGINVDGIPGAQNTPYAFGLFTFLMV 470

Query: 487 FIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPT 546
            +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++VK FQHEAETHAQ+R   RNNL+PT
Sbjct: 471 LLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVVKIFQHEAETHAQLR---RNNLSPT 527

Query: 547 AGDIISDADYILIQ 560
           AGD+  DADYILIQ
Sbjct: 528 AGDVF-DADYILIQ 540

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448349|ref|XP_003594450.1| hypothetical protein MTR_2g028770 [Medicago truncatula] gi|355483498|gb|AES64701.1| hypothetical protein MTR_2g028770 [Medicago truncatula]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/567 (69%), Positives = 435/567 (76%), Gaps = 44/567 (7%)

Query: 10  SDDPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDS--- 66
           ++D S+S + N  +PES K +  +D+    +LWTDGLICAFEF++G+KR V SKS S   
Sbjct: 4   AEDQSHS-SRNKWQPESYKNHPARDLNSGSDLWTDGLICAFEFVRGKKRPVKSKSSSNIT 62

Query: 67  -RTLSDSENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSS 125
            R   D   SK  VP+ G+           + D                D +   + Q  
Sbjct: 63  NRPHFDGRYSKMHVPSNGV-----------IFD----------------DDKEVPIFQVG 95

Query: 126 QFNAAARFEGSHWVPIGWARISELVQTVQ--------QLELIDDEDDITVADLAAPYWER 177
           Q ++     G HWVPIGW+RISELVQ VQ        Q E  D EDD T ADLAAPYWER
Sbjct: 96  QSHSPEEHGGDHWVPIGWSRISELVQAVQVDAVWSSHQFEFDDSEDDFTAADLAAPYWER 155

Query: 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGG 237
           PAGP WWCH+ AGHP+VEAWLS AQWLHPAV LALRDES+LISERMK+LLYEVPVRVAGG
Sbjct: 156 PAGPRWWCHVSAGHPAVEAWLSNAQWLHPAVGLALRDESKLISERMKHLLYEVPVRVAGG 215

Query: 238 LLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQ---EL 294
           LLFELLGQS GDP VDEDDIPIVLRSWQAQNFL+T +H+KGPVS  NVLGITEVQ   EL
Sbjct: 216 LLFELLGQSVGDPHVDEDDIPIVLRSWQAQNFLVTVIHIKGPVSKINVLGITEVQVVLEL 275

Query: 295 LFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAI 354
           L  GGYNVPRT HEVIA LA RLSRWDDRLFRK+IFG ADEIELKF+NRR  ED+N F I
Sbjct: 276 LSTGGYNVPRTAHEVIAQLASRLSRWDDRLFRKSIFGTADEIELKFMNRRTHEDLNFFNI 335

Query: 355 ILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAV 414
           ILNQEIR+LS QVIRVKWSLHAR+EIVFEL QHL+GN AR LLEGI+K+ REMIEEQEAV
Sbjct: 336 ILNQEIRKLSAQVIRVKWSLHARDEIVFELLQHLKGNGARNLLEGIKKSTREMIEEQEAV 395

Query: 415 RGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNT 474
           RGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGG GVVLT+ITGLFGINVDGIPGA NT
Sbjct: 396 RGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIITGLFGINVDGIPGATNT 455

Query: 475 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQ 534
           PYAFG+FTAIL F+G VLI V L+YLGLK PI EEQVEVRKLEL E VK FQH+AE HAQ
Sbjct: 456 PYAFGVFTAILIFLGAVLIVVCLVYLGLKTPIAEEQVEVRKLELDEFVKMFQHDAENHAQ 515

Query: 535 VRKNV-RNNLTPTAGDIISDADYILIQ 560
           VRKNV RNNL PTAGD     D+++IQ
Sbjct: 516 VRKNVSRNNLPPTAGDAYRRGDFLVIQ 542

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483826|ref|XP_002272002.2| PREDICTED: uncharacterized protein LOC100267497 [Vitis vinifera]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/569 (69%), Positives = 453/569 (79%), Gaps = 15/569 (2%)

Query: 7   SNLSDDPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDS 66
           S +++  S+  ++ MK PE+      +D  P  +LWTDGLICAFE++   +R   SK  S
Sbjct: 2   SGMNEVQSSPMSNKMKNPENQTNSNGRDATPGSDLWTDGLICAFEYVTSHRRISRSKYGS 61

Query: 67  RTLS----DSENSKKKVPAEGLGEASPES-DRNKLLDSLLLDELRGGQSFPLGDSRHNRL 121
           +  S    + EN KK+VP   +  AS ++  R    +S  L EL       L +   ++ 
Sbjct: 62  KIQSVQQIEGENMKKQVPENKVSRASAQNLIRKHRSESASLVELGPDHVASLDNHIDHQF 121

Query: 122 SQSSQFNAAARFEGSHWVPIGWARISELVQTV--------QQLELIDDEDDITVADLAAP 173
            QS +++   R  GSHWVPIGWARISELVQTV        QQ E+ DDED+ + ADLAAP
Sbjct: 122 YQSDRYHMTERSSGSHWVPIGWARISELVQTVRVDAGWALQQFEVTDDEDERSAADLAAP 181

Query: 174 YWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVR 233
           YWE+PAGPVWWCH+ AGH  ++ WLS AQWLHPA+  ALRDESRLISERMKYLLYEVPVR
Sbjct: 182 YWEQPAGPVWWCHVAAGHRFIDTWLSNAQWLHPAIRTALRDESRLISERMKYLLYEVPVR 241

Query: 234 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQE 293
           VAGGLLFELLGQSAGDPF DEDDIPIVLRSW AQ FLITALH+KG  SS NVLGITEVQE
Sbjct: 242 VAGGLLFELLGQSAGDPFHDEDDIPIVLRSWHAQRFLITALHIKGTASSINVLGITEVQE 301

Query: 294 LLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFA 353
            L  GGYN P+TVH++IA L  RLSRWDDRLFRK+IFGAADE+ELKF+NRR+ EDMNL +
Sbjct: 302 ALSAGGYNQPKTVHDIIALLMTRLSRWDDRLFRKSIFGAADEVELKFMNRRHQEDMNLLS 361

Query: 354 IILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEA 413
           II NQEIRRLSRQVIRVKWSLHAREEIVFEL QHLRG+VAR+LLEGIRKN REMIEEQEA
Sbjct: 362 IIFNQEIRRLSRQVIRVKWSLHAREEIVFELLQHLRGDVARSLLEGIRKNTREMIEEQEA 421

Query: 414 VRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADN 473
           VRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFGINVDGIPGA  
Sbjct: 422 VRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGINVDGIPGASG 481

Query: 474 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHA 533
           TPYAFGLF AIL  IG++LIA+GLLYLGLKKP++E QV+VRKLELQ+LVK FQHEAETHA
Sbjct: 482 TPYAFGLFAAILVLIGIILIALGLLYLGLKKPVSEAQVQVRKLELQQLVKMFQHEAETHA 541

Query: 534 QVRKN-VRNNLTPTAGDII-SDADYILIQ 560
           QV K+  RNNLTPTA DII +DADY+LIQ
Sbjct: 542 QVSKSRPRNNLTPTAADIIPADADYVLIQ 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740638|emb|CBI30820.3| unnamed protein product [Vitis vinifera]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/554 (70%), Positives = 437/554 (78%), Gaps = 34/554 (6%)

Query: 21  MKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLS----DSENSK 76
           MK PE+      +D  P  +LWTDGLICAFE++   +R   SK  S+  S    + EN K
Sbjct: 1   MKNPENQTNSNGRDATPGSDLWTDGLICAFEYVTSHRRISRSKYGSKIQSVQQIEGENMK 60

Query: 77  KKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAARFEGS 136
           K+VP   +  AS ++   K                     R    S S +++   R  GS
Sbjct: 61  KQVPENKVSRASAQNLIRK--------------------HRSESASLSDRYHMTERSSGS 100

Query: 137 HWVPIGWARISELVQTV--------QQLELIDDEDDITVADLAAPYWERPAGPVWWCHML 188
           HWVPIGWARISELVQTV        QQ E+ DDED+ + ADLAAPYWE+PAGPVWWCH+ 
Sbjct: 101 HWVPIGWARISELVQTVRVDAGWALQQFEVTDDEDERSAADLAAPYWEQPAGPVWWCHVA 160

Query: 189 AGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAG 248
           AGH  ++ WLS AQWLHPA+  ALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAG
Sbjct: 161 AGHRFIDTWLSNAQWLHPAIRTALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAG 220

Query: 249 DPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHE 308
           DPF DEDDIPIVLRSW AQ FLITALH+KG  SS NVLGITEVQE L  GGYN P+TVH+
Sbjct: 221 DPFHDEDDIPIVLRSWHAQRFLITALHIKGTASSINVLGITEVQEALSAGGYNQPKTVHD 280

Query: 309 VIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVI 368
           +IA L  RLSRWDDRLFRK+IFGAADE+ELKF+NRR+ EDMNL +II NQEIRRLSRQVI
Sbjct: 281 IIALLMTRLSRWDDRLFRKSIFGAADEVELKFMNRRHQEDMNLLSIIFNQEIRRLSRQVI 340

Query: 369 RVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQST 428
           RVKWSLHAREEIVFEL QHLRG+VAR+LLEGIRKN REMIEEQEAVRGRLFTIQDVMQST
Sbjct: 341 RVKWSLHAREEIVFELLQHLRGDVARSLLEGIRKNTREMIEEQEAVRGRLFTIQDVMQST 400

Query: 429 VRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFI 488
           VRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFGINVDGIPGA  TPYAFGLF AIL  I
Sbjct: 401 VRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGINVDGIPGASGTPYAFGLFAAILVLI 460

Query: 489 GVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKN-VRNNLTPTA 547
           G++LIA+GLLYLGLKKP++E QV+VRKLELQ+LVK FQHEAETHAQV K+  RNNLTPTA
Sbjct: 461 GIILIALGLLYLGLKKPVSEAQVQVRKLELQQLVKMFQHEAETHAQVSKSRPRNNLTPTA 520

Query: 548 GDII-SDADYILIQ 560
            DII +DADY+LIQ
Sbjct: 521 ADIIPADADYVLIQ 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459338|ref|XP_004147403.1| PREDICTED: uncharacterized protein LOC101208256 [Cucumis sativus] gi|449516982|ref|XP_004165525.1| PREDICTED: uncharacterized LOC101208256 [Cucumis sativus]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/560 (64%), Positives = 440/560 (78%), Gaps = 32/560 (5%)

Query: 15  NSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDSEN 74
           +   ++++KPE++K + NKD  P  +LWTDGLICAFE+I G+ R  T       +SD   
Sbjct: 6   SPHRNSVEKPEAHKPF-NKDATPGYDLWTDGLICAFEYI-GKPRKSTDSKSKSKMSDRWQ 63

Query: 75  SKKKVPAEGL----GEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAA 130
           +  + P        G A+   +R +  +    ++LR               +   QF+  
Sbjct: 64  TNSEFPTTTTELNSGNANTH-ERKRSFEPTSPEDLR---------------THCGQFSER 107

Query: 131 ARFEGSHWVPIGWARISELVQTVQ--------QLELIDDEDDITVADLAAPYWERPAGPV 182
            + E + W+PIGW RISELVQT+Q          + +D+EDD+TVADL APYW+RPAGP+
Sbjct: 108 EKVESNSWLPIGWDRISELVQTIQVEAEWASMSYDFMDEEDDLTVADLVAPYWKRPAGPI 167

Query: 183 WWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFEL 242
           WWCH+ A HPSVEAWL  A WLHPA+SLALRDESRLIS+RMK+L YEVPVRVAGGLLFEL
Sbjct: 168 WWCHVSASHPSVEAWLRTAHWLHPAISLALRDESRLISDRMKHLFYEVPVRVAGGLLFEL 227

Query: 243 LGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV 302
           LGQSAGDPF DEDDIP+VLRSWQAQNFLIT+LHVKGP+S+ N+LGITEVQELL +GGYN 
Sbjct: 228 LGQSAGDPFSDEDDIPVVLRSWQAQNFLITSLHVKGPISNPNILGITEVQELLIIGGYNA 287

Query: 303 PRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRR 362
           PRTVHEVIAHLACRL+RWDDRLFRK+IFGAADEIELKF++RRN EDM+LF+IILNQEIR+
Sbjct: 288 PRTVHEVIAHLACRLTRWDDRLFRKSIFGAADEIELKFMDRRNHEDMHLFSIILNQEIRK 347

Query: 363 LSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQ 422
           LSRQVIRVKWSLHAREEI++EL QHLRG V + LLE IRK+ R+MIEEQEAVR RLFTIQ
Sbjct: 348 LSRQVIRVKWSLHAREEILYELLQHLRGYVTKGLLESIRKSTRQMIEEQEAVRDRLFTIQ 407

Query: 423 DVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFT 482
           DVMQS VRAWLQD+SLRVTHNLAVFGGCG+VL++ITGLFGINVDGIPGA NTPYAFG+FT
Sbjct: 408 DVMQSNVRAWLQDKSLRVTHNLAVFGGCGLVLSIITGLFGINVDGIPGAQNTPYAFGMFT 467

Query: 483 AILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRK--NVR 540
           AILFF+G+ L+A GL+YLGLKKP+ ++ VEVRKLEL+ELVK FQHEAETHAQ+    N +
Sbjct: 468 AILFFLGIALMAGGLVYLGLKKPMPDQMVEVRKLELEELVKMFQHEAETHAQMTSPVNGK 527

