Citrus Sinensis ID: 008603
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 560 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPQ8 | 729 | Monosaccharide-sensing pr | yes | no | 0.914 | 0.702 | 0.737 | 0.0 | |
| Q9SD00 | 729 | Monosaccharide-sensing pr | no | no | 0.892 | 0.685 | 0.598 | 1e-167 | |
| Q96290 | 734 | Monosaccharide-sensing pr | no | no | 0.9 | 0.686 | 0.571 | 1e-155 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.360 | 0.442 | 0.381 | 5e-34 | |
| Q9ZQP6 | 580 | Probable inositol transpo | no | no | 0.403 | 0.389 | 0.390 | 2e-33 | |
| Q9C757 | 580 | Probable inositol transpo | no | no | 0.387 | 0.374 | 0.386 | 4e-32 | |
| O23492 | 582 | Inositol transporter 4 OS | no | no | 0.405 | 0.390 | 0.370 | 3e-31 | |
| P94493 | 471 | Putative metabolite trans | no | no | 0.405 | 0.481 | 0.351 | 8e-30 | |
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | no | no | 0.348 | 0.361 | 0.363 | 9e-30 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.387 | 0.470 | 0.355 | 1e-29 |
| >sp|Q8LPQ8|MSSP2_ARATH Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/533 (73%), Positives = 450/533 (84%), Gaps = 21/533 (3%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVAIAAA+GNLLQGWDNATIAGAVLYIK+EF+LE+ P++EGLIVAMSLIGAT IT
Sbjct: 1 MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLESNPSVEGLIVAMSLIGATLIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSG +ADWLGRRPMLI+SS+LYF+G LVMLWSPNVYVLLL RLLDGFG+GL VTLVPIY
Sbjct: 61 TCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRGLLNTLPQFTG GMFL+YCMVFGMSLM +PSWRLMLGVLFIPSL++F L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMPSPSWRLMLGVLFIPSLVFFFL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+F+LPESPRWLVSKGRMLEAK+VLQ LRGREDV+GEMALLVEGLG+GGET++EEYIIGP
Sbjct: 181 TVFFLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGEMALLVEGLGIGGETTIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRH--------GSMVDPL 292
A+++ D DI+ DKDQIKLYG EEGLSW+ARPV G S + + SRH GS++DPL
Sbjct: 241 ADEVTDDHDIAVDKDQIKLYGAEEGLSWVARPVKGGSTMSVLSRHGSTMSRRQGSLIDPL 300
Query: 293 VTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGG 352
VTLFGSVHEK+PD GSMRS LFPHFGSMFSVGGNQPR+E+WDEE+LV EG++YPSD G
Sbjct: 301 VTLFGSVHEKMPDTGSMRSALFPHFGSMFSVGGNQPRHEDWDEENLVGEGEDYPSD-HGD 359
Query: 353 DSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGE-PVGMGIGGGWQLAW 411
DS+D+L SPLISRQTTS+EKDM AHGTLS+ RHGSQVQG GE MGIGGGWQ+AW
Sbjct: 360 DSEDDLHSPLISRQTTSMEKDMPHTAHGTLSTFRHGSQVQGAQGEGAGSMGIGGGWQVAW 419
Query: 412 KWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAAL 471
KW+E+E G+KE EG P S RGS+VS+ G D + VQA+ALVSQ AL
Sbjct: 420 KWTEREDESGQKE----------EGFPGSRRGSIVSLPGGDGTGEADFVQASALVSQPAL 469
Query: 472 CSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
SK+LL ++ IGPAM+HPSET KG W DL +PGVKRAL+VGVG+QILQQ +
Sbjct: 470 YSKDLLKEHTIGPAMVHPSET-TKGSIWHDLHDPGVKRALVVGVGLQILQQFS 521
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SD00|MSSP3_ARATH Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/545 (59%), Positives = 383/545 (70%), Gaps = 45/545 (8%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M LVA+AAAIGN+LQGWDNATIAGAV+YIK+EFHLE EP IEGLIVAMSLIGAT IT
Sbjct: 1 MRSVVLVALAAAIGNMLQGWDNATIAGAVIYIKKEFHLEKEPKIEGLIVAMSLIGATLIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
T SG ++D +GRR MLI+SSVLYF+ +VM WSPNVYVLL ARLLDGFGIGLAVTLVPIY
Sbjct: 61 TFSGPVSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVPIY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAP EIRGLLNT PQF G GMFL+YC+VFGMSL +PSWRLMLGVL IPS+ YFVL
Sbjct: 121 ISETAPSEIRGLLNTFPQFCGSGGMFLSYCLVFGMSLQESPSWRLMLGVLSIPSIAYFVL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
F+LPESPRWLVSKGRM EA++VLQ LRGREDV+GE+ALLVEGLGVG +TS+EEY+IGP
Sbjct: 181 AAFFLPESPRWLVSKGRMDEARQVLQRLRGREDVSGELALLVEGLGVGKDTSIEEYVIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMV-------DPLV 293
N+ + KDQIKLYGPE+G SW+A+PV GQS + L SR GSM+ DPLV
Sbjct: 241 DNEENEGGNELPRKDQIKLYGPEDGQSWMAKPVKGQSSLALASRQGSMLPRGGSLMDPLV 300
Query: 294 TLFGSVHEKLPDQG---SMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAA 350
TLFGS+HE LP + S RS LFP+ GS+ + G Q +WD E ++
Sbjct: 301 TLFGSIHENLPSENMNASSRSMLFPNMGSILGMMGRQ--ESQWDPER---------NNED 349
Query: 351 GGDSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGE-PVGMGIGGGWQL 409
D D+NL SPL+S QTT + D GT+ R S N GE IGGGWQL
Sbjct: 350 SSDQDENLNSPLLSPQTTEPD-DYHQRTVGTMHR-RQSSLFMANVGETATATSIGGGWQL 407
Query: 410 AWKWSEKEGRDGKK-EGGFKRIYLHQE-------GVPASHRGSLVSMH----GEDVPVGG 457
AWK+++K G DGK+ GG +R+Y+H+E +P S RGSL+S H G D G
Sbjct: 408 AWKYNDKVGADGKRVNGGLQRMYIHEETANNNTNNIPFSRRGSLLSFHPEGDGHDQVNG- 466
Query: 458 EVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGI 517
VQAAALVSQA++ G + P E G W++L EPGVKRALMVGVG+
Sbjct: 467 -YVQAAALVSQASMMP------GGKGETAMLPKEV-KDGPGWRELKEPGVKRALMVGVGL 518
Query: 518 QILQQ 522
QILQQ
Sbjct: 519 QILQQ 523
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q96290|MSSP1_ARATH Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/544 (57%), Positives = 388/544 (71%), Gaps = 40/544 (7%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVA+AA IGN LQGWDNATIAGA++YI ++ +L T +++GL+VAMSLIGAT IT
Sbjct: 1 MKGATLVALAATIGNFLQGWDNATIAGAMVYINKDLNLPT--SVQGLVVAMSLIGATVIT 58
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSG I+DWLGRRPMLI+SSV+YF+ GL+MLWSPNVYVL ARLL+GFG GLAVTLVP+Y
Sbjct: 59 TCSGPISDWLGRRPMLILSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAGLAVTLVPVY 118
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRG LNTLPQF G GMFL+YCMVF MSL +PSWR MLGVL IPSL+Y L
Sbjct: 119 ISETAPPEIRGQLNTLPQFLGSGGMFLSYCMVFTMSLSDSPSWRAMLGVLSIPSLLYLFL 178
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+FYLPESPRWLVSKGRM EAK+VLQ L GREDV EMALLVEGL +GGE ++E+ ++
Sbjct: 179 TVFYLPESPRWLVSKGRMDEAKRVLQQLCGREDVTDEMALLVEGLDIGGEKTMEDLLVTL 238
Query: 241 ANDLAADQDISADKD-QIKLYGPEEGLSWIARPVTGQ-SIVGLGSRHGSMV-------DP 291
+ D + D+D Q++LYG E S++ARPV Q S +GL SRHGS+ DP
Sbjct: 239 EDHEGDDTLETVDEDGQMRLYGTHENQSYLARPVPEQNSSLGLRSRHGSLANQSMILKDP 298
Query: 292 LVTLFGSVHEKLPDQ-GSMRSTLFPHFGSMFSVGGNQPRNE--EWD---EESLVREGDEY 345
LV LFGS+HEK+P+ G+ RS +FPHFGSMFS + P + W+ E ++ D+Y
Sbjct: 299 LVNLFGSLHEKMPEAGGNTRSGIFPHFGSMFSTTADAPHGKPAHWEKDIESHYNKDNDDY 358
Query: 346 PS---DAAGGDSDDNLQSPLISRQTTSIEKDMVP-PAHG-TLSSMRHGSQVQGNAGEPVG 400
+ DSD++L+SPL+SRQTTS++KDM+P P G TLS RH + +QGN GE
Sbjct: 359 ATDDGAGDDDDSDNDLRSPLMSRQTTSMDKDMIPHPTSGSTLSMRRHSTLMQGN-GES-S 416
Query: 401 MGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVV 460
MGIGGGW + +++ E +KR YL ++G S RGS++S+ G GG +
Sbjct: 417 MGIGGGWHMGYRYENDE---------YKRYYLKEDGA-ESRRGSIISIPGGP-DGGGSYI 465
Query: 461 QAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQIL 520
A+ALVS++ L K + G AM+ P + AA G W L EPGVKRAL+VGVGIQIL
Sbjct: 466 HASALVSRSVLGPKSVH-----GSAMVPPEKIAASGPLWSALLEPGVKRALVVGVGIQIL 520
Query: 521 QQVT 524
QQ +
Sbjct: 521 QQFS 524
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Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 132/207 (63%), Gaps = 5/207 (2%)
Query: 12 AIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG 71
A+G L G+D I+GA+L++K+E L EGL+V+ L+GA + +G + D G
Sbjct: 14 ALGGALYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFG 71
Query: 72 RRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRG 131
R+ ++ +++L+ IGGL + +PN V++L R++ G +G + T+VP+Y+SE AP RG
Sbjct: 72 RKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRG 131
Query: 132 LLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191
L++L Q VG+ L+Y + + + A +WR MLG+ +PSL+ ++ I ++PESPRW
Sbjct: 132 ALSSLNQLMITVGILLSYIVNYIFA--DAEAWRWMLGLAAVPSLL-LLIGILFMPESPRW 188
Query: 192 LVSKGRMLEAKKVLQSLRGREDVAGEM 218
L + G +AKK+L+ LRG +D+ E+
Sbjct: 189 LFTNGEESKAKKILEKLRGTKDIDQEI 215
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 139/233 (59%), Gaps = 7/233 (3%)
Query: 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREF-HLETEPTIEGLIVAMSLIGATCITTCSGA 65
+A++A IG LL G++ IAGA+LYIK EF ++ + ++ +IV+M++ GA G
Sbjct: 29 LALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGW 88
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125
D GRR ++++ VL+ +G LVM+ + +V++L RLL GFG+G+A P+YISE +
Sbjct: 89 YNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMS 148
Query: 126 PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLGVLFIPSLIYFVLTIFY 184
P IRG L + G FL+Y + ++ + P +WR MLGV IP++I F L +
Sbjct: 149 PARIRGALVSTNGLLITGGQFLSY--LINLAFVHTPGTWRWMLGVSAIPAIIQFCL-MLT 205
Query: 185 LPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYI 237
LPESPRWL R E++ +L+ + E V E+A L E V ET+ E+ I
Sbjct: 206 LPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKE--SVRAETADEDII 256
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Plasma membrane inositol-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 134/220 (60%), Gaps = 3/220 (1%)
Query: 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFH-LETEPTIEGLIVAMSLIGATCITTCSGA 65
+A +A IG LL G+D I+GA+LYI+ +F ++ ++ +IV+M++ GA G
Sbjct: 31 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGW 90
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125
D LGRR ++++ L+ +G ++M +PN +L++ R+ G G+G+A P+YISE +
Sbjct: 91 ANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEAS 150
Query: 126 PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYL 185
P +IRG L + F G FL+Y + + +T +WR MLG+ IP+L+ FVL +F L
Sbjct: 151 PAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTG-TWRWMLGIAGIPALLQFVL-MFTL 208
Query: 186 PESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGL 225
PESPRWL KGR EAK +L+ + EDV E+ L + +
Sbjct: 209 PESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSV 248
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Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 142/235 (60%), Gaps = 8/235 (3%)
Query: 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREF-HLETEPTIEGLIVAMSLIGATCITTCSGA 65
+A++A IG LL G+D I+GA+L+IK +F ++ + ++ IV+M++ GA G
Sbjct: 30 LALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGW 89
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125
I D GRR ++++ VL+ IG +VM ++P +V+++ R+ GFG+G+A P+YISE +
Sbjct: 90 INDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEAS 149
Query: 126 PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLGVLFIPSLIYFVLTIFY 184
P IRG L + G F +Y + ++ + P +WR MLGV +P+++ FVL +
Sbjct: 150 PARIRGALVSTNGLLITGGQFFSY--LINLAFVHTPGTWRWMLGVAGVPAIVQFVL-MLS 206
Query: 185 LPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIG 239
LPESPRWL K R+ E++ +L+ + ++V EM L L V E + +E IIG
Sbjct: 207 LPESPRWLYRKDRIAESRAILERIYPADEVEAEMEAL--KLSVEAEKA-DEAIIG 258
|
Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol. Arabidopsis thaliana (taxid: 3702) |
| >sp|P94493|YNCC_BACSU Putative metabolite transport protein YncC OS=Bacillus subtilis (strain 168) GN=yncC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 6/233 (2%)
Query: 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGA 65
L+ I+A G LL G+D I GA+ ++ R L+ P EGL+ ++ L+GA G
Sbjct: 13 LIMISATFGGLLFGYDTGVINGALPFMARPDQLDLTPVTEGLVTSILLLGAAFGALLCGR 72
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125
+AD GRR M++ S L+F+ L +PNV+++ + R L G +G A +VP +++E A
Sbjct: 73 LADRYGRRKMILNLSFLFFLASLGTALAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMA 132
Query: 126 PPEIRGLLNTLPQFTGCVGMFLAYCM--VFGMSLM-TAPSWRLMLGVLFIPSLIYFVLTI 182
P E RG + T + G FLAY + G+++ T WR ML + +P+++ F ++
Sbjct: 133 PHEKRGRMVTQNELMIVGGQFLAYVFNAILGVTMANTGHVWRYMLVICAVPAIMLFA-SM 191
Query: 183 FYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEE 235
+PESPRWL+SKG+ EA +VL+ +R + E + E V +T+LE+
Sbjct: 192 LKVPESPRWLISKGKNSEALRVLKQIREDKRAEAECREIQE--AVEKDTALEK 242
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 121/201 (60%), Gaps = 6/201 (2%)
Query: 8 AIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCS-GAI 66
AI A++ ++L G+D ++GA++YIKR+ + ++ I+A SL + I +C+ G
Sbjct: 40 AILASMTSILLGYDIGVMSGAMIYIKRDLKIND---LQIGILAGSLNIYSLIGSCAAGRT 96
Query: 67 ADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAP 126
+DW+GRR ++++ ++F G ++M SPN L+ R + G G+G A+ + P+Y +E +P
Sbjct: 97 SDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSP 156
Query: 127 PEIRGLLNTLPQFTGCVGMFLAYCMVFGMS-LMTAPSWRLMLGVLFIPSLIYFVLTIFYL 185
RG LN+ P+ G+ L Y S L WRLMLG+ +PS+I + + +
Sbjct: 157 ASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVI-LAIGVLAM 215
Query: 186 PESPRWLVSKGRMLEAKKVLQ 206
PESPRWLV +GR+ +AK+VL
Sbjct: 216 PESPRWLVMQGRLGDAKRVLD 236
|
Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 12 AIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG 71
A+G LL G+D I+GA+L+I + L T EGL+V+M L+GA + SG +D G
Sbjct: 15 ALGGLLYGYDTGVISGALLFINNDIPLTTLT--EGLVVSMLLLGAIFGSALSGTCSDRWG 72
Query: 72 RRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRG 131
RR ++ V S+++ IG L +S + +L+ +R++ G +G + LVP+Y+SE AP +IRG
Sbjct: 73 RRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132
Query: 132 LLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191
L T+ G+ LAY + + + A WR M+G+ +P+++ ++ I ++PESPRW
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA--WRWMVGLAAVPAVL-LLIGIAFMPESPRW 189
Query: 192 LVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSL 233
LV +G EA++++ +D+ E+A + +G ET+L
Sbjct: 190 LVKRGSEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTL 231
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 560 | ||||||
| 255559173 | 740 | sugar transporter, putative [Ricinus com | 0.935 | 0.708 | 0.825 | 0.0 | |
| 224102781 | 740 | predicted protein [Populus trichocarpa] | 0.932 | 0.705 | 0.801 | 0.0 | |
| 356516107 | 730 | PREDICTED: monosaccharide-sensing protei | 0.933 | 0.716 | 0.777 | 0.0 | |
| 356516105 | 738 | PREDICTED: monosaccharide-sensing protei | 0.933 | 0.708 | 0.777 | 0.0 | |
| 449475697 | 733 | PREDICTED: monosaccharide-sensing protei | 0.925 | 0.706 | 0.787 | 0.0 | |
| 449444423 | 733 | PREDICTED: monosaccharide-sensing protei | 0.925 | 0.706 | 0.785 | 0.0 | |
| 225428316 | 739 | PREDICTED: monosaccharide-sensing protei | 0.933 | 0.707 | 0.764 | 0.0 | |
| 401063425 | 739 | tonoplastic transporter 2 [Vitis vinifer | 0.933 | 0.707 | 0.764 | 0.0 | |
| 225428318 | 731 | PREDICTED: monosaccharide-sensing protei | 0.933 | 0.715 | 0.764 | 0.0 | |
| 147853377 | 739 | hypothetical protein VITISV_042076 [Viti | 0.933 | 0.707 | 0.762 | 0.0 |
| >gi|255559173|ref|XP_002520608.1| sugar transporter, putative [Ricinus communis] gi|223540207|gb|EEF41781.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/532 (82%), Positives = 482/532 (90%), Gaps = 8/532 (1%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVA+AAA+GNLLQGWDNATIAGAVLYIKREF+LE+EPTIEGLIVA SLIGAT IT
Sbjct: 1 MSGAVLVAVAAAVGNLLQGWDNATIAGAVLYIKREFNLESEPTIEGLIVATSLIGATLIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSGAI+DWLGRRPMLI+SSVLYF+ G+VMLWSPNVY+LLLARLLDGFGIGLAVTLVP+Y
Sbjct: 61 TCSGAISDWLGRRPMLIISSVLYFLSGVVMLWSPNVYILLLARLLDGFGIGLAVTLVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRGLLNTLPQFTG GMFL+YCMVFGMSL TAPSWRLMLGVLFIPSLIY L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLTTAPSWRLMLGVLFIPSLIYLAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+FYLPESPRWLVSKGRMLEAK+VLQ LRGREDV+GEMALLVEGLGVGGETS+EEYIIGP
Sbjct: 181 TLFYLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGEMALLVEGLGVGGETSIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGS-------MVDPLV 293
AN++ DQDIS DKD +KLYGPEEGLSW+A+PVTGQS +GL SR GS ++DPLV
Sbjct: 241 ANEVVDDQDISVDKDHVKLYGPEEGLSWVAKPVTGQSTIGLVSRRGSLANQSMPLMDPLV 300
Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
TLFGSVHEKLP+ GSMRS LFPHFGSMFSVGGNQ RNEEWDEES REG++Y SDA GGD
Sbjct: 301 TLFGSVHEKLPETGSMRSMLFPHFGSMFSVGGNQARNEEWDEESQTREGEDYQSDAGGGD 360
Query: 354 SDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWK 412
SDDNL+SPLISRQTTS++KD+VP AHG+LSSMRHGS +QGNAGEPVG GIGGGWQLAWK
Sbjct: 361 SDDNLESPLISRQTTSMDKDLVPHAHGSLSSMRHGSLMQGNAGEPVGSAGIGGGWQLAWK 420
Query: 413 WSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALC 472
WSE+EG+DGKKEGGFKRIYLHQEGVP S RGSLVS+HG D P GE +QAAALVSQ AL
Sbjct: 421 WSEREGQDGKKEGGFKRIYLHQEGVPGSRRGSLVSLHGGDAPAEGEFIQAAALVSQPALF 480
Query: 473 SKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
SKEL++Q+P+GPAMIHPSETAAKG SW DL EPGVK AL+VGVG+QILQQ +
Sbjct: 481 SKELVNQHPVGPAMIHPSETAAKGPSWNDLFEPGVKHALVVGVGLQILQQFS 532
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102781|ref|XP_002312798.1| predicted protein [Populus trichocarpa] gi|222849206|gb|EEE86753.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/530 (80%), Positives = 471/530 (88%), Gaps = 8/530 (1%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVA+AAAIGNLLQGWDNATIAGAVLYIKREFHLE+EPTIEGLIVA SL+GAT IT
Sbjct: 1 MNGAVLVAVAAAIGNLLQGWDNATIAGAVLYIKREFHLESEPTIEGLIVATSLVGATLIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSG I+D LGRRP+LI+SS+LYF+ GLVMLWSPNVYVLLLARLLDGFGIGLAVTLVP+Y
Sbjct: 61 TCSGPISDCLGRRPLLIISSILYFVSGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRGLLNTLPQFTG GMFL+YCMVFGMSLM APSWR+MLGVLFIPS+IYF+L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMEAPSWRVMLGVLFIPSIIYFLL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+F+LPESPRWLVSKGRMLEAKKVLQ LRGREDV+GE+ALLVEGLGVG + S+EEYIIGP
Sbjct: 181 TVFFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGELALLVEGLGVGTDISIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM-------VDPLV 293
AND D DI+ADKD IKLYGPE+G SW+ARPV+GQS +GL SRHGSM +DPLV
Sbjct: 241 ANDFTDDHDIAADKDHIKLYGPEQGHSWVARPVSGQSAIGLASRHGSMANQSLALMDPLV 300
Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
TLFGSVHEKLP+QGSMRS LFPHFGSMFSVGGN PRNE+WDEES R+G++Y SD A GD
Sbjct: 301 TLFGSVHEKLPEQGSMRSMLFPHFGSMFSVGGNHPRNEDWDEESQARDGEDYASDGAAGD 360
Query: 354 SDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWK 412
SDDNLQSPLISRQ TS++KDMVPPAHG++SSMRHGS + GNAG+PVG GIGGGWQLAWK
Sbjct: 361 SDDNLQSPLISRQATSMDKDMVPPAHGSMSSMRHGSLITGNAGDPVGNTGIGGGWQLAWK 420
Query: 413 WSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALC 472
WSE+EG+DGKKEGGFKRIYLHQEG P S RGSLVS+ G D E +QAAALVSQ+AL
Sbjct: 421 WSEREGQDGKKEGGFKRIYLHQEGAPGSRRGSLVSLTGADAHADSEYIQAAALVSQSALY 480
Query: 473 SKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQ 522
KEL+++NP GPAM+HPSET AKG SW+DL EPGVK AL VGVGIQILQQ
Sbjct: 481 PKELVNENPAGPAMVHPSETVAKGPSWRDLFEPGVKHALAVGVGIQILQQ 530
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516107|ref|XP_003526738.1| PREDICTED: monosaccharide-sensing protein 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/531 (77%), Positives = 466/531 (87%), Gaps = 8/531 (1%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVA+AAAIGNLLQGWDNATIAG++LYIK+EF LE EPT+EGLIVAMSLIGAT +T
Sbjct: 1 MSGAVLVAVAAAIGNLLQGWDNATIAGSILYIKKEFQLENEPTVEGLIVAMSLIGATVVT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSGA++D LGRRPMLI+SS+LYF+ LVMLWSPNVY+LL ARLLDG GIGLAVTLVP+Y
Sbjct: 61 TCSGALSDLLGRRPMLIISSMLYFVSSLVMLWSPNVYILLFARLLDGLGIGLAVTLVPLY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRGLLNTLPQFTG +GMF +YCMVFGMSLM APSWR+MLGVL IPSLI+F L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSLGMFFSYCMVFGMSLMKAPSWRIMLGVLSIPSLIFFAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+ +LPESPRWLVSKGRMLEAKKVLQ LRGREDV+GEMALLVEGLGVGG+T++EEYIIGP
Sbjct: 181 TLLFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLVEGLGVGGDTAIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM------VDPLVT 294
AN+L ++D S +KDQIKLYGPE+G SW+ARPV GQ+ VGL SR GSM VDPLVT
Sbjct: 241 ANEL-DEEDQSREKDQIKLYGPEQGQSWVARPVAGQNSVGLVSRKGSMVNQSGLVDPLVT 299
Query: 295 LFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDS 354
LFGS+HEK P+ GSMRSTLFPHFGSMFSVGGNQPRNE+WDEESL REGD+Y SDAA GDS
Sbjct: 300 LFGSIHEKHPETGSMRSTLFPHFGSMFSVGGNQPRNEDWDEESLAREGDDYVSDAAAGDS 359
Query: 355 DDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWKW 413
DDNLQSPLISRQTTS++KD+ PPAH LSSMR GS + GNAGEP G GIGGGWQLAWKW
Sbjct: 360 DDNLQSPLISRQTTSMDKDITPPAHSNLSSMRQGSLLHGNAGEPTGSTGIGGGWQLAWKW 419
Query: 414 SEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCS 473
SE+E DGKKEGGF+RIYLHQ+G S RGS+VS+ G D+P GEVVQAAALVS++AL +
Sbjct: 420 SERESPDGKKEGGFQRIYLHQDGGSGSRRGSVVSLPGGDLPTDGEVVQAAALVSRSALYN 479
Query: 474 KELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
K+L+ Q P+GPAMIHPSET AKG SW DL EPGVK AL+VGVG+QILQQ +
Sbjct: 480 KDLMCQRPVGPAMIHPSETIAKGPSWSDLFEPGVKHALIVGVGMQILQQFS 530
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516105|ref|XP_003526737.1| PREDICTED: monosaccharide-sensing protein 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/531 (77%), Positives = 466/531 (87%), Gaps = 8/531 (1%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVA+AAAIGNLLQGWDNATIAG++LYIK+EF LE EPT+EGLIVAMSLIGAT +T
Sbjct: 1 MSGAVLVAVAAAIGNLLQGWDNATIAGSILYIKKEFQLENEPTVEGLIVAMSLIGATVVT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSGA++D LGRRPMLI+SS+LYF+ LVMLWSPNVY+LL ARLLDG GIGLAVTLVP+Y
Sbjct: 61 TCSGALSDLLGRRPMLIISSMLYFVSSLVMLWSPNVYILLFARLLDGLGIGLAVTLVPLY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRGLLNTLPQFTG +GMF +YCMVFGMSLM APSWR+MLGVL IPSLI+F L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSLGMFFSYCMVFGMSLMKAPSWRIMLGVLSIPSLIFFAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+ +LPESPRWLVSKGRMLEAKKVLQ LRGREDV+GEMALLVEGLGVGG+T++EEYIIGP
Sbjct: 181 TLLFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLVEGLGVGGDTAIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM------VDPLVT 294
AN+L ++D S +KDQIKLYGPE+G SW+ARPV GQ+ VGL SR GSM VDPLVT
Sbjct: 241 ANEL-DEEDQSREKDQIKLYGPEQGQSWVARPVAGQNSVGLVSRKGSMVNQSGLVDPLVT 299
Query: 295 LFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDS 354
LFGS+HEK P+ GSMRSTLFPHFGSMFSVGGNQPRNE+WDEESL REGD+Y SDAA GDS
Sbjct: 300 LFGSIHEKHPETGSMRSTLFPHFGSMFSVGGNQPRNEDWDEESLAREGDDYVSDAAAGDS 359
Query: 355 DDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWKW 413
DDNLQSPLISRQTTS++KD+ PPAH LSSMR GS + GNAGEP G GIGGGWQLAWKW
Sbjct: 360 DDNLQSPLISRQTTSMDKDITPPAHSNLSSMRQGSLLHGNAGEPTGSTGIGGGWQLAWKW 419
Query: 414 SEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCS 473
SE+E DGKKEGGF+RIYLHQ+G S RGS+VS+ G D+P GEVVQAAALVS++AL +
Sbjct: 420 SERESPDGKKEGGFQRIYLHQDGGSGSRRGSVVSLPGGDLPTDGEVVQAAALVSRSALYN 479
Query: 474 KELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
K+L+ Q P+GPAMIHPSET AKG SW DL EPGVK AL+VGVG+QILQQ +
Sbjct: 480 KDLMCQRPVGPAMIHPSETIAKGPSWSDLFEPGVKHALIVGVGMQILQQFS 530
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475697|ref|XP_004154526.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/531 (78%), Positives = 464/531 (87%), Gaps = 13/531 (2%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M G+ LVA+AAA+GNLLQGWDNATIAGAVLYIK+EF+LE+ PT+EGLIVA SLIGAT IT
Sbjct: 1 MSGSVLVAVAAAVGNLLQGWDNATIAGAVLYIKKEFNLESSPTVEGLIVATSLIGATVIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSGAI+DWLGRR +LI+SSVLYFIGG++MLWSPNVY+LLL RLLDGFGIGLAVTLVP+Y
Sbjct: 61 TCSGAISDWLGRRLLLILSSVLYFIGGIIMLWSPNVYILLLGRLLDGFGIGLAVTLVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRG LNTLPQFTG GMF +YCMVFGMSLM +PSWRLMLGVLFIPSLIY L
Sbjct: 121 ISETAPPEIRGSLNTLPQFTGSAGMFFSYCMVFGMSLMESPSWRLMLGVLFIPSLIYLAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
TIF+LPESPRWLVSKGRMLEAK+VLQ LRGREDV+GE+ALLVEGLGVGGETSLEEYIIGP
Sbjct: 181 TIFFLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGELALLVEGLGVGGETSLEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGS------MVDPLVT 294
A+DL DQD+ DKD IKLYGPE+G+SW+ARPVTGQS +GL SRHGS +VDPLVT
Sbjct: 241 ADDL-PDQDLLTDKDGIKLYGPEQGVSWVARPVTGQSSIGLVSRHGSIINQSGLVDPLVT 299
Query: 295 LFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDS 354
LFGSVHEKLPD GSMRSTLFPHFGSMFSVGGNQ RNEEWDEESL REG++Y SD AG DS
Sbjct: 300 LFGSVHEKLPDTGSMRSTLFPHFGSMFSVGGNQHRNEEWDEESLAREGEDYQSDGAGNDS 359
Query: 355 DDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWKW 413
DDNL+SPLISRQTTS+EKDMV PAHG+LSSMR GS AGEPVG MGIGGGWQLAWKW
Sbjct: 360 DDNLRSPLISRQTTSMEKDMVAPAHGSLSSMRQGSL----AGEPVGSMGIGGGWQLAWKW 415
Query: 414 SEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCS 473
SE+EG DG KEGGFKR+YLHQEG+ +GS+VS+ G D G +QAAALVSQ AL S
Sbjct: 416 SEREGPDGNKEGGFKRVYLHQEGISGPQQGSIVSLPGGDALTDGGYIQAAALVSQPALYS 475
Query: 474 KELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
KEL+ Q+P+GPAM+HP E+ KG SW DL EPGVK AL+VGVGIQILQQ +
Sbjct: 476 KELMSQHPVGPAMVHP-ESVTKGPSWVDLFEPGVKHALLVGVGIQILQQFS 525
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444423|ref|XP_004139974.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/531 (78%), Positives = 463/531 (87%), Gaps = 13/531 (2%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M G+ LVA+AAA+GN LQGWDNATIAGAVLYIK+EF+LE+ PT+EGLIVA SLIGAT IT
Sbjct: 1 MSGSVLVAVAAAVGNFLQGWDNATIAGAVLYIKKEFNLESSPTVEGLIVATSLIGATVIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
TCSGAI+DWLGRR +LI+SSVLYFIGG++MLWSPNVY+LLL RLLDGFGIGLAVTLVP+Y
Sbjct: 61 TCSGAISDWLGRRLLLILSSVLYFIGGIIMLWSPNVYILLLGRLLDGFGIGLAVTLVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAPPEIRG LNTLPQFTG GMF +YCMVFGMSLM +PSWRLMLGVLFIPSLIY L
Sbjct: 121 ISETAPPEIRGSLNTLPQFTGSAGMFFSYCMVFGMSLMESPSWRLMLGVLFIPSLIYLAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
TIF+LPESPRWLVSKGRMLEAK+VLQ LRGREDV+GE+ALLVEGLGVGGETSLEEYIIGP
Sbjct: 181 TIFFLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGELALLVEGLGVGGETSLEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGS------MVDPLVT 294
A+DL DQD+ DKD IKLYGPE+G+SW+ARPVTGQS +GL SRHGS +VDPLVT
Sbjct: 241 ADDL-PDQDLLTDKDGIKLYGPEQGVSWVARPVTGQSSIGLVSRHGSIINQSGLVDPLVT 299
Query: 295 LFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDS 354
LFGSVHEKLPD GSMRSTLFPHFGSMFSVGGNQ RNEEWDEESL REG++Y SD AG DS
Sbjct: 300 LFGSVHEKLPDTGSMRSTLFPHFGSMFSVGGNQHRNEEWDEESLAREGEDYQSDGAGNDS 359
Query: 355 DDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWKW 413
DDNL+SPLISRQTTS+EKDMV PAHG+LSSMR GS AGEPVG MGIGGGWQLAWKW
Sbjct: 360 DDNLRSPLISRQTTSMEKDMVAPAHGSLSSMRQGSL----AGEPVGSMGIGGGWQLAWKW 415
Query: 414 SEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCS 473
SE+EG DG KEGGFKR+YLHQEG+ +GS+VS+ G D G +QAAALVSQ AL S
Sbjct: 416 SEREGPDGNKEGGFKRVYLHQEGISGPQQGSIVSLPGGDALTDGGYIQAAALVSQPALYS 475
Query: 474 KELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
KEL+ Q+P+GPAM+HP E+ KG SW DL EPGVK AL+VGVGIQILQQ +
Sbjct: 476 KELMSQHPVGPAMVHP-ESVTKGPSWVDLFEPGVKHALLVGVGIQILQQFS 525
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428316|ref|XP_002282975.1| PREDICTED: monosaccharide-sensing protein 2 isoform 1 [Vitis vinifera] gi|310877834|gb|ADP37148.1| putative tonoplastic monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/534 (76%), Positives = 465/534 (87%), Gaps = 11/534 (2%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVAIAAA+GNLLQGWDNATIAGAVLYIK+EF+L+ EPT+EGLIVAMSLIGAT IT