Query: 541 NNLTPTAGDIISDADYILIQ 560
           +      G  +S++++++I+
Sbjct: 528 DGAQLVDGGRLSNSNFLIIR 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116742|ref|XP_002331866.1| predicted protein [Populus trichocarpa] gi|222875384|gb|EEF12515.1| predicted protein [Populus trichocarpa]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/459 (79%), Positives = 396/459 (86%), Gaps = 14/459 (3%)

Query: 112 PLGDSRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQ--------QLELIDDED 163
           PL   R  ++  S Q     R E   W+PIGWARIS+LVQTVQ        Q+ L DDE 
Sbjct: 16  PLNSLRGKKILPSRQ----DRHEDGRWIPIGWARISQLVQTVQIDGDWPTQQVGLPDDEL 71

Query: 164 DITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERM 223
             TVADLAAPYWERPAGP WWCH+ A H SV+AWL+ A+WLHPA+SLALRDESRLISERM
Sbjct: 72  GPTVADLAAPYWERPAGPTWWCHVAASHTSVQAWLNNAKWLHPAISLALRDESRLISERM 131

Query: 224 KYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSN 283
           K+LLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP+VLRSW AQNFLITALH+KG VS  
Sbjct: 132 KHLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPVVLRSWHAQNFLITALHIKGHVSRV 191

Query: 284 NVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNR 343
           NVLGITEVQELLF+GG N P+TVHEVIA LA R+SRWDDRLFRK+IFG ADEIELKFVNR
Sbjct: 192 NVLGITEVQELLFLGGCNGPKTVHEVIAQLASRMSRWDDRLFRKSIFGEADEIELKFVNR 251

Query: 344 RNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKN 403
           RN EDM+LF+IILNQEIRRLSRQVIRVKWSLHAREEIVFEL  HLRGN AR LLE IRK+
Sbjct: 252 RNYEDMSLFSIILNQEIRRLSRQVIRVKWSLHAREEIVFELLHHLRGNAARMLLEEIRKS 311

Query: 404 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGI 463
            R+MIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFGI
Sbjct: 312 TRQMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGI 371

Query: 464 NVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVK 523
           NVDG+PGA  TPYAF LFT IL F+G+VLIAVGLLYLGLKKP+TEEQV+V+KLELQELVK
Sbjct: 372 NVDGMPGASGTPYAFALFTGILLFVGLVLIAVGLLYLGLKKPVTEEQVQVKKLELQELVK 431

Query: 524 KFQHEAETHAQVRKNV-RNNLTPTAGDIIS-DADYILIQ 560
            FQHEAETHAQVRK V RNNL PT+GDI S D DY+LIQ
Sbjct: 432 MFQHEAETHAQVRKTVRRNNLPPTSGDIFSDDVDYVLIQ 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9972364|gb|AAG10614.1|AC008030_14 Unknown protein [Arabidopsis thaliana]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/554 (65%), Positives = 427/554 (77%), Gaps = 45/554 (8%)

Query: 15  NSQNHNMKKPESNKKYANKDV--MPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDS 72
           N +NH++ +   +KK  +K+   +P+ +LWTDG+ICAFEFI+G K+ V SK   +     
Sbjct: 4   NGENHSVSQESKSKKLESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLEKGALKQ 63

Query: 73  ENSKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSFPLGDSRHNRLSQSSQFNAAAR 132
           E+        G          N  +DS  +D+LR  +S    D +   L  S       R
Sbjct: 64  EDGPISHSFPG---------HNPFVDSSPVDDLRS-RSVSSLDFKEAHLLPSGH---VER 110

Query: 133 FEGSHWVPIGWARISELVQTVQ------QLELIDDEDDITVADLAAPYWERPAGPVWWCH 186
           +EGSHWVPIGWARI+ELVQ VQ       LELIDDE+D+ V DLAAPYWERP GP WWCH
Sbjct: 111 YEGSHWVPIGWARITELVQMVQVNAEWPNLELIDDEEDVPVTDLAAPYWERPGGPTWWCH 170

Query: 187 MLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQS 246
           + AG+  VE WL  A WLHPA+SLALRDES+LISERM++LLYEVPVRVAGGLLFELLGQS
Sbjct: 171 LTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVAGGLLFELLGQS 230

Query: 247 AGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTV 306
            GDP + EDD+P+V RSWQA+NFL++ +H+KG V++ NVLGITEV+ELL+ GGYNVPRTV
Sbjct: 231 VGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTNTNVLGITEVEELLYAGGYNVPRTV 290

Query: 307 HEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQ 366
           HEVIAHLACRLSRWDDR                    RN ED+NLF+IILNQEIR+LSRQ
Sbjct: 291 HEVIAHLACRLSRWDDR--------------------RNYEDLNLFSIILNQEIRKLSRQ 330

Query: 367 VIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQ 426
           VIRVKWSLHAREEI+FEL QHLRGN+AR LL+G+RKN REM+EEQEAVRGRLFTIQDVMQ
Sbjct: 331 VIRVKWSLHAREEIIFELLQHLRGNIARHLLDGLRKNTREMLEEQEAVRGRLFTIQDVMQ 390

Query: 427 STVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 486
           S+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFGINVDGIPGA NTPYAFGLFT ++ 
Sbjct: 391 SSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFGINVDGIPGAQNTPYAFGLFTFLMV 450

Query: 487 FIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPT 546
            +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++VK FQHEAETHAQ+R   RNNL+PT
Sbjct: 451 LLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVVKIFQHEAETHAQLR---RNNLSPT 507

Query: 547 AGDIISDADYILIQ 560
           AGD+  DADYILIQ
Sbjct: 508 AGDVF-DADYILIQ 520

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	560
TAIR|locus:2019292	540	AT1G29820 [Arabidopsis thalian	0.944	0.979	0.680	1.4e-199
TAIR|locus:2019282	568	AT1G29830 [Arabidopsis thalian	0.935	0.922	0.631	9.7e-183
TAIR|locus:2045575	501	AT2G42950 [Arabidopsis thalian	0.758	0.848	0.704	5.5e-169
TIGR_CMR|SPO_A0218	322	SPO_A0218 "magnesium transport	0.25	0.434	0.304	5.1e-07
TIGR_CMR|SO_3984	321	SO_3984 "magnesium transporter	0.244	0.426	0.285	0.00056

TAIR|locus:2019292 AT1G29820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1932 (685.2 bits), Expect = 1.4e-199, P = 1.4e-199
 Identities = 377/554 (68%), Positives = 443/554 (79%)

Query:    15 NSQNHNMKKPESNKKYANKDV--MPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSDS 72
             N +NH++ +   +KK  +K+   +P+ +LWTDG+ICAFEFI+G K+ V    DS+ L   
Sbjct:     4 NGENHSVSQESKSKKLESKNHSGVPKSDLWTDGIICAFEFIRGPKKHV----DSKQLEKG 59

Query:    73 ENSKKKVPAEGLGEASPESDRNKXXXXXXXXXXRGGQSFPLGDSRHNRLSQSSQFNAAAR 132
                ++  P   +  + P    N           R      L D +   L  S       R
Sbjct:    60 ALKQEDGP---ISHSFP--GHNPFVDSSPVDDLRSRSVSSL-DFKEAHLLPSGHVE---R 110

Query:   133 FEGSHWVPIGWARISELVQTVQ------QLELIDDEDDITVADLAAPYWERPAGPVWWCH 186
             +EGSHWVPIGWARI+ELVQ VQ       LELIDDE+D+ V DLAAPYWERP GP WWCH
Sbjct:   111 YEGSHWVPIGWARITELVQMVQVNAEWPNLELIDDEEDVPVTDLAAPYWERPGGPTWWCH 170

Query:   187 MLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQS 246
             + AG+  VE WL  A WLHPA+SLALRDES+LISERM++LLYEVPVRVAGGLLFELLGQS
Sbjct:   171 LSAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVAGGLLFELLGQS 230

Query:   247 AGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTV 306
              GDP + EDD+P+V RSWQA+NFL++ +H+KG V++ NVLGITEV+ELL+ GGYNVPRTV
Sbjct:   231 VGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTNTNVLGITEVEELLYAGGYNVPRTV 290

Query:   307 HEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQ 366
             HEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+NRRN ED+NLF+IILNQEIR+LSRQ
Sbjct:   291 HEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNYEDLNLFSIILNQEIRKLSRQ 350

Query:   367 VIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQ 426
             VIRVKWSLHAREEI+FEL QHLRGN+AR LL+G+RKN REM+EEQEAVRGRLFTIQDVMQ
Sbjct:   351 VIRVKWSLHAREEIIFELLQHLRGNIARHLLDGLRKNTREMLEEQEAVRGRLFTIQDVMQ 410

Query:   427 STVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 486
             S+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFGINVDGIPGA NTPYAFGLFT ++ 
Sbjct:   411 SSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFGINVDGIPGAQNTPYAFGLFTFLMV 470

Query:   487 FIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPT 546
              +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++VK FQHEAETHAQ+R   RNNL+PT
Sbjct:   471 LLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVVKIFQHEAETHAQLR---RNNLSPT 527

Query:   547 AGDIISDADYILIQ 560
             AGD+  DADYILIQ
Sbjct:   528 AGDVF-DADYILIQ 540

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2019282 AT1G29830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
 Identities = 352/557 (63%), Positives = 417/557 (74%)

Query:    12 DPSNSQNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEFIQGRKRSVTSKSDSRTLSD 71
             DP+ + NH  +  ES     N   +P+ +LWTDG+ICAFEFI+G K+ V SK   +    
Sbjct:    37 DPAITTNHVSQ--ESK----NHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLYKGYLK 90

Query:    72 SENS--KKKVPAEGLGEASPESDRNKXXXXXXXXXXRGGQSFPLGDSRHNRLSQSSQFNA 129
              E+   +   P       SP  D  +          +     P G   H           
Sbjct:    91 QEDGPIRHSFPGHNPFIDSPAVDYLRSRSVSSLDF-KEAHVLPSG---H----------- 135

Query:   130 AARFEGSHWVPIGWARISELVQTVQ------QLELIDDEDDITVADLAAPYWERPAGPVW 183
               R EGSHWVPIGW RI++LVQ VQ       L+LIDDE+D+ V DLAAPYWERP GP W
Sbjct:   136 VERSEGSHWVPIGWTRITKLVQQVQVNAEWPNLKLIDDEEDVPVTDLAAPYWERPGGPTW 195

Query:   184 WCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELL 243
             WCH+ AG+  VE WL  A WLHPA+SLALRDES+LISERM++LLYEVPVRV GGLLFELL
Sbjct:   196 WCHLTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVDGGLLFELL 255

Query:   244 GQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVP 303
             GQS GDP + EDD+P+V RSWQA+NFL++ +H+KG VS +NVLGITEV+ELL+ G YNVP
Sbjct:   256 GQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSKSNVLGITEVEELLYAGSYNVP 315

Query:   304 RTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRL 363
             RT+HEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+NRRN ED+NLF+IILNQEIR+L
Sbjct:   316 RTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFSIILNQEIRKL 375

Query:   364 SRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQD 423
             +RQ IRVKWSLHAREEI+ EL QHLRGN+ R LLEG+R N REM+EEQEAVRGRLFTIQD
Sbjct:   376 ARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRNNTREMLEEQEAVRGRLFTIQD 435

Query:   424 VMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTA 483
              +QS +R+WLQD+SL  +HNLA+FGGCG+VLT+I GLF +N+DG+PG  +TPYAF LF+ 
Sbjct:   436 NIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFSVNLDGVPGVKHTPYAFVLFSV 495

Query:   484 ILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNL 543
              L  IG+VLIA GL YLG KKPITEE VE RKLELQ +VK FQHEAETHAQ+R   RNNL
Sbjct:   496 FLVLIGIVLIAFGLRYLGPKKPITEEHVEARKLELQNVVKIFQHEAETHAQLR---RNNL 552

Query:   544 TPTAGDIISDADYILIQ 560
             +PTAGD+  DADY LIQ
Sbjct:   553 SPTAGDVF-DADYFLIQ 568

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2045575 AT2G42950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1574 (559.1 bits), Expect = 5.5e-169, Sum P(2) = 5.5e-169
 Identities = 307/436 (70%), Positives = 356/436 (81%)

Query:   136 SHWVPIGWARISELVQTVQ-----QLELID-DEDDITVADLAAPYWERP-AGPVWWCHML 188
             S+W  IGW RISELVQTVQ      L  ID DED+ TVA+LAAPYWERP AGP WWCH+ 
Sbjct:    66 SYWRGIGWDRISELVQTVQVDNNWDLRKIDLDEDEATVAELAAPYWERPLAGPTWWCHLD 125

Query:   189 AGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAG 248
             A H  + +WL  A WLHPAVSLALRDES+LISERMK++ YEVPVRVAGGLLFELLGQSAG
Sbjct:   126 ATHHGIASWLRNAHWLHPAVSLALRDESKLISERMKHIFYEVPVRVAGGLLFELLGQSAG 185

Query:   249 DPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHE 308
             DPF+ EDDIPIVLRSWQAQNFL+TALHVKG   + +VLGITEVQE+L  GG  +PRTVHE
Sbjct:   186 DPFIQEDDIPIVLRSWQAQNFLVTALHVKGFALNISVLGITEVQEMLIAGGACIPRTVHE 245

Query:   309 VIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVI 368
             +IAHLACRL+RWDDRLFRK IFGAADE+EL F+N+R  ED NLF  ILNQEIRRLS QVI
Sbjct:   246 LIAHLACRLARWDDRLFRKYIFGAADEVELMFMNKRLYEDPNLFTTILNQEIRRLSTQVI 305

Query:   369 RVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQST 428
             RVKWSLHAREEIVFEL Q L+GN  + LLEGI+K+ R+MI EQEAVRGRLFTIQDVMQ+T
Sbjct:   306 RVKWSLHAREEIVFELLQQLKGNRTKDLLEGIKKSTRDMINEQEAVRGRLFTIQDVMQNT 365