Sbjct: 1 MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLQGEPTVEGLIVAMSLIGATFIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
T SGA++DWLGRRPMLI+SS+ YF+ GLVMLWSPNVYVLLLARLLDGFG+GL+VT+VP+Y
Sbjct: 61 TISGAVSDWLGRRPMLIISSLFYFVSGLVMLWSPNVYVLLLARLLDGFGVGLSVTIVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAP EIRGLLNTLPQFTG VGMFL+YCMVFGMSLM +PSWRLMLGVLFIPSL+Y L
Sbjct: 121 ISETAPSEIRGLLNTLPQFTGSVGMFLSYCMVFGMSLMNSPSWRLMLGVLFIPSLVYLAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+F LPESPRWLVSKGRMLEAK VLQ LRGREDV+GEMALLVEGLGVG + S+EEYIIGP
Sbjct: 181 TVFLLPESPRWLVSKGRMLEAKHVLQRLRGREDVSGEMALLVEGLGVGSKASIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM-------VDPLV 293
+DL DQD +A D+I+LYGP+EGLSWIA+PVTGQS +GL SR GSM +DPLV
Sbjct: 241 -DDLTDDQDPAAMNDRIRLYGPQEGLSWIAKPVTGQSSLGLVSRCGSMENKPVPLMDPLV 299
Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
TLFGSVHEKLP+ GSMRS +FP+F SMFS+ GNQP+NEE DEESL R+G++YPSDAAGGD
Sbjct: 300 TLFGSVHEKLPETGSMRSVIFPNFSSMFSISGNQPKNEESDEESLARDGEDYPSDAAGGD 359
Query: 354 SDDNLQSPLISRQTTSIEKDMVP-PAHGTLSSMRHGSQVQGNAGEPV--GMGIGGGWQLA 410
SDDNLQSPLISRQ TS+EKD++P P + SMRH S ++ + GE V MGIGGGWQLA
Sbjct: 360 SDDNLQSPLISRQNTSLEKDLMPAPTQSSNLSMRHSSLMRADGGEQVSSSMGIGGGWQLA 419
Query: 411 WKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAA 470
WKWSEKEG+DGKKEGGFKRIYLHQ+ +P S RGSLVS+ G +VPV GE+ AAALVSQ A
Sbjct: 420 WKWSEKEGQDGKKEGGFKRIYLHQDSIPRSQRGSLVSVPGGEVPVDGEMTCAAALVSQPA 479
Query: 471 LCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
L SKEL+DQNP+GPAM+HPSETA KG SW+DL +PGVK AL+VGVGIQILQQ +
Sbjct: 480 LYSKELMDQNPVGPAMVHPSETAIKGPSWRDLFKPGVKHALVVGVGIQILQQFS 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|401063425|gb|AFP89954.1| tonoplastic transporter 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/534 (76%), Positives = 465/534 (87%), Gaps = 11/534 (2%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVAIAAA+GNLLQGWDNATIAGAVLYIK+EF+L+ EPT+EGLIVAMSLIGAT IT
Sbjct: 1 MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLQGEPTVEGLIVAMSLIGATFIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
T SGA++DWLGRRPMLI+SS+ YF+ GLVMLWSPNVYVLLLARLLDGFG+GL+VT+VP+Y
Sbjct: 61 TISGAVSDWLGRRPMLIISSLFYFVSGLVMLWSPNVYVLLLARLLDGFGVGLSVTIVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAP EIRGLLNTLPQFTG VGMFL+YCMVFGMSLM +PSWRLMLGVLFIPSL+Y L
Sbjct: 121 ISETAPSEIRGLLNTLPQFTGSVGMFLSYCMVFGMSLMNSPSWRLMLGVLFIPSLVYLAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+F LPESPRWLVSKGRMLEAK VLQ LRGREDV+GEMALLVEGLGVG + S+EEYIIGP
Sbjct: 181 TVFLLPESPRWLVSKGRMLEAKHVLQRLRGREDVSGEMALLVEGLGVGSKASIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM-------VDPLV 293
+DL DQD +A D+I+LYGP+EGLSWIA+PVTGQS +GL SR GSM +DPLV
Sbjct: 241 -DDLTDDQDPAAMNDRIRLYGPQEGLSWIAKPVTGQSSLGLVSRCGSMENKPVPLMDPLV 299
Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
TLFGSVHEKLP+ GSMRS +FP+F SMFS+ GNQP+NEE DEESL R+G++YPSDAAGGD
Sbjct: 300 TLFGSVHEKLPETGSMRSVIFPNFSSMFSISGNQPKNEESDEESLARDGEDYPSDAAGGD 359
Query: 354 SDDNLQSPLISRQTTSIEKDMVP-PAHGTLSSMRHGSQVQGNAGEPV--GMGIGGGWQLA 410
SDDNLQSPLISRQ TS+EKD++P P + SMRH S ++ + GE V MGIGGGWQLA
Sbjct: 360 SDDNLQSPLISRQNTSLEKDLMPAPTQSSNLSMRHSSLMRADGGEQVSSSMGIGGGWQLA 419
Query: 411 WKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAA 470
WKWSEKEG+DGKKEGGFKRIYLHQ+ +P S RGSLVS+ G +VPV GE+ AAALVSQ A
Sbjct: 420 WKWSEKEGQDGKKEGGFKRIYLHQDSIPRSQRGSLVSVPGGEVPVDGEMTCAAALVSQPA 479
Query: 471 LCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
L SKEL+DQNP+GPAM+HPSETA KG SW+DL +PGVK AL+VGVGIQILQQ +
Sbjct: 480 LYSKELMDQNPVGPAMVHPSETAIKGPSWRDLFKPGVKHALVVGVGIQILQQFS 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428318|ref|XP_002282981.1| PREDICTED: monosaccharide-sensing protein 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/534 (76%), Positives = 465/534 (87%), Gaps = 11/534 (2%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVAIAAA+GNLLQGWDNATIAGAVLYIK+EF+L+ EPT+EGLIVAMSLIGAT IT
Sbjct: 1 MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLQGEPTVEGLIVAMSLIGATFIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
T SGA++DWLGRRPMLI+SS+ YF+ GLVMLWSPNVYVLLLARLLDGFG+GL+VT+VP+Y
Sbjct: 61 TISGAVSDWLGRRPMLIISSLFYFVSGLVMLWSPNVYVLLLARLLDGFGVGLSVTIVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAP EIRGLLNTLPQFTG VGMFL+YCMVFGMSLM +PSWRLMLGVLFIPSL+Y L
Sbjct: 121 ISETAPSEIRGLLNTLPQFTGSVGMFLSYCMVFGMSLMNSPSWRLMLGVLFIPSLVYLAL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+F LPESPRWLVSKGRMLEAK VLQ LRGREDV+GEMALLVEGLGVG + S+EEYIIGP
Sbjct: 181 TVFLLPESPRWLVSKGRMLEAKHVLQRLRGREDVSGEMALLVEGLGVGSKASIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM-------VDPLV 293
+DL DQD +A D+I+LYGP+EGLSWIA+PVTGQS +GL SR GSM +DPLV
Sbjct: 241 -DDLTDDQDPAAMNDRIRLYGPQEGLSWIAKPVTGQSSLGLVSRCGSMENKPVPLMDPLV 299
Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
TLFGSVHEKLP+ GSMRS +FP+F SMFS+ GNQP+NEE DEESL R+G++YPSDAAGGD
Sbjct: 300 TLFGSVHEKLPETGSMRSVIFPNFSSMFSISGNQPKNEESDEESLARDGEDYPSDAAGGD 359
Query: 354 SDDNLQSPLISRQTTSIEKDMVP-PAHGTLSSMRHGSQVQGNAGEPV--GMGIGGGWQLA 410
SDDNLQSPLISRQ TS+EKD++P P + SMRH S ++ + GE V MGIGGGWQLA
Sbjct: 360 SDDNLQSPLISRQNTSLEKDLMPAPTQSSNLSMRHSSLMRADGGEQVSSSMGIGGGWQLA 419
Query: 411 WKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAA 470
WKWSEKEG+DGKKEGGFKRIYLHQ+ +P S RGSLVS+ G +VPV GE+ AAALVSQ A
Sbjct: 420 WKWSEKEGQDGKKEGGFKRIYLHQDSIPRSQRGSLVSVPGGEVPVDGEMTCAAALVSQPA 479
Query: 471 LCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
L SKEL+DQNP+GPAM+HPSETA KG SW+DL +PGVK AL+VGVGIQILQQ +
Sbjct: 480 LYSKELMDQNPVGPAMVHPSETAIKGPSWRDLFKPGVKHALVVGVGIQILQQFS 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853377|emb|CAN80213.1| hypothetical protein VITISV_042076 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/534 (76%), Positives = 464/534 (86%), Gaps = 11/534 (2%)
Query: 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
M GA LVAIAAA+GNLLQGWDNATIAGAVLYIK+EF+L+ EPT+EGLIVAMSLIGAT IT
Sbjct: 1 MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLQGEPTVEGLIVAMSLIGATFIT 60
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
T SGA++DWLGRRPMLI+SS+ YF+ GLVMLWSPNVYVLLLARLLDGFG+GL+VT+VP+Y
Sbjct: 61 TISGAVSDWLGRRPMLIISSLFYFVSGLVMLWSPNVYVLLLARLLDGFGVGLSVTIVPVY 120
Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
ISETAP EIRGLLNTLPQFTG VGMFL+YCMVFGMSLM +PSWRLMLGVLFIPSL+Y L
Sbjct: 121 ISETAPSEIRGLLNTLPQFTGSVGMFLSYCMVFGMSLMNSPSWRLMLGVLFIPSLVYLXL 180
Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
T+F LPESPRWLVSKGRMLEAK VLQ LRGREDV+GEMALLVEGLGVG + S+EEYIIGP
Sbjct: 181 TVFLLPESPRWLVSKGRMLEAKHVLQRLRGREDVSGEMALLVEGLGVGSKASIEEYIIGP 240
Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM-------VDPLV 293
+DL DQD +A D+I+LYGP+EGLSWIA+PVTGQS +GL SR GSM +DPLV
Sbjct: 241 -DDLTDDQDPAAMNDRIRLYGPQEGLSWIAKPVTGQSSLGLVSRCGSMENKPVPLMDPLV 299
Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
TLFGSVHEKLP+ GSMRS +FP+F SMFS+ GNQP+NEE DEESL R+G++YPSDAAGGD
Sbjct: 300 TLFGSVHEKLPETGSMRSVIFPNFSSMFSISGNQPKNEESDEESLARDGEDYPSDAAGGD 359
Query: 354 SDDNLQSPLISRQTTSIEKDMVP-PAHGTLSSMRHGSQVQGNAGEPV--GMGIGGGWQLA 410
SDDNLQSPLISRQ TS+EKD++P P + SMRH S ++ + GE V MGIGGGWQLA
Sbjct: 360 SDDNLQSPLISRQNTSLEKDLMPAPTQSSNLSMRHSSLMRADGGEQVSSSMGIGGGWQLA 419
Query: 411 WKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAA 470
WKWSEK G+DGKKEGGFKRIYLHQ+ +P S RGSLVS+ G +VPV GE+ AAALVSQ A
Sbjct: 420 WKWSEKXGQDGKKEGGFKRIYLHQDSIPRSQRGSLVSVPGGEVPVDGEMTCAAALVSQPA 479
Query: 471 LCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVT 524
L SKEL+DQNP+GPAM+HPSETA KG SW+DL +PGVK AL+VGVGIQILQQ +
Sbjct: 480 LYSKELMDQNPVGPAMVHPSETAIKGPSWRDLFKPGVKHALVVGVGIQILQQFS 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 560 | ||||||
| TAIR|locus:2030377 | 734 | TMT1 "tonoplast monosaccharide | 0.869 | 0.663 | 0.524 | 6.8e-127 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.353 | 0.341 | 0.388 | 1.6e-34 | |
| UNIPROTKB|E9PE47 | 357 | SLC2A13 "Proton myo-inositol c | 0.348 | 0.546 | 0.355 | 1.1e-33 | |
| TAIR|locus:2130689 | 582 | INT4 "inositol transporter 4" | 0.351 | 0.338 | 0.361 | 1e-31 | |
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 0.326 | 0.359 | 0.405 | 3.7e-31 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.333 | 0.403 | 0.359 | 1.9e-30 | |
| TAIR|locus:2058774 | 580 | INT3 "nositol transporter 3" [ | 0.353 | 0.341 | 0.384 | 3.7e-30 | |
| MGI|MGI:2146030 | 637 | Slc2a13 "solute carrier family | 0.348 | 0.306 | 0.355 | 5.9e-30 | |
| ZFIN|ZDB-GENE-090812-1 | 546 | slc2a13b "solute carrier famil | 0.348 | 0.357 | 0.35 | 1.4e-29 | |
| RGD|621814 | 637 | Slc2a13 "solute carrier family | 0.348 | 0.306 | 0.355 | 1.5e-29 |
| TAIR|locus:2030377 TMT1 "tonoplast monosaccharide transporter1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
Identities = 279/532 (52%), Positives = 345/532 (64%)
Query: 18 QGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77
QGWDNATIAGA++YI ++ +L T +++GL+VAMSLIGAT ITTCSG I+DWLGRRPMLI
Sbjct: 18 QGWDNATIAGAMVYINKDLNLPT--SVQGLVVAMSLIGATVITTCSGPISDWLGRRPMLI 75
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
+SSV+YF+ GL+MLWSPNVYVL ARLL+GFG GLAVTLVP+YISETAPPEIRG LNTLP
Sbjct: 76 LSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAGLAVTLVPVYISETAPPEIRGQLNTLP 135
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
QF G GMFL+YCMVF MSL +PSWR MLGVL IPSL+Y LT+FYLPESPRWLVSKGR
Sbjct: 136 QFLGSGGMFLSYCMVFTMSLSDSPSWRAMLGVLSIPSLLYLFLTVFYLPESPRWLVSKGR 195
Query: 198 MLEAKKVLQSLRGREDVAGEMAXXXXXXXXXXXXXXXXYIIGPANDLAADQDI-SADKD- 255
M EAK+VLQ L GREDV EMA ++ D D + + D+D
Sbjct: 196 MDEAKRVLQQLCGREDVTDEMALLVEGLDIGGEKTMEDLLV-TLEDHEGDDTLETVDEDG 254
Query: 256 QIKLYGPEEGLSWIARPVTGQ-SIVGLGSRHGSMV-------DPLVTLFGSVHEKLPDQG 307
Q++LYG E S++ARPV Q S +GL SRHGS+ DPLV LFGS+HEK+P+ G
Sbjct: 255 QMRLYGTHENQSYLARPVPEQNSSLGLRSRHGSLANQSMILKDPLVNLFGSLHEKMPEAG 314
Query: 308 -SMRSTLFPHFGSMFSVGGNQPRNE--EWD---EESLVREGDEYPSDAAGGDSDDN---L 358
+ RS +FPHFGSMFS + P + W+ E ++ D+Y +D GD DD+ L
Sbjct: 315 GNTRSGIFPHFGSMFSTTADAPHGKPAHWEKDIESHYNKDNDDYATDDGAGDDDDSDNDL 374
Query: 359 QSPLISRQTTSIEKDMVPPAHGTLSSM--RHGSQVQGNAGEPVGMGIGGGWQLAWKWSXX 416
+SPL+SRQTTS++KDM+P H T S MGIGGGW + +++
Sbjct: 375 RSPLMSRQTTSMDKDMIP--HPTSGSTLSMRRHSTLMQGNGESSMGIGGGWHMGYRYEND 432
Query: 417 XXXXXXXXXXXXRIYLHQEGVPASHRGSLVSMHGEDVPVGGEXXXXXXXXXXXXXCSKEL 476
R YL ++G S RGS++S+ G P GG S+ +
Sbjct: 433 EYK---------RYYLKEDGAE-SRRGSIISIPGG--PDGG-----GSYIHASALVSRSV 475
Query: 477 LDQNPI-GPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQVTYGI 527
L + G AM+ P + AA G W L EPGVKRAL+VGVGIQILQQ + GI
Sbjct: 476 LGPKSVHGSAMVPPEKIAASGPLWSALLEPGVKRALVVGVGIQILQQFS-GI 526
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 78/201 (38%), Positives = 123/201 (61%)
Query: 19 GWDNATIAGAVLYIKREFH-LETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77
G+D I+GA+LYI+ +F ++ ++ +IV+M++ GA G D LGRR ++
Sbjct: 43 GYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAIL 102
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++ L+ +G ++M +PN +L++ R+ G G+G+A P+YISE +P +IRG L +
Sbjct: 103 MADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTN 162
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
F G FL+Y + + +T +WR MLG+ IP+L+ FVL +F LPESPRWL KGR
Sbjct: 163 GFLITGGQFLSYLINLAFTDVTG-TWRWMLGIAGIPALLQFVL-MFTLPESPRWLYRKGR 220
Query: 198 MLEAKKVLQSLRGREDVAGEM 218
EAK +L+ + EDV E+
Sbjct: 221 EEEAKAILRRIYSAEDVEQEI 241
|
|
| UNIPROTKB|E9PE47 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 71/200 (35%), Positives = 116/200 (58%)
Query: 19 GWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSG-AIADWLGRRPMLI 77
G+D ++GA+L +KR+ L+ + L+V+ S +GA ++ +G A+ GRR ++
Sbjct: 96 GYDTGVVSGAMLLLKRQLSLDA--LWQELLVS-STVGAAAVSALAGGALNGVFGRRAAIL 152
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++S L+ G V+ + N LL RL+ G GIG+A VP+YI+E +PP +RG L T+
Sbjct: 153 LASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTIN 212
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
G F A + S + WR MLG+ +P++I F +F LPESPRWL+ KG+
Sbjct: 213 TLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLF-LPESPRWLIQKGQ 271
Query: 198 MLEAKKVLQSLRGREDVAGE 217
+A+++L +RG + + E
Sbjct: 272 TQKARRILSQMRGNQTIDEE 291
|
|
| TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 73/202 (36%), Positives = 123/202 (60%)
Query: 19 GWDNATIAGAVLYIKREF-HLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77
G+D I+GA+L+IK +F ++ + ++ IV+M++ GA G I D GRR ++
Sbjct: 42 GYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSIL 101
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++ VL+ IG +VM ++P +V+++ R+ GFG+G+A P+YISE +P IRG L +
Sbjct: 102 IADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTN 161
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKG 196
G F +Y + ++ + P +WR MLGV +P+++ FVL + LPESPRWL K
Sbjct: 162 GLLITGGQFFSY--LINLAFVHTPGTWRWMLGVAGVPAIVQFVLMLS-LPESPRWLYRKD 218
Query: 197 RMLEAKKVLQSLRGREDVAGEM 218
R+ E++ +L+ + ++V EM
Sbjct: 219 RIAESRAILERIYPADEVEAEM 240
|
|
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 3.7e-31, Sum P(2) = 3.7e-31
Identities = 77/190 (40%), Positives = 118/190 (62%)
Query: 19 GWDNATIAGAVLYIKREFHLETEPT-IEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77
G+D I+GA+LYIK +F + + + ++ IV+M+L+GA G I D+ GR+ +
Sbjct: 46 GYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATL 105
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRG-LLNT- 135
+ V++ G +VM +P+ YVL+ RLL G G+G+A P+YI+E +P E+RG L++T
Sbjct: 106 FADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTN 165
Query: 136 LPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSK 195
+ TG G FL+Y +V +WR MLGV +P++I F+L +F +PESPRWL K
Sbjct: 166 VLMITG--GQFLSY-LVNSAFTQVPGTWRWMLGVSGVPAVIQFILMLF-MPESPRWLFMK 221
Query: 196 GRMLEAKKVL 205
R EA +VL
Sbjct: 222 NRKAEAIQVL 231
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 69/192 (35%), Positives = 115/192 (59%)
Query: 19 GWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIV 78
G+D I+GA+L+I +EFHL P + G +V+ LIGA SG +AD++GR+ +LI+
Sbjct: 32 GYDTGVISGAILFISQEFHLS--PQMNGFVVSAVLIGAFLGALFSGHLADYIGRKRLLII 89
Query: 79 SSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQ 138
++++ +G + + ++ L++ R++ G IG+A P+YISE +PP RG L +L Q
Sbjct: 90 DALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASYSAPLYISEISPPHRRGALVSLNQ 149
Query: 139 FTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRM 198
+G+FL+Y + + + A WR M IP+ + +L + LP SPRW+ S+G
Sbjct: 150 LAVTIGIFLSYVVDYYFARHDA--WRSMFAAGVIPAAL-LLLGMIVLPYSPRWIFSRGHE 206
Query: 199 LEAKKVLQSLRG 210
+A +L+ LRG
Sbjct: 207 EKALWILRKLRG 218
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| TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 78/203 (38%), Positives = 121/203 (59%)
Query: 19 GWDNATIAGAVLYIKREF-HLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77
G++ IAGA+LYIK EF ++ + ++ +IV+M++ GA G D GRR ++
Sbjct: 41 GYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVL 100
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++ VL+ +G LVM+ + +V++L RLL GFG+G+A P+YISE +P IRG L +
Sbjct: 101 IADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTN 160
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKG 196
G FL+Y + ++ + P +WR MLGV IP++I F L + LPESPRWL
Sbjct: 161 GLLITGGQFLSY--LINLAFVHTPGTWRWMLGVSAIPAIIQFCLMLT-LPESPRWLYRND 217
Query: 197 RMLEAKKVLQSLRGREDVAGEMA 219
R E++ +L+ + E V E+A
Sbjct: 218 RKAESRDILERIYPAEMVEAEIA 240
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| MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 5.9e-30, Sum P(3) = 5.9e-30
Identities = 71/200 (35%), Positives = 114/200 (57%)
Query: 19 GWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSG-AIADWLGRRPMLI 77
G+D ++GA+L ++R+ L + L+V+ +GA + +G A+ LGRR ++
Sbjct: 85 GYDTGVVSGAMLLLRRQMRLGA--MWQELLVS-GAVGAAAVAALAGGALNGALGRRSAIL 141
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++S L +G V+ + N LL RL+ G GIG+A VP+YI+E +PP +RG L T+
Sbjct: 142 LASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTIN 201
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
G F A + S + WR MLG+ IP++I F L +LPESPRWL+ KG+
Sbjct: 202 TLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQF-LGFLFLPESPRWLIQKGQ 260
Query: 198 MLEAKKVLQSLRGREDVAGE 217
+A+++L +RG + + E
Sbjct: 261 TQKARRILSQMRGNQTIDEE 280
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| ZFIN|ZDB-GENE-090812-1 slc2a13b "solute carrier family 2 (facilitated glucose transporter), member 13b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 70/200 (35%), Positives = 115/200 (57%)
Query: 19 GWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLI 77
G+D ++GA+L +KRE L + + L+V+++ +GA ++ +G + GRR ++
Sbjct: 50 GYDTGVVSGAMLLLKREKKLSS--VWQELLVSIT-VGAAAVSALAGGFLNGRFGRRVCIL 106
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++S ++ GG+++ + N LL RL G G+G+A VP+YI+E +PP++RG L T+
Sbjct: 107 LASFIFCAGGIILSVARNKEALLCGRLTVGLGLGIASMTVPVYIAEVSPPDLRGQLVTVN 166
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
G F+A + S + WR MLG+ +P+ + F L +LPESPRWL+ KG
Sbjct: 167 TLFITGGQFIASVVDGAFSYLPHDGWRFMLGLSVVPAALQF-LGFLFLPESPRWLLQKGF 225
Query: 198 MLEAKKVLQSLRGREDVAGE 217
A VL+ +RG DV E
Sbjct: 226 TQNALLVLRQIRGDVDVEEE 245
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| RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 71/200 (35%), Positives = 114/200 (57%)
Query: 19 GWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSG-AIADWLGRRPMLI 77
G+D ++GA+L ++R+ L + L+V+ +GA + +G A+ LGRR ++
Sbjct: 85 GYDTGVVSGAMLLLRRQMRLGA--MWQELLVS-GAVGAAAVAALAGGALNGALGRRSAIL 141
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
++S L +G V+ + N LL RL+ G GIG+A VP+YI+E +PP +RG L T+
Sbjct: 142 LASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTIN 201
Query: 138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
G F A + S + WR MLG+ IP++I F L +LPESPRWL+ KG+
Sbjct: 202 TLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQF-LGFLFLPESPRWLIQKGQ 260
Query: 198 MLEAKKVLQSLRGREDVAGE 217
+A+++L +RG + + E
Sbjct: 261 TQKARRILSQMRGNQTIDEE 280
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LPQ8 | MSSP2_ARATH | No assigned EC number | 0.7373 | 0.9142 | 0.7023 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.IX.162.1 | hypothetical protein (736 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 560 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-49 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-45 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-32 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-26 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 8e-22 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-19 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-15 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-14 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-12 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 7e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-11 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-11 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-10 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-07 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 4e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 7e-06 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-05 | |
| PRK15403 | 413 | PRK15403, PRK15403, multidrug efflux system protei | 2e-05 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 3e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 3e-04 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 3e-04 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 4e-04 | |
| PRK15402 | 406 | PRK15402, PRK15402, multidrug efflux system transl | 7e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 7e-04 | |
| PRK11652 | 394 | PRK11652, emrD, multidrug resistance protein D; Pr | 9e-04 | |
| PRK11043 | 401 | PRK11043, PRK11043, putative transporter; Provisio | 0.001 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 2e-49
Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 13/225 (5%)
Query: 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFH---------LETEPTIEGLIVAMSLIGAT 57
+A+ AA+G L G+D I + IK + GLIV++ +G
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 58 CITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLLLARLLDGFGIGLAVT 115
+ +G + D GR+ L++ +VL+ IG L+ ++ + Y+L++ R++ G G+G
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 116 LVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLMLGVLFIPS 174
LVP+YISE AP ++RG L +L Q G+ +A + G++ + WR+ LG+ F+P+
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 175 LIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMA 219
++ + +F LPESPRWLV KG++ EA+ VL LRG DV E+
Sbjct: 181 ILLLIGLLF-LPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQ 224
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-45
Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 11/224 (4%)
Query: 2 GGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREF-----HLETEPTIE-GLIVAMSLIG 55
AL+++ AAIG L+ G+D I GA+ EF + ++ + GL+V++ L+G
Sbjct: 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVG 83
Query: 56 ATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVY---VLLLARLLDGFGIGL 112
+G ++D GR+ L++ ++L+ IG ++M + +L++ R+L G G+G+
Sbjct: 84 GFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGI 143
Query: 113 AVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYC-MVFGMSLMTAPSWRLMLGVLF 171
A LVP+Y+SE AP +RG L +L Q G+ +AY +SL WR+ LG+
Sbjct: 144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL 203
Query: 172 IPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVA 215
IP+ + F+ +F+LPESPRWLV KGR+ EA+K L LRG
Sbjct: 204 IPAGLLFLG-LFFLPESPRWLVGKGRVEEARKSLARLRGTSGED 246
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREF------HLETEPTIEGLIVAMSLIGATCIT 60
+ + A +G LL G+D A I+G V + F ++ G VA +LIG
Sbjct: 13 ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG 72
Query: 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW--------SPNVYVLLLA----RLLDGF 108
G ++ GRR L +++VL+FI L W P+ + R++ G
Sbjct: 73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132
Query: 109 GIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL-MTAP-----S 162
G+GLA L P+YI+E AP IRG L + QF G + Y + + ++ A
Sbjct: 133 GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192
Query: 163 WRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLV 222
WR M IP+L+ F++ ++++PE+PR+L+S+G+ +A+ +L+ + G + +
Sbjct: 193 WRYMFASEAIPALL-FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIK 251
Query: 223 EGLGVGGETS 232
L G +T
Sbjct: 252 HSLDHGRKTG 261
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD 68
+ +G L G D ++ A+ + + L + GLIV+ +G + +G ++D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLS--ASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 69 WLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPE 128
GRR +L++ +L+ +G L++ ++ ++++LL+ R L G G G I+E PP+
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 129 IRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLP 186
RG L +G L + G L + WR + +L I L+ +L +F L
Sbjct: 120 ERGRALGLFSAGFGLGALLGP--LLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 8e-22
Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 53 LIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGL 112
L+G+ G ++D GR+ +L++S+++ + G++ +SPN V L+ RLL G GIG
Sbjct: 141 LLGSFVF----GYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG 196
Query: 113 AVTLVPIYISETAPPEIRGLLNTLPQFTGCVG-MFLAYCMVFGMSLMTAPSWRLMLGVLF 171
+ +E P + R ++ TL Q +G + L ++ P WR + +
Sbjct: 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP-----LVAYFI-PDWRWLQLAVS 250
Query: 172 IPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLR 209
+P+ ++F+L +++PESPRWL+S+GR+ EA K+LQ +
Sbjct: 251 LPTFLFFLL-SWFVPESPRWLISQGRIEEALKILQRIA 287
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 8e-19
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 12 AIGNLLQGWDNATIAGAV-LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL 70
+ L G + + A+ LY+ + + + I GL++ +G +G ++D
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGI-SPTEI-GLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 71 GRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIR 130
GRR +L++ +L+ +G L++L++ ++++LL+ R+L G G G I++ PPE R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 131 GLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190
G L +G L + G L + WR +L I +L+ VL LP P
Sbjct: 120 GRALGLLSAGFGLGAALG--PLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPP 177
Query: 191 WLVSKGRMLEAKKVLQSLRG 210
EA L
Sbjct: 178 ESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGA 65
I + + L+ G+D A + A I E+ L+ P G + + LIG G
Sbjct: 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLD--PVQLGFLFSAGLIGMAFGALFFGP 74
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125
+AD +GRR +L+ S +L+ + L+ + NV LL+ R L G G+G + + +SE A
Sbjct: 75 LADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA 134
Query: 126 PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYL 185
P RG L +G + L+ WR + V I L+ +L + +L
Sbjct: 135 PKRFRGTAVGLMFCGYPIGAAVG--GFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL 192
Query: 186 PESPRWLVSKG 196
PES +LVSK
Sbjct: 193 PESIDFLVSKR 203
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 14 GNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT-----TCSGAIAD 68
GN ++ +D A + + F + + L+ + A + G D
Sbjct: 1 GNAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGD 60
Query: 69 WLGRRPMLIVSSVLYFIGGLVM----------LWSPNVYVLLLARLLDGFGIGLAVTLVP 118
+GR+ L+++ ++ IG L++ +W+P +LLLARL+ GF +G
Sbjct: 61 RIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP--ILLLLARLIQGFSLGGEWGGAA 118
Query: 119 IYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS------WRL--MLGVL 170
+Y++E APP RG + Q VG+ LA V +S + WR+ ++ +
Sbjct: 119 LYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV 178
Query: 171 FIPSLIYFVLTIFYLPESP 189
+ +Y L E+P
Sbjct: 179 LVLIGLYLRRN---LEETP 194
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This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 14/207 (6%)
Query: 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAI--- 66
AA +G LL +D +A + + EF L T A SLI A I+ GA+
Sbjct: 16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD-------AASLISAALISRWFGALMFG 68
Query: 67 --ADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISET 124
D GRR ++ S VL+ G L ++P + +ARL+ G G+G Y+ E+
Sbjct: 69 LWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIES 128
Query: 125 APPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFY 184
P +R + L VG +A + + + WR + + +P + L
Sbjct: 129 WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLR-KN 187
Query: 185 LPESPRWL-VSKGRMLEAKKVLQSLRG 210
+PE+ W G+ L V G
Sbjct: 188 IPEAEDWKEKHAGKALVRTMVDILYGG 214
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (161), Expect = 7e-12
Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 4/204 (1%)
Query: 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD 68
+A A+ LL G D ++ A+ + L + + GL+++ +G + +G + D
Sbjct: 5 LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64
Query: 69 WLGRRPMLIVSSVLYFIGGLVMLWSPN--VYVLLLARLLDGFGIGLAVTLVPIYISETAP 126
GRR +LI+ +L+ +G L++ +PN + +LL+ RLL G G G + + +SE P
Sbjct: 65 RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124
Query: 127 PEIR--GLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFY 184
+ + G +G+ L + + WR + + L+ +L +
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184
Query: 185 LPESPRWLVSKGRMLEAKKVLQSL 208
+ L ++ + L
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLL 208
|
Length = 338 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 46 GLIVAMSLIGATCITTCSGAIADWLGRRP-MLIVSSVLYFIGGLVMLWSPNVYVLLLARL 104
GL++++ +G G ++D LGRR +L++ +L +G L++ +P++ +LL+A L
Sbjct: 214 GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL 273
Query: 105 LDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWR 164
L GFG+G A + SE APPE RG + L G +G L + L+ +
Sbjct: 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG--PLLAGLLLDTGGYG 331
Query: 165 LMLGVLFIPSLIYFVLTIFY 184
+ +L +L+ +L +
Sbjct: 332 GVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITT-----CS 63
AA +G LL G+D I + ++ EF L + A SLI A I+
Sbjct: 23 SAAWLGYLLDGFDFVLITLVLTEVQGEFGL-------TTVQAASLISAAFISRWFGGLLL 75
Query: 64 GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGI----GLAVTLVPI 119
GA+ D GRR +++S VL+ +G L ++P + L +ARL+ G G+ G + T
Sbjct: 76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT---- 131
Query: 120 YISETAPPEIRG 131
Y+ E+ P +R
Sbjct: 132 YVIESWPKHLRN 143
|
Length = 496 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 46 GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLL 105
GL++A +G + SG + D GR+P+L+V ++ + + S N+ VL++AR L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 106 DGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165
GFG A+ I++ PPE RG+ L +G L G L WR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLG--PPLGGVLAQFLGWRA 118
Query: 166 MLGVLFIPSLIYFVLTIFYLPES 188
L I +L F+L F LPE+
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 64 GAIADWLGRRPMLIVS----SVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPI 119
G +AD LGR+ L++ F V + L RLL GFGIG A+ +V
Sbjct: 223 GGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG----FFLFCRLLSGFGIGGAIPIVFS 278
Query: 120 YISETAPPEIRG-LLNTLPQFTGCVGMFLA---------YCMVFGM-SLMTAPSWRLMLG 168
Y +E E RG L+ L F G++ A Y F M S SWR+ +
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338
Query: 169 VLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQ 206
V P ++ + + ++PESPR+ + G+ EA +L+
Sbjct: 339 VCAFPC-VFAIGALTFMPESPRFFLENGKHDEAWMILK 375
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 46 GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP---NVYVLLLA 102
GL++ ++ + G ++D LGRR L+++ +L + L + + LL+A
Sbjct: 240 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299
Query: 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLA 148
LL GFG GL + +S+ AP E RG + L G +G L
Sbjct: 300 LLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Query: 43 TIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLA 102
++ +I + L A I +G +A G R + ++S+ + +G L+ +PN+ ++++
Sbjct: 38 QVQWVITSYMLANAISIPL-TGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIF 96
Query: 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL----M 158
R++ GFG G + L + PPE RG G+ + G +L +
Sbjct: 97 RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRA------MAIWGLTVLVAPALGPTLGGWII 150
Query: 159 TAPSWRLMLGVLFIPSLIYFVLTIFYLPE 187
WR + + +I V+ F LP
Sbjct: 151 ENYHWRWIFLINVPIGIIVVVVAFFILPR 179
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 17/227 (7%)
Query: 2 GGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITT 61
A + + + LL+G D + A + +EF L+ G + ++G
Sbjct: 12 RLALTIGLCFLVA-LLEGLDLQSAGVAAPRMAQEFGLD--VAQMGWAFSAGILGLLPGAL 68
Query: 62 CSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYI 121
G +AD +GR+ +LIVS L+ + L + + LL+ARLL G G+G A +P I
Sbjct: 69 LGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGA---LPNLI 125
Query: 122 ---SETAPPEIRGLLNTLPQFTGC---VGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSL 175
SE P +RG T C G LA V G+ +WR + V + L
Sbjct: 126 ALTSEAVGPRLRG---TAVSLMYCGVPFGGALA--SVIGVLAAGDAAWRHIFYVGGVGPL 180
Query: 176 IYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLV 222
+ L + +LPES + + G + VL++L G + L +
Sbjct: 181 LLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWI 227
|
Length = 406 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Query: 40 TEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM---LWSPNV 96
++ + +IV + T I + + D GRRP+L++ + I LV+ L
Sbjct: 286 SDSLLVTIIVGVVNFVFTFI---AIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK 342
Query: 97 -----YVLLLARLLDGFGIGLAVTLVP-IYISETAPPEIRGLLNTLPQFTGCVGMFL-AY 149
V ++ LL L VP + +SE P +R + + FL +
Sbjct: 343 SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGF 402
Query: 150 CMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEA 201
+ + + G+L +++ + F++PE +KGR LE
Sbjct: 403 LFPIITGAIGGYVFLVFAGLL----VLFILFVFFFVPE------TKGRTLEE 444
|
Length = 449 |
| >gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 41/185 (22%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 25 IAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84
I ++ + R+F + ++ V++ L G + G ++D +GRRP+LI ++++
Sbjct: 35 IQPGIINVVRDF--NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFT 92
Query: 85 IGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVG 144
+ L++ ++ L+AR + G I T+ + + E A + +G + + T V
Sbjct: 93 LACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQE-AFGQTKG-IKLMAIITSIVL 150
Query: 145 MFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKV 204
+ + G +LM W+++ ++ + LI FV + +PE+ + AK V
Sbjct: 151 VAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK---RGAVPFSAKSV 207
Query: 205 LQSLR 209
L+ R
Sbjct: 208 LRDFR 212
|
Length = 413 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 22/135 (16%)
Query: 64 GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISE 123
G ++D GRRP+L++ ++ + L + S N+ LL+ R + FG +
Sbjct: 61 GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVI------- 113
Query: 124 TAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP----------SWRLMLGVLFIP 173
+ L+ + ++ V ++ AP SW + L +
Sbjct: 114 -----SQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168
Query: 174 SLIYFVLTIFYLPES 188
++ L F LPE+
Sbjct: 169 GILLSALIFFILPET 183
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 18/210 (8%)
Query: 32 IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML 91
I + + +E G ++ +G + L RR +L+ L+ + L+
Sbjct: 39 IAADLGV-SEGAA-GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA 96
Query: 92 WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCM 151
+P+ VLLLAR L G G+ ++ + PP RG + V L
Sbjct: 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG------RALALVFTGLTLAT 150
Query: 152 VFGMSLMTAPS----WRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQS 207
V G+ L T WR + + +L+ +L LP S S + +L+
Sbjct: 151 VLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEI---SGSLPGPLRTLLRL 207
Query: 208 LRGREDVAGEMALLVEGLGVGGETSLEEYI 237
LR + + LL L + G +L YI
Sbjct: 208 LRRPGVL---LGLLATFLFMTGHFALYTYI 234
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 46 GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-PNVYVLLLARL 104
GL A +GA G +A+ LG R + ++ ++L + L++L+ + +L LA
Sbjct: 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFF 185
Query: 105 LDGFGIGLAVTLVPIYISETAPPEIR--GLLNTLPQFTGCVGMFLA-----------YCM 151
L FG +T +P+Y+ E GLL +L G +G L +
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL 245
Query: 152 VFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183
+ G+ L +L + PSL ++ +
Sbjct: 246 LIGLLLAAL----GLLLLALAPSLALLLVALL 273
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 27/163 (16%)
Query: 44 IEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLAR 103
I L + + G I + DW S+L IG + M P V V L+
Sbjct: 513 IPQLSWLIIIFGYLVILIIYKWLVDWAKT--SKPAPSLL--IGLINMFLFPGVQVFLVVL 568
Query: 104 LLDGFGIGLAVTLVPIYIS--------ETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155
L + + + L P+++ E I +++T+ GCV +Y ++ +
Sbjct: 569 AL--VCVPILLLLKPLFLMREGKKGEFEFGEVMIHQVIHTIEFCLGCVSHTASYLRLWAL 626
Query: 156 SL-----------MTAPSWRLMLGVLFIPSL--IYFVLTIFYL 185
SL M +GV+ + + I FVL
Sbjct: 627 SLAHAQLSAVLNTMVILIGFESIGVIALVVVFIIVFVLGHAIN 669
|
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 45 EGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLLLA 102
+++ + I A +A G++ ++ +L IG +++ + P ++++ L+
Sbjct: 259 FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVL 318
Query: 103 RLLDGFGIGLAVTLVPIYISETA 125
+L G G+GLA L +++
Sbjct: 319 VVLAGIGLGLATLLPWAMLADVV 341
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 46 GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLLLAR 103
L++ S G + G++ + ++ +L +G L++ ++P +V ++++A
Sbjct: 275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVAL 334
Query: 104 LLDGFGIGLAVTLVPIYISETA 125
++ G G G+A L +++T
Sbjct: 335 IIAGVGTGIANPLPWAMVADTV 356
|
Length = 467 |
| >gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 22 NATIAGAVLYIKREFH--LETEPTIEGLIVAMS--LIGATCITTCSGAIADWLGRRPMLI 77
N I +L + +F+ E PT +M+ L G + G ++D +GRRP+++
Sbjct: 29 NDMIQPGMLAVVEDFNAGAEWVPT------SMTAYLAGGMFLQWLLGPLSDRIGRRPVML 82
Query: 78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIG 111
+ + L +L + ++ L R L G G+
Sbjct: 83 AGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLC 116
|
Length = 406 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEG-LIVAMSLIGATCITTCSGAIAD 68
+A +G + G+D I + IK + L +EG + + IG G +AD
Sbjct: 22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTD---MEGAFLATAAFIGRPFGGALFGLLAD 78
Query: 69 WLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPE 128
GR+P+++ S V Y +G + + V +L L+R + G G+ Y E+ P
Sbjct: 79 KFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH 138
Query: 129 IRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYL--- 185
++ + +G +A F S A WR V +P VL + Y+
Sbjct: 139 LKSKASAFLVSGFGIGNIIA--AYFMPSFAEAYGWRAAFFVGLLP-----VLLVIYIRAR 191
Query: 186 -PESPRWLVSK 195
PES W +K
Sbjct: 192 APESKEWEEAK 202
|
Length = 426 |
| >gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 64 GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLA 113
G ++D +GRRP+++V ++ +G LV L++ ++ VL+ A + G G G+
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG 113
|
Length = 394 |
| >gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 64 GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGI 110
G ++D GR+P+L+ L+ +G L MLW + LL+ R + G+
Sbjct: 62 GPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV 108
|
Length = 401 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 560 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.95 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.88 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.88 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.88 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.86 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.86 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.86 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.85 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.85 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.84 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.84 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.83 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.83 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.83 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.82 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.81 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.81 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.81 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.8 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.8 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.8 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.8 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.79 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.79 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.79 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.79 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.79 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.78 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.78 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.77 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.76 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.76 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.76 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.76 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.76 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.76 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.75 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.75 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.75 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.75 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.75 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.74 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.73 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.73 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.73 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.73 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.73 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.72 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.71 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.71 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.71 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.7 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.7 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.7 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.69 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.68 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.67 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.67 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.65 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.64 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.64 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.62 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.61 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.61 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.59 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.59 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.58 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.58 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.57 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.57 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.57 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.55 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.51 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.5 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.5 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.48 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.48 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.47 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.47 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.47 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.44 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.42 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.41 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.4 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.38 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.36 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.36 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.34 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.33 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.33 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.32 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.32 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.32 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.31 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.31 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.3 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.3 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.29 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.26 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.25 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.24 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.21 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.19 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.18 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.18 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.18 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.17 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.16 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.14 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.12 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.11 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.1 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.1 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.1 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.1 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.1 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.1 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.09 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.07 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.04 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.04 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.03 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.03 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.03 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.01 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.01 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.01 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.01 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.99 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.98 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.98 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.94 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.94 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.93 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.93 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.91 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.9 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.85 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.85 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.84 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.81 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.8 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.78 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.77 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.76 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.76 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.75 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.75 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.74 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.73 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.71 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.71 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.71 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.7 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.69 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.69 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.69 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.68 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.67 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.67 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.66 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.66 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.64 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.64 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.61 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.61 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.59 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.58 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.58 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.56 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.55 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.55 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.54 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.53 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.53 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.5 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.49 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.47 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.46 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.44 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.41 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.36 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.34 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.31 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.3 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.28 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.23 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.2 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.2 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.18 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.18 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.17 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.13 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.13 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.1 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.09 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.07 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.04 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.03 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.02 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.01 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.98 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.98 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.96 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.95 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.83 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.8 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.76 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.75 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.68 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.64 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.53 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.51 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.49 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.48 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.45 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.95 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 96.86 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.76 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.53 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.25 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.15 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.02 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.79 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.72 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.39 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.16 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.1 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.88 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.15 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 93.65 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.64 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.48 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 92.37 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 91.91 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 91.03 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.02 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 89.17 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.8 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 87.12 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 86.89 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 85.73 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 83.76 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 83.33 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 83.15 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 82.48 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 82.27 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.86 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=254.92 Aligned_cols=309 Identities=27% Similarity=0.405 Sum_probs=240.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIK--------REFHLETEP----TIEGLIVAMSLIGATCITTCSGAIADWL 70 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~--------~~~gls~s~----~~~gli~s~~~lG~iig~~~~G~LsDr~ 70 (560)
+..+.+++++++.|-.||....+++..+.++ +.++...+. ...+.+++++.+|.++|+++.++++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777788889999888887655443 344532232 3568889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHH
Q 008603 71 GRRPMLIVSSVLYFIGGLVMLW---SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFL 147 (560)
Q Consensus 71 GRR~~lli~~ll~ai~~il~~~---a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~l 147 (560)
|||..++++.++..++.+++.+ .+++.+++++|++.|+..|......+.|+.|.+|.+.||....+.+.+..+|..+
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll 167 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL 167 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999999888888876 4688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhh-hcchHHHHHHHHHHhcCcChHHHHHHHHHHHH
Q 008603 148 AYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVS-KGRMLEAKKVLQSLRGREDVAGEMALLVEGLG 226 (560)
Q Consensus 148 g~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~-~gr~~ea~~~l~~l~~~~~~~~~i~~l~~~l~ 226 (560)
++....--.+.+...|++.+.+..+++++.+++ ++++|||||||.. +++.+||++.++.+++.++.+.+.........