Query:   429 VRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFI 488
             VRAWLQD+SL VTHNL +FGG G+++T++TGLFGINVDGIPGA + P AF LF+ +LF  
Sbjct:   366 VRAWLQDQSLTVTHNLGIFGGVGLLITIVTGLFGINVDGIPGAKDFPQAFALFSVVLFVS 425

Query:   489 GVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAG 548
             G+VL+  GL+YLGLK+P+ EE VE RKLEL E+VKKFQ EAE+HAQV K V  N+  T  
Sbjct:   426 GLVLVVAGLIYLGLKEPVAEENVETRKLELDEMVKKFQQEAESHAQVCKKVPQNIERTTS 485

Query:   549 D---IISDAD-YILIQ 560
                 I+ D + Y+L++
Sbjct:   486 RSRMIVHDPNGYVLLE 501

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|SPO_A0218 SPO_A0218 "magnesium transporter, CorA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 136 (52.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 46/151 (30%), Positives = 72/151 (47%)

Query:   356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRG---NVARTLLEGIRKNAREMIEEQE 412
             ++  +  L   VI+++  LH + E +  L ++  G   +    LL       R  IEE +
Sbjct:   178 MHDRLSALRLTVIKLRRYLHPQREALDALLRNEAGLFDSAGLVLLREAVDRTRRTIEELD 237

Query:   413 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 472
             A R RL  +QD + S     L   S  ++   AVF    + L  +TGLFG+N+ G+PG  
Sbjct:   238 ATRDRLAAVQDQIASEQVRLLGRNSFVLSVVAAVF----LPLGFLTGLFGVNIAGMPGT- 292

Query:   473 NTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 503
              TP AF L       +G+ ++   LL+  LK
Sbjct:   293 GTPLAFWLLAGASALLGLAIV---LLFRLLK 320

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

TIGR_CMR|SO_3984 SO_3984 "magnesium transporter, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
 Identities = 42/147 (28%), Positives = 70/147 (47%)

Query:   356 LNQEIRRLSRQVIRVKWSLHAREEIVFELY--QHLRGNVARTL-LEGIRKNAREMIEEQE 412
             L  +I  L RQ + ++  L  ++E   ++   Q +  N    L +     N    IE+ +
Sbjct:   177 LRTDIAELRRQTVALRRYLGPQKEAFAKMLSEQFVLFNEPEKLKMRETTNNLIRTIEDLD 236

Query:   413 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 472
             A+R R    Q+ + S     L  R   ++    +F    + L  +TGL G+N+ GIPGAD
Sbjct:   237 ALRDRANVTQEELLSQQSEQLNKRLYFLSLVSVIF----LPLGFLTGLLGVNIGGIPGAD 292

Query:   473 NTPYAFGLFTAILFFIGVVLIAVGLLY 499
             N  +AF  F  IL  + +V + + +LY
Sbjct:   293 NN-FAFTSFCIIL--VSLVALQMVILY 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      560       550   0.00097  119 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  316 KB (2160 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  46.59u 0.11s 46.70t   Elapsed:  00:00:02
  Total cpu time:  46.59u 0.11s 46.70t   Elapsed:  00:00:02
  Start:  Fri May 10 05:32:01 2013   End:  Fri May 10 05:32:03 2013

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__3143__AT1G29820.2 annotation not avaliable (540 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	560
cd12833	290	cd12833, ZntB-like_1, Salmonella typhimurium Zn2+	2e-19
pfam01544	291	pfam01544, CorA, CorA-like Mg2+ transporter protei	4e-12
COG0598	322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	2e-09
cd12824	290	cd12824, ZntB-like, Salmonella typhimurium Zn2+ tr	9e-06
cd12827	289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	1e-04
cd12823	323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	2e-04
PRK09546	324	PRK09546, zntB, zinc transporter; Reviewed	2e-04
cd12822	289	cd12822, TmCorA-like, Thermotoga maritima CorA-lik	2e-04
cd12821	285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	6e-04
cd12834	290	cd12834, ZntB_u1, Uncharacterized bacterial subgro	0.001

>gnl|CDD|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter ZntB-like subgroup

 Score = 88.3 bits (220), Expect = 2e-19
 Identities = 88/331 (26%), Positives = 136/331 (41%), Gaps = 70/331 (21%)

Query: 184 WCHMLAGHPSVEAWLSGAQWLHPAVSLAL-RDESRLISERMKYLLYEVP--VRVAGGLLF 240
           W H+    P  + WL  +  L   V  AL  +E+R             P   R+  GLL 
Sbjct: 4   WLHLDYSDPEAQDWLEQSSGLPELVIDALLAEETR-------------PRATRLGDGLLL 50

Query: 241 ELLG---QSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFV 297
            L G       DP   ED + I  R W     +I+            +L + +++E L  
Sbjct: 51  NLRGVNLNPGADP---EDMVSI--RLWITPGRIIS-------TRRRRLLAVDDIREALEA 98

Query: 298 GGYNVPRTVHEVIAHLACRL-SRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNL--FAI 354
           G    P++  + +A LA RL  R +D      I    D ++        LE+  L     
Sbjct: 99  G--KGPKSPGDFLAALAERLTDRMED-----VIDELEDRLD-------ELEERVLEEEDE 144

Query: 355 ILNQEIRRLSRQVIRVKWSLH---------AREEIV-FELYQHLRGNVARTLLEGIRKNA 404
            L  E+  L RQ I ++  L          ARE++        LR      L E   +  
Sbjct: 145 ELRGELAELRRQAIALRRYLAPQRDALERLAREDLPWLSDDDRLR------LREAADRLT 198

Query: 405 REMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGIN 464
           R  IE+ +A+R R   +Q+ + +     +  R   ++   A+F    + L  +TGL GIN
Sbjct: 199 R-YIEDLDAIRERAAVLQEELTNRRAEQMNRRMYVLSIVAAIF----LPLGFLTGLLGIN 253

Query: 465 VDGIPGADNTPYAFGLFTAILFFIGVVLIAV 495
           V GIPGA+N P+AF +F  +L  + V L+ +
Sbjct: 254 VGGIPGAEN-PWAFWIFCGLLVVLAVGLLLL 283

A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 32/262 (12%)

Query: 249 DPFVDEDDIPIVLRS---WQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRT 305
           D  +D+D+    L     +   N LIT       V    +  + E+++ L   G   P++
Sbjct: 56  DVNLDKDEEEEDLVPLSIFLGDNRLIT-------VRREPLPAVDEIRKRLENLGLG-PKS 107

Query: 306 VHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSR 365
             +++  L   +      +  K +    DE+E +  +    E +        +E+ RL R
Sbjct: 108 PGDLLYLLLDSIVDRYFEILEK-LEEELDELEDELEDSTTNELL--------RELLRLRR 158

Query: 366 QVIRVKWSLHAREEIVFELYQHLRGNV---ARTLLEGIRKNAREMIEEQEAVRGRLFTIQ 422
            ++R++ SL    E++  L       +    +  L  +      ++E  E +R RL ++Q
Sbjct: 159 SLVRLRRSLAPLREVLNRLLSDDGPLIDEEEKEYLRDLLDELERLLEMAEILRERLRSLQ 218

Query: 423 DVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFT 482
           D   S + +   +R ++V   L V     + LT+ITG++G+N  G+P  D   + +G   
Sbjct: 219 DAYLSLL-SNRLNRIMKV---LTVVSAIFLPLTLITGIYGMNFKGMPELD---WPYGYPF 271

Query: 483 AILFFIGVVLIAVGLLYLGLKK 504
            I   +G++L+   LL L  ++
Sbjct: 272 WI--VLGLMLLLAILLILYFRR 291

The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell. Length = 291

>gnl|CDD|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 66/337 (19%), Positives = 118/337 (35%), Gaps = 63/337 (18%)

Query: 175 WERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRV 234
              P     W  ++        WL+    LHP     L D      +R K   Y+     
Sbjct: 26  LLLPEDGFVWIDLVEPDDEELEWLAKTFGLHPLALEDLLD----AEQRPKVERYD----- 76

Query: 235 AGGLLFELLGQSAGDPFVDEDDIP------IVLRSWQAQNFLITALHVKGPVSSNNVLGI 288
              L   L          +E+D        I++     +  LIT  H   P        +
Sbjct: 77  -DYLFIVLRD----VNLEEEEDKAETEPVSIIVG----KRRLITIRHRPLPAFDRVRERL 127

Query: 289 TEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLED 348
            +   L         R   E++  L   +    D  F        ++IE +      +ED
Sbjct: 128 EKGTLL--------TRGADELLYALLDAIV---DNYFP-----VLEQIEDE---LEAIED 168

Query: 349 MNLFAIILNQEIRR---LSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAR 405
             L A   N+E+ R   L R ++ ++ +L    +++      L       L E  R+  R
Sbjct: 169 -QLLASTTNEELERLGELRRSLVYLRRALAPLRDVL----LRLARRPLDWLSEEDREYLR 223

Query: 406 E-------MIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVIT 458
           +       +IE  EA+R RL ++ D   S +     +    +   L +     +  T+IT
Sbjct: 224 DVLDHLTQLIEMLEALRERLSSLLDAYLSLI----NNNQNEIMKILTIVSTIFLPPTLIT 279

Query: 459 GLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAV 495
           G +G+N  G+P   + PY + +   ++  + ++L   
Sbjct: 280 GFYGMNFKGMPEL-DWPYGYPIALILMLLLALLLYLY 315

Length = 322

>gnl|CDD|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter ZntB-like subfamily

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 363 LSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREM---IEEQEAVRGRLF 419
           L R++ R++  +  +++ +  L       +  +  E +R+ +  +   +E  +  R R+ 
Sbjct: 153 LQRRLFRIRRQIRPQQQALRPLITDPAELLVTSDRETLRRASNNVTRYLETLDFCRTRVA 212

Query: 420 TIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFG 479
            +QD     ++A   +++ R +  L V     + LT ITGL G+NV GIP  ++ P  F 
Sbjct: 213 LLQD----EIKAQRDEKTTRSSLLLTVVATVFLPLTFITGLLGMNVGGIPDVES-PMGF- 266

Query: 480 LFTAILFFIGVVLIAVGLLYLGLKK 504
                 +  G+ ++   L +L L++
Sbjct: 267 -----WWVTGLSILVALLAWLLLRR 286

A bacterial subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 453 VLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 504
           + T+ITG +G+NV  +P AD+ PYAF     I+  I ++L  +  L L  KK
Sbjct: 242 IPTIITGFYGMNVP-LPFADS-PYAF----WIILLISLLLSVIVALILRRKK 287

A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 289

>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 28/131 (21%)

Query: 379 EIVFELY-QHLRG--NVARTLLEGIRKNAREMIE-EQEAVRGRLFTIQDVMQSTVRAWLQ 434
           E++ E Y Q +    N    L E I  +  E+I    ++ R +L  ++            
Sbjct: 215 EMLLEAYLQQVDELLNKLEELREYID-DTEELINLILDSRRNQLMRLE------------ 261

Query: 435 DRSLRVTHNLAVFGGCGV-VLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLI 493
              L+++      G   + V T++ GLFG+N+    G + +PYAF + T       +++ 
Sbjct: 262 ---LKLS-----IGTLSLAVGTLVAGLFGMNL--PSGLEESPYAFWIVTGGSVVGSILIF 311

Query: 494 AVGLLYLGLKK 504
            V L YL  K+
Sbjct: 312 IVVLRYLRRKR 322

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl|CDD|181941 PRK09546, zntB, zinc transporter; Reviewed

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 455 TVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGL 497
           T +TGLFG+N+ GIPG    P+ F +F  +L  + +  +A  L
Sbjct: 278 TFLTGLFGVNLGGIPGGGW-PFGFSIFCLLLVVL-IGGVAWWL 318

Length = 324

>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 40/183 (21%)

Query: 334 DEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRV-KWSLHAREEIVFELYQHLRGNV 392
           DE+E + +     E +         E+  L R+++R+ +     RE     +   L    
Sbjct: 131 DELEDEILEEPRREVLR--------ELFALRRELLRLRRILSPQRE-----VLNRLLRRE 177

Query: 393 ARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNL-------- 444
              + E +R   R++ +  E +   L + +D++ S + A+L   SL  ++          
Sbjct: 178 NELISEELRPYFRDVYDHLERLAELLDSYRDLLSSLLDAYL---SL-QSNRTNEVMKVLT 233

Query: 445 ---AVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLG 501
               +F    + LT ITG++G+N + +P     PY +         +G++L+  G L   
Sbjct: 234 IITTIF----LPLTFITGIYGMNFEYMPELHW-PYGY------FIVLGIMLLIAGGLLWW 282

Query: 502 LKK 504
            ++
Sbjct: 283 FRR 285

This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 289

>gnl|CDD|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 333 ADEIELKFVN-RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVF---ELYQHL 388
            D+ E K      +L + N    I    I  L R+++R+   +  ++E++    E +  L
Sbjct: 120 IDQFEEKLEELEWDLLEGNN--AIKLDRILELRRELLRLTNLIEPQQEVLMALQEAFAEL 177

Query: 389 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR----VTHNL 444
             +     L         +++  E     L T+QD+ +  V +   +  ++    VT   
Sbjct: 178 LFSEDEEELRRTLDRIERLLQLIEEYEQELDTLQDIEEV-VSSHRGNEIMKTLTVVT--- 233

Query: 445 AVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 504
            VF      LT+I GL+G+N   +P  +   Y +      LF +G+++++   LYL L++
Sbjct: 234 TVFLP----LTLIGGLWGMNFKNMPELEW-KYGY------LFVLGLIILSTAGLYLYLRR 282