T Consensus 168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~ 246 (485)
T KOG0569|consen 168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIE 246 (485)
T ss_pred HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 977776666666778999999999999986654 7889999999988 89999999999999999887776655444433
Q ss_pred hh-----hhhhHHHHHhcccccchh-------hhhhcccccchhhhchhhhhHHhhhhhcccccccccccccchhhHHHH
Q 008603 227 VG-----GETSLEEYIIGPANDLAA-------DQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVT 294 (560)
Q Consensus 227 ~g-----~~~t~~~~i~~~~~~~~~-------~~~~~~g~~~i~ly~~~~gl~~i~q~~~G~~~i~l~s~~~S~~~~vv~ 294 (560)
.. ...++.+.+..+..++.. ..++.+|.+.+..|+...-...- +.... +...+....+++
T Consensus 247 ~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG---~~~~~-----a~~an~~~g~v~ 318 (485)
T KOG0569|consen 247 EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG---FTPEE-----AQYANLGIGIVN 318 (485)
T ss_pred HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC---CCHHH-----HHHHHHHHHHHH
Confidence 32 444666776666665542 56677777777777655321100 00000 112222267788
Q ss_pred Hhhhccc--ccCCCCCcccccccccccc
Q 008603 295 LFGSVHE--KLPDQGSMRSTLFPHFGSM 320 (560)
Q Consensus 295 l~gsi~~--~idriGRR~ll~~g~~G~m 320 (560)
++.++.+ ++||+|||++++.+..+|.
T Consensus 319 ~~~t~~~~~lid~~gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 319 LLSTLVSPFLIDRLGRRPLLLISLSLMA 346 (485)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 8888888 8999999999999888854
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=245.91 Aligned_cols=303 Identities=34% Similarity=0.563 Sum_probs=220.6
Q ss_pred hhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCC---Ch--HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q 008603 3 GAALVAIAAAIGNLLQGWD--NATIAGAVLYIKREFHLET---EP--TIEGLIVAMSLIGATCITTCSGAIADWLGRRPM 75 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~--~~~~~~~lp~i~~~~gls~---s~--~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ 75 (560)
...+..+.+.++.+..+++ .....+..+.+.+...... +. .+.++++++..+|+.++.++.|.++|++|||+.
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3455667778888888886 5566666776666442211 11 355899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 76 LIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 76 lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
++++.+++.++.+++++++|+..++++|++.|+|.|....+++.|++|+.|++.||...++.+....+|..++++.....
T Consensus 122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996666444
Q ss_pred HhccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhc--CcChHHHHHHHHHHHHhhh----
Q 008603 156 SLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRG--REDVAGEMALLVEGLGVGG---- 229 (560)
Q Consensus 156 ~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~--~~~~~~~i~~l~~~l~~g~---- 229 (560)
.... .+||..+++..+++++..+. .+++||||+|+.++++.+++++.+.++++ ..+...++..+........
T Consensus 202 ~~~~-~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
T KOG0254|consen 202 SKVY-AGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE 279 (513)
T ss_pred ccCC-ccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence 3221 58999999999999998877 89999999999999999999999999999 4455555544441111000
Q ss_pred -hhhHHHHHhcccccchh------hhhhcccccchhhhchhhhhHHhhhhhcccccccccc--cccchhhHHHHHhhhcc
Q 008603 230 -ETSLEEYIIGPANDLAA------DQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGS--RHGSMVDPLVTLFGSVH 300 (560)
Q Consensus 230 -~~t~~~~i~~~~~~~~~------~~~~~~g~~~i~ly~~~~gl~~i~q~~~G~~~i~l~s--~~~S~~~~vv~l~gsi~ 300 (560)
.....+...+...+... ..+|.++.+.+.+|.+..- +.. +..+ ...+....++.+++++.
T Consensus 280 ~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-----~~~------g~~~~~~~~~~~~~~v~~~~t~~ 348 (513)
T KOG0254|consen 280 GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-----KSA------GLKSDTFLASIILGVVNFLGTLV 348 (513)
T ss_pred ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHH-----Hhc------CCCCchHHHHHHHHHHHHHHHHH
Confidence 00111111100000000 3344444444444433320 000 1111 11222255666666666
Q ss_pred c--ccCCCCCcccccccccc
Q 008603 301 E--KLPDQGSMRSTLFPHFG 318 (560)
Q Consensus 301 ~--~idriGRR~ll~~g~~G 318 (560)
. ++||+|||++++++..+
T Consensus 349 ~~~lvd~~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 349 ATYLVDRFGRRKLLLFGAAG 368 (513)
T ss_pred HHHHHHHhccHHHHHHhHHH
Confidence 6 88999999999999988
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-23 Score=225.11 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREF-H--LETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVS 79 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~-g--ls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~ 79 (560)
..+.++++++++.++.+++...++..+|.+..++ + ...+..+.+++.+...++.+++.++.|+++||+|||+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4566777889999999999999999999887753 1 112556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 80 SVLYFIGGLVMLWSPN------VYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 80 ~ll~ai~~il~~~a~s------~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
+++.+++.++++++++ ++.++++|++.|++.|...+..+.+++|++|+++|++++++.+....+|..+++.+..
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888765 7899999999999999999999999999999999999999999999999988876654
Q ss_pred HHHh---------------------ccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchH-HHHHHHHHHhc
Q 008603 154 GMSL---------------------MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRML-EAKKVLQSLRG 210 (560)
Q Consensus 154 ~l~~---------------------~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~-ea~~~l~~l~~ 210 (560)
.... ....+||++|.+.++++++.+++ .+++||||||+..++|.+ ++++.+.++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 4321 01237999999988888775554 578899999999888774 46666666543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=221.31 Aligned_cols=206 Identities=32% Similarity=0.636 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREF--------HLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPM 75 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~--------gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ 75 (560)
...++++++++.+..+++...+++..|.+++.| +. ++.+.+++.++++++.++++++.|+++||+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 355677788899999999999999999999988 55 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q 008603 76 LIVSSVLYFIGGLVMLWS------------PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV 143 (560)
Q Consensus 76 lli~~ll~ai~~il~~~a------------~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l 143 (560)
++++.++++++.++++++ +.+..++++|++.|++.|...+.++.+++|++|+++||+++++.+....+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999888877763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------hccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCc
Q 008603 144 GMFLAYCMVFGMS------LMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRE 212 (560)
Q Consensus 144 G~~lg~li~~~l~------~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~ 212 (560)
|.+++++...... .....+||+.|++.+++.++..+ ..+++||+|+++..+++.+++.+...+.....
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~ 241 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIMGNT 241 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh
Confidence 9988865543332 12346899999999888887654 46778999999888888777776666665443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=224.14 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=184.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
..+.++++++++.++.+++...++.++|.+.+++++ +..+.+++.+++++|.+++.+++|+++||+|||+++++++++
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl--s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI--PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 356677788888899999999999999999999999 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh-----
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL----- 157 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~----- 157 (560)
.+++.++++++++++.++++|++.|++.|+..++.+.+++|++|++.|++..++.+.++.+|.++++.+...+..
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999999999999999999999999888765543321
Q ss_pred ------ccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCc
Q 008603 158 ------MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRE 212 (560)
Q Consensus 158 ------~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~ 212 (560)
....+||+.|++.+++.++.+ +..+++||||+|+..++|.+++.+.+++++..+
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 122479999999888877654 456789999999999999999999999988754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=203.98 Aligned_cols=185 Identities=22% Similarity=0.201 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+...+.+++++++.++|...++...|.+.+++++ +..+.|++.+++++++.+++++.|+++||+|||+++.++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL--SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 56778888889999999999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh----cc
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL----MT 159 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~----~~ 159 (560)
+++.+++++++|++.+++.|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+...+.. .+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998766544332 13
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
..+||++|++.++++++..++.++++||+|+
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4699999999999988877777788899984
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-26 Score=244.66 Aligned_cols=208 Identities=40% Similarity=0.666 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIK--REFHLET-------EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSS 80 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~--~~~gls~-------s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ 80 (560)
++.++.+..+|+....+...+... ..+..+. +..+.+++.++..+|.++|.++.|.++||+|||+.++++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 456677999999988877766544 2333321 1246789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 008603 81 VLYFIGGLVMLWSP---NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL 157 (560)
Q Consensus 81 ll~ai~~il~~~a~---s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~ 157 (560)
++.+++.++.++++ |++.++++|++.|++.|...+..+.|+.|..|+++|++..++.+.+..+|.+++..+......
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 999999999999999999999999999999999999999999999999999988666544422
Q ss_pred cc-ccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCcChHHHH
Q 008603 158 MT-APSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEM 218 (560)
Q Consensus 158 ~~-~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~~~~~i 218 (560)
.. ...||..+.+..+++++.++ ..+++||||+|+.+++|.+||++.++++++.+..+.+.
T Consensus 164 ~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~ 224 (451)
T PF00083_consen 164 YSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI 224 (451)
T ss_pred ccccccccccccccccccccccc-cccccccccceecccccccccccccccccccccccccc
Confidence 11 24699999999999987655 45789999999999999999999999977665444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=207.86 Aligned_cols=189 Identities=20% Similarity=0.312 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHH--HHH--HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTI--EGL--IVAMSLIGATCITTCSGAIADWLGRRPMLIVSSV 81 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~--~gl--i~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~l 81 (560)
.+.+++++++++.+||...++...|.+.++|+.+.++.. .+. +.++.+++..++.++.|+++||+|||+++.++.+
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 355677889999999999999999999999975433321 222 2477889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 82 LYFIGGLVMLWSPNVYV--------LLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 82 l~ai~~il~~~a~s~~~--------lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
+++++++++++++|+.. ++++|+++|++.|...+....+++|++|+++||+..++.+....+|..++..+..
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999864 8899999999999999999999999999999999999998888888888765543
Q ss_pred HHHh------ccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhh
Q 008603 154 GMSL------MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSK 195 (560)
Q Consensus 154 ~l~~------~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~ 195 (560)
.... ....+||++|++.+++.++.+ +..+.+||+|+|+..+
T Consensus 176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 176 LISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETPAFQQHV 222 (490)
T ss_pred HHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChhHHHHH
Confidence 3221 135699999999877666543 3456789999986543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=196.52 Aligned_cols=226 Identities=21% Similarity=0.253 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.+..++.+.++.|..+...+...+++|.+.+||+. +....|+..+.+.++..++.++...+.||+.||+.++....+
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~v--s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGV--SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 456778889999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
++++.+++++++||+.++++|++.|+..|.+++....+.+++.|+++|++++++......++.+++ +..+-++.+..|
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G--vPLGt~ig~~~G 165 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG--VPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh--ccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 666777788899
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCcChHHHHHHHHHHHHhhhhhhHHHHHh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYII 238 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~~~~~i~~l~~~l~~g~~~t~~~~i~ 238 (560)
||..|++.+.++++.++..+..+| |+... +.+..+.++.++.+ ++...+...+...+.+++..+...|+.
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~~~~~~~~~~~l---~~p~v~~~l~~t~l~~~g~F~~ftYi~ 235 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP--PSEIS-GSLPGPLRTLLRLL---RRPGVLLGLLATFLFMTGHFALYTYIR 235 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CccCC-CCCCcchhHHHHHh---cCchHHHHHHHHHHHHcchhhhHHhHH
Confidence 999999999999999998888899 21110 11111112222223 233344455555566666666666543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-20 Score=200.12 Aligned_cols=183 Identities=15% Similarity=0.080 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.........+..++..++.....+.+|.+.+++|+ +..+.+++.+++.++++++.++.|+++||+|||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL--TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44455556666677777777788889999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh--c---
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL--M--- 158 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~--~--- 158 (560)
+++.++++++++++.++++|++.|++.+.. ..+..+++|++|+++||+++++...+.++|..+++.+...... .
T Consensus 112 ~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 112 APAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998875 4466789999999999999999988877887776554432211 1
Q ss_pred --cccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 159 --TAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 159 --~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
+..+||+.|++.+++.++..++.+++.++.|
T Consensus 191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p 223 (476)
T PLN00028 191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP 223 (476)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 1248999999999998887766666555655
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=191.56 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.+....++.++++..+++....++..|.+++++|+ ++.+.+++.++..++..++.++.|.++||+|||++++++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL--TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456777888999999999999999999999999999 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
.+++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+...+......+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876654443222235
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChhhhh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPRWLV 193 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~ 193 (560)
||+.|.+.+++.++.. +.....||+|++..
T Consensus 167 w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~ 196 (405)
T TIGR00891 167 WRALFFISILPIIFAL-WLRKNIPEAEDWKE 196 (405)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhCCCChhHHH
Confidence 9999988776666543 34566788876543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=196.52 Aligned_cols=185 Identities=17% Similarity=0.147 Sum_probs=167.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 008603 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSS 80 (560)
Q Consensus 1 m~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ 80 (560)
|.+.++++++++++.|+...|.+.++..+|.+.+++|. +..+.+++.+++.++..++.++.|+++||+|||++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~--s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~ 78 (495)
T PRK14995 1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA--SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG 78 (495)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 66778889999999999999999999999999999999 7799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 81 VLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA-PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 81 ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~-p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
++++++.+++++++|++.++++|+++|++.+...+.....+.+.+ |+++|++++++......+|..+++.+. ..+.+
T Consensus 79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg--g~l~~ 156 (495)
T PRK14995 79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG--GILLE 156 (495)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhc
Confidence 999999999999999999999999999999998888877777765 679999999999999999999995544 55566
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
..+||+.|++...+.++..++..+++||.|
T Consensus 157 ~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 157 HFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 789999999988888887777777788865
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=190.90 Aligned_cols=188 Identities=27% Similarity=0.307 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.+.+.+++.+..++.+++....+...|.+.+++|. ++.+.+++.++..++.+++.++.|+++||+|||+++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 566777888889999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
..++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+. ....+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~ 167 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAA 167 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999886554 34455678
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChhhhhh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPRWLVS 194 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~ 194 (560)
||+.|++.+++.++.+++..+++||+|++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQA 199 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence 99999998887777666666778999876543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=192.04 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CChHHH---HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLE-TEPTIE---GLIVAMSLIGATCITTCSGAIADWLGRRPMLIV 78 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls-~s~~~~---gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli 78 (560)
+.++.++.+++++++.++|...++...|.+.++++.+ .+..+. +.+.+..+++..++++++|+++||+|||+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4455667778899999999999999999999998531 133433 334455556666999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH
Q 008603 79 SSVLYFIGGLVMLWSPNVY--------VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYC 150 (560)
Q Consensus 79 ~~ll~ai~~il~~~a~s~~--------~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~l 150 (560)
+.++++++++++++++++. .++++|+++|++.|...+....+++|++|+++||+..++.+.....|.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988763 68899999999999999999999999999999999999988888888887765
Q ss_pred HHHHHHh------ccccchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 151 MVFGMSL------MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 151 i~~~l~~------~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
....+.. ....+||++|++.+++.++..+ ....+||+|++
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~ 224 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ 224 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH
Confidence 4433221 1256999999998888877543 35567898764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=192.45 Aligned_cols=206 Identities=40% Similarity=0.717 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLE------TEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls------~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll 77 (560)
.+...+++.++.++..++.....+.+|.+..+++.+ .+..+.+++.+++.++..++.++.|+++||+|||++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 105 (481)
T TIGR00879 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105 (481)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence 444555667777888899999999999888888874 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH-H
Q 008603 78 VSSVLYFIGGLVMLWSP---NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV-F 153 (560)
Q Consensus 78 i~~ll~ai~~il~~~a~---s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~-~ 153 (560)
++.++.+++.+++.+.. +++.+++.|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+. .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 185 (481)
T TIGR00879 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185 (481)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988886543 4568999999999999999999999999999999999999999999999999997766 2
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhc
Q 008603 154 GMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRG 210 (560)
Q Consensus 154 ~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~ 210 (560)
........+||+.|++.++..++.. +..+++||+|+++..+++.+++.+...+...
T Consensus 186 ~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (481)
T TIGR00879 186 KVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLARLRG 241 (481)
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHHHhC
Confidence 1333356799999999776666544 4467789999887777666665555555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=185.91 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+...+.+.++.++.........+.+|.+.+++|. ++.+.+++.+.+.++..++.++.|.++||+|||+++.++.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHM--QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 44455566666666555555566678999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
+++.+++.+++|++.++++|+++|++.+...+....+++|++|+++|++++++.+...++|..+++.+.. ...+..+|
T Consensus 85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~--~l~~~~gw 162 (390)
T PRK03545 85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR--VIGQYLGW 162 (390)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH--HHHHHhcH
Confidence 9999999999999999999999999999988999999999999999999999999999999999865543 33456699
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
|+.|++.+++.++..++..+.+||.|
T Consensus 163 ~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 163 RTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999988887666566677764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=187.80 Aligned_cols=183 Identities=23% Similarity=0.339 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.....+.+.++++..+++.....+.+|.+++++|+ ++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL--TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34456777888889999999999999999999999 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
+++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+. ....+..+|
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~--~~l~~~~~w 171 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFM--PSFAEAYGW 171 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH--HHHcccCCH
Confidence 999999999999999999999999999999999999999999999999999999999999998885443 333456799
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
|+.|++..++.++.+ +.....||++++
T Consensus 172 ~~~f~i~~~~~~~~~-~~~~~~p~~~~~ 198 (426)
T PRK12307 172 RAAFFVGLLPVLLVI-YIRARAPESKEW 198 (426)
T ss_pred HHHHHHHHHHHHHHH-HHHHHCCCChHH
Confidence 999988665544432 223345776654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=203.06 Aligned_cols=179 Identities=30% Similarity=0.514 Sum_probs=157.6
Q ss_pred HHHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 008603 27 GAVLYIKREFHLET-EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLL 105 (560)
Q Consensus 27 ~~lp~i~~~~gls~-s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l 105 (560)
+..|.+.++++++. ++.+.+++.+++.+|.+++.++.|+++||+|||++++++.++.+++.++++++++++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34677888999931 17899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheec
Q 008603 106 DGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYL 185 (560)
Q Consensus 106 ~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~l 185 (560)
.|++.+...+....+++|++|+++|+.+.++.+....+|.++++.+.... .+||+.|++.+++.++..++. +++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~~wr~~~~~~~i~~~~~~~~~-~~~ 263 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI-----PDWRWLQLAVSLPTFLFFLLS-WFV 263 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999999999999999999999999999988886554322 249999999999988776654 788
Q ss_pred cCChhhhhhhcchHHHHHHHHHHhcC
Q 008603 186 PESPRWLVSKGRMLEAKKVLQSLRGR 211 (560)
Q Consensus 186 pEsP~~L~~~gr~~ea~~~l~~l~~~ 211 (560)
||+|+|+..+++.+++.+.+++..+.
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~ 289 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKI 289 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999888887776543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-19 Score=190.66 Aligned_cols=187 Identities=20% Similarity=0.269 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHc--CCCCChHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhCChHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVL-YIKREF--HLETEPTIEGLIV-----AMSLIGATCITTCSGAIADWLGRRPML 76 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp-~i~~~~--gls~s~~~~gli~-----s~~~lG~iig~~~~G~LsDr~GRR~~l 76 (560)
....+.+.+++++.++|....+...| .+.+++ +. ++. .+++. ++.+++..++.++.|+++||+|||+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQV--SPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 34566778899999999999888877 456666 56 444 45543 345566788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q 008603 77 IVSSVLYFIGGLVMLWSPNVY--------VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLA 148 (560)
Q Consensus 77 li~~ll~ai~~il~~~a~s~~--------~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg 148 (560)
+++.++++++++++++++++. .++++|+++|++.|...+....+++|++|+++|++..+..+....+|..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986 588999999999999999999999999999999999999999889998887
Q ss_pred HHHHHHHHh------ccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhh
Q 008603 149 YCMVFGMSL------MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSK 195 (560)
Q Consensus 149 ~li~~~l~~------~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~ 195 (560)
..+...+.. ....+||++|++.+++.++. ++.....||+|+|..++
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~ 229 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQ 229 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHH
Confidence 544433221 12469999999988877654 33355689999876544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=187.26 Aligned_cols=179 Identities=20% Similarity=0.324 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIG 86 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~ 86 (560)
+++.++++.++..++....+..+|.+.+++|. ++.+.+++.+.+.++.+++.++.|+++||+|||+.++++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999 7799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Q 008603 87 GLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLM 166 (560)
Q Consensus 87 ~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~ 166 (560)
.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+. ....+..+||+.
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~w~~~ 158 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLG--GWIIENYHWRWI 158 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccH--hHhccCcCceeh
Confidence 999999999999999999999999999999999999999999999999999999999999985544 445567799999
Q ss_pred HHHHHHHHHHHHHhhheeccCCh
Q 008603 167 LGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 167 f~i~ai~~ll~~il~~~~lpEsP 189 (560)
|++.+++.++..++..++.||.+
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 159 FLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhhhHHHHHHHHHHHHHcCCcc
Confidence 99998888877776666777754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=179.24 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il 89 (560)
.+.+..++.........+.+|.+.+++|. ++.+.+++.+++.++..++.++.|+++||+|||+.+.++.++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 9 LLGCLSILGPLGIDMYLPAFPEIAADLST--PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33334455667778888889999999999 7899999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q 008603 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGV 169 (560)
Q Consensus 90 ~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i 169 (560)
+.++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.+....+|..+++.+.. ...+..+||..|++
T Consensus 87 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 87 LALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG--YILVWLSWHAIFAF 164 (385)
T ss_pred HHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988865543 34455689999999
Q ss_pred HHHHHHHHHHhhheeccCChh
Q 008603 170 LFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 170 ~ai~~ll~~il~~~~lpEsP~ 190 (560)
.+++.++..++.+++.||+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 988888877766667787653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=179.80 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
....++.+..++......+.+|.+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGI--SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCC--CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 355567777788888888899999999999 779999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++......+|..+++.+. ....+..+||+.|+
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~--~~l~~~~gwr~~f~ 161 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG--TYLSQEFSWRYTFL 161 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH--HHHhhhccHHHHHH
Confidence 9999999999999999999999998888889999999999999999999888889888885443 34445679999999
Q ss_pred HHHHHHHHHHHhhheeccCCh
Q 008603 169 VLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 169 i~ai~~ll~~il~~~~lpEsP 189 (560)
+.+++.++.++..++++||.+
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 999888877666666788864
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=176.68 Aligned_cols=178 Identities=22% Similarity=0.155 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
+.+++++..........+.+| ++++++|+ ++.+.+++.++..++.+++.++.|+++||+|||+.++++.++.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCC--CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 456666777777788888999 49999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc--------c
Q 008603 89 VMLWSP-NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM--------T 159 (560)
Q Consensus 89 l~~~a~-s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~--------~ 159 (560)
++.+++ +++.+++.|++.|++.+.. +....+++|++|+++|++++++...+.++|..+++.+...+... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 9999999999999996654 66788999999999999999999988888887776655433321 1
Q ss_pred ccchhHHH-HHHHHHHHHHHHhhheeccCChh
Q 008603 160 APSWRLML-GVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 160 ~~~Wr~~f-~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
..+||+.| ++.+++.++..++..++.+|.|+
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPP 193 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence 34899999 44455555555555566677663
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=179.67 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008603 22 NATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLL 101 (560)
Q Consensus 22 ~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii 101 (560)
....++.+|++.+++|+ +..+.+++.+++.++..++.++.|.++||+|||+++.++.++.+++.++++++++++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL 96 (377)
T ss_pred HhhhhhHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhh
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~ 181 (560)
+|++.|++.+...+....++.+++| ++|++++++......+|..++..+.. ...+..+||+.|++.+++.++..++.