A family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this family are found in all three kingdoms of life. It is a functionally diverse family, including the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs (which can also transport Co2+, and Ni2+ ), and the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). It also includes two Saccharomyces cerevisiae members: the inner membrane Mg2+ transporters Mfm1p/Lpe10p, and Mrs2p, and a family of Arabidopsis thaliana members (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 285

>gnl|CDD|213368 cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 77/336 (22%), Positives = 129/336 (38%), Gaps = 68/336 (20%)

Query: 184 WCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELL 243
           W H          W++    L  A    L       S R+     EV      G+L +L 
Sbjct: 4   WLHFNLADARARQWIAAHPALPEAARALLLSGDT--STRL-----EVDDDALYGVLNDLE 56

Query: 244 GQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVP 303
              A        D+   LR       LITA     P+ S + L          V      
Sbjct: 57  RDFAEAS----TDVG-TLRFAVTPRLLITARR--QPLRSVDRLRQA-------VERGLRF 102

Query: 304 RTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRL 363
           R+  +++ HL    +    R+ R+      D IE + ++ R   +         +E+  L
Sbjct: 103 RSPADLLEHLLREQADTLSRIVREL-TDELDRIEDRLLSGRLRRE--------RRELGAL 153

Query: 364 SRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNA-------REMIEEQEAVRG 416
            R+++R+   L      +F L +     +    LE +R+         R+++  QE  R 
Sbjct: 154 RRRLVRLHRLLAPEPAALFRLLRRPPDWLPDADLETLRRLTERLDALDRDLVALQE--RA 211

Query: 417 RLFTIQD-----VMQSTVRAWLQDRSLRVTHNLAVFGGCGVVL---TVITGLFGINVDGI 468
           RL  +Q+     + + T      +RSL +   L+V      +L   T++TGLFG+N  G+
Sbjct: 212 RL--LQEEIAARLAEQT------NRSLYI---LSVVT---ALLLPPTLVTGLFGMNTGGL 257

Query: 469 PGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 504
           P A+      G + A+     + L+A GL YL L++
Sbjct: 258 PLAEGP---HGFWIAVA----LALLAAGLAYLLLRR 286

The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	560
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
PRK09546	324	zntB zinc transporter; Reviewed	100.0
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK11085	316	magnesium/nickel/cobalt transporter CorA; Provisio	100.0
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	100.0
KOG2662	414	consensus Magnesium transporters: CorA family [Ino	99.15
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	96.08
PRK11085	316	magnesium/nickel/cobalt transporter CorA; Provisio	95.83
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	95.0
PRK09546	324	zntB zinc transporter; Reviewed	94.02
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	93.68
PF11902	420	DUF3422: Protein of unknown function (DUF3422); In	93.62
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.22
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	90.23
PF07332	121	DUF1469: Protein of unknown function (DUF1469); In	89.35
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	85.26
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	81.14

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-51  Score=427.42  Aligned_cols=292  Identities=21%  Similarity=0.278  Sum_probs=262.9

Q ss_pred             CCCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccc
Q 008601          177 RPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDD  256 (560)
Q Consensus       177 ~~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d  256 (560)
                      .+..+++|+|+..|++++.++|++.||||+++++++++.++    |||      ++.+++++|++++++.. +.+.+..+
T Consensus        28 ~~~~~~~Widl~~p~~~e~~~l~~~~~l~~~~~ed~~~~~~----r~r------~e~~d~~~~i~~~~~~~-~~~~~~~~   96 (322)
T COG0598          28 LPEDGFVWIDLVEPDDEELEWLAKTFGLHPLALEDLLDAEQ----RPK------VERYDDYLFIVLRDVNL-EEEEDKAE   96 (322)
T ss_pred             cCCCCeEEEECCCCCHHHHHHHHHhcCCCcchHHHHhCccc----CCc------eEeeCCEEEEEEEeecc-cccccccc
Confidence            34455789999999999999999999999999999999987    577      89999999999988765 22222112


Q ss_pred             ccEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008601          257 IPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEI  336 (560)
Q Consensus       257 ~t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeL  336 (560)
                       +.+++|++++++|||+|+.       +..++..+++++.++. ..+.++.+++++|++.++|.|.+ +++++++++++|
T Consensus        97 -~~~v~~i~~~~~liT~r~~-------~~~~~~~vr~r~~~~~-~~~~~~~~l~~~lld~i~d~~~~-~le~i~~~~~~i  166 (322)
T COG0598          97 -TEPVSIIVGKRRLITIRHR-------PLPAFDRVRERLEKGT-LLTRGADELLYALLDAIVDNYFP-VLEQIEDELEAI  166 (322)
T ss_pred             -ceeEEEEEeCCEEEEEecC-------CCccHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHH
Confidence             4999999999999999996       7899999999999963 46789999999999999999999 999999999999


Q ss_pred             HHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcChhHHHHHHHHHHHHHHHHHHHHH
Q 008601          337 ELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRGNVARTLLEGIRKNAREMIEEQEA  413 (560)
Q Consensus       337 E~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~---l~~~~~~~~L~dI~d~~~rlle~lea  413 (560)
                      |++++..+.++        .+.+|+.+||.++++|+++.++++++..+.+.   ...++.+.+++|+.+|+.++.+.++.
T Consensus       167 e~~l~~~~~~~--------~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~  238 (322)
T COG0598         167 EDQLLASTTNE--------ELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEA  238 (322)
T ss_pred             HHHHhcCccHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987542        46799999999999999999999999999862   34778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 008601          414 VRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLI  493 (560)
Q Consensus       414 lre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~  493 (560)
                      ++++++.++|++.|.+    |++||++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|++++++  
T Consensus       239 ~~~~l~~l~d~~~s~i----s~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~-~~~Gy~~~l~~m~~~~~~--  311 (322)
T COG0598         239 LRERLSSLLDAYLSLI----NNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELD-WPYGYPIALILMLLLALL--  311 (322)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCC-CcccHHHHHHHHHHHHHH--
Confidence            9999999999999999    899999999999999999999999999999999999999 999999999999998775  


Q ss_pred             HHHHHHhhccCCc
Q 008601          494 AVGLLYLGLKKPI  506 (560)
Q Consensus       494 ~~~l~y~~~k~~~  506 (560)
                        ...||++|+|+
T Consensus       312 --~~~~frrk~Wl  322 (322)
T COG0598         312 --LYLYFRRKGWL  322 (322)
T ss_pred             --HHHHHHhcCcC
Confidence              45678888884

>PRK09546 zntB zinc transporter; Reviewed

Probab=100.00  E-value=8.2e-50  Score=416.12  Aligned_cols=286  Identities=20%  Similarity=0.302  Sum_probs=248.9

Q ss_pred             CCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhcc-chhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccccc
Q 008601          180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDE-SRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP  258 (560)
Q Consensus       180 ~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~-~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t  258 (560)
                      +.++|+|+..|++++.+||.+. ++||..+++++.+ ++    |||      ++.+++++|++++.+.. ++.....+ +
T Consensus        35 ~~~~Wi~l~~~~~~e~~~L~~~-~~~~~~~~d~l~~~~~----rpk------~e~~~~~~~iil~~~~~-~~~~~~~~-~  101 (324)
T PRK09546         35 AHPCWLHLDYTHPDSAQWLATT-PLLPDNVRDALAGEST----RPR------VSRLGEGTLITLRCING-NTDERPDQ-L  101 (324)
T ss_pred             CCCEEEEeCCCChhHHHHHHhc-CCCCHHHHHHHhCCCC----CCc------EEEECCEEEEEEEeccC-CCCCChhh-e
Confidence            3467999999999999999975 5666666666654 44    688      89999999999998865 33332223 4


Q ss_pred             EEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008601          259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIEL  338 (560)
Q Consensus       259 ~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~  338 (560)
                      .+++||+++++|||+|+.       +...++++++++..+.  .+.++.++++.|++.+++.|.+ +++.++++++++|+
T Consensus       102 ~~l~~~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~--~~~~~~~ll~~lld~ivd~~~~-~l~~i~~~ld~lE~  171 (324)
T PRK09546        102 VAMRVYITDRLIVSTRHR-------KVLALDDVVSDLQEGT--GPTDCGGWLVDVCDALTDHASE-FIEELHDKIIDLED  171 (324)
T ss_pred             EEEEEEEeCCEEEEEecC-------CcccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            899999999999999996       7889999999998875  5667889999999999999999 99999999999999


Q ss_pred             HhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          339 KFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVR  415 (560)
Q Consensus       339 ~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~lealr  415 (560)
                      +++.+...         .+++|+.+||+++++|+++.|+++++.+|.+   ...+++.+.+++|+.+|+.++.+++++++
T Consensus       172 ~l~~~~~~---------~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~~~l~~~~  242 (324)
T PRK09546        172 NLLDQQIP---------PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQDIADRLGRGLDDLDACI  242 (324)
T ss_pred             HHhcCCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99875321         1368999999999999999999999999984   23456789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008601          416 GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAV  495 (560)
Q Consensus       416 e~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~  495 (560)
                      +++..++|.|.+.+    ++++|++||+||++|+||+|||||||||||||++|||++ ||||||+++++|+++++++++ 
T Consensus       243 ~~~~~l~d~~~s~~----s~~~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~-~~~gy~~~l~im~~i~~~~~~-  316 (324)
T PRK09546        243 ARTAVLADEIASVM----AEAMNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGG-WPFGFSIFCLLLVVLIGGVAW-  316 (324)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcC-CcchHHHHHHHHHHHHHHHHH-
Confidence            99999999999998    799999999999999999999999999999999999999 999999999999988876544 


Q ss_pred             HHHHhhccCCc
Q 008601          496 GLLYLGLKKPI  506 (560)
Q Consensus       496 ~l~y~~~k~~~  506 (560)
                         ||++|+|+
T Consensus       317 ---~fkrk~Wl  324 (324)
T PRK09546        317 ---WLKRSKWL  324 (324)
T ss_pred             ---HHHhcccC
Confidence               67888885

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=100.00  E-value=3.2e-49  Score=409.22  Aligned_cols=305  Identities=16%  Similarity=0.179  Sum_probs=261.5

Q ss_pred             CCCccccccCccccCCCCCeEEEEecCCCHHH-HHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEE
Q 008601          163 DDITVADLAAPYWERPAGPVWWCHMLAGHPSV-EAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFE  241 (560)
Q Consensus       163 ~~l~~~dl~~~~~~~~~~~~~WIdl~~pt~~e-~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfii  241 (560)
                      +.++....... +...++..+|+|+.+|++++ +++|.+.||+|+.+++++++.++    |||      ++.+++++|++
T Consensus         9 ~~~~~~~~~~~-~~~~~~~~~Widl~~p~~~e~~~~l~~~~~l~~~~~ed~~~~~~----~~k------~e~~~~~~~i~   77 (318)
T TIGR00383         9 SRLIKIPFFEE-FSQELNTVLWIDLIEPTDEETLAKLGQFFAIHPLALEDILNSPQ----RPK------VEEDEDHLFII   77 (318)
T ss_pred             ccceEecchhh-hcCCCCceEEEEccCCCcHHHHHHHHHHcCcCcchHHHhhCCCC----CCc------EEEECCEEEEE
Confidence            44444443221 24455667899999999999 89999999999999999999876    578      88999999999


Q ss_pred             EeccccCCCCCCcccccEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhh
Q 008601          242 LLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWD  321 (560)
Q Consensus       242 L~~~~~~~~~~e~~d~t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~  321 (560)
                      ++.+.. +..... . +.+++|++++++|||++..       +...++.+++++..++.....++.++++.|++.+++.|
T Consensus        78 ~~~~~~-~~~~~~-~-~~~l~~~l~~~~liTv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~il~~ivd~~  147 (318)
T TIGR00383        78 SFFLNE-DEDDTF-E-TEQVSFILGKNLLFTIHER-------ELPAFDSIRERIRTSQKVFEKGADYLLYDIFDAIIDSY  147 (318)
T ss_pred             EEeeec-cCCCcc-e-eEEEEEEEECCEEEEEEcC-------CCCcHHHHHHHHHhCchhhhCCHHHHHHHHHHHHHhcc
Confidence            988764 221111 2 5899999999999999986       67889999998877642223478999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--cChhHHHHH
Q 008601          322 DRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--L--RGNVARTLL  397 (560)
Q Consensus       322 ~~~~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~--l--~~~~~~~~L  397 (560)
                      .+ .++.++++++++|++++..+.+.        .+.+|+.+|++++++++++.++++++..+.+.  +  ..++.+.++
T Consensus       148 ~~-~l~~l~~~~~~le~~l~~~~~~~--------~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~  218 (318)
T TIGR00383       148 FP-LLENIEDELEELEDEIISGPTST--------LMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYL  218 (318)
T ss_pred             HH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence            99 99999999999999999865422        46799999999999999999999999999752  2  246788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCch
Q 008601          398 EGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYA  477 (560)
Q Consensus       398 ~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyG  477 (560)
                      +|+.+++.++.+.++.+++++..++|.+.+.+    ++++|++||+||++|+||+|||||||+|||||++||+++ |+||
T Consensus       219 ~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~----s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~-~~~g  293 (318)
T TIGR00383       219 RDIYDHILSLLEMIETYRELLSSLMDLYLSLV----NNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELN-WKYG  293 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCcccc-chhH
Confidence            99999999999999999999999999999998    899999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 008601          478 FGLFTAILFFIGVVLIAVGLLYLGLKKPI  506 (560)
Q Consensus       478 y~i~l~imvlia~vl~~~~l~y~~~k~~~  506 (560)
                      ||+++++|++++++    .+.||++|+|+
T Consensus       294 y~~~l~~m~~i~~~----~~~~fkrk~Wl  318 (318)
T TIGR00383       294 YPAVLIVMAVIALG----PLIYFRRKGWL  318 (318)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence            99999999988765    56678889885

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional

Probab=100.00  E-value=2.1e-43  Score=366.44  Aligned_cols=290  Identities=10%  Similarity=0.057  Sum_probs=243.1

Q ss_pred             CeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccEE
Q 008601          181 PVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIV  260 (560)
Q Consensus       181 ~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~~  260 (560)
                      .++|||+..|+++|.+++++.||+|..+.+++.+-+.+    ||      ++.+++++++....... .+.....  +.+
T Consensus        25 ~~vWiDl~~Pt~eE~~~v~~~~gl~~pt~~~~eeIe~s----sR------~~~~~~~~~~~~~~~~~-~~~~~~~--~~~   91 (316)
T PRK11085         25 DAVWIDLVEPDDDERLRVQSELGQSLATRPELEDIEAS----AR------FFEDEDGLHIHSFFFFE-DAEDHAG--NST   91 (316)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHhCCCCCChhhHHHHhhC----ce------EEEECCeEEEEEEEEec-CCCCCcc--cee
Confidence            46799999999999999999999996666665555443    33      78888887766655433 1222222  489


Q ss_pred             EEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 008601          261 LRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKF  340 (560)
Q Consensus       261 L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~v  340 (560)
                      ++|++++++|||+|+.       +...+..+++++..++ ....++.++++.|++.++|++.+ .++.++.++|.++..+
T Consensus        92 v~fil~~~~LvTvr~~-------~~~~f~~~~~r~~~~~-~~~~~~~~vl~~Lld~iVd~~ad-~lE~~~~~ld~ls~~i  162 (316)
T PRK11085         92 VAFTIRDGRLFTLRER-------ELPAFRLYRMRARSQT-LVDGNAYELLLDLFETKIEQLAD-EIENIYSDLEKLSRVI  162 (316)
T ss_pred             EEEEEECCEEEEEecC-------CcchHHHHHHHHHhCC-cccCCHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHh
Confidence            9999999999999996       6889999999998775 22458999999999999999999 9999999999999999


Q ss_pred             hcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          341 VNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LRGNVARTLLEGIRKNAREMIEEQEAVRGRL  418 (560)
Q Consensus       341 ~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~--l~~~~~~~~L~dI~d~~~rlle~lealre~l  418 (560)
                      +.++...+   + ...+++|.++++.+..+|+++.+.++++..+.+.  + ..+....++++.+++.++.+..+.+++++
T Consensus       163 f~~~~~~~---~-~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~-~~~~~~~~~~~~~Di~~l~~~~~~~~~~~  237 (316)
T PRK11085        163 MEGHQGDE---Y-DEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARL-PGGQLEQAREILRDIESLLPHNESLFQKV  237 (316)
T ss_pred             ccCCCchh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            97542222   1 3466899999999999999999999999988752  3 23444667888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008601          419 FTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLL  498 (560)
Q Consensus       419 ~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~  498 (560)
                      ..++|++.+.+    |+++|++||+||++|+||+|||+|||+|||||++|||++ |+||||+++++|+++++++    +.
T Consensus       238 ~~l~d~~~~~i----~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~-~~~g~~~~l~~~~~~~~~~----~~  308 (316)
T PRK11085        238 NFLMQAAMGFI----NIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELK-WSFGYPGAIILMILAGLAP----YL  308 (316)
T ss_pred             HHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC-CcHHHHHHHHHHHHHHHHH----HH
Confidence            99999999998    899999999999999999999999999999999999999 9999999999999887754    44


Q ss_pred             HhhccCCc
Q 008601          499 YLGLKKPI  506 (560)
Q Consensus       499 y~~~k~~~  506 (560)
                      ||++|+|+
T Consensus       309 ~f~rk~Wl  316 (316)
T PRK11085        309 YFKRKNWL  316 (316)
T ss_pred             HHHHcccC
Confidence            67888884

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=100.00  E-value=2.4e-43  Score=357.27  Aligned_cols=277  Identities=23%  Similarity=0.302  Sum_probs=234.6

Q ss_pred             CCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccE
Q 008601          180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPI  259 (560)
Q Consensus       180 ~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~  259 (560)
                      +.++|+|+.+|+++++++|.+.||||+.++++++++++    |||      ++.++++.+++++.+.. .+...... ..
T Consensus         2 ~~~~Wi~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~----~~~------~~~~~~~~~~~l~~~~~-~~~~~~~~-~~   69 (292)
T PF01544_consen    2 DGFVWIDLSGPDDEELEWLAEEFGLHPLTIEDALDPEE----RPR------IEVFDDYLFIVLRAPEY-EEEDDIDE-ES   69 (292)
T ss_dssp             SS-EEEEEETTTCHHHHHHHHTTTS-HHHHHHHCCTSS----SSE------EEEETTEEEEEEEEEEE-STTCCECC-EE
T ss_pred             CccEEEEEeCCCHHHHHHHHHHhCcCHhHHHHHhCCCc----CCE------EEEECCeEEEEEEEcch-hhcccccc-cc
Confidence            35789999999999999999999999999999999887    467      89999999999998876 33222222 25


Q ss_pred             EEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008601          260 VLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELK  339 (560)
Q Consensus       260 ~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~  339 (560)
                      ++++++++++|||++..       +...++++.+++... ...+.++.++++.+++.+++.|.+ .++.++++++++|+.
T Consensus        70 ~l~~~~~~~~lit~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~ll~~il~~~~~~~~~-~l~~l~~~l~~le~~  140 (292)
T PF01544_consen   70 PLSFILGDNFLITVHRD-------PLPFIDELRERLESR-NERPSSPEDLLYAILDEIVDDYFE-VLEELEDELDELEDE  140 (292)
T ss_dssp             EEEEEEETTEEEEEESS-------SSHCHHHHHHHHHST-TCSCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             eEEEEEecceEEEEECC-------CChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence            89999999999999996       688899999999822 247789999999999999999999 999999999999999


Q ss_pred             hhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          340 FVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQEAVR  415 (560)
Q Consensus       340 v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~----~l~~~~~~~~L~dI~d~~~rlle~lealr  415 (560)
                      +.....+        ...++|..+|+.+.++++.+.+.++++.++..    ...+++.+.+++++.+++.++.+.++.++
T Consensus       141 ~~~~~~~--------~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (292)
T PF01544_consen  141 LDDRPSN--------ELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLR  212 (292)
T ss_dssp             HTHTTTH--------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccch--------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9655532        24679999999999999999999999977775    22345678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHH--HHHHHHHHH
Q 008601          416 GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLF--TAILFFIGV  490 (560)
Q Consensus       416 e~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~--l~imvlia~  490 (560)
                      +++..+++.+.+.+    ++++|++||+||++|+||+|+|||||+|||||++||+.+ |+|||+++  +++|+++++
T Consensus       213 ~~~~~l~~~~~~~~----~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~-~~~g~~~~~~~~~~~~~~~  284 (292)
T PF01544_consen  213 ERLESLQDLYQSKL----SNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELD-WPYGYFFVIILGLMILVAI  284 (292)
T ss_dssp             HHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSS-SSS-SHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccC-CccHHHHHHHHHHHHHHHH
Confidence            99999999999998    799999999999999999999999999999999999999 99988877  555555443

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]

Probab=99.15  E-value=4.1e-09  Score=111.33  Aligned_cols=143  Identities=22%  Similarity=0.331  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hh---------------cC----------------hh
Q 008601          356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQ------------HL---------------RG----------------NV  392 (560)
Q Consensus       356 ~l~~I~~LRr~li~Lrr~L~~~revl~~L~~------------~l---------------~~----------------~~  392 (560)
                      .++++..+++.+..+..-....++.+.+|+.            ++               ..                ++
T Consensus       218 nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~d  297 (414)
T KOG2662|consen  218 NLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGED  297 (414)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccc
Confidence            3678899999999987777778888887762            11               00                01


Q ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccCC
Q 008601          393 ART----LLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTH---NLAVFGGCGVVLTVITGLFGINV  465 (560)
Q Consensus       393 ~~~----~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK---~LTVvSaIFLPLTfIaGiyGMNF  465 (560)
                      +.+    .|+.=+.++..+.+.++.+++.+....|.+.=+    ++++.|+.|.   .||+-|.++..-++++|+||||.
T Consensus       298 d~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~----LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl  373 (414)
T KOG2662|consen  298 DVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQ----LDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNL  373 (414)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            111    111112334444444445555555444433333    3666777665   58999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008601          466 DGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK  504 (560)
Q Consensus       466 ~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~  504 (560)
                      . .+..+ .||+|+++++++++++++++..-+-|.+.||
T Consensus       374 ~-~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~kr  410 (414)
T KOG2662|consen  374 P-SSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKR  410 (414)
T ss_pred             c-chhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8 66666 7999999999999999999999888888887

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=96.08  E-value=0.11  Score=52.81  Aligned_cols=169  Identities=15%  Similarity=0.185  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cChhHHHHHHHH
Q 008601          325 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHL----RGNVARTLLEGI  400 (560)
Q Consensus       325 ~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~l----~~~~~~~~L~dI  400 (560)
                      .++.....++.+++++-.-.   +     ......-...-+++..+|+.+...+..+.....-+    ........-.+.
T Consensus       119 ~~~~~~~~l~~l~~~l~~le---~-----~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~  190 (292)
T PF01544_consen  119 IVDDYFEVLEELEDELDELE---D-----ELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDED  190 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---H-----HHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---h-----hcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhH
Confidence            45666677777776653321   0     00011223344556667777766666655544322    111222223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHH
Q 008601          401 RKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGL  480 (560)
Q Consensus       401 ~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i  480 (560)
                      ...+..+.+.++.+.+++..+.+...+..+...+...++.-+.+..+|++-+...=+|=+-|+ |+ |-... -|..-|-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-fG-MN~~~-~p~~~~~  267 (292)
T PF01544_consen  191 KEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-FG-MNFKG-MPELDWP  267 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-TT-S-SS----SSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCccC-CCccCCc
Confidence            566888899999999999999999999988888888888888888887777777555666665 44 76555 4543322


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhccC
Q 008601          481 -FTAILFFIGVVLIAVGLLYLGLKK  504 (560)
Q Consensus       481 -~l~imvlia~vl~~~~l~y~~~k~  504 (560)
                       .....+++++++++.++.|+.+||
T Consensus       268 ~g~~~~~~~~~~~~~~~~~~~~~kR  292 (292)
T PF01544_consen  268 YGYFFVIILGLMILVAILLYWWFKR  292 (292)
T ss_dssp             S-SHHH--HHHHHHHHHHHHCCTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHheeC
Confidence             233333345555566666666665

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional

Probab=95.83  E-value=0.93  Score=48.03  Aligned_cols=110  Identities=13%  Similarity=0.049  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          362 RLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSL  438 (560)
Q Consensus       362 ~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N  438 (560)
                      ++=+++.++++.+...++.+..+.+   .+...  .....+..++++.+.++++.+.++++.+.|...+.+.+.++.-.|
T Consensus       173 ~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~--~~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~  250 (316)
T PRK11085        173 EALSTLAELEDIGWKVRLCLMDTQRALNFLVRK--ARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINI  250 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3335566666666666666554443   22211  112222334556666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCc
Q 008601          439 RVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY  476 (560)
Q Consensus       439 ~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~py  476 (560)
                      +.=.++-++|++-......|=+-|+ | ||=.-. -|.
T Consensus       251 ~~N~~mk~lTv~s~if~pptliagi-y-GMNf~~-mP~  285 (316)
T PRK11085        251 EQNRIIKIFSVVSVVFLPPTLVASS-Y-GMNFEF-MPE  285 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-c-ccccCC-CCC
Confidence            6666666666666666666666665 3 355444 453

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=95.00  E-value=2.7  Score=44.41  Aligned_cols=140  Identities=15%  Similarity=0.138  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHH
Q 008601          325 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR  401 (560)
Q Consensus       325 ~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~  401 (560)
                      +.+.+..-++++|+++-.=.   +     ..+...-.....++..+++.+.-.+..+..+.+   .+........-.+..
T Consensus       148 i~d~~~~~le~i~~~~~~ie---~-----~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~  219 (322)
T COG0598         148 IVDNYFPVLEQIEDELEAIE---D-----QLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDR  219 (322)
T ss_pred             HHHhhHHHHHHHHHHHHHHH---H-----HHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHH
Confidence            45666666666666654321   1     001111123566667777777666666554432   332222223445666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 008601          402 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTP  475 (560)
Q Consensus       402 d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~p  475 (560)
                      +.++.+.+++.++.+++..+.+...+++.+.++.-.|+.=.++-++|++-..+.-.|=+.|. | ||=.-. -|
T Consensus       220 ~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-y-GMNf~~-mP  290 (322)
T COG0598         220 EYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-Y-GMNFKG-MP  290 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-c-ccCCCC-Cc
Confidence            77777777778888888888887777777777777777777777888777777777777775 4 365554 45