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLIT--SVINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888899887 57999999999988888776533322 22345689999999999888877766
Q ss_pred heeccCCh
Q 008603 182 IFYLPESP 189 (560)
Q Consensus 182 ~~~lpEsP 189 (560)
++++++.|
T Consensus 174 ~~~~~~~~ 181 (377)
T TIGR00890 174 AFLIGYPP 181 (377)
T ss_pred HHheecCc
Confidence 66666654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-18 Score=179.33 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008603 20 WDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVL 99 (560)
Q Consensus 20 ~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~l 99 (560)
.....+++.+|.+++++|+ ++.+.|++.+++.+++.+++++.|+++||+|||++++.+.+..+.+.+.....+++..+
T Consensus 5 ~~~~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDV--SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHHHHhhHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3446678889999999999 88999999999999999999999999999999998776655555544333344799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
+++|++.|++.+.. ......++|++|+++|++++++.+....+|..+++++... ..+..+||+.|++.++++++..+
T Consensus 83 ~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~--l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 83 LACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLK--IYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHHH
Confidence 99999999999964 5566677999999999999999999999999999665544 34567999999999999888887
Q ss_pred hhheeccCChhhh
Q 008603 180 LTIFYLPESPRWL 192 (560)
Q Consensus 180 l~~~~lpEsP~~L 192 (560)
+.++++||+|++.
T Consensus 160 ~~~~~lp~~p~~~ 172 (368)
T TIGR00903 160 LVLAALPALPFQA 172 (368)
T ss_pred HHHHHcCCCCCCC
Confidence 7788899998763
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=178.22 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh
Q 008603 15 NLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP 94 (560)
Q Consensus 15 ~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~ 94 (560)
+++..++...++...|.+.+++|. ++.+.+++.++..++.+++.++.|.++||+|||+++.++.++.+++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 456677888888899999999999 779999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 008603 95 NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPS 174 (560)
Q Consensus 95 s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ 174 (560)
+++.++++|++.|++.+...+....+++|++|+++|++.+++.+....+|..+++.+... ..+..+||+.|.+.+++.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~~~~~~~~~~~~~~~~~ 158 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW--ILIHFSWQWAFIIEGVLG 158 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH--HHHhCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998655533 345568999999999988
Q ss_pred HHHHHhhheeccCChh
Q 008603 175 LIYFVLTIFYLPESPR 190 (560)
Q Consensus 175 ll~~il~~~~lpEsP~ 190 (560)
++..++..++.||+|+
T Consensus 159 ~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 159 IIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHhhheecCCCC
Confidence 8877776777777653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=177.22 Aligned_cols=188 Identities=29% Similarity=0.383 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+...+.+.+..+..+++........|.+.+++|. ++.+.+++.+...++.+++.++.|+++||+|||+++.++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC--CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 34455566667778888888888899999999999 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
+++.+++.++++++.+++.|++.|++.+...+....+++|.+|+++|++++++.+....+|..+++.+. ....+..+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~g~ 170 (398)
T TIGR00895 93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA--GWLIPVFGW 170 (398)
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH--HHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999986554 334456789
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCChhhhhhh
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESPRWLVSK 195 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~ 195 (560)
+..|++.+++.++..++..+++||+|++..++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK 202 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence 99999987777776666677889988765444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-18 Score=182.17 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
.+.+...+++++..++....+..+|.+.+++|+ ++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGL--SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 455566777888888888888899999999999 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 86 GGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 86 ~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
+.+++.++++++.+++.|++.|++.|...+....+++|++|+++|++++++.+....+|..+++.+... ..+..+||+
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~--l~~~~gw~~ 178 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA--IALHYGWRY 178 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcccHHH
Confidence 999999999999999999999999998889999999999999999999999999999999998655433 345679999
Q ss_pred HHHHHHHHHHHHHHhhheeccCChhh
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
.|++.+++.++..++..+++||+|++
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~~ 204 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQA 204 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHhh
Confidence 99999888777666556677888764
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=186.66 Aligned_cols=185 Identities=18% Similarity=0.004 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+.+...+++++++...+....+...|.+.+++|+ +.++.|++.+++.+++.++.++.|+++||+|||+++.++.++.
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 34456677778888888999999999999999999 7899999999999999999999999999999999998888887
Q ss_pred HHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008603 84 FIGGLVMLW-----SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM 158 (560)
Q Consensus 84 ai~~il~~~-----a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~ 158 (560)
++..+++++ +++++.++++|++.|++.+...+....+++|++|+++||+++++.+...++|..++..+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 777766654 589999999999999999999899999999999999999999999999999999986665433221
Q ss_pred -cccchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 159 -TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 159 -~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
...+||..|.+.+++.++..++.+++.++.|+
T Consensus 185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 12369999999888888877766777787774
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=176.76 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=160.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.++..+.+.++.+...++...+.+.+|.+.++++. ++.+.++..+.+.++..++.++.|.++||+|||++++++.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNA--GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 556677778888888888888888899999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
.+++.+++.++++++.+++.|++.|++.+...+..+.++.|.+|+++|++.+++......+|..+++.+.. ...+..+
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~~ 165 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA--ALIHVLP 165 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccC
Confidence 99999999999999999999999999999888888999999999999999999888777788888755543 3344568
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
||+.|++.+++.++.++..++..||+++
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999998888877766667788754
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=180.82 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
.++-+.+.+.+++...++.+-..+...|.+.++.++ |.++.|++.+.+.+.+.++.+++|.++||.++|+.+.+++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l--sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL--SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 456677889999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
.++..+++.++++++.+.+..+++|+.+|...|.|...+..++|+++||+..++.+.+.++|..+.+.+........+.+
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988866664344445569
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
||..|+++++++++..++.++.++|+|+.
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999953
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=178.98 Aligned_cols=184 Identities=23% Similarity=0.339 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+.....++++.++..++....++.+|.+.+++|+ ++.+.+++.+.+.++.+++.++.|+++||+|||++++++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL--TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45567788889999999999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
+++.+++.++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++......+|..+++.+.. ...+..+|
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~w 173 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS--LVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865553 34457799
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCChhhh
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESPRWL 192 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP~~L 192 (560)
|+.|++..++.++ .++.....||++++.
T Consensus 174 ~~~f~~~~~~~~~-~~~~~~~~p~~~~~~ 201 (496)
T PRK03893 174 RALFFIGILPIIF-ALWLRKNLPEAEDWK 201 (496)
T ss_pred HHHHHHHHHHHHH-HHHHHHhCCCchhhh
Confidence 9999876554444 333345668876553
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=179.08 Aligned_cols=183 Identities=23% Similarity=0.321 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHH-----HHHHHHHHHHHHHHHhhhCChHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEG-LIVAMS-----LIGATCITTCSGAIADWLGRRPMLIV 78 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~g-li~s~~-----~lG~iig~~~~G~LsDr~GRR~~lli 78 (560)
+.....++++.++.++|...++...|.+.++++. ++.+.+ +..+.. .++..++.++.|+++||+|||+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFP--AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 3467788899999999999999999999999998 444433 322222 23335788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH
Q 008603 79 SSVLYFIGGLVMLWSPNVY--------VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYC 150 (560)
Q Consensus 79 ~~ll~ai~~il~~~a~s~~--------~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~l 150 (560)
+.++..++.+++++++++. .++++|++.|++.+...+....+++|++|+++|++.+++.+...++|..+++.
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 46899999999999998888999999999999999999998888888777655
Q ss_pred HHHHHHh------ccccchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 151 MVFGMSL------MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 151 i~~~l~~------~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
+...... .+..+||+.|++..++.++ .++.....||+++
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~ 216 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEE 216 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHH
Confidence 5443321 2456999999876554332 2222334566543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=172.26 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.+...+++.++.+..........+.+|.+.+++|. ++++.++..+++.++..+++++.|.++||+|||++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGI--SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 455556666666666666666666788999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
.+++.+++.++++++.++++|++.|++.+...+....+++|++|+++|++++++.....++|..+++.+.. ...+..+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~--~l~~~~g 172 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS--FLGELIG 172 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999865553 4445679
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
||+.|++.+++.++..++.....||+|
T Consensus 173 w~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 173 WRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999988877776555455578765
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-19 Score=190.15 Aligned_cols=187 Identities=21% Similarity=0.282 Sum_probs=172.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 008603 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSS 80 (560)
Q Consensus 1 m~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ 80 (560)
|++..+.++++++.+++...|..++....+.+++.||+ +++..|++...+.+..++..|++|+++||+.||+++.++.
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni--~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~ 105 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNI--SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI 105 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCC--CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH
Confidence 45677888999999999999999999999999999999 7799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008603 81 VLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (560)
Q Consensus 81 ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~ 160 (560)
.++.++++..+++..||.++++|.+.|+|.+.+.++++.+++|++|..+|+++.+++++...+|..+|++....+.....
T Consensus 106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998665533332222
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
.||+.|...+++++++.+++.++.+|.+|
T Consensus 186 -~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 186 -WWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred -ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 39999999999999999999999988754
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=173.08 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.++.++.+++.+++.+++.....+.+|.+++++++ ++.+.+++.+.+.+++.++.++.|+++||+|||+++.++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45556677788889999999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 84 FIGGLVM---LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 84 ai~~il~---~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
+++.+++ .++++++.++++|+++|++.|...+.++.++.|..|.++|...+++.+..+.+|..+++++...
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999775 4688999999999999999999999999999998888877778999999999999998766543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-17 Score=171.18 Aligned_cols=166 Identities=19% Similarity=0.285 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008603 20 WDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVL 99 (560)
Q Consensus 20 ~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~l 99 (560)
.......+.+|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||+.++++.++.+++.+++.++++++.+
T Consensus 17 ~~~~~~~~~lp~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~ 94 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNA--SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94 (392)
T ss_pred HHHHHHhhhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 3334455779999999999 77999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
++.|++.|++.+...+....++.|.+|+++|++.+++.+....+|..+++.+.. ...+..+||+.|++.+++.++..+
T Consensus 95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~--~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH--LIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCcChHHHHHHHHHHHHHHHH
Confidence 999999999999988999999999999999999999999998888888865543 333456899999999988888777
Q ss_pred hhheeccCCh
Q 008603 180 LTIFYLPESP 189 (560)
Q Consensus 180 l~~~~lpEsP 189 (560)
+..+++||++
T Consensus 173 ~~~~~~~~~~ 182 (392)
T PRK10473 173 LSLFILKETR 182 (392)
T ss_pred HHHHHcCCCC
Confidence 7667778864
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-17 Score=174.92 Aligned_cols=219 Identities=12% Similarity=0.018 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKR-EFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~-~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
..+....+++++.+......+++.+.+.+ ++++ ++++.+++.++..+++.+.+++.|.++||+|+|+++.++.++.+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l--s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF--TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34556677778888888999998888776 8999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh--
Q 008603 85 IGGLVMLWS-----PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL-- 157 (560)
Q Consensus 85 i~~il~~~a-----~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~-- 157 (560)
+.++.++++ ++++.+++.|++.|++ +..++.....+++++|+++||+++++....+++|..+++.+.+....
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999887 8999999999999998 66778899999999999999999999988888888776665543221
Q ss_pred -c-------------cccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCcChHHHHHHHHH
Q 008603 158 -M-------------TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVE 223 (560)
Q Consensus 158 -~-------------~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~~~~~i~~l~~ 223 (560)
. +..+||.++++..++.++..++.+++.++.|. ++.+ .++.+. -.++.+.|+..+.+
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~---~~~~~~---vlk~~~~Wllslly 261 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS---IADQLP---VLQRLHLWLLSLLY 261 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC---HHHHHH---HhCCCchhHHHHHH
Confidence 0 13358888888888888777776777666542 0111 111222 23344568888888
Q ss_pred HHHhhhhhhHHHH
Q 008603 224 GLGVGGETSLEEY 236 (560)
Q Consensus 224 ~l~~g~~~t~~~~ 236 (560)
...++....+..+
T Consensus 262 ~~tFG~fvg~s~~ 274 (462)
T PRK15034 262 LATFGSFIGFSAG 274 (462)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-17 Score=170.96 Aligned_cols=175 Identities=11% Similarity=0.084 Sum_probs=152.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+++.+.+.++++.++.+.+....+..+|.+.+++|+ +.++.+++.+...++..++.++.|+++||+|||+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL--PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345566677888889989888889999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
.+++.++++++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.+....+|..+++.+.... .....+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~g 160 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL-LARSIE 160 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 9999999999999999999999999999998888899999999999999999988888888877775544222 234569
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 008603 163 WRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il 180 (560)
||+.|.+.+++.++..++
T Consensus 161 w~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 161 WYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887776554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=175.20 Aligned_cols=180 Identities=22% Similarity=0.315 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
...+.++++.++..++....++.+|.+.+++|. ++.+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE--SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 345667788888999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 86 GGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 86 ~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
+.+++.++++++.++++|++.|++.+...+....++.|.+|+++|+++.++.....++|..+++.+. ....+..+||+
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~--g~l~~~~gw~~ 165 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG--GLLVEYASWHW 165 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHhhccHHH
Confidence 9988889999999999999999999999999999999999999999999999999999999986554 34445679999
Q ss_pred HHHHHHHHHHHHHHhhheeccCCh
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
.|.+.....++..++.....|+.+
T Consensus 166 ~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 166 IFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999988877776666666666543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-16 Score=169.67 Aligned_cols=179 Identities=19% Similarity=0.326 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG 87 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~ 87 (560)
...+.+..++...+.....+.+|.+.++++. +..+.++..+++.++..++.++.|+++||+|||++++++.++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 95 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNA--DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC 95 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence 3344555566667778888889999999999 77999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Q 008603 88 LVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLML 167 (560)
Q Consensus 88 il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f 167 (560)
+++.++++++.++++|+++|++.+...+....++.|.+|+++|++.+++......+|..+++.+... ..+..+||+.|
T Consensus 96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~--l~~~~gw~~~f 173 (413)
T PRK15403 96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAA--LMHFVHWKVLF 173 (413)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHH
Confidence 9999999999999999999999987777778889999999999999999999999999998665533 34557999999
Q ss_pred HHHHHHHHHHHHhhheeccCChh
Q 008603 168 GVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 168 ~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
++.+++.++..++.++.+||+++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999888877666667898753
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-17 Score=172.12 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
..++++.+..-. ....++.+|.+++++|. +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++++++.+
T Consensus 13 ~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~ 89 (393)
T PRK09705 13 VLVLIGLNMRPL-LTSVGPLLPQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGAL 89 (393)
T ss_pred HHHHHHHHcchh-hhccchhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344444443322 25667889999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc-cchhHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA-PSWRLML 167 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~-~~Wr~~f 167 (560)
+++++++++.+++.|++.|++.+...+..+.++.+++| ++|++++++......+|..++..+...+ .+. .+||..+
T Consensus 90 ~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l--~~~~~~w~~~~ 166 (393)
T PRK09705 90 MRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL--VQHSETWYQTL 166 (393)
T ss_pred HHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHH
Confidence 99999999999999999999999999999999999997 7899999999988888888886655332 233 4899988
Q ss_pred HHHHHHHHHHHH
Q 008603 168 GVLFIPSLIYFV 179 (560)
Q Consensus 168 ~i~ai~~ll~~i 179 (560)
.+.+++.++..+
T Consensus 167 ~~~~~~~~~~~~ 178 (393)
T PRK09705 167 AWWALPAVVALF 178 (393)
T ss_pred HHHHHHHHHHHH
Confidence 777666554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-17 Score=169.07 Aligned_cols=165 Identities=17% Similarity=0.292 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008603 21 DNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLL 100 (560)
Q Consensus 21 ~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~li 100 (560)
......|.+|.+.+++|+ ++.+.+++.+++.++..++.++.|.++||+|||+.+.++.++.+++.+++.++++++.++
T Consensus 6 ~~~~~~p~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 6 AIDMYLPALPVIAADFGV--SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 345667889999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
+.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+.. ...+..+||+.|++.+++.++..++
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG--WLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999865543 3345568999999988888887766
Q ss_pred hheeccCCh
Q 008603 181 TIFYLPESP 189 (560)
Q Consensus 181 ~~~~lpEsP 189 (560)
..++.||++
T Consensus 162 ~~~~~~~~~ 170 (377)
T PRK11102 162 VFFFIPETL 170 (377)
T ss_pred HHHhCCccC
Confidence 667778764
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=164.78 Aligned_cols=167 Identities=12% Similarity=0.066 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM 90 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~ 90 (560)
+.++.++..+........+|.+..+++. ++.+.+++.++..++.+++.++.|+++||+|||++++++.++.+++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTG--SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 3456667777777788888988899988 88999999999999999999999999999999999999999998888888
Q ss_pred Hhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 91 LWSP-----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 91 ~~a~-----s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
.+++ +++.+++.|++.|++.+...+....+++|++|+++|++.+++.+....+|..+++.+.. ...+..+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~g~~~ 159 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG--LMYATLGIKW 159 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHhhHHH
Confidence 8877 99999999999999999999999999999999999999999999999999999965543 3345568999
Q ss_pred HHHHHHHHHHHHHHhh
Q 008603 166 MLGVLFIPSLIYFVLT 181 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~ 181 (560)
.|++.++..++..++.
T Consensus 160 ~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 160 AIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988887776655443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=182.03 Aligned_cols=165 Identities=32% Similarity=0.508 Sum_probs=144.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~ 120 (560)
+.....+..+++++|.++|+++.|+++|++|||+++++++++.+++.++.++++|++.+++.|++.|++.+...+++..+
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~ 195 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL 195 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHH
Q 008603 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLE 200 (560)
Q Consensus 121 isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~e 200 (560)
++|+++++.|+.+.++ ......+..+.+...... . .+||+.+++..+++++.+++ +++.||||||+..++|.++
T Consensus 196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~--~--~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYI--T--RDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHH--H--hhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHH
Confidence 9999999999999999 544444444443222222 1 28999999999999987766 6777799999999999999
Q ss_pred HHHHHHHHhcC
Q 008603 201 AKKVLQSLRGR 211 (560)
Q Consensus 201 a~~~l~~l~~~ 211 (560)
+.+.+++..+.
T Consensus 270 a~~~l~~~a~~ 280 (521)
T KOG0255|consen 270 AIKILKKIAKL 280 (521)
T ss_pred HHHHHHHHHhh
Confidence 99999887654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=167.22 Aligned_cols=174 Identities=29% Similarity=0.495 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM 90 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~ 90 (560)
+++.++..++.....+.+| ++.+++|. ++.+.+++.+++.++..++.++.|.++||+|||++++++.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGL--SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTT--TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 5667778888888888999 89999999 77999999999999999999999999999999999999999999996666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 008603 91 LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVL 170 (560)
Q Consensus 91 ~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ 170 (560)
.++++.+.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+. ....+..+||+.|++.
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~--~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLG--GFLISYFGWRWAFLIS 157 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHCHHCCHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchh--hhhhhccccccccccc
Confidence 67688889999999999999999999999999999999999999999999999999995544 4455677899999999
Q ss_pred HHHHHHHHHhhheeccCCh
Q 008603 171 FIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 171 ai~~ll~~il~~~~lpEsP 189 (560)
+++.++.+++..++.++.|
T Consensus 158 ~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHHHHHCCC---S
T ss_pred cchhhhhhhhHhhhhhhcc
Confidence 9999998776555665544
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=165.74 Aligned_cols=175 Identities=19% Similarity=0.246 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
+.+.+..++..+......|.+|.+.+++|. ++++.+++.+++.++..++.++.|+++||+|||+.+.++.++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 333333445556677778888999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
++.++++++.+++.|++.|++.+...+....++.|.+|++++++..+.......+|..+++.+.. ...+..+||+.|+
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g~~~~~~ 164 (401)
T PRK11043 87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA--WLLNHFGWQAIFA 164 (401)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCChHHHHH
Confidence 99999999999999999999988887888889999999999999888888778888888855543 3445679999999
Q ss_pred HHHHHHHHHHHhhheeccCC
Q 008603 169 VLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 169 i~ai~~ll~~il~~~~lpEs 188 (560)
+.+++.++..++..+ ++|+
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~ 183 (401)
T PRK11043 165 TLFAITLLLILPTLR-LKPS 183 (401)
T ss_pred HHHHHHHHHHHHHHH-cCCC
Confidence 998888876655443 4444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=169.52 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
.+...+++.......+.......+|++.++ |+ ++.+.+++.+++.++.+++.++.|+++||+|||++++++.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~--s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CC--CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 334445555556666666677788998888 99 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHH-HHHHHHHHHHhccc
Q 008603 86 GGLVMLWSP----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMF-LAYCMVFGMSLMTA 160 (560)
Q Consensus 86 ~~il~~~a~----s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~-lg~li~~~l~~~~~ 160 (560)
+.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++.+....+|.. .+++...... ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~--~~ 183 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA--WF 183 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--Hh
Confidence 988887753 7888899999999999988888888899999999999999999888888864 4443322222 23
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
.+||+.|++.+++.++..++..+++||+|+.
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~ 214 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQS 214 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence 4899999999988888777777888998764
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=169.80 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
+-..+.+.+++....+-......+.|.....+|+ +.-+..+++...++|..+++...|.++|++|||+.+.+......
T Consensus 77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~ 154 (528)
T KOG0253|consen 77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG 154 (528)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence 3344556666666655555566677888888998 77999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchh
Q 008603 85 IGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWR 164 (560)
Q Consensus 85 i~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr 164 (560)
+..++...++|+..+++.|.+.|+|.|+ .+...++-.|..|...|...+-+. .++.+|.++..++..+. ..+.+||
T Consensus 155 v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v--m~~~gwr 230 (528)
T KOG0253|consen 155 VFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV--MSNFGWR 230 (528)
T ss_pred HHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH--HHhhhHH
Confidence 9999999999999999999999999999 677888889999999999998888 88899999886666444 3466999
Q ss_pred HHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCcC
Q 008603 165 LMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRED 213 (560)
Q Consensus 165 ~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~ 213 (560)
|..+....|..+.+. ..+++|||||+++.+|+++||.+.++++.+.|.
T Consensus 231 ~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg 278 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDYKALETLHKIARMNG 278 (528)
T ss_pred HHHHHHHhHHHHHHH-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcC
Confidence 998888877766544 478899999999999999999999999887664
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.8e-17 Score=168.65 Aligned_cols=232 Identities=19% Similarity=0.182 Sum_probs=186.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+....+....++..+.++.....+++.+.+++++++ |+.|.++++++..+...+.+++.|.+.||+|.|++..++.++
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L--S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l 88 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL--SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL 88 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC--CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence 344555666677777888888999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 83 YFIGGLVMLWSP---NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 83 ~ai~~il~~~a~---s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
.++-++..+++. +++.+++++++.|++.+-+ ++...+++.++|++++|.+++++. ++|+|..+.+++.+.....-
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 999999988865 4569999999999987766 777889999999999999999999 99999998877776554322
Q ss_pred cc-chhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhc-CcChHHHHHHHHHHHHhhhhhhHHHHH
Q 008603 160 AP-SWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRG-REDVAGEMALLVEGLGVGGETSLEEYI 237 (560)
Q Consensus 160 ~~-~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~-~~~~~~~i~~l~~~l~~g~~~t~~~~i 237 (560)
.. .|+....+..++.++.+++.+++..|.|....+.++.. . .+++. .++.+.|...+.+..++|.+..+..++
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-~----~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l 241 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-P----AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYL 241 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc-h----hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 39999999999999988888899999886421111111 1 12222 235667889999999999999987776
Q ss_pred hccccc
Q 008603 238 IGPAND 243 (560)
Q Consensus 238 ~~~~~~ 243 (560)
..+.++
T Consensus 242 ~~~~~~ 247 (417)
T COG2223 242 PMYLVT 247 (417)
T ss_pred HHHHHH
Confidence 554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=168.80 Aligned_cols=174 Identities=21% Similarity=0.209 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q 008603 13 IGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW 92 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~ 92 (560)
+++++..++....+...|++.+++|+ +..+.+++.++..++.+++.++.|+++||+|||++++++.++.+++.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 35677778888889999999999999 7799999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH-HHHHHHhccccchhHHHHHHH
Q 008603 93 SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYC-MVFGMSLMTAPSWRLMLGVLF 171 (560)
Q Consensus 93 a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~l-i~~~l~~~~~~~Wr~~f~i~a 171 (560)
+++++.+++.|++.|++.+...+....+++|++|+++|++.+++.+....+|..+++. ... ......+||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF--GIAELYSWHWVFIVPG 157 (379)
T ss_pred hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH--HHHhcCCchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998863 322 2334568999999999
Q ss_pred HHHHHHHHhhheeccCChh
Q 008603 172 IPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 172 i~~ll~~il~~~~lpEsP~ 190 (560)
++.++..++.+++.||+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHHHHHheeeCCCcc
Confidence 8888877777778888764
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=167.00 Aligned_cols=177 Identities=25% Similarity=0.375 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 008603 15 NLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAM-----SLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 15 ~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~-----~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il 89 (560)
++...++...++...+++.+++..+.+..+.+.+.+. .+++..++.++.|+++||+|||++++++.++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888886532234555554433 33444578899999999999999999999999999999
Q ss_pred HHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh----
Q 008603 90 MLWSPNVY--------VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL---- 157 (560)
Q Consensus 90 ~~~a~s~~--------~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~---- 157 (560)
+++++++. .+++.|+++|++.+...+..+.+++|.+|+++|++.+++.+....+|..+++.+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99988864 588899999999999999999999999999999999999999999999988765543321
Q ss_pred --ccccchhHHHHHHHHHHHHHHHhhheeccCChhhh
Q 008603 158 --MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWL 192 (560)
Q Consensus 158 --~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L 192 (560)
....+||+.|.+.+++.++..+ .....||+|++.