>PRK09546 zntB zinc transporter; Reviewed

Probab=94.02  E-value=7.6  Score=40.87  Aligned_cols=124  Identities=11%  Similarity=0.035  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          356 LNQEIRRLSRQVIRVKWSLHAREEI----VFE-LYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVR  430 (560)
Q Consensus       356 ~l~~I~~LRr~li~Lrr~L~~~rev----l~~-L~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs  430 (560)
                      +.+++..+|+.+...+..+......    +.. ....+.  +....+..+.+.+..+.+.+..+.+...++.   .+.+ 
T Consensus       187 lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~--Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~---s~~~-  260 (324)
T PRK09546        187 LRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQ--DIADRLGRGLDDLDACIARTAVLADEIASVM---AEAM-  260 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-
Confidence            5678889999988888887554321    111 111221  2333344444555555555555555444333   3343 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 008601          431 AWLQDRSLRVTHNLAVFGGCGVVLTVITGLF--GINVDGIPGADNTPYAFGLFTAILFFIGVV  491 (560)
Q Consensus       431 ~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiy--GMNF~~MPel~~~pyGy~i~l~imvlia~v  491 (560)
                          |+..++|+++|++.+...-+|=|-|+=  ||=+-+-|..  +++...+.+++++++...
T Consensus       261 ----N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~g--y~~~l~im~~i~~~~~~~  317 (324)
T PRK09546        261 ----NRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFG--FSIFCLLLVVLIGGVAWW  317 (324)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcCCcch--HHHHHHHHHHHHHHHHHH
Confidence                667889999999999999999999975  7998878753  555554444444444443

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=93.68  E-value=3.6  Score=42.83  Aligned_cols=122  Identities=11%  Similarity=0.006  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          356 LNQEIRRLSRQVIRVKWSLHAREEI--V----FELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV  429 (560)
Q Consensus       356 ~l~~I~~LRr~li~Lrr~L~~~rev--l----~~L~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~v  429 (560)
                      +.+++..+|+.+...+..+.....-  +    ......+.  +....+..+.+.+..+-+.++.+.+...++.+   +.+
T Consensus       180 l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~--dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s---~~~  254 (318)
T TIGR00383       180 LRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLR--DIYDHILSLLEMIETYRELLSSLMDLYLSLVN---NKM  254 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            3456667777777666666443321  1    11111121  22233444555555555555555554444332   232


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 008601          430 RAWLQDRSLRVTHNLAVFGGCGVVLTVITGLF--GINVDGIPGADNTPYAFGLFTAILFFIG  489 (560)
Q Consensus       430 s~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiy--GMNF~~MPel~~~pyGy~i~l~imvlia  489 (560)
                           |+.-+++-++|++-+...-++=|-|+=  ||=+-+.|..  +++...+.+++++++.
T Consensus       255 -----N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~g--y~~~l~~m~~i~~~~~  309 (318)
T TIGR00383       255 -----NEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYG--YPAVLIVMAVIALGPL  309 (318)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhH--HHHHHHHHHHHHHHHH
Confidence                 445556667777777777777777763  4665444432  4555544444444433

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised

Probab=93.62  E-value=13  Score=41.18  Aligned_cols=184  Identities=17%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 008601          308 EVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSL---HAREEIVFEL  384 (560)
Q Consensus       308 ~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L---~~~revl~~L  384 (560)
                      ..+..|.-=++....+ .+..+|.++..|-.++-......+      .++.+|..|-.++-.+.-..   ..--.++..+
T Consensus       201 R~mALL~LP~Ar~~~~-~L~~~E~~L~~l~~~~~~~~~~~~------~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~i  273 (420)
T PF11902_consen  201 RMMALLGLPVARELSP-ELSELEQRLAALTQRMASSEDTDD------ELLDELTRLAAEVEALAARTSYRFSASRAYYEI  273 (420)
T ss_pred             HHHHHccCHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            3444444456666667 788889999888888887743332      35667777777665552221   0111222322


Q ss_pred             Hh---------hhc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH
Q 008601          385 YQ---------HLR-----GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV-----------------RAWL  433 (560)
Q Consensus       385 ~~---------~l~-----~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~v-----------------s~~~  433 (560)
                      ..         .+.     .+-....|.-...-|..+.+.++.+.+++....+...+.+                 ++.+
T Consensus       274 V~~RL~eLrE~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa~l  353 (420)
T PF11902_consen  274 VEQRLAELREERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRARL  353 (420)
T ss_pred             HHHHHHHhcccccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            21         111     1111112222222222233333333333222222222222                 1235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601          434 QDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK  503 (560)
Q Consensus       434 n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k  503 (560)
                      +-++-++.--|+|+++-.=    +.|+.|.=++++.... +|+.--++.++++-++++.+|+++.+++.+
T Consensus       354 QLrLQqtVEGLSVvAIsYY----~vgL~~y~~k~l~~~g-~~~~~~l~~g~~vP~v~~~vw~~~rrir~~  418 (420)
T PF11902_consen  354 QLRLQQTVEGLSVVAISYY----VVGLLGYLLKGLKAAG-LPVDPELATGLAVPVVLLAVWLGVRRIRRR  418 (420)
T ss_pred             HHHHHHHhhhHHHHHHHHH----HHHHHHHHHhhHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666677777888876553    5567777778888877 788777788888888888888888887654

This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.22  E-value=0.96  Score=43.78  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhH
Q 008601          442 HNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQ  510 (560)
Q Consensus       442 K~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~  510 (560)
                      ++.+++.+|...+-+++|+-|-=|. .|++. ..+.+. +.+++++++++++..|+.++..+++.....
T Consensus         5 ~i~~i~~iilgilli~~gI~~Lv~~-~~~l~-~~~s~~-lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~   70 (191)
T PF04156_consen    5 RIISIILIILGILLIASGIAALVLF-ISGLG-ALISFI-LGIALLALGVVLLSLGLLCLLSKRPVQSVR   70 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHccccccch
Confidence            4556666666666667777775443 34444 222222 222345567888899999998888875533

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=90.23  E-value=32  Score=37.71  Aligned_cols=71  Identities=18%  Similarity=0.148  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 008601          401 RKNAREMIEEQEAVRGRLFTIQ-DVMQSTVR----------AWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIP  469 (560)
Q Consensus       401 ~d~~~rlle~lealre~l~~L~-D~~~S~vs----------~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MP  469 (560)
                      +++++.+.|.+++++.++..|- ...+..+.          ..+..-+|-   .||+++++   |.||+.+.|  |. +|
T Consensus       297 ~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inl---lL~l~~vl---Lv~vSt~~~--~~-~P  367 (395)
T PF10267_consen  297 YERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINL---LLTLLTVL---LVFVSTVAN--CP-LP  367 (395)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHH---HHHHHHHH---HHHHHHHhc--CC-cH
Confidence            5667777777777777777665 11111110          112222332   33444444   444444443  45 99


Q ss_pred             CCCCCCchHHHH
Q 008601          470 GADNTPYAFGLF  481 (560)
Q Consensus       470 el~~~pyGy~i~  481 (560)
                      .+. +++-...+
T Consensus       368 l~~-tR~r~~~t  378 (395)
T PF10267_consen  368 LTR-TRLRTLTT  378 (395)
T ss_pred             Hhh-ccHHHHHH
Confidence            999 88655433

Its function is unknown.

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like

Probab=89.35  E-value=5.8  Score=35.50  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008601          445 AVFGGCGVVLTVITGLFGINVDGIPGAD-NTPYAFGLFTAILFFIGVVLIAVGLLYLGL  502 (560)
Q Consensus       445 TVvSaIFLPLTfIaGiyGMNF~~MPel~-~~pyGy~i~l~imvlia~vl~~~~l~y~~~  502 (560)
                      .+++++|+-..++...++..+--.|... +..+|++++.++.+++++++++++...+..
T Consensus        41 ~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~~~~~~~l~~   99 (121)
T PF07332_consen   41 LVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILLLIGRRRLRR   99 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444444444444444443112111 023578888888888888888888887764

The function is not known.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=85.26  E-value=46  Score=33.79  Aligned_cols=35  Identities=3%  Similarity=0.028  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-c-cCCCCCC
Q 008601          435 DRSLRVTHNLAVFGGCGVVLTVITGLF-G-INVDGIP  469 (560)
Q Consensus       435 ~r~N~vMK~LTVvSaIFLPLTfIaGiy-G-MNF~~MP  469 (560)
                      .+++..++-++.+-.||+--++|.-+- + |+|=|+|
T Consensus       145 k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~  181 (230)
T PF03904_consen  145 KRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD  181 (230)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence            345555555555555555444443221 3 5665554

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=81.14  E-value=5.4  Score=39.42  Aligned_cols=52  Identities=29%  Similarity=0.325  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ChhHHHHHHHHHHHHHHHHHHH
Q 008601          360 IRRLSRQVIRVKWSLHAREEIVFELYQHLR-----GNVARTLLEGIRKNAREMIEEQ  411 (560)
Q Consensus       360 I~~LRr~li~Lrr~L~~~revl~~L~~~l~-----~~~~~~~L~dI~d~~~rlle~l  411 (560)
                      +.++++++..-...-...++++.+++.++.     +..++..|.+....+.++++..
T Consensus        10 ~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~~   66 (206)
T PF06570_consen   10 IFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFGDPKEYADELIKPL   66 (206)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhccc
Confidence            445555553333334455556666665432     4456677777777777776643

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	560
3ck6_A	252	Putative membrane transport protein; APC91421.1, Z	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
2iub_A	363	CORA, divalent cation transport-related protein; m	2e-06

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* Length = 252

 Score = 68.1 bits (166), Expect = 5e-13
 Identities = 39/275 (14%), Positives = 79/275 (28%), Gaps = 40/275 (14%)

Query: 158 LIDDEDDITVADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESR 217
           +I+  D  T              P  W H    HP +  WL         V   L DESR
Sbjct: 7   MIEHWDFSTPMATQETTTAEHIQPNHWYHCERLHPDIRGWLEDNHVPRATVDHLLADESR 66

Query: 218 LISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVK 277
                +               +  L G +  +    ED + I  R    Q  LI+   + 
Sbjct: 67  PSFHPLD----------DDNFMLILRGINMNENASPEDMLSI--RILYFQGALISTRKIP 114

Query: 278 GPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337
                       E+++ L       P+++  ++  +   L+    ++    +    + + 
Sbjct: 115 SRAIM-------EIRQALAEH--KGPKSLASLLNQIIEGLN---GKIDL-YLDTIEETLN 161

Query: 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRGNVAR 394
                    +                 + +I +K  +  ++  + +L +    L  +   
Sbjct: 162 -------EFDV----NDESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESELVTSRPH 210

Query: 395 TLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 429
                     R + E  E   G +   QD ++   
Sbjct: 211 QYRFAHNNITR-INETIEFYLGEVALFQDEIKHNR 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 87/602 (14%), Positives = 172/602 (28%), Gaps = 192/602 (31%)

Query: 17  QNHNMKKPESNKKYANKDVMPRCELWTDGLICAFEF--IQGRKRSVTSKSDSRTLSDSEN 74
            +H+M       +Y  KD++    ++ D  +  F+   +Q   +S+ SK +   +     
Sbjct: 3   HHHHMDFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHI----- 54

Query: 75  SKKKVPAEGLGEASPESDRNKLLDSLLLDELRGGQSF----------------------P 112
                    +      S   +L  +LL  +    Q F                      P
Sbjct: 55  ---------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 113 LGD-----SRHNRLSQSSQFNAAARFEGSHWVPIGWARISELVQTVQQLELIDDEDDITV 167
                    + +RL     +N    F   + V     R+   ++  Q L  +    ++ +
Sbjct: 106 SMMTRMYIEQRDRL-----YNDNQVFAKYN-VS----RLQPYLKLRQALLELRPAKNVLI 155

Query: 168 ADLAAPYWERPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLL 227
                               + G        SG  W+              +  +M    
Sbjct: 156 ------------------DGVLG--------SGKTWV---ALDVCLSYK--VQCKM---- 180

Query: 228 YEVPVRVAGGLLFEL-LGQSAGDPFVDEDDIPIVLRSWQAQNFLITA---LHVKGPVSSN 283
                ++     F L L           + +  +L     Q  L         +   SSN
Sbjct: 181 ---DFKI-----FWLNLKNCN-----SPETVLEML-----QKLLYQIDPNWTSRSDHSSN 222

Query: 284 NVLGITEVQE----LLFVGGYN----VPRTV--HEVIAH--LACRL---SRWDDRLFRKT 328
             L I  +Q     LL    Y     V   V   +      L+C++   +R   ++    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFL 281

Query: 329 IFGAADEIELKFVNRRNLED--MNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ 386
                  I L   +     D   +L    L+   + L R+V+       +   I+ E   
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAES-- 336

Query: 387 HLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAV 446
            +R  +A         N + +  ++         +  +++S++   L+    R      +
Sbjct: 337 -IRDGLATW------DNWKHVNCDK---------LTTIIESSLNV-LEPAEYR-----KM 374

Query: 447 FGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 506
           F    V        F  +   IP          L    +    V+++   L     K  +
Sbjct: 375 FDRLSV--------FPPSAH-IP-----TILLSLIWFDVIKSDVMVVVNKL----HKYSL 416

Query: 507 TEEQVEVRKLEL----QELVKKFQHEAETHAQVRKNVR-------NNLTPTAGDIISDAD 555
            E+Q +   + +     EL  K ++E   H  +  +         ++L P   D      
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-----Q 471

Query: 556 YI 557
           Y 
Sbjct: 472 YF 473

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 29/177 (16%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 334 DEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNV- 392
           D +E + + R   E +        Q   +L R ++ ++ ++    E++  LY+ +   + 
Sbjct: 205 DVLEEEVLERPEKETV--------QRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 256

Query: 393 --ARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR---VTHNLAVF 447
                    +  +  ++ +  E  R  +  + DV  S+V       S +   V   L + 
Sbjct: 257 KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSV-------SNKTNEVMKVLTII 309

Query: 448 GGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 504
               + LT I G++G+N + +P      + +         + V+ +   ++ +  KK
Sbjct: 310 ATIFMPLTFIAGIYGMNFEYMPELR-WKWGY------PVVLAVMGVIAVIMVVYFKK 359

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	560
2iub_A	363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A	339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A	280	Magnesium transport protein CORA; magnesium transp	100.0
3ck6_A	252	Putative membrane transport protein; APC91421.1, Z	99.97
3nvo_A	264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.97
2bbh_A	269	Divalent cation transport-related protein; transpo	99.94
2hn1_A	266	CORA, magnesium and cobalt transporter; integral m	99.93
2iub_A	363	CORA, divalent cation transport-related protein; m	95.25
4ev6_A	339	Magnesium transport protein CORA; membrane protein	94.84

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=100.00  E-value=1.2e-52  Score=441.93  Aligned_cols=290  Identities=17%  Similarity=0.167  Sum_probs=240.5

Q ss_pred             CCeEEEEecCC-CHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccccc
Q 008601          180 GPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP  258 (560)
Q Consensus       180 ~~~~WIdl~~p-t~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t  258 (560)
                      +.++|||+..| +++++++|++.|||||++++|+++.++    |||      ++.+++++|++++.+.. ++..+... +
T Consensus        69 ~~~~Wi~l~~p~~~~e~~~l~~~f~l~~l~ied~l~~~~----rpk------~e~~~~~lfivl~~~~~-~~~~~~~~-~  136 (363)
T 2iub_A           69 STPTWINITGIHRTDVVQRVGEFFGIHPLVLEDILNVHQ----RPK------VEFFENYVFIVLKMFTY-DKNLHELE-S  136 (363)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHTTCCHHHHHHHHCCSS----CCE------EEEETTEEEEEEEEEEE-ETTTTEEE-E
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHcCcChhHHHHHhCCCC----CCe------EEEECCEEEEEEEeeee-cccccccc-e
Confidence            45789999999 599999999999999999999999886    688      89999999999998765 22211112 4


Q ss_pred             EEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601          259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN-VPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE  337 (560)
Q Consensus       259 ~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~-~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE  337 (560)
                      .+++||+++++|||+++.       +...++.+++++.+++.. ...++..+++.|++.++|.|.+ +++.+++++++||
T Consensus       137 ~~v~~~l~~~~liTv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE  208 (363)
T 2iub_A          137 EQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLE  208 (363)
T ss_dssp             EEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEEeC-------CCchHHHHHHHHHhcCCccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            899999999999999996       577889999999876311 2347888999999999999999 9999999999999


Q ss_pred             HHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 008601          338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAV  414 (560)
Q Consensus       338 ~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~leal  414 (560)
                      ++++..+.+.        .+++|+.+||+++++|+++.|+++++..|.+   ....++.+.+++|+.+|+.++.+.++.+
T Consensus       209 ~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~  280 (363)
T 2iub_A          209 EEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETF  280 (363)
T ss_dssp             HHTTSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999876422        4679999999999999999999999999985   2335678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008601          415 RGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIA  494 (560)
Q Consensus       415 re~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~  494 (560)
                      ++++..++|++.|.+    ++++|++||+||++|+||+|||||||+|||||++|||++ |+||||+++++|++++++   
T Consensus       281 re~l~~l~d~~~s~i----s~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~Gy~~~l~~m~~i~~~---  352 (363)
T 2iub_A          281 RDIVSGLLDVYLSSV----SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR-WKWGYPVVLAVMGVIAVI---  352 (363)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc-CcHHHHHHHHHHHHHHHH---
Confidence            999999999999998    799999999999999999999999999999999999999 999999999999887764   


Q ss_pred             HHHHHhhccCCc
Q 008601          495 VGLLYLGLKKPI  506 (560)
Q Consensus       495 ~~l~y~~~k~~~  506 (560)
                       .++||++|+|+
T Consensus       353 -~~~~Fkrk~Wl  363 (363)
T 2iub_A          353 -MVVYFKKKKWL  363 (363)
T ss_dssp             -HHTTTTSCC--
T ss_pred             -HHHHHHHcccC
Confidence             46788889885

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1e-51  Score=431.05  Aligned_cols=289  Identities=17%  Similarity=0.151  Sum_probs=256.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccc
Q 008601          178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI  257 (560)
Q Consensus       178 ~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~  257 (560)
                      .+..++|||+.+|+++|+++|++.|||||++++|+++.++    |||      ++.+++++|++++.+.. +++  . + 
T Consensus        46 ~d~~~vWIdl~~Pt~~E~~~l~~~~~l~~~~~ed~l~~~~----rpk------~e~~~~~~~iv~~~~~~-~~~--~-~-  110 (339)
T 4ev6_A           46 EDYRLIWIDCYDPKDEELYKLSKKIGISVSDLQIGLDEQE----IPR------VEEDEDFYLIIYKAPLF-EED--I-T-  110 (339)
T ss_dssp             SSCSCEEEEEESCCHHHHHHHHHHHTCCHHHHHHHHCTTC----CCE------EEEETTEEEEECCCCCC-TTT--C-C-
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHHHHCcCHhHHHHhhCCcc----CCe------EEEECCEEEEEEecCcc-CCC--c-c-
Confidence            3455889999999999999999999999999999999987    688      89999999999987654 222  1 1 


Q ss_pred             cEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008601          258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN--VPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADE  335 (560)
Q Consensus       258 t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~--~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~lde  335 (560)
                      +.++++|+++++|||+|+.       +...++.+++++..++..  ...++..++++|++.++|.|.+ +++.+++++++
T Consensus       111 ~~~v~i~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lld~ivd~~~~-~l~~l~~~i~~  182 (339)
T 4ev6_A          111 TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSR-ILMNLEDELEE  182 (339)
T ss_dssp             CCCCEEEEETTEEEEEESS-------CCHHHHHHHHHSSSSSSCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             eEEEEEEEECCeeEEeecC-------CcchhHHHHHHHHcCCCccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4789999999999999996       688899999988765421  2457899999999999999999 99999999999


Q ss_pred             HHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHH
Q 008601          336 IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQE  412 (560)
Q Consensus       336 LE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~le  412 (560)
                      ||++++.++.++        .+++|+.+||+++++|+++.|+++++..|.+   ....++.+.+++|+.+++.++.+.++
T Consensus       183 lE~~l~~~~~~~--------~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~  254 (339)
T 4ev6_A          183 LEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSA  254 (339)
T ss_dssp             HHHTSTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999876432        5679999999999999999999999999985   23467889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 008601          413 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVL  492 (560)
Q Consensus       413 alre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl  492 (560)
                      .+++++..++|++.|.+    |+++|++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|+++++++
T Consensus       255 ~~~e~l~~l~d~~~s~i----s~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~gy~~~l~~m~~~~~~~  329 (339)
T 4ev6_A          255 TYREVLTSMMDITLSLE----NIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN-NPQGFWLVMALMVVIIMIF  329 (339)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS-CTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc-CchHHHHHHHHHHHHHHHH
Confidence            99999999999999998    799999999999999999999999999999999999999 9999999999999887764


Q ss_pred             HHHHHHHhhccCCc
Q 008601          493 IAVGLLYLGLKKPI  506 (560)
Q Consensus       493 ~~~~l~y~~~k~~~  506 (560)
                          +.||++|+|+
T Consensus       330 ----~~~fkrk~WL  339 (339)
T 4ev6_A          330 ----VYIFRRSGWI  339 (339)
T ss_dssp             ----HHHHHTTTCC
T ss_pred             ----HHHHHHcCCC
Confidence                4578999985

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.1e-32  Score=276.48  Aligned_cols=230  Identities=14%  Similarity=0.107  Sum_probs=196.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccc
Q 008601          178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI  257 (560)
Q Consensus       178 ~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~  257 (560)
                      .+..++|||+.+|+++++++|++.|||||++++|+++.++    |||      ++.+++++|++++.+.. +++  ..  
T Consensus        46 ~d~~~vWIdl~~Pt~eEl~~l~~~f~lh~l~leD~l~~~~----rpK------ie~~~d~~fivl~~~~~-~~~--~~--  110 (280)
T 4egw_A           46 EDYRLIWIDCYDPKDEELYKLSKKIGISVSDLQIGLDEQE----IPR------VEEDEDFYLIIYKAPLF-EED--IT--  110 (280)
T ss_dssp             TSSSCEEEEEESCCHHHHHHHHHHHTCCHHHHHHHTCTTC----CCE------EECCSSSEEEEEEEEEC-SSS--CE--
T ss_pred             CCCeEEEEEeCCCCHHHHHHHHHHHCcCHHHHHHHhCccc----Cce------EEEECCEEEEEEEeccc-ccc--ce--
Confidence            4456889999999999999999999999999999999986    688      89999999999998765 221  11  


Q ss_pred             cEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008601          258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV--PRTVHEVIAHLACRLSRWDDRLFRKTIFGAADE  335 (560)
Q Consensus       258 t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~--~~s~~~Ll~~Lld~lid~~~~~~le~ie~~lde  335 (560)
                      +.+++||+++++||||++.       +...++.+++++..++...  ..++..++++|++.++|.|.+ +++.+++++++
T Consensus       111 t~~v~i~l~~~~lITv~~~-------~~~~~~~v~~~l~~~~~~~~~~~g~~~ll~~lld~ivd~y~~-~l~~i~~~id~  182 (280)
T 4egw_A          111 TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSR-ILMNLEDELEE  182 (280)
T ss_dssp             EEEEEEEEETTEEEEEESS-------CCHHHHHHHHHHHHSCCSSSCTTTTTHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             eeeEEEEEECCEEEEEecC-------CcchHHHHHHHHHhcCcccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            5899999999999999996       6889999999998765221  356889999999999999999 99999999999


Q ss_pred             HHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHH
Q 008601          336 IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQE  412 (560)
Q Consensus       336 LE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~le  412 (560)
                      ||++++..+.++        .+.+|+.+||+++++||++.|+++++..|.+   ....++.+.||+|+++|+.++.+.++
T Consensus       183 lE~~l~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~dh~~~~~e~~~  254 (280)
T 4egw_A          183 LEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSA  254 (280)
T ss_dssp             HHHHTTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCchh--------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999876532        4679999999999999999999999999985   23467889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          413 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTH  442 (560)
Q Consensus       413 alre~l~~L~D~~~S~vs~~~n~r~N~vMK  442 (560)
                      .+++.+..++|+|.|.+    |++||++||
T Consensus       255 ~~re~l~~l~d~~~s~i----s~~~N~iMK  280 (280)
T 4egw_A          255 TYREVLTSMMDITLSLE----NIKMNQIMK  280 (280)
T ss_dssp             HHHHHHHHHHHHHHHHC----C--------
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHhhC
Confidence            99999999999999999    799999998

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*

Probab=99.97  E-value=1.3e-30  Score=259.90  Aligned_cols=218  Identities=16%  Similarity=0.206  Sum_probs=190.0

Q ss_pred             EEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECC-EEEEEEeccccCCCCCCcccccEEE
Q 008601          183 WWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAG-GLLFELLGQSAGDPFVDEDDIPIVL  261 (560)
Q Consensus       183 ~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d-~lfiiL~~~~~~~~~~e~~d~t~~L  261 (560)
                      +|||+..|++++++||++. ||||++++++++.++    |||      ++.+++ ++|++++++.. ++...+.+ ++++
T Consensus        32 ~Wi~l~~p~~~e~~~l~~~-~l~~l~~ed~l~~~~----rpk------~e~~~d~~lfivl~~~~~-~~~~~~~~-~~~l   98 (252)
T 3ck6_A           32 HWYHCERLHPDIRGWLEDN-HVPRATVDHLLADES----RPS------FHPLDDDNFMLILRGINM-NENASPED-MLSI   98 (252)
T ss_dssp             EEEEEETTCTTHHHHHHHT-TCCHHHHHHHHCSSC----CCE------EEECSTTCEEEEEEECCC-STTCCTTS-CEEE
T ss_pred             EEEEecCCCHHHHHHHHHc-CCCHHHHHHHhCCCC----CCc------eEEeCCceEEEEEecCcc-CCCCCccc-EEEE
Confidence            7999999999999999999 999999999999987    688      899999 99999999876 33322333 4899


Q ss_pred             EEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 008601          262 RSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFV  341 (560)
Q Consensus       262 ~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~v~  341 (560)
                      +||+++++|||+++.       +...++.+++++.+++  .+.++.+++++|++.++|.|.+ +++.+++++++||++  
T Consensus        99 ~i~l~~~~lITvr~~-------~~~~~~~v~~~l~~~~--~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~--  166 (252)
T 3ck6_A           99 RILYFQGALISTRKI-------PSRAIMEIRQALAEHK--GPKSLASLLNQIIEGLNGKIDL-YLDTIEETLNEFDVN--  166 (252)
T ss_dssp             EEEEETTEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCCTT--
T ss_pred             EEEEeCCEEEEEeCC-------CcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC--
Confidence            999999999999996       6889999999998875  5678999999999999999999 999999999999987  


Q ss_pred             cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          342 NRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LRGNVARTLLEGIRKNAREMIEEQEAVRGRLF  419 (560)
Q Consensus       342 ~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~--l~~~~~~~~L~dI~d~~~rlle~lealre~l~  419 (560)
                      .    +        .+.+|+.+||+++++||++.|+++++.+|.+.  ...++.+.||+|+++|+.++.+.++++++++.
T Consensus       167 ~----~--------~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~  234 (252)
T 3ck6_A          167 D----E--------STYNHIAAQKALISIKRFIRPQQYAIRDLIESESELVTSRPHQYRFAHNNITRINETIEFYLGEVA  234 (252)
T ss_dssp             C----G--------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c----h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    1        23589999999999999999999999999851  13457789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008601          420 TIQDVMQSTVRAWLQDRSLRVT  441 (560)
Q Consensus       420 ~L~D~~~S~vs~~~n~r~N~vM  441 (560)
                      .++|.|++.+    +++||++|
T Consensus       235 ~l~d~~~s~~----s~~~N~~m  252 (252)
T 3ck6_A          235 LFQDEIKHNR----DEKTNKNS  252 (252)
T ss_dssp             HHHHHHHHHH----HHC-----
T ss_pred             HHHHHHHHHH----HHHHccCC
Confidence            9999999999    79999987