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 197 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFE 197 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHHH-HHHhcCCChhHH
Confidence 1356899999888777665443 345567876543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-16 Score=164.10 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
....+.+..++...+.....+.+|. +++++|. ++.+.|++.+++.++.++++++.|.++||+|||++++++.++.++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 4445667777777778888888885 6889999 789999999999999999999999999999999999999998888
Q ss_pred HHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 008603 86 GGLVMLWS--------PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL 157 (560)
Q Consensus 86 ~~il~~~a--------~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~ 157 (560)
+.+++.++ .+++.+++.|++.|++.+...+....++.|.+|+++|++++++.+....+|..+++.+. ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--~~l 171 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG--VLL 171 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH--HHH
Confidence 76665543 25678999999999999999999999999999999999999999888888888885544 344
Q ss_pred ccccchhHHHHHHHHHHHHHHH
Q 008603 158 MTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 158 ~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
.+..+||..+++..+..++..+
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~ 193 (399)
T PRK05122 172 YHWGGLAGLGLLIMLLALLGLL 193 (399)
T ss_pred HHcccHHHHHHHHHHHHHHHHH
Confidence 4567899998887776655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=160.82 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
.++.+.++.++.........+.+|. +.+++|+ ++.+.|++.+++.++..+++++.|+++||+|||+.++++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~--s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF--GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL 93 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence 3444555666666667777788874 6789999 789999999999999999999999999999999999998887776
Q ss_pred HHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 008603 86 GGLVMLW--------SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL 157 (560)
Q Consensus 86 ~~il~~~--------a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~ 157 (560)
+.+.+.+ .++++.++++|++.|++.+...+....++.|.+|+++|++++++.+....+|..+++.+. ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~--~~l 171 (392)
T PRK12382 94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG--LLL 171 (392)
T ss_pred HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH--HHH
Confidence 6543321 357889999999999999998888889999999999999999999998889988886554 333
Q ss_pred ccccchhHHHHHHHHHHHHH
Q 008603 158 MTAPSWRLMLGVLFIPSLIY 177 (560)
Q Consensus 158 ~~~~~Wr~~f~i~ai~~ll~ 177 (560)
....+||..+.+..+..++.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~ 191 (392)
T PRK12382 172 HSHFGFAALALTTMVLPLLA 191 (392)
T ss_pred HhccChHHHHHHHHHHHHHH
Confidence 45568998877665554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=160.27 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+......++.+..++..+......+.+|.+.+++|. ++.+.+++.+++.++.+++.++.|+++||+|||+.++++.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNV--REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 344444445555555556667777889999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
.+++.+++.++++++.+++.|++.|++.+...+....+..|.++.++|++++++.+....++..+++.+.. ...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g 160 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG--LLTTLFG 160 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccC
Confidence 99999999999999999999999999999888888889999999999999999988888888888855543 3345568
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
||+.|++.+++.++..++..++.||+|.
T Consensus 161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 161 WRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 9999999888877766666667888754
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=161.59 Aligned_cols=178 Identities=20% Similarity=0.215 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEP---TIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~---~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
..+.++.++.++......+.+|.+.+++|.+... ...|++.++..++..++.++.|+++||+|||+.++++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 3445677777888888888999999999984322 2358899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 86 GGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 86 ~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
+.+++.++++++.+++.|++.|++.+. .+....++.+.+|+++|++++++......+|..+++.+.. ...+..+||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~ 173 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG--LLADSYGLRP 173 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHH
Confidence 999888899999999999999998654 5777788999999999999999999999999988865553 3344568999
Q ss_pred HHHHHHHHHHHHHHhhheeccCCh
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
.|++.+++.++..++..+++||.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999888877776667777764
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=162.08 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 008603 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSS 80 (560)
Q Consensus 1 m~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ 80 (560)
|++.....+.+.++.++...+.....+.+|.+.+++|. +..+.|++.+.+.++..+++++.|+++||+|||+.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~ 78 (381)
T PRK03633 1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL--PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS 78 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55544556666788888889899999999999999999 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 81 VLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 81 ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
++.+++.++++++++++.++++|++.|++.+...+.....+.+..++++|++++++.+...++|..+++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888888888899999999999999999999999998665533
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=168.93 Aligned_cols=190 Identities=21% Similarity=0.277 Sum_probs=156.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q 008603 2 GGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREF-HLE-----TEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPM 75 (560)
Q Consensus 2 ~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~-gls-----~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ 75 (560)
|+.....+++.+++|+..||.+.++.+.|.+...+ +-+ ..+...+.+..+.++|.++|++++|++.|++|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 45667788899999999999999999999877765 222 356788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q 008603 76 LIVSSVLYFIGGLVMLWSP-------NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLA 148 (560)
Q Consensus 76 lli~~ll~ai~~il~~~a~-------s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg 148 (560)
+...++++++++++++++. -.++++..|++.|+|.|+-+|...+.++|.+..+.||...+..-.+..+|...+
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999777642 257888999999999999999999999999999999999988777666666665
Q ss_pred HHHHHHHHhc-----c--------ccchhHHHHHHHHHHHHHHHhhheeccCChhhh
Q 008603 149 YCMVFGMSLM-----T--------APSWRLMLGVLFIPSLIYFVLTIFYLPESPRWL 192 (560)
Q Consensus 149 ~li~~~l~~~-----~--------~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L 192 (560)
..+...+... + ..-||..|.+.++|+++.+.. ...+|||+++-
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYT 252 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHH
Confidence 4444333210 1 125999999999999886654 67789999875
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=159.36 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI-VSSVLYFIGGLVM 90 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll-i~~ll~ai~~il~ 90 (560)
+.+++.++......+.+|. +++++|. ++.+.|++.+++.++.++..++.|.++||+|||+.++ .+.++.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 4567777878888887774 6788999 7899999999999999999999999999999887655 4556666777888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH--hhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 91 LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLL--NTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 91 ~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~--~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
+++++++.+++.|++.|.+.+...+....++.|..|++.|+.. ++......++|..+++.+. ....+..+||+.|+
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~--~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLA--FWLALGFGFTVMFL 159 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHH--HHHHHhcccHHHHH
Confidence 8899999999999999888887778888889999888777654 5777777888888885544 33445668999999
Q ss_pred HHHHHHHHHHHhhheeccCChhh
Q 008603 169 VLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 169 i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
+.+++.++..++.++++||.|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 160 TAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred HHHHHHHHHHHHHHHhCCCcccC
Confidence 99998888777767778988754
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=163.86 Aligned_cols=183 Identities=14% Similarity=0.103 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
+...+...+++.....+........|++++ +|+ ++++.+++.+++.++..++.++.|+++||+|||++++++.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGF--SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCC--CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 334455555666666666666777888776 588 78999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008603 85 IGGLVMLWS----PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (560)
Q Consensus 85 i~~il~~~a----~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~ 160 (560)
++.+++.+. +++..+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+.... ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~-~~~~ 181 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG-MAWF 181 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH-HHHh
Confidence 888877654 46778889999999999998888889999999999999999999999999888875444322 2223
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
.+||..|++.+++.++..++.++++||+|+.
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 212 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQS 212 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence 5899999999999888777777788988754
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-15 Score=159.64 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIG 86 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~ 86 (560)
..+.+++.+++.++.+....+.+|.+++++|+ +..+.|++.+.+.+++++++++.|+++||+|||+.++++.++++++
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~--s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTL--TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc----
Q 008603 87 GLVMLW---SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT---- 159 (560)
Q Consensus 87 ~il~~~---a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~---- 159 (560)
.+++.. .++++.+++.|++.|++.|...+....++.+..|+++|++..++.+...++|..+++.+...+....
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~ 161 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ 161 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 888654 4589999999999999999999999999999999999999999999999999999977765553221
Q ss_pred --------------------ccchhHHHHHHHHHHHHHHHhhh-eeccC
Q 008603 160 --------------------APSWRLMLGVLFIPSLIYFVLTI-FYLPE 187 (560)
Q Consensus 160 --------------------~~~Wr~~f~i~ai~~ll~~il~~-~~lpE 187 (560)
..+||+.|.+.+++.++..++.. ...||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA 210 (410)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23699999988887777554432 22454
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=170.70 Aligned_cols=185 Identities=16% Similarity=0.224 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HcCCCCChHHHHHHHHHHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKR----------------------EFHLETEPTIEGLIVAMSLIGATCIT 60 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~----------------------~~gls~s~~~~gli~s~~~lG~iig~ 60 (560)
.++.+.+.++++..+...+....+...+.+.+ ++++ ++.+.|++.+++.++++++.
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW--SGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCC--CHHHhhHHHHHHHHHHHHHH
Confidence 45677778888888888888888887777766 6777 78999999999999999999
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHH
Q 008603 61 TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS--PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQ 138 (560)
Q Consensus 61 ~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a--~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~ 138 (560)
++.|+++||+|||+++.++.++.+++.+++.++ .+++.+++.|++.|++.+...+....+++|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999998888877543 568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 139 FTGCVGMFLAYCMVFGMSLMTA-PSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 139 ~~~~lG~~lg~li~~~l~~~~~-~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
....+|..+++.+... ..+. .+||+.|++.+++.++..++.+++.+|+|+.
T Consensus 174 ~~~~~g~~i~~~l~~~--l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~ 225 (465)
T TIGR00894 174 SGFQLGTFIFLPISGW--LCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI 225 (465)
T ss_pred HHHHHHHHHHHHHHHH--HHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence 9999999998666543 3345 4999999999999888777766777888753
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=153.80 Aligned_cols=168 Identities=26% Similarity=0.398 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il 89 (560)
.+.++.+...++.....+..|.+.++++. ++.+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGL--SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 44566777788888888899999999998 7899999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q 008603 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGV 169 (560)
Q Consensus 90 ~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i 169 (560)
+.++++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+... ..+..+||+.|++
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~ 158 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL--LAESLGWRWLFLI 158 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999665543 3445579999999
Q ss_pred HHHHHHHHHHhh
Q 008603 170 LFIPSLIYFVLT 181 (560)
Q Consensus 170 ~ai~~ll~~il~ 181 (560)
.+++.++..++.
T Consensus 159 ~~~~~~~~~~~~ 170 (352)
T cd06174 159 LAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHHHH
Confidence 988888766553
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=153.21 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=140.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 008603 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSS 80 (560)
Q Consensus 1 m~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ 80 (560)
|+|... ...++.++..+.........+.+.++++. ++...+++.+.+.+++.+..++.|+++||+|||++++++.
T Consensus 1 ~~~~f~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~ 75 (393)
T PRK11195 1 MSKGFY---AIMAAQFFSALADNALLFAAIALLKELHY--PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIAN 75 (393)
T ss_pred CCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHH
Confidence 455443 34455666555444445555566788888 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008603 81 VLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (560)
Q Consensus 81 ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~ 160 (560)
++.+++.+++.++.+. ++.|+++|++.+...+....++.|++|+++|++++++.+....+|..+++.+...+. +.
T Consensus 76 ~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~--~~ 150 (393)
T PRK11195 76 GIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA--DP 150 (393)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 9999888887776664 788999999999999999999999999999999999999999999999966654433 22
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
.|+..+++.+...++. ++..+++||+|.
T Consensus 151 -~~~~~~~i~~~~~~~~-~~~~~~l~~~~~ 178 (393)
T PRK11195 151 -HAEAALAVCALIYLLA-ALFNLFIPRLGA 178 (393)
T ss_pred -HHHHHHHHHHHHHHHH-HHHHhcCCCCcc
Confidence 3777777776655443 334567888753
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-14 Score=151.57 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML 91 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~ 91 (560)
.++.++.........+.++.+.+++|. ++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++.
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~ 96 (402)
T TIGR00897 19 YIGVVVFMTGDGLEQGWLSPFLKALGL--SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFI 96 (402)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHhCC--CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455556688999 889999999999999999999999999999999999999999888876543
Q ss_pred ---h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHH-HHHHHHHHHHHhccccchhHH
Q 008603 92 ---W-SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGM-FLAYCMVFGMSLMTAPSWRLM 166 (560)
Q Consensus 92 ---~-a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~-~lg~li~~~l~~~~~~~Wr~~ 166 (560)
. .++++.+++.|++.|++.+...+....++.+.+|+++|++++++.+...++|. .+++.+. ....+..+|+..
T Consensus 97 ~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~--~~l~~~~g~~~~ 174 (402)
T TIGR00897 97 VFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS--SYAIPAFGEMNT 174 (402)
T ss_pred HHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccchHHH
Confidence 3 35788889999999999988877788889999999999999999999999886 4564433 233344565444
Q ss_pred HHHHHHHHHHHHHhhheeccCC
Q 008603 167 LGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 167 f~i~ai~~ll~~il~~~~lpEs 188 (560)
++......++..++..++.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
T TIGR00897 175 LWSALAFVLTGGVIALFSNKDI 196 (402)
T ss_pred HHHHHHHHHHHHHHHHhccCCC
Confidence 4333333223233333444543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-14 Score=151.29 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=148.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 008603 1 MGGAALVAIAAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVS 79 (560)
Q Consensus 1 m~~~~li~i~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~ 79 (560)
|||..+.+ .++.++.........+.+| ++.+++|. ++.+.|++.+...++.+++.++.|+++||+|||++++++
T Consensus 5 ~~~~~~~l---~~~~~~~~~g~~~~~~~l~~~l~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~ 79 (395)
T PRK10054 5 LRRSTSAL---LASSLLLTIGRGATLPFMTIYLSRQYSL--SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLA 79 (395)
T ss_pred CCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHH
Confidence 34554433 3445555566666666554 67788999 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 80 SVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 80 ~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
.++.+++.+++.++++++.++++|++.|.+.+...+....+.+|.+|+++|++..++.....++|..+++.+...+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~--~ 157 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV--M 157 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999998888888889999999999999999999999999999999976655443 2
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
.+|+..|++.++..++..++..+++|+.
T Consensus 158 -~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 158 -QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred -hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4899999988888777665555556654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-14 Score=155.82 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=136.5
Q ss_pred HHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHhhhhHHHH
Q 008603 24 TIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV---MLWSPNVYVL 99 (560)
Q Consensus 24 ~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il---~~~a~s~~~l 99 (560)
.....+|. +.+.+|. +....+++.+...++.+++.++.|+++||+|||+.++++.++..+..+. ...+++...+
T Consensus 268 ~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 268 MLLTYMPSYLSHNLHY--SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 33444554 5567888 6677778888888999999999999999999999988877654433322 2234567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
++++++.|++.+........++.|++|++.|+++.++......++..+++.+...+. ....+|+..+++..+++++.++
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~-~~~~~~~~~~~~~~~~~~i~~~ 424 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV-ESTQNLMMPAYYLMVVAVIGLI 424 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHH
Confidence 889999999888877788889999999999999988743334444444433332221 1223578777777777766555
Q ss_pred hhheeccCChhhhhhh-----cchHHHHHHHHHHhcCcChHHHHHHHH
Q 008603 180 LTIFYLPESPRWLVSK-----GRMLEAKKVLQSLRGREDVAGEMALLV 222 (560)
Q Consensus 180 l~~~~lpEsP~~L~~~-----gr~~ea~~~l~~l~~~~~~~~~i~~l~ 222 (560)
. .+++||+|+|+.++ +|.+|+++.+.+++. +++.++.++.
T Consensus 425 ~-~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~i~ 469 (490)
T PRK10642 425 T-GVTMKETANRPLKGATPAASDIQEAKEILVEHYD--NIEQKIDDID 469 (490)
T ss_pred H-HHHhccccCCCCCCccccccchhhHHHHhhcccc--cccchhhhcc
Confidence 4 45679999998765 899999999999874 3344444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-14 Score=150.11 Aligned_cols=172 Identities=17% Similarity=0.216 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM 90 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~ 90 (560)
.+..++.....+...+.++ ++.+++|. ++.+.|++.+...+...+..++.|+++||+|||+++.++.++.+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 16 LIDNMLVVLGFFVVFPLISIRFVDQLGW--AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3455555555555566555 67889999 88999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 008603 91 LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVL 170 (560)
Q Consensus 91 ~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ 170 (560)
.++++++.+++.|++.|++.+...+...+++.|.+|+++|++++++.+...++|..+++.+...+. ..+||+.|++.
T Consensus 94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~---~~g~~~~f~~~ 170 (400)
T PRK11646 94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL---QYDFRLVCATG 170 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHH
Confidence 999999999999999999999888888999999999999999999999999999999966554443 45899999998
Q ss_pred HHHHHHHHHhhheeccCC
Q 008603 171 FIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 171 ai~~ll~~il~~~~lpEs 188 (560)
++..++..++..++.||.
T Consensus 171 ~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 888777665555566653
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-14 Score=151.17 Aligned_cols=177 Identities=12% Similarity=0.206 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTI-EGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~-~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
+.+.+|+-.|+.-+ ....+.+.|++.+++|+ ++++ .|.+.++++.++.+..+++|+++||+|.|+++.++.+...+
T Consensus 28 ~~~~lC~fGF~~e~-R~n~s~a~p~L~~elgl--T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQF-RPGESFITPYLLTVLNF--TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHHh-hchHHHHHHHHHHHcCC--CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 34434444444333 56667788999999999 7788 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 86 GGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 86 ~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
..+++++++++..+.+.|++.|++.|... ++..+++.++|+++|++++++......+|.++++.+...+ ...+||.
T Consensus 105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll---~s~gWr~ 180 (511)
T TIGR00806 105 VWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL---VTLGWIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCchh
Confidence 99999999999999999999999999998 9999999999999999999999999999999987666552 2457876
Q ss_pred HHHH--HHHHHHHHHHhhheeccCChh
Q 008603 166 MLGV--LFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 166 ~f~i--~ai~~ll~~il~~~~lpEsP~ 190 (560)
.+.+ ..+.+.+..++..+++|-.++
T Consensus 181 y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 181 YSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 4422 233333334445667774443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=154.72 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=146.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
++|+++++..+.....+. ....+...|.+++++|+ +..+.+++.++.. ...+..+++|+++||+|||++++++.++
T Consensus 25 ~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgl--s~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNL--TQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc--CHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 344444443333333332 34555677889999999 7789888887633 3445677899999999999999999999
Q ss_pred HHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008603 83 YFIGGLVMLWS------PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS 156 (560)
Q Consensus 83 ~ai~~il~~~a------~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~ 156 (560)
++++.++++++ ++++.+++.|++.|++.+...+.+...+.+++| ++||++.++......+|..+...+.....
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 689999999999999999998999999999997 78999999999999999875433333322
Q ss_pred hccccchhHHHHHHHHHHHHHHHhhheeccC--ChhhhhhhcchHHHHHHHHH
Q 008603 157 LMTAPSWRLMLGVLFIPSLIYFVLTIFYLPE--SPRWLVSKGRMLEAKKVLQS 207 (560)
Q Consensus 157 ~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpE--sP~~L~~~gr~~ea~~~l~~ 207 (560)
. .+|+..|++.+++.++..++.++++++ .|++..++++.+++.+.+++
T Consensus 180 ~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~ 229 (591)
T PTZ00207 180 S---DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL 229 (591)
T ss_pred H---HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence 2 368888888888888877766666654 44555444444444443333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=149.40 Aligned_cols=151 Identities=19% Similarity=0.305 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLA 102 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~ 102 (560)
....+.+|.+++++|. +.++.+++.+...++..++.++.|+++||+|||+++.++.++.+++.+++ .+++++.+++.
T Consensus 17 ~~~~~~lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 93 (355)
T TIGR00896 17 TSVGPLLPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG 93 (355)
T ss_pred ccCcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 4557789999999999 88999999999999999999999999999999999999998888888777 77889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIY 177 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~ 177 (560)
|++.|++.+...+..+.++.|.+| ++|++++++.+...++|..+++.+...+......+||+.|.+.+++.++.
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999988888888999886 68999999999999999988866554333222234999988777655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=164.36 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
+.++..++..+......+..+..++.+.++|++ +..+.|++.+.+.++++++.++.+++.||+|||+++.++++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~l--ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 33 VFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKL--STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCC--CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 344555667777777788888899999999999 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh---------------------------------------------------hHHHHHHHHHHHHHHHHHHH
Q 008603 86 GGLVMLWSP---------------------------------------------------NVYVLLLARLLDGFGIGLAV 114 (560)
Q Consensus 86 ~~il~~~a~---------------------------------------------------s~~~lii~R~l~G~g~G~~~ 114 (560)
+.+++++.+ .+..++++|+++|++.+...
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999988753 25677899999999999999
Q ss_pred HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc--cc------------------cchhHHHHHHHHHH
Q 008603 115 TLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM--TA------------------PSWRLMLGVLFIPS 174 (560)
Q Consensus 115 ~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~--~~------------------~~Wr~~f~i~ai~~ 174 (560)
+....|+.|++|+++|++..++.+....+|..+++++...+... +. .+|+..|++.+++.
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997766544321 10 13788898888888
Q ss_pred HHHHHhhheeccC
Q 008603 175 LIYFVLTIFYLPE 187 (560)
Q Consensus 175 ll~~il~~~~lpE 187 (560)
++..+.. +++|+
T Consensus 271 ~l~~v~l-~~~p~ 282 (633)
T TIGR00805 271 LLTSIPF-FFFPK 282 (633)
T ss_pred HHHHHHH-HhCcc
Confidence 8866554 44444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=166.90 Aligned_cols=169 Identities=11% Similarity=0.070 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---hhhhHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML---WSPNVYVL 99 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~---~a~s~~~l 99 (560)
.....+.+.+..+++.+.+....+++.+++.++.+++++++|+++||+|||++++++.++.+++.+++. ++++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (1146)
T PRK08633 27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA 106 (1146)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 344445666777788755567789999999999999999999999999999999998877666555444 35789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc-------ccchhHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT-------APSWRLMLGVLFI 172 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~-------~~~Wr~~f~i~ai 172 (560)
+++|++.|++.+...++...+++|++|+++|++++++.+....+|.++++.+...+.... ..+|++.+.+..+
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL 186 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999977665443320 1245555544444
Q ss_pred HHHHHHHhhheeccCChhh
Q 008603 173 PSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 173 ~~ll~~il~~~~lpEsP~~ 191 (560)
..++..++..+++||+|..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 187 AVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred HHHHHHHHHHhcCcCCCCC
Confidence 4444444445667887654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=147.49 Aligned_cols=173 Identities=17% Similarity=0.145 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q 008603 13 IGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW 92 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~ 92 (560)
++.++..+........+|.+.++++. ++.+.|++.+...++.++++++.|+++||+|||+++.++.++.+++.+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 101 (417)
T PRK10489 24 IARFISIFGLGLLGVAVPVQIQMMTG--STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence 34555556666777788988889988 7899999999999999999999999999999999998888777766655432
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Q 008603 93 -----SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLML 167 (560)
Q Consensus 93 -----a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f 167 (560)
.++++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+... ..+..+|++.|
T Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~--l~~~~~~~~~~ 179 (417)
T PRK10489 102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGL--LIAAGGVAWNY 179 (417)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHH--HHHHHhhHHHH
Confidence 56788999999999999998888889999999999999999999999999999998665533 33445799999
Q ss_pred HHHHHHHHHHHHhhheeccCChh
Q 008603 168 GVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 168 ~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
++.++..++..++ .+.+|++|+
T Consensus 180 ~~~~~~~~~~~~~-~~~l~~~~~ 201 (417)
T PRK10489 180 GLAAAGTFITLLP-LLRLPALPP 201 (417)
T ss_pred HHHHHHHHHHHHH-HHhCCCCCC
Confidence 8877776665443 456677643
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=146.43 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCChHHH-HHHHHHHH
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMS-LIGATCITTCSGAIADWLGRRPML-IVSSVLYF 84 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~-~lG~iig~~~~G~LsDr~GRR~~l-li~~ll~a 84 (560)
.....+..++.+.......+.+| ++++++|+ ++++.|++.++. .++.+++.+++++ +||+|||+.+ +.+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHA--RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGV 93 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHH
Confidence 33445556777777776777666 57889999 779999997665 4566666766666 9999998865 45566666
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcch--hhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 85 IGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIR--GLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 85 i~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~R--G~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
++.++++++++++.+++.+.+.+...+...+....++.+..+++.| +..+++.+...++|..+++.+. ....+..+
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~--~~l~~~~g 171 (393)
T PRK15011 94 LACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA--YALAMGFS 171 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH--HHHHHhcC
Confidence 7777788889998877666555555556667788888888776655 4456788888899999995544 44445679
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
||..|++.++..++..++.++++||.|
T Consensus 172 w~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 172 FTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 999999999888887777777788875
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=152.20 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGA-VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~-lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
+.++..+++.++....+...++.. +.-+.+|.++ ...+.+.+.++++++++++.++++.+.||+.-.+.+....+..
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~--~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKL--VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccch--hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 344445666667777777665543 3346688888 7799999999999999999999999999999899999999998
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh----cc
Q 008603 84 FIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL----MT 159 (560)
Q Consensus 84 ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~----~~ 159 (560)
.+..++..+..|++.+++.|++.|+..+..+|.+..++..++.+++|++.++++.....+|.+++.++..++.. ..
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 88888888899999999999999999999999999999999999999999999999999999999998888653 34
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
..+||++|.+.++++++..+++++++|+.|.
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 5699999999999999999999999999996
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-14 Score=152.14 Aligned_cols=177 Identities=18% Similarity=0.116 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
+.++..+.++...........+..+|.+.+++|. +..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+
T Consensus 18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 4444455555444444445567778999999999 77999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 85 IGGLVMLWSPNVYVLLL-ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 85 i~~il~~~a~s~~~lii-~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
++.++++++++++.+++ .|++.|++.+...+....++.+++| ++|++++++.+....+|..+++.+. ....+..+|
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~--~~l~~~~gw 172 (455)
T TIGR00892 96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLN--QYLFESFGW 172 (455)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHH--HHHHHHhCh
Confidence 99999999999988765 5799999999876777788889996 7899999999999999988885544 333455689
Q ss_pred hHHHHHHHHHHHHHHHhhheecc
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLP 186 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lp 186 (560)
|+.|++.+++.++..+..+++.+
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888766554444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=142.32 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChHH-HHHHHHHHHHHHHHHHhh---
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-----GRRPM-LIVSSVLYFIGGLVMLWS--- 93 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-----GRR~~-lli~~ll~ai~~il~~~a--- 93 (560)
...++.+|.+.+++|+ +.++.|++... .+...+ .++.|+++||+ |||+. ++.+.++.++..+++++.
T Consensus 5 ~~~~~~~~~~~~~~g~--s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNV--SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred hhHHhHHHHHHHHcCC--CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4456788999999999 77999999655 444444 89999999998 89886 566777777776677776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc--------hhH
Q 008603 94 PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS--------WRL 165 (560)
Q Consensus 94 ~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~--------Wr~ 165 (560)
.+.+.+.+..++.+++.+...+....++.|++|+++|++++++.....++|..+++.+...+ ....+ ||.