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A

Probab=99.97  E-value=2.6e-30  Score=259.23  Aligned_cols=219  Identities=18%  Similarity=0.263  Sum_probs=187.6

Q ss_pred             CCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccE
Q 008601          180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPI  259 (560)
Q Consensus       180 ~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~  259 (560)
                      +.++|||+..|++++++||.+.|||||++++++++.++    |||      ++.+++++|++++.+.. ++..+..+ +.
T Consensus        40 ~~~~Wi~l~~p~~~e~~~l~~~~~l~~l~~ed~~~~~~----rpk------~e~~~~~~fivl~~~~~-~~~~~~~~-~~  107 (264)
T 3nvo_A           40 QHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESS----RPR------VSRMGEGTLITLRCING-STDERPDQ-LV  107 (264)
T ss_dssp             TSCEEEEEETTSHHHHHHHHHCTTSCTTTHHHHTTCCC----SCE------EEEETTEEEEEEECC------------CC
T ss_pred             CCCEEEEeCCCCHHHHHHHHhccCCCHHHHHHHhCCCC----CCc------eEEECCEEEEEEEeccc-CCCCCCcc-eE
Confidence            34789999999999999999999999999999999886    688      89999999999998876 33322223 48


Q ss_pred             EEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008601          260 VLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELK  339 (560)
Q Consensus       260 ~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~  339 (560)
                      +++||+++++|||+++.       +...++.+++++.+++  .+.++..++++|++.++|.|.+ +++.+++++++||+.
T Consensus       108 ~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~--~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~  177 (264)
T 3nvo_A          108 AMRLYMDERFIVSTRQR-------KVLALDDVVSDLQEGT--GPVDCGGWLVDVCDALTDHASE-FIEELHDKIIDLEDN  177 (264)
T ss_dssp             EEEEEECSSEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCEEEEEecC-------CcCcHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            99999999999999996       6889999999999886  5678999999999999999999 999999999999999


Q ss_pred             hhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          340 FVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVRG  416 (560)
Q Consensus       340 v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~lealre  416 (560)
                      ++.. .+..        +.+|+.+||+++++||++.|+++++.+|.+   ....++.+.||+|+.+|+.++++.++++++
T Consensus       178 l~~~-~~~~--------l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re  248 (264)
T 3nvo_A          178 LLDQ-QIPP--------RGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIA  248 (264)
T ss_dssp             -----CCCC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcC-Cchh--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9977 4332        469999999999999999999999999985   234678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 008601          417 RLFTIQDVMQSTV  429 (560)
Q Consensus       417 ~l~~L~D~~~S~v  429 (560)
                      ++..++|.|+|.+
T Consensus       249 ~l~~l~d~~~s~~  261 (264)
T 3nvo_A          249 RTGIMADEIAQVM  261 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888776

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1

Probab=99.94  E-value=1.4e-25  Score=225.46  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=151.0

Q ss_pred             CCeEEEEecCC-CHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccccc
Q 008601          180 GPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP  258 (560)
Q Consensus       180 ~~~~WIdl~~p-t~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t  258 (560)
                      +.++|||+..| ++++++||.+.||||+++++++++.++    |||      ++.+++++|++++.+.. ++...... +
T Consensus        60 ~~~~Wi~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~~~----rpk------~e~~~d~lfivl~~~~~-~~~~~~~~-~  127 (269)
T 2bbh_A           60 STPTWINITGIHRTDVVQRVGEFFGTHPLVLEDILNVHQ----RPK------VEFFENYVFIVLKMFTY-DKNLHELE-S  127 (269)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHTCCHHHHHHHHCTTC----CCE------EEECSSEEEEEEEEEEC-CC--CCCE-E
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHcCCCHhHHHHHhCcCC----Cce------EEEECCEEEEEEEeeee-cCCcCcee-E
Confidence            35789999998 899999999999999999999999887    688      89999999999998865 32211112 4


Q ss_pred             EEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601          259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVG-GYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE  337 (560)
Q Consensus       259 ~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g-~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE  337 (560)
                      .+++||+++++|||+++.       +...++.+++++.++ +.....++..++++|++.++|.|.+ +++.+++++++||
T Consensus       128 ~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE  199 (269)
T 2bbh_A          128 EQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLE  199 (269)
T ss_dssp             EEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEECC-------CCCcHHHHHHHHHhcCCchhhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            899999999999999996       577889999999887 3112357778999999999999999 9999999999999


Q ss_pred             HHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHH
Q 008601          338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQE  412 (560)
Q Consensus       338 ~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~le  412 (560)
                      ++++..+.+.        .+.+|+.+||+++++|+++.|+++++.+|.+   .+..++.+.||+|+++|+.++.+.++
T Consensus       200 ~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~dh~~r~~e~~e  269 (269)
T 2bbh_A          200 EEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVE  269 (269)
T ss_dssp             HCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred             HHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999875432        3579999999999999999999999999985   33466888999999999999988754

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}

Probab=99.93  E-value=5.8e-25  Score=220.96  Aligned_cols=198  Identities=12%  Similarity=0.073  Sum_probs=171.4

Q ss_pred             CCCeEEEEecCC-CHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccc
Q 008601          179 AGPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI  257 (560)
Q Consensus       179 ~~~~~WIdl~~p-t~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~  257 (560)
                      .+.++|||+..| ++++++||.+.||||+++++++++.++    |||      ++.+++++|++++.+.. ++  .. . 
T Consensus        64 ~~~~~Wi~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~~~----rpk------~e~~~d~lfivl~~~~~-~~--~~-~-  128 (266)
T 2hn1_A           64 LNKKLWIDVVGVHDESLIAKICEFLGIHPLAAEDILNTAQ----RVK------IEDYDDHLFLVLKILLY-NE--TL-E-  128 (266)
T ss_dssp             TTSEEEEEECCCCCHHHHHHHHHTTTCCHHHHHHHHBTTC----CSE------EEECSSEEEEEEEEEEE-SS--SE-E-
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHcCCCHhHHHHHhCCCC----CCe------EEEECCEEEEEEEeccc-cC--cc-c-
Confidence            345889999998 899999999999999999999999887    688      89999999999998865 32  21 2 


Q ss_pred             cEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601          258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE  337 (560)
Q Consensus       258 t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE  337 (560)
                      +.+++||+++++|||+++.       +...++.+++++.+++.....++..++++|++.++|.|.+ +++.+++++++||
T Consensus       129 ~~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE  200 (266)
T 2hn1_A          129 IDQLSLVLKKNLVATFEER-------EYWILDSIRSRLKSGGRMRKLAGDYLAYTILDAVVDSYFE-ALLKISDEIEVLE  200 (266)
T ss_dssp             EEEEEEEEETTEEEEEESS-------SSCSTHHHHHHHHSSSHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCEEEEEEcC-------CCChHHHHHHHHHhCCchhhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4899999999999999996       6778899999998763111267888999999999999999 9999999999999


Q ss_pred             HHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHH
Q 008601          338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMI  408 (560)
Q Consensus       338 ~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rll  408 (560)
                      ++++..+. ..        +.+|+.+||+++++|+++.|+++++.+|.+   .+..++.+.||+|+.+|+.+++
T Consensus       201 ~~l~~~~~-~~--------l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~dh~~r~~  265 (266)
T 2hn1_A          201 DEVVSGDS-TL--------IGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHELIGEEVKVYYRDVYDHAVRLM  265 (266)
T ss_dssp             HHHHTTTC-CC--------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCTTSCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHhcCcH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHh
Confidence            99998764 32        468999999999999999999999999985   2345688899999999999875

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=95.25  E-value=1.4  Score=45.64  Aligned_cols=60  Identities=13%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601          403 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG  462 (560)
Q Consensus       403 ~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyG  462 (560)
                      .++.+.+.+..+.+.++.+.|...+++...++...|+.=.++-++|++-+...-.|=+-|
T Consensus       262 ~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaG  321 (363)
T 2iub_A          262 YFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAG  321 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444444444444444444444444444444444444444

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=94.84  E-value=0.88  Score=46.65  Aligned_cols=124  Identities=9%  Similarity=0.084  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601          356 LNQEIRRLSRQVIRVKWSLHAREEIVFEL-----YQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVR  430 (560)
Q Consensus       356 ~l~~I~~LRr~li~Lrr~L~~~revl~~L-----~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs  430 (560)
                      +.+++..+|+.+...+..+......-...     ...+.  +....+..+.+.+..+-+.+..+.+...++.+   ..+ 
T Consensus       202 lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~--dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is---~~~-  275 (339)
T 4ev6_A          202 LRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFE--DLYYDTLQLIDMSATYREVLTSMMDITLSLEN---IKM-  275 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-
Confidence            34567777777777776665444321111     11121  22222334445555555555555554444433   232 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 008601          431 AWLQDRSLRVTHNLAVFGGCGVVLTVITGL-F-GINVDGIPGADNTPYAFGLFTAILFFIGVVL  492 (560)
Q Consensus       431 ~~~n~r~N~vMK~LTVvSaIFLPLTfIaGi-y-GMNF~~MPel~~~pyGy~i~l~imvlia~vl  492 (560)
                          |+.-+++-++|++-+...-+|=|-|+ | ||-+-+-|..  +++. ++++++++++.++.
T Consensus       276 ----N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~g--y~~~-l~~m~~~~~~~~~~  332 (339)
T 4ev6_A          276 ----NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQG--FWLV-MALMVVIIMIFVYI  332 (339)
T ss_dssp             ----HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTH--HHHH-HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchH--HHHH-HHHHHHHHHHHHHH
Confidence                33445666777777777777778887 3 5866656643  4444 44444444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	560
d2iuba2	64	f.17.3.1 (A:286-349) Magnesium transport protein C	4e-07

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 444 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAV 495
           L +     + LT I G++G+N + +P      + + +  A++  I V+++  
Sbjct: 9   LTIIATIFMPLTFIAGIYGMNFEYMPELRW-KWGYPVVLAVMGVIAVIMVVY 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	560
d2bbha1	232	Magnesium transport protein CorA, soluble domain {	99.92
d2iuba2	64	Magnesium transport protein CorA {Thermotoga marit	99.8

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CorA soluble domain-like
superfamily: CorA soluble domain-like
family: CorA soluble domain-like
domain: Magnesium transport protein CorA, soluble domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.4e-24  Score=208.48  Aligned_cols=182  Identities=15%  Similarity=0.082  Sum_probs=151.8

Q ss_pred             CCCCCeEEEEecCCC-HHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcc
Q 008601          177 RPAGPVWWCHMLAGH-PSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDED  255 (560)
Q Consensus       177 ~~~~~~~WIdl~~pt-~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~  255 (560)
                      .+.+.++|||+.+++ ++++++|.+.|||||++++||+++++    |||      ++.+++++|++++.+.. +.+....
T Consensus        42 ~~~~~~~Widi~~~~~~e~l~~l~~~f~i~~l~led~l~~~~----rpk------~e~~~~~~fiil~~~~~-~~~~~~~  110 (232)
T d2bbha1          42 RDSSTPTWINITGIHRTDVVQRVGEFFGTHPLVLEDILNVHQ----RPK------VEFFENYVFIVLKMFTY-DKNLHEL  110 (232)
T ss_dssp             GGCSSCEEEEEECTTCHHHHHHHHHHHTCCHHHHHHHHCTTC----CCE------EEECSSEEEEEEEEEEC-CC--CCC
T ss_pred             cCCCCcEEEEeCCCCCHHHHHHHHHHcCcCHhHHHHHhCccc----CCc------eEEeCCEEEEEEEeecc-cCCCCcc
Confidence            355668899999986 67799999999999999999999987    688      89999999999999876 3332222


Q ss_pred             cccEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008601          256 DIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN-VPRTVHEVIAHLACRLSRWDDRLFRKTIFGAAD  334 (560)
Q Consensus       256 d~t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~-~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ld  334 (560)
                      + +.+++||+++++|||+|+.       +...++.+++++..+... ...+++.+++.|++.+++.|.+ +++.++++++
T Consensus       111 ~-~~~l~i~l~~~~lITv~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id  181 (232)
T d2bbha1         111 E-SEQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEID  181 (232)
T ss_dssp             E-EEEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             e-eEEEEEEEECCEEEEEecC-------CCchHHHHHHHHHhCccccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            2 4899999999999999996       688899999999876522 2357899999999999999999 9999999999


Q ss_pred             HHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008601          335 EIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ  386 (560)
Q Consensus       335 eLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~  386 (560)
                      +||+.++.++++.        .+++|+.+||+++++||.+.|+++++..|.+
T Consensus       182 ~lE~~v~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~revl~~L~r  225 (232)
T d2bbha1         182 VLEEEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYR  225 (232)
T ss_dssp             HHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCcHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999876433        3579999999999999999999999999985

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.5e-20  Score=148.93  Aligned_cols=64  Identities=23%  Similarity=0.458  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008601          436 RSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK  504 (560)
Q Consensus       436 r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~  504 (560)
                      |+|++||+||++|+||+|+|+|||+|||||++||+.+ +|||||+++++++++++++    +.|+++||
T Consensus         1 r~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~-~~~~~~~~~~~~~~~~~~~----~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR-WKWGYPVVLAVMGVIAVIM----VVYFKKKK   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHHH----HTTTTSCC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-ccHHHHHHHHHHHHHHHHH----HHHHhccC
Confidence            6899999999999999999999999999999999999 9999999999888766543    34455544