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVL--ASPEFANTGLITLWGY 158 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHH--hhhcccccccccccHH
Confidence 45666777778888888888899999999999999999999999999999999886555333 33334 999
Q ss_pred HHHHHHHHHHHHHHhhheeccCCh
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
.|++.+++.++..++.++..||++
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999888776655555567753
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=145.92 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChHH-HHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-----GRRPM-LIVSSVLY 83 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-----GRR~~-lli~~ll~ 83 (560)
.+.+..+.++......++.+|.+.++.|. +..+.+.. +...... +..++.|+++||+ |||+. ++++.++.
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~--~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTVENI--DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 44455567777778888899999999998 77888886 3333333 6889999999999 99875 66777777
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc-
Q 008603 84 FIGGLVMLWS---PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT- 159 (560)
Q Consensus 84 ai~~il~~~a---~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~- 159 (560)
+++.+++++. .+++.+.+.+++.+++.+...+....++.|++|+++|++++++......+|..+++.+.. ...+
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~--~l~~~ 169 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL--WLADR 169 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHhc
Confidence 7777777664 468889999999999999999999999999999999999999999999999999855443 3334
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
..+||..|++.+++.++..+.. ++.||+|+
T Consensus 170 ~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~~ 199 (491)
T PRK11010 170 YLGWQGMYWLMAALLIPCIIAT-LLAPEPTD 199 (491)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH-HhcCCCcc
Confidence 4699999999998877765543 34788753
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=137.16 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChH-HHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-----GRRP-MLIVSSVLYFI 85 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-----GRR~-~lli~~ll~ai 85 (560)
..-++.+++........+|.+.++.|. +.++.|++..+... .+..+++|+++||+ |||+ .++++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGL--DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 345667788788888889988888999 88999999777765 68899999999999 8775 78888888888
Q ss_pred HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc-cc
Q 008603 86 GGLVMLWS---PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT-AP 161 (560)
Q Consensus 86 ~~il~~~a---~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~-~~ 161 (560)
+..++.+. .+++.+++..++.++..+...+....++.|++|+++|++++++......+|..++..+.. ...+ ..
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~--~l~~~~~ 158 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL--WLADRVL 158 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH--HHHhccc
Confidence 88777776 357777888888888888888999999999999999999999999988999988855443 3333 35
Q ss_pred chhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 162 SWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 162 ~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
+||..|++.++..++..+. .++.||+++
T Consensus 159 gw~~~f~i~a~~~l~~~l~-~~~~~e~~~ 186 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALT-TLWAPEPEV 186 (402)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 9999999988887765543 456777654
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=147.27 Aligned_cols=161 Identities=21% Similarity=0.312 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHH
Q 008603 18 QGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVY 97 (560)
Q Consensus 18 ~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~ 97 (560)
..+.....+..++++..++|- .....|+.++..++..++.++.|.++|.||||++++++.++..++.++++.++|..
T Consensus 56 ~~~~~~~~a~~l~~I~~diG~---~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~ 132 (599)
T PF06609_consen 56 AYFVLVLPASILPYINADIGG---SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN 132 (599)
T ss_pred HHHHHhccHHHHHHHHHhcCC---CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH
Confidence 334444456678899999985 35677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 008603 98 VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIY 177 (560)
Q Consensus 98 ~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~ 177 (560)
.++.+-.+.|++.|... .....++|+.|.|.|+....+..........+++... -......+|||.|++..+...+.
T Consensus 133 ~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia--~~~~~~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 133 TFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIA--QLFAAHSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHH--HHhccCCCcchHHHHHHHHHHHH
Confidence 99999999999988775 4566799999999998777665544433333332222 22334569999999999988877
Q ss_pred HHhhhee
Q 008603 178 FVLTIFY 184 (560)
Q Consensus 178 ~il~~~~ 184 (560)
+++.+++
T Consensus 210 ~vl~~~f 216 (599)
T PF06609_consen 210 LVLIFFF 216 (599)
T ss_pred HHHHHHH
Confidence 6654433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=137.66 Aligned_cols=160 Identities=11% Similarity=0.003 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH-HHHHHHH-H
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSS-VLYFIGG-L 88 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~-ll~ai~~-i 88 (560)
+.+.++...+......|.+|.+.+++|. +..+.|++.+++.+...+++++.|+++||+|||....... +..++.. .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~--s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGL--GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5566777777778889999999999999 8899999999999999999999999999999864332221 1111222 2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
...++++++.+++.|++.|.+.+...+....+..+. .++|++..+....+.++|..+++.+. ....+..+||..|+
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~--g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALF--GGLIGMFDEQNILA 162 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHH--HHHHHHcChhHHHH
Confidence 334678899999999999998888878888887664 57789999999999999999995544 44456679999998
Q ss_pred HHHHHHHH
Q 008603 169 VLFIPSLI 176 (560)
Q Consensus 169 i~ai~~ll 176 (560)
+.++..++
T Consensus 163 ~~~~~~~~ 170 (382)
T TIGR00902 163 ILTAGLAF 170 (382)
T ss_pred HHHHHHHH
Confidence 87665333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-12 Score=134.40 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
.+...+++.........+.+| ++.+++|+ ++.+.|++.++..++..+++++.|+++||+|||+.++.+.+..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 344455566666666777766 45677999 889999999999999999999999999999999999887666654433
Q ss_pred HH---Hhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008603 89 VM---LWS-----PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (560)
Q Consensus 89 l~---~~a-----~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~ 160 (560)
.. .+. ..+..+++.|++.|++.+...+....+..+..+. ++...+....+.++|..+++.+... .. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~--l~-~ 158 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGI--LF-S 158 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhh--hh-c
Confidence 22 122 1234556778888888888878887787776433 3455667777778888888665432 22 3
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
.+||..|++.+++.++..++.++..||.|
T Consensus 159 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 159 IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 48999999998888887666555556654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=118.14 Aligned_cols=137 Identities=31% Similarity=0.468 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 008603 50 AMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI 129 (560)
Q Consensus 50 s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~ 129 (560)
+...++.+++.++.|++.||+|||+.+.++.++.+++.+++.++++++.+++.+++.|++.+...+....++.|.+|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 45567889999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 130 RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 130 RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
|++.+++.+....+|..+++.+.. ...+..+|++.|++.+++.++..++..++.||+
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGG--VLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHH--HHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999865553 334567899999998888888777766666663
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=143.54 Aligned_cols=153 Identities=24% Similarity=0.397 Sum_probs=136.1
Q ss_pred HcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHH
Q 008603 35 EFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLLLARLLDGFGIGL 112 (560)
Q Consensus 35 ~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~--s~~~lii~R~l~G~g~G~ 112 (560)
+++. ++.+.+++.++++.|++++.++.|+++||+|-|+++.++.++.+++++++.++- +++.+++.|+++|++.|.
T Consensus 67 ~~~w--s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 67 EYDW--SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred eecC--CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 4556 779999999999999999999999999999999999999999999999998765 456789999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 113 AVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA-PSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 113 ~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~-~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
..++...+.+.++|+++|++..++......+|.+++ +.....+.+. .||+..|++.++.+++.+++.+++..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~--mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIIT--MPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999888 3333344444 8999999999999999988877888888853
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=143.98 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIA-GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~-~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll~ai~~il 89 (560)
++..+...+...... .+..++++++|+ +.++.+++.+.+.+...+..+++|+++|| +|||++++++.++++++.++
T Consensus 20 ~~~~~~er~~~y~~~~~l~~yl~~~lg~--~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~ 97 (489)
T PRK10207 20 FFVELWERFGYYGVQGILAVFFVKQLGF--SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFM 97 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 333344444444333 455678889999 77888999999988888888999999999 99999999999999999999
Q ss_pred HHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Q 008603 90 MLWSPNVY-VLLLARLLDGFGIGLAVTLVPIYISETAPPE--IRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLM 166 (560)
Q Consensus 90 ~~~a~s~~-~lii~R~l~G~g~G~~~~~~~~~isE~~p~~--~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~ 166 (560)
++++++.. .++++|+++|++.|...+....+++|.+|++ +|+...+++....++|..+++.+. ..+.+..+||+.
T Consensus 98 ~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~--g~l~~~~gw~~~ 175 (489)
T PRK10207 98 TGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA--PVIADKFGYSVT 175 (489)
T ss_pred HHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH--HHHHHhhChHHH
Confidence 99887644 4558999999999999889999999999987 457789999999999999985554 444556699999
Q ss_pred HHHHHH
Q 008603 167 LGVLFI 172 (560)
Q Consensus 167 f~i~ai 172 (560)
|++.++
T Consensus 176 F~i~~i 181 (489)
T PRK10207 176 YNLCGA 181 (489)
T ss_pred HHHHHH
Confidence 998755
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=142.08 Aligned_cols=164 Identities=10% Similarity=0.076 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLY-IKRE--FHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVLYFI 85 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~-i~~~--~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll~ai 85 (560)
.+.+..+...+......+.+|. +.++ +|+ +..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.++
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~--s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGF--SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3444555555655656666664 4555 888 78999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 86 GGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI---RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 86 ~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~---RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
+.++++++++++.++++|++.|++.|...+....++++.+|++. |+.+.++.+...++|..+++.+.. ...+..+
T Consensus 92 g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g--~l~~~~g 169 (475)
T TIGR00924 92 GHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG--VIAENYG 169 (475)
T ss_pred HHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH--HHHHhcC
Confidence 99999998888899999999999999988999999999998764 888999999999999999966553 4445568
Q ss_pred hhHHHHHHHHHHHHH
Q 008603 163 WRLMLGVLFIPSLIY 177 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~ 177 (560)
|++.|++.++..++.
T Consensus 170 ~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 170 YHVGFNLAAVGMVIG 184 (475)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999888655543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-12 Score=133.73 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh----HHHHHHHHHHHHHHHH
Q 008603 14 GNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRR----PMLIVSSVLYFIGGLV 89 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR----~~lli~~ll~ai~~il 89 (560)
.++..........|.+|.+.+++|. +..+.|++.+++.++.+++.++.|+++||+||| +.+.+..++. ....
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~~g~--s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKGQGY--TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCC--CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 3555566678888889988899999 889999999999999999999999999999994 3332222221 2223
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q 008603 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGV 169 (560)
Q Consensus 90 ~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i 169 (560)
...+++++.+++.|++.|++.+...+....++.++ .++|++..+....+.++|..+++.+. ..+.+..+||..|++
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lg--g~l~~~~g~~~~f~~ 163 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALT--GKLVSWFGEQAILWI 163 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHH--HHHHHHcChhHHHHH
Confidence 33467899999999999999888888887777776 45688888889999999999995544 445566799999988
Q ss_pred HHHHHHHHHHhhheeccCC
Q 008603 170 LFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 170 ~ai~~ll~~il~~~~lpEs 188 (560)
.++..++..++ .++.||.
T Consensus 164 ~~~~~~~~~~~-~~~~~~~ 181 (382)
T PRK11128 164 LTAGVASMLLG-QLLRPTI 181 (382)
T ss_pred HHHHHHHHHHH-HHccCCC
Confidence 77665554433 3445654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=148.55 Aligned_cols=144 Identities=12% Similarity=0.096 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 43 TIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIV---SSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPI 119 (560)
Q Consensus 43 ~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli---~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~ 119 (560)
...+++.+++.+.+++.++++|.++||+|||+++.. +.++.++..+...+.++++.++++|+++|++.+.+.++...
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567888899999999999999999999999997543 22222222222334589999999999999999999999999
Q ss_pred HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 120 YISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 120 ~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
++.+++|+++|++++++.++..++|.++++.+.. .+....+|++.|.+..+..++ .++..+++|+++
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g--~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 198 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGG--LATISGNFVILVALLMGIAVL-GWLASLFIPKTG 198 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCC
Confidence 9999999999999999999999999999966554 444566899998555454444 344455666653
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=137.88 Aligned_cols=161 Identities=17% Similarity=0.263 Sum_probs=128.8
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCC-hHHHHHHHHHHHHHHHHHHhhhh------
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW----LGR-RPMLIVSSVLYFIGGLVMLWSPN------ 95 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr----~GR-R~~lli~~ll~ai~~il~~~a~s------ 95 (560)
.+.+++.+++|+ ++.+.|++.++..+...+..|+.|.++|| +|| |+.++++.++.+++.+++.+.++
T Consensus 21 ~l~~~~~~~~g~--s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 98 (437)
T TIGR00792 21 YLLFFYTDVLGL--SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK 98 (437)
T ss_pred HHHHHHHHccCC--CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence 356678888999 88999999999999999999999999997 687 46788888888888887776653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHHHH
Q 008603 96 VYVLLLARLLDGFGIGLAVTLVPIYISETA-PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL-----MTAPSWRLMLGV 169 (560)
Q Consensus 96 ~~~lii~R~l~G~g~G~~~~~~~~~isE~~-p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~-----~~~~~Wr~~f~i 169 (560)
+..+++.+++.+++.+...+...++.+|+. ++++|++.+++.+.+..+|..++..+...+.. .+..+||+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 456677788888888887777788889987 46889999999998888887766544332221 134589999999
Q ss_pred HHHHHHHHHHhhheeccCCh
Q 008603 170 LFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 170 ~ai~~ll~~il~~~~lpEsP 189 (560)
.+++.++..++.+++.||.+
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHcCCEecC
Confidence 99998888777777888875
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-11 Score=138.20 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008603 46 GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125 (560)
Q Consensus 46 gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~ 125 (560)
.+...+..++.+++.++.|+++||+|||++++++.++.+++.++++++++...+++++++.|++.+...+....+++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456667889999999999999999999999999999999999999888888888899999988888899999999999
Q ss_pred CCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 126 PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 126 p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
|++.|++++++.+.+..+|.++++.+...+... .....|++.+++.++..++. +++||+
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~-~~LPET 736 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLA-LKLPDT 736 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 999999999999999999999997665433321 34567777777777655554 456987
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-11 Score=127.39 Aligned_cols=170 Identities=16% Similarity=0.133 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML 91 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~ 91 (560)
+.+++.........+.+| ++.+++|+ ++.+.|++.+++.++.++++++.|+++||+|||+.++++..+.++......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 94 (420)
T PRK09528 17 LFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFF 94 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 445555555555566655 56667999 889999999999999999999999999999999998886665554432211
Q ss_pred ---hhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 92 ---WSP-----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 92 ---~a~-----s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
.++ .+...++++++.|.+.....+....+..+. .+.+++..+....+.++|..+++.+...+. + .+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~--~-~~~ 169 (420)
T PRK09528 95 IYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILF--N-INP 169 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHH--h-cCc
Confidence 111 111122233333333333333333333222 245677788888888899988866654332 2 389
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
+..|++.+++.++..++.++..+|.|
T Consensus 170 ~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 170 QINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hHhHHHHHHHHHHHHHHHhccccccc
Confidence 99999988888777666555555543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-11 Score=124.97 Aligned_cols=233 Identities=20% Similarity=0.166 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
.+..+.++..+|+.++.+.....++|.+++.|++ +..+.+++..+++.|+.++.++.|.+.+|+|+|+.++.++.+++
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~l--s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a 89 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDL--TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA 89 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445566667788889888889999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc---
Q 008603 85 IGGLVML---WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM--- 158 (560)
Q Consensus 85 i~~il~~---~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~--- 158 (560)
+++++.. -..++..++.+-|+.|.|.+...+...+|++.+.+++.-...+++.|..+.+|..+++++.-.+...
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 9999885 4568899999999999999999999999999999999889999999999999999997776655441
Q ss_pred --------------cccchhHHHHHHHHHHHHHHHhhhe-eccCChhhhhhhcchHHHHHHHHHHhcCcChHHHHHHHHH
Q 008603 159 --------------TAPSWRLMLGVLFIPSLIYFVLTIF-YLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVE 223 (560)
Q Consensus 159 --------------~~~~Wr~~f~i~ai~~ll~~il~~~-~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~~~~~i~~l~~ 223 (560)
....|+..|...+...++..+.... -.|+.+.-..++.+...+ .. .+..++....+..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~--~~--~~l~~~~~~~~gvl~~ 245 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSA--GL--SSLFQNKHLRLGVLAI 245 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccc--hH--HHHHhChHHHHHHHHH
Confidence 1224777777777666665544322 235443211111111111 11 1112233344556666
Q ss_pred HHHhhhhhhHHHHHhccccc
Q 008603 224 GLGVGGETSLEEYIIGPAND 243 (560)
Q Consensus 224 ~l~~g~~~t~~~~i~~~~~~ 243 (560)
.+..|.|.++.+++..+..+
T Consensus 246 FlYVG~Eva~gsfl~~y~~~ 265 (422)
T COG0738 246 FLYVGAEVAIGSFLVSYLEE 265 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHh
Confidence 66778888888776554444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=131.34 Aligned_cols=114 Identities=21% Similarity=0.201 Sum_probs=104.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~ 120 (560)
+....|.+.+++.++.++.++..|.++||+|||++++++++..+++..+.+.+.|+..+++.|++.|+..|.. .++.++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence 5577899999999999999999999999999999999999999999999999999988888899999999977 778899
Q ss_pred HHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 121 isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
++|++++|.|++.++..+..+.+|.++||.++..+
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 99999999999999999999999999995555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=118.83 Aligned_cols=163 Identities=26% Similarity=0.367 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH-HHHHHHHHHHHHHHHHHh
Q 008603 15 NLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRP-MLIVSSVLYFIGGLVMLW 92 (560)
Q Consensus 15 ~fl~g~~~~~~~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~-~lli~~ll~ai~~il~~~ 92 (560)
.+.............|.+.++ ++. +..+.+++.+...++.+++.++.+++.||+|||+ .+.++.++..++.+++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGL--SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556655555 488 7799999999999999999999999999999999 999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 008603 93 SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFI 172 (560)
Q Consensus 93 a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai 172 (560)
.++.+.+++..++.|++.+...+....++.|..|+++|++.+++.+...++|..+++.+. ....+..+|+..|.+.++
T Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~--g~l~~~~~~~~~~~~~~~ 339 (352)
T cd06174 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA--GLLLDTGGYGGVFLILAA 339 (352)
T ss_pred hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccCcchHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999985554 444456789999999999
Q ss_pred HHHHHHHhh
Q 008603 173 PSLIYFVLT 181 (560)
Q Consensus 173 ~~ll~~il~ 181 (560)
+.++..++.
T Consensus 340 ~~~i~~i~~ 348 (352)
T cd06174 340 LALLAALLL 348 (352)
T ss_pred HHHHHHHHh
Confidence 988876653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-11 Score=130.11 Aligned_cols=162 Identities=14% Similarity=0.173 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAG-AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~-~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll~ai~~il 89 (560)
++..+...+....... ..+++.+++|+ +.++.+++.+.+........+++|+++|| +|||++++++.++.+++.++
T Consensus 27 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~--s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l 104 (500)
T PRK09584 27 FSIELWERFGYYGLQGIMAVYLVKQLGM--SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL 104 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 3333444444434444 44567789999 67888888877766666666799999999 59999999999999999888
Q ss_pred HHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Q 008603 90 MLWSP-NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI--RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLM 166 (560)
Q Consensus 90 ~~~a~-s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~--RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~ 166 (560)
+++++ +...+.++|+++|++.|...+....+++|.+|++. |..+.++.+...++|..+++.+.. ...+..+||+.
T Consensus 105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g--~l~~~~g~~~~ 182 (500)
T PRK09584 105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP--WLAAKYGWSVA 182 (500)
T ss_pred HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH--HHHHhhCHHHH
Confidence 88864 56677788999999999988888899999998654 445788888999999999966553 44456799999
Q ss_pred HHHHHHHHHHH
Q 008603 167 LGVLFIPSLIY 177 (560)
Q Consensus 167 f~i~ai~~ll~ 177 (560)
|++.++..++.
T Consensus 183 F~i~~i~~~i~ 193 (500)
T PRK09584 183 FALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHH
Confidence 99987654443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-11 Score=127.04 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=129.6
Q ss_pred HHHHHHHHHcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh----hH
Q 008603 27 GAVLYIKREFHLET------EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP----NV 96 (560)
Q Consensus 27 ~~lp~i~~~~gls~------s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~----s~ 96 (560)
...+.+.++.+.+. .....+.+.++..++.+++.++.|+++||+|||+++.++.++.+++.+++.... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 33444455555421 236678999999999999999999999999999999999999888876666532 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHH-HHHHHHHHHHHHHHHHHHhcc-c---cchhHHHHHHH
Q 008603 97 YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQ-FTGCVGMFLAYCMVFGMSLMT-A---PSWRLMLGVLF 171 (560)
Q Consensus 97 ~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~-~~~~lG~~lg~li~~~l~~~~-~---~~Wr~~f~i~a 171 (560)
+.+++.+++.|++.+...+....+++|.+|++.|++..++.+ ....+|..+++.+...+.... . .+|+.+|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999888888999999999999999999997 567889988876664443221 1 47999999999
Q ss_pred HHHHHHHHhhheeccCC
Q 008603 172 IPSLIYFVLTIFYLPES 188 (560)
Q Consensus 172 i~~ll~~il~~~~lpEs 188 (560)
++.++..++.++++||+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999888888888887
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-11 Score=126.51 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIA-GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGR-RPMLIVSSVLYFIGGL 88 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~-~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GR-R~~lli~~ll~ai~~i 88 (560)
+++.+|+.+....... ++.+++.+++|+ +..+.|++.+++.++.++++++.|.++||+|| |+++.++.++..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHF--SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4555666666666664 455678888999 88999999999999999999999999999965 7788888888888888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----H----hhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYI----S----ETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~i----s----E~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~ 160 (560)
+..+.++++.+.+.|++.|++.+...+....+. . |......|.+..+ .+|..+++++.... ...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l--~~~ 156 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL--DIE 156 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh--ccc
Confidence 888888999999999999998766655544432 2 2222233444333 35666664444322 223
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeccCChh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
..|+ .|++.++..++.+++ .+++||+|+
T Consensus 157 ~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~ 184 (418)
T TIGR00889 157 LSNI-QLYITAGSSALLGVF-ALTLPDIPV 184 (418)
T ss_pred chhH-HHHHHHHHHHHHHHH-HhcCCCCCC
Confidence 3454 455666666665544 567888763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-10 Score=121.56 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=122.3
Q ss_pred HHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008603 28 AVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLD 106 (560)
Q Consensus 28 ~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~ 106 (560)
..| ++++++++ ++.+.+++.+...++.+++.++.|+++||+|||+.+..+.+..++....+.+.++.+.+++.+++.
T Consensus 238 ~~p~~l~~~~~~--~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 238 NMPLFIINELHL--PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344 56778898 778889888887788888999999999999999988877766666555555677788888899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheecc
Q 008603 107 GFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLP 186 (560)
Q Consensus 107 G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lp 186 (560)
+++.|...+..+.+..|.+|. +|++++++.+...++|..+++.+.. ...+..+|+..|++.+++.++.+++ .++.|
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G--~i~~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 391 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAG--IVAEIWNYHAVFWFALVMIIATLFC-LLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHH-HHhhc
Confidence 988888877888889999986 5999999998888999999966553 3445568999999888888776554 44445
Q ss_pred C
Q 008603 187 E 187 (560)
Q Consensus 187 E 187 (560)
|
T Consensus 392 ~ 392 (393)
T PRK15011 392 D 392 (393)
T ss_pred C
Confidence 4
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-11 Score=127.15 Aligned_cols=146 Identities=13% Similarity=0.177 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~ 120 (560)
+..+.|.+.++..++.+++.++.|+++||+|||+.+.++.++.+++.+++.++++.+.+++.+++.|++.+...+....+
T Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999999999999999999999988888888999999999999999998888888899
Q ss_pred HHhhcCCcchhhHhhH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 121 ISETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 121 isE~~p~~~RG~~~~l-~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
+.|.+|++.|++..+. ++....+|..+++.+. ....+..+|+..|.+.+++.++..++.++.+++.
T Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~--G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLA--GNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHcCccceeeeeeehHHHHHHHHHHHHHHHH--HHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999887655 5667788888885554 4445566899999998888877766656665554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-12 Score=130.72 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=139.5
Q ss_pred HHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 008603 34 REFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLA 113 (560)
Q Consensus 34 ~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~ 113 (560)
++...+.+.++.|++.++..+..++.+++.|.+.||+|+|..++++++++..+++++++.+++++++++|.++|+|.+..
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHH
Confidence 33444446689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcc-hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 114 VTLVPIYISETAPPEI-RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 114 ~~~~~~~isE~~p~~~-RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
.++...++++.+|.+. |++++|+.-...++|..++ +.++..+++..|.+..|.+++++.++-..+.++.++.+
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvg--PpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVG--PPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceec--CCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 9999999999999866 7999999999999999999 66777788889999999999999999888877777654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=121.14 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhh--HHHHHHH
Q 008603 25 IAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPN--VYVLLLA 102 (560)
Q Consensus 25 ~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s--~~~lii~ 102 (560)
.....+.+.++++. +..+.+.+.+...++.++++++.|+++||+|||+.+.++.++.+++.+++.+.++ ...+++.
T Consensus 224 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (377)
T TIGR00890 224 LIGLYKPYGQSLGL--SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLAT 301 (377)
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 33445555677887 6788899999999999999999999999999999999999888888887776653 2334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYF 178 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~ 178 (560)
.++.|++.+...+..+.+++|.+|+++|++..++.+....+|..+++.+. ....+..+|+..|.+.+++.++.+
T Consensus 302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA--SHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH--HHHHhhhchhhHHHHHHHHHHHhc
Confidence 78888888888778888999999999999999999999999999986554 334456789999988888776643
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=124.56 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh--hH--HHH
Q 008603 24 TIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NV--YVL 99 (560)
Q Consensus 24 ~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~--s~--~~l 99 (560)
......|++.+++|. +.....+......+..+++.++.++++||+|||+.++++.++.+++.+++.... +. ...
T Consensus 289 ~~~~~~p~i~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 289 VVLYYAPEIFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred HHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 344456888888888 445556666677788889999999999999999999999999888877765431 11 122
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH----hccccchhHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGL-AVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS----LMTAPSWRLMLGVLFIPS 174 (560)
Q Consensus 100 ii~R~l~G~g~G~-~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~----~~~~~~Wr~~f~i~ai~~ 174 (560)
+++-++.+++.+. ..+..+.+++|.+|+++|++++++.+....+|.++++....... ..+..+|+..|++.+++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 446 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence 2333444444443 23667899999999999999999999999999888755443222 234568888898888888
Q ss_pred HHHHHhhheeccCC
Q 008603 175 LIYFVLTIFYLPES 188 (560)
Q Consensus 175 ll~~il~~~~lpEs 188 (560)
++.+++.+++.||+
T Consensus 447 ~~~~~~~~~~~~e~ 460 (479)
T PRK10077 447 VLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHhccccC
Confidence 88777777788887
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-10 Score=121.80 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCChHHHHHH-HHHHHHHHHHHHhh
Q 008603 19 GWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD----WLGRRPMLIVS-SVLYFIGGLVMLWS 93 (560)
Q Consensus 19 g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD----r~GRR~~lli~-~ll~ai~~il~~~a 93 (560)
-+......+.++.+.+++|. ++...+++..+..+..++.+++.|.++| |+|||+.++++ .+..+++.+++.++
T Consensus 17 q~~~~l~~~~l~~yl~~lg~--~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~ 94 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGI--PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA 94 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 34445556666667788999 8899999999999999999999999999 59999887764 66666666777776
Q ss_pred hhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcch--hhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 94 PNVY-----------------VLLLARLLDGFGIGLAVTLVPIYISETAPPEIR--GLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 94 ~s~~-----------------~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~R--G~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
++.. .++++-.+..++.+...+...++++|++|+++| +.++++.+.+.++|..+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6542 233333445568888888889999999999865 679999999999999999876654
Q ss_pred HHhccc-------------cchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 155 MSLMTA-------------PSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 155 l~~~~~-------------~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
...... .+.|..|++.++..++..+++.++.+|.|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 175 SGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 311110 16789999999999998888899999976
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=125.94 Aligned_cols=156 Identities=18% Similarity=0.167 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhhh-
Q 008603 18 QGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLYFIGGLVMLWSP- 94 (560)
Q Consensus 18 ~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ai~~il~~~a~- 94 (560)
..+........+| ++.+++|+ ++.+.+.+.+.+.+...++.+++|+++||+ |||++++++.++.+++.++++...
T Consensus 21 e~fs~Yg~~~~L~~yL~~~lgl--s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~ 98 (493)
T PRK15462 21 EYFSFYGMRALLILYLTNQLKY--DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI 98 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444 56777899 789999999999999999999999999999 999999999999999887776543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 008603 95 NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPE--IRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFI 172 (560)
Q Consensus 95 s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~--~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai 172 (560)
+...+.++..+..++.|...+...++++|.+|++ +|..+.++.....++|.++++.+.. ...+..+|++.|.+.++
T Consensus 99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g--~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG--YAQEEYSWAMGFGLAAV 176 (493)
T ss_pred chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH--HHHhhhChHHHHHHHHH
Confidence 2233344444555666776677788999999986 7999999999999999999966654 44456689999998776
Q ss_pred HHHHH
Q 008603 173 PSLIY 177 (560)
Q Consensus 173 ~~ll~ 177 (560)
..++.
T Consensus 177 gm~l~ 181 (493)
T PRK15462 177 GMIAG 181 (493)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=123.33 Aligned_cols=170 Identities=16% Similarity=0.086 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
.+++..++...........+| ++++++|+ +..+.++..+...++.+++.++.|+++||+|||+.+.+...+.+++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGF--SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 344444444444444455566 66778999 778999999999999999999999999999999877665444443332
Q ss_pred H--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH-HHHHHHHHHHHHHh--------
Q 008603 89 V--MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYCMVFGMSL-------- 157 (560)
Q Consensus 89 l--~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l-G~~lg~li~~~l~~-------- 157 (560)
+ ....++...+.+.+++.|++..........+..|.+|++.||++.++.+...++ |..+++.+...+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 2 223456666777888888655444344456778999999999999999988886 65676544433322
Q ss_pred --ccccchhHHHHHHHHHHHHHHHhh
Q 008603 158 --MTAPSWRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 158 --~~~~~Wr~~f~i~ai~~ll~~il~ 181 (560)
....+|+..|++..+..++.+++.
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHH
Confidence 004579999988877777765543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-10 Score=118.77 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLA 102 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~ 102 (560)
......+|.+..+.+. ...++..+.+.++.+++.++.|++.||+|||+.+..+.++.+++.+++.+.++.+.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (399)
T PRK05122 233 GTIATFITLYYAARGW----DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIG 308 (399)
T ss_pred HHHHHHHHHHHHHccc----ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333444544455565 234556677788889999999999999999999999988888888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhh
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
.++.|++.+...+.....+.|.+|++.|++..++.+....+|..+++.+. ....+..+|+..|.+.+++.++..++..
T Consensus 309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 309 AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA--GLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888889999999999999999999999988775443 3444556899999998888888766554
Q ss_pred eeccC
Q 008603 183 FYLPE 187 (560)
Q Consensus 183 ~~lpE 187 (560)
++.++
T Consensus 387 ~~~~~ 391 (399)
T PRK05122 387 LLYRR 391 (399)
T ss_pred Hhccc
Confidence 44333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=123.36 Aligned_cols=172 Identities=14% Similarity=0.058 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q 008603 13 IGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW 92 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~ 92 (560)
+..+.............|++.+++|. +....++......++.+++.++.|+++||+|||+.+.++.++.+++.+++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T TIGR00879 291 LQWFQQFTGINAIMYYSPTIFENAGV--STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368 (481)
T ss_pred HHHHHHHhCCeehHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445567888888998 5577888888999999999999999999999999999988887777666652
Q ss_pred -----hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008603 93 -----SP------NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP 161 (560)
Q Consensus 93 -----a~------s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~ 161 (560)
.+ +...+....++.+.......+....+++|.+|++.|++.+++.+...++|.++++.+.. ...+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~--~~~~~~ 446 (481)
T TIGR00879 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP--TMLESI 446 (481)
T ss_pred HhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 11 22222223332222222233556678899999999999999999999999998865543 333456
Q ss_pred chhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 162 SWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 162 ~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
+|++.|++.++++++.+++.+++.||+
T Consensus 447 ~~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 447 GVGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred CccceehhHHHHHHHHHHHHheecccC
Confidence 899999999999888888777888886
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-10 Score=118.18 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008603 24 TIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLAR 103 (560)
Q Consensus 24 ~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R 103 (560)
.....+|.+.++.|. ++...+.+.+...++.+++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-
T Consensus 238 ~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK11551 238 FLLNWLPSLLVGQGL--SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAG 315 (406)
T ss_pred HHHHHHHHHHHhCCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334456777777888 778899999999999999999999999999999999887777777777777777887788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhh
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
++.|++.+...+..+.++.|.+|++.|++..++.+....+|..+++.+...+.. ...+|...+++.....++..++.+
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA-LGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc-cCCchHHHHHHHHHHHHHHHHHHH
Confidence 889998888888889999999999999999999999999999998665543322 233566666666666555444433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-10 Score=118.56 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLA 102 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~ 102 (560)
.......|.+.++.+. + ..++....+.++.++++++.|++.||+|||+.+.++..+.+++.+++.+.++.+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (392)
T PRK12382 233 AVIGTFVSLYFASKGW--A--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAG 308 (392)
T ss_pred hHHHHHHHHHHHhcCC--c--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 3344445545555666 2 34556667778888999999999999999999999998888888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhh
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
.++.|++.+...+.....+.|.+|+++||+.+++.+....+|..+++.+. ....+..+|+..|.+.+++.++..++.+
T Consensus 309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA--GMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999999885544 3445567899999999988888776655
Q ss_pred eec
Q 008603 183 FYL 185 (560)
Q Consensus 183 ~~l 185 (560)
++.
T Consensus 387 ~~~ 389 (392)
T PRK12382 387 LSF 389 (392)
T ss_pred hhc
Confidence 443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.9e-10 Score=116.73 Aligned_cols=177 Identities=11% Similarity=-0.055 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHHHHHHHHHHH-HHHHhhhCChHHHHHHHHHH-
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIV--AMSLIGATCITTCS-GAIADWLGRRPMLIVSSVLY- 83 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~--s~~~lG~iig~~~~-G~LsDr~GRR~~lli~~ll~- 83 (560)
.+.++..++.++.......+.+|.+.++.|. +.++.|+.. +...+..++..++. ++.+||+|||+..++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~--~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGA--PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 4456677899999999999999999999999 889999973 55577777777777 45789999998865554332
Q ss_pred HHHHHHHH-h--hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 84 FIGGLVML-W--SPN-VYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 84 ai~~il~~-~--a~s-~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
++.....+ + ..+ ...++..-++.++..+...+....+..|..+++.++..++.......+|..++.... ....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~--~~l~~ 158 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT--LVLFG 158 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 22222222 1 222 333344445555666666677777888888888888888888777788888885333 34445
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
..+||..|++.+++.++..+..++..|+.
T Consensus 159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 159 KFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 67999999999998887666655554544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=112.43 Aligned_cols=151 Identities=18% Similarity=0.226 Sum_probs=120.8
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008603 30 LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFG 109 (560)
Q Consensus 30 p~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g 109 (560)
+++.+++|. ++.+.+++.+...+..+++.++.|+++||+|||+.+.++.++..+..+...+.++.+.+++.+++.|++
T Consensus 224 ~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 301 (375)
T TIGR00899 224 LLIIHELGL--PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF 301 (375)
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678898 778888888777777788889999999999999998888777666666666677888888889999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheecc
Q 008603 110 IGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLP 186 (560)
Q Consensus 110 ~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lp 186 (560)
.+...+....++.|..|.+ +++.+++.+...++|..+++.+.. ...+..+|+..|++.+++.++..++. ++++
T Consensus 302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 374 (375)
T TIGR00899 302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGG--ILAERWSYHAVYWFAIVMLIVALFCL-LLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHH--HHHHhccchhHHHHHHHHHHHHHHHH-heec
Confidence 9988888888999998864 669999999998999999865543 33455689999999888887766553 4444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-10 Score=117.81 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=131.5
Q ss_pred HHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008603 26 AGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARL 104 (560)
Q Consensus 26 ~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~ 104 (560)
....|.+.++ +|. ++...+++.+...++.+++.++.+++.||.++++.+.++.++.+++.++..+.++.+.++++.+
T Consensus 243 ~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADEVWQM--GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHhccCC--ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3345555444 888 6789999999999999999999999999988888888888888888888888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhee
Q 008603 105 LDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 105 l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
+.|++.+...+....++.|.+|++.||+.+++......+|..+++.+. ....+..+++..+.+.+++.++..++....
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~--G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL--GGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH--HHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 999999888778888999999999999999999999999999995554 444556678888888887777766666667
Q ss_pred ccCC
Q 008603 185 LPES 188 (560)
Q Consensus 185 lpEs 188 (560)
+|+.
T Consensus 399 ~~~~ 402 (417)
T PRK10489 399 LGEL 402 (417)
T ss_pred cccc
Confidence 7776
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=115.78 Aligned_cols=139 Identities=18% Similarity=0.159 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008603 44 IEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISE 123 (560)
Q Consensus 44 ~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE 123 (560)
..+.+.++..++.+++.++.|+++||+|||+.+.++.++.+++.+...+.++.+.+++.+++.|++.+...+....++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35666677788889999999999999999999999988888887777777888888899999999999999999999999
Q ss_pred hcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhee
Q 008603 124 TAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 124 ~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
..|++.||+.+++.+....+|..+++.+. ....+..+|+..|++.+++.++..++.++.
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~--G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMG--AAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHH--HHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996554 444566789999999999888877665443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-09 Score=113.81 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=110.5
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHH
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW---S-PNVYVLLLARL 104 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~---a-~s~~~lii~R~ 104 (560)
.+++.+++|. +......+.....+..+++.++.|+++||+|||++++++.++.+++.+.+.. . ++...+++..+
T Consensus 274 ~~y~~~~~g~--s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T PRK09952 274 LNYSTQNLGL--PRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM 351 (438)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3456778888 5565555555666677888999999999999999988887766555433322 1 23445555667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH-HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhe
Q 008603 105 LDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFT-GCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 105 l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~-~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
+.+++.+...+..+.+++|.+|++.|+...++.... ..+|..+++.+...+......+|+..+.+.+++.++..+.. +
T Consensus 352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~ 430 (438)
T PRK09952 352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-L 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-H
Confidence 778888888888899999999999999888886544 34677777655544433223358888888888777766554 3
Q ss_pred eccCC
Q 008603 184 YLPES 188 (560)
Q Consensus 184 ~lpEs 188 (560)
.++|+
T Consensus 431 ~~~~~ 435 (438)
T PRK09952 431 LMKDN 435 (438)
T ss_pred Hcccc
Confidence 45654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-09 Score=112.85 Aligned_cols=154 Identities=12% Similarity=0.029 Sum_probs=119.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHH
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG-LVMLWSPNVYVLLLARLL 105 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~-il~~~a~s~~~lii~R~l 105 (560)
...|++.+.+|. +....+++.+...++.++++++.|+++||+|||..+.. ..+..++. ++..+.++.+.++++.++
T Consensus 227 ~~~~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l 303 (390)
T PRK03545 227 YIEPFVQQVAGL--SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIF 303 (390)
T ss_pred HHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 345566777888 66888999999999999999999999999998875444 44443433 333456778888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheec
Q 008603 106 DGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYL 185 (560)
Q Consensus 106 ~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~l 185 (560)
.|++.+...+....++.+..| +.|++++++.+....+|..+++.+ +....+..+++..|++.+++.++..++.++..
T Consensus 304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~--~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL--GNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999887776777788888876 688999999999899999998554 45556778999999999988888776655554
Q ss_pred c
Q 008603 186 P 186 (560)
Q Consensus 186 p 186 (560)
+
T Consensus 381 ~ 381 (390)
T PRK03545 381 R 381 (390)
T ss_pred c
Confidence 4
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-10 Score=121.39 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCCCChHH---------HHH-HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh
Q 008603 25 IAGAVLYIKREFHLETEPTI---------EGL-IVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP 94 (560)
Q Consensus 25 ~~~~lp~i~~~~gls~s~~~---------~gl-i~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~ 94 (560)
.....|.+.++.|.+.+... ... ......++.+++.++.++++||+|||+.++++.++.+++.+++.+..
T Consensus 307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33346777778887432110 011 23344556777889999999999999999888877777666555432
Q ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc--------ccc
Q 008603 95 N----VYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT--------APS 162 (560)
Q Consensus 95 s----~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~--------~~~ 162 (560)
+ ...+.+.-+...++.....+..+.+.+|.+|++.|+++.++.+....+|.++++.+...+...+ ..+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 1 1111111111222222233566788899999999999999999999999999866554443221 134
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
+...|++.+++.++..++ .+++||+
T Consensus 467 ~~~~~~i~~~~~~~~~i~-~~~lpEt 491 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILF-TLLIPET 491 (502)
T ss_pred chHHHHHHHHHHHHHHHH-heEeccC
Confidence 456777777777776554 5788998
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-09 Score=116.98 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----hh
Q 008603 20 WDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW-----SP 94 (560)
Q Consensus 20 ~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~-----a~ 94 (560)
+...+....++.+..++.- ++...+++..+..+..++.++++|.++||+.||++++.+-++.++..++.++ ..
T Consensus 24 lG~~~~~va~~wlv~~lt~--S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~ 101 (524)
T PF05977_consen 24 LGDWMQTVALAWLVTQLTG--SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL 101 (524)
T ss_pred HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3333333344544445544 8899999999999999999999999999999999999998877665544433 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 008603 95 NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPS 174 (560)
Q Consensus 95 s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ 174 (560)
+.+.+++.-++.|++.+...|+.++++.|+.|+++...++++.+...++...+|+.++. .+....|-.+.|.+.++..
T Consensus 102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG--~Lva~~G~~~~f~inalsf 179 (524)
T PF05977_consen 102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG--ILVAFFGAAAAFLINALSF 179 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999888855543 3333445667777776665
Q ss_pred HHHHH
Q 008603 175 LIYFV 179 (560)
Q Consensus 175 ll~~i 179 (560)
++..+
T Consensus 180 l~~i~ 184 (524)
T PF05977_consen 180 LISIL 184 (524)
T ss_pred HHHHH
Confidence 55433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=118.59 Aligned_cols=153 Identities=8% Similarity=0.021 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHH--HHHHHHHHHHHHHhhhhHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRRPMLIV--SSVLYFIGGLVMLWSPNVYV 98 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~--GRR~~lli--~~ll~ai~~il~~~a~s~~~ 98 (560)
......+|.+.++++. +..+.+++.++..++.++++++.|+++||. ++|+...+ +.++.+++.+++.+.++++.
T Consensus 258 ~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 335 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGV--DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTG 335 (455)
T ss_pred cchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3333445555667888 779999999999999999999999999974 33433333 33333444555566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHH
Q 008603 99 LLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLGVLFIPSLIY 177 (560)
Q Consensus 99 lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~-~Wr~~f~i~ai~~ll~ 177 (560)
+++.+++.|++.+...+..+.++.|.+|++++++.+++.+....+|..+++.+. ....+.. +|+..|++.+++.++.
T Consensus 336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~--G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA--GRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce--eeeehhcCCcchHHHHhhHHHHHH
Confidence 999999999999999899999999999999999999999999999999995444 3344444 5999999988877765
Q ss_pred HH
Q 008603 178 FV 179 (560)
Q Consensus 178 ~i 179 (560)
.+
T Consensus 414 ~~ 415 (455)
T TIGR00892 414 GL 415 (455)
T ss_pred HH
Confidence 44
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-09 Score=110.09 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH--HHH
Q 008603 14 GNLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG--LVM 90 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~--il~ 90 (560)
..++...........+|. ++++++. ++.+.+.+.....++.+++.++.|+++||+|||+.+.+..++..+.. ++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455554 4577888 67889999999999999999999999999999998775554443332 222
Q ss_pred Hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHH-HHHHHHHHHHHHHHHHHHHhccccc-hhHH
Q 008603 91 LW--SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP-QFTGCVGMFLAYCMVFGMSLMTAPS-WRLM 166 (560)
Q Consensus 91 ~~--a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~-~~~~~lG~~lg~li~~~l~~~~~~~-Wr~~ 166 (560)
.+ .++.+.+++..++.|++.+...+..+.+++|.+|++.|++++++. +....+|..+++.+. ....+..+ |+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~--g~l~~~~g~~~~~ 382 (394)
T TIGR00883 305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA--AALVAMTGDWYAI 382 (394)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH--HHHHHHcCcchhH
Confidence 22 246677777888999999888899999999999999999999874 455567777775544 33334445 8777
Q ss_pred HHHHHHHHH
Q 008603 167 LGVLFIPSL 175 (560)
Q Consensus 167 f~i~ai~~l 175 (560)
++...+..+
T Consensus 383 ~~~~~~~~l 391 (394)
T TIGR00883 383 GYYLAALAL 391 (394)
T ss_pred HHHHHHHHH
Confidence 666655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=109.00 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008603 22 NATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLL 101 (560)
Q Consensus 22 ~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii 101 (560)
........|.+.+++|. ++...|++.+...++.+++.++.+++.||+|+|+.+.++.++.++..++++++++.+.+++
T Consensus 221 ~~~~~~~~~~~l~~~g~--s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T TIGR00902 221 HAAYYGFSAIYWQAAGI--SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL 298 (382)
T ss_pred HHHHHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 33344445555567898 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHH-HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQ-FTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~-~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
..++.|+..+...+....|+.+. |++.|++..++++ ....+|..+++.+. ....+..++ ..|++.++++++.+++
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~--G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA--GFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 9999999999876 45678888885554 444455575 5677777777765443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=118.66 Aligned_cols=179 Identities=11% Similarity=0.139 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCC-hHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAG-AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD----WLGR-RPMLIVSSVL 82 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~-~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD----r~GR-R~~lli~~ll 82 (560)
+.-.++.+...+......+ +..++.+.+|+ ++...|.+..+.-+.-.+..|+.|.++| |+|| |+.++++.+.
T Consensus 9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gl--s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~ 86 (473)
T PRK10429 9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGL--SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLA 86 (473)
T ss_pred HhhccchhHHhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHH
Confidence 3444555555555555555 45567777899 8899999999999999999999999999 5698 6788888888
Q ss_pred HHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 83 YFIGGLVMLWSPN------VYVLLLARLLDGFGIGLAVTLVPIYISETA-PPEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 83 ~ai~~il~~~a~s------~~~lii~R~l~G~g~G~~~~~~~~~isE~~-p~~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
.+++.+++...++ +..+++..++.+++.....+...++++|+. ++++|.+.+++-..+.++|..+........
T Consensus 87 ~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 87 NSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887666644331 334555666777788888788889999999 589999999987777777755543322211
Q ss_pred H--h---ccccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 156 S--L---MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 156 ~--~---~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
. . .+..+|+....+.+++.++..++.++..+|.+
T Consensus 167 ~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~ 205 (473)
T PRK10429 167 VNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY 205 (473)
T ss_pred HHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC
Confidence 1 1 11236788877777777776666666677753
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-09 Score=108.31 Aligned_cols=165 Identities=21% Similarity=0.196 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH--HHHH------HHHH
Q 008603 12 AIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRP--MLIV------SSVL 82 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~--~lli------~~ll 82 (560)
.+..++............| ++.+.++. ++.+.+++.+...++.+++.++.|+++||+|||+ .... +.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T TIGR00893 221 ALGQFLVNIGLGFFLTWFPTYLVQERGL--SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV 298 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcc--cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3344444444445555555 45667888 7789999999999999999999999999999996 1111 1111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 83 YFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 83 ~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
..+..+.....++.+..+...++.+++.+ ..+....+++|.+|++.|++.+++.+....+|..+++.+. ....+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~--g~l~~~~g 375 (399)
T TIGR00893 299 LSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI--GAIAATTG 375 (399)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh--hhhccCCC
Confidence 11111111112344444444444444444 6688899999999999999999999999999999985444 44455666
Q ss_pred -hhHHHHHHHHHHHHHHHhh
Q 008603 163 -WRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 163 -Wr~~f~i~ai~~ll~~il~ 181 (560)
|+..|.+.+++.++..++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 376 SFAGALMVVAALALIGALSY 395 (399)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 9999988888877765543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=109.08 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHHHHHh-
Q 008603 15 NLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI-VSSVLYFIGGLVMLW- 92 (560)
Q Consensus 15 ~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll-i~~ll~ai~~il~~~- 92 (560)
.++............|.+.+++|. ++.+.+.+.+...++.+++.++.|+++||+|||+.+. .+.+..+++.++..+
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~ 308 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGF--STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI 308 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445567777788998 6688888888999999999999999999999887664 333333333333322
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 93 ----SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 93 ----a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
.++.+.+++..++.|++.+...+ ....++|..| ++||++.++.+....+|..+++.+. ....+..+|+..|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~--g~l~~~~g~~~~~~ 384 (402)
T TIGR00897 309 PQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIA--VLFIGFFGAIGVVW 384 (402)
T ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcchHHHHH
Confidence 24567777888899998887644 4556677655 6899999999999999999986555 34455678999999
Q ss_pred HHHHHHHHHHHhhh
Q 008603 169 VLFIPSLIYFVLTI 182 (560)
Q Consensus 169 i~ai~~ll~~il~~ 182 (560)
+.+++.++..++..
T Consensus 385 ~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 385 IFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877666543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-09 Score=114.03 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIG 86 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~ 86 (560)
+.+++.++..+.+ ...+......+-++-|+ +..+.-+++....+..++.++++..+.||+|||+.++++..++.+.
T Consensus 273 i~~~v~~~qq~sG--i~ai~~Yst~i~~~aG~--~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 273 IGIVVSFAQQFSG--INAIFFYSTSIFKTAGF--TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHhcC--cceeHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3334444443333 35555566778888899 7788889999999999999999999999999999999999999888
Q ss_pred HHHHHhhh---hHH------HHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 87 GLVMLWSP---NVY------VLLLARLLDG--FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 87 ~il~~~a~---s~~------~lii~R~l~G--~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
.+++...- +.. ..+++.++.. ++.|.. |..+.+.+|.+|++.|..+.++......+..++.....+.+
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776521 111 2233444433 444433 77788999999999999999999888888877764333332
Q ss_pred HhccccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHH
Q 008603 156 SLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLE 200 (560)
Q Consensus 156 ~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~e 200 (560)
.+..|- ..|.+..+++++.+++.++++||| |||..+
T Consensus 428 --~~~~g~-~~filF~i~~~~~~i~~~~~lPET------kgr~~~ 463 (485)
T KOG0569|consen 428 --QNVIGP-YVFILFVIPLAIFLIYLYRYLPET------KGRTPY 463 (485)
T ss_pred --HHHhcc-hhhHHHHHHHHHHHHHHHHhCccc------CCCCHH
Confidence 223333 788888899999899999999999 666543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=111.80 Aligned_cols=164 Identities=18% Similarity=0.105 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM 90 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~ 90 (560)
.++.++...........+| ++++.+|+ ++.+.+.+.+.+.++.++++++.|+++||++||+.+.....+.++..++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 211 AIAALLYILAQLTFISWVPEYAQKKFGM--SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 3333443343444445555 45577899 77899999999999999999999999999999999988887777777777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 008603 91 LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVL 170 (560)
Q Consensus 91 ~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ 170 (560)
...++...+.+..++.|++.+...+....+..|..|. .+++..+.......+|..+++.+. ....+..+|+..|++.
T Consensus 289 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~--G~l~~~~g~~~~~~~~ 365 (394)
T PRK03699 289 VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVT--SPIVAHFGLQAALLTA 365 (394)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHH--HHHHHHhCchhhhhhh
Confidence 6777777777778889998888878878888887764 467777888888889998885554 3444567899999888
Q ss_pred HHHHHHHHHh
Q 008603 171 FIPSLIYFVL 180 (560)
Q Consensus 171 ai~~ll~~il 180 (560)
+++.++.+++
T Consensus 366 ~~~~~~~~~~ 375 (394)
T PRK03699 366 NGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHH
Confidence 8887776554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=108.52 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLA 102 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~ 102 (560)
......+|.+.++.+. ++...+.+.+...++.++++++.|+++||+|||+++..+..+.+++.+... + ...+...
T Consensus 217 ~~~~~~lp~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~ 291 (381)
T PRK03633 217 GSLYGLMPLYLNHQGM--SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPA 291 (381)
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHH
Confidence 3334456766677788 778899999999999999999999999999999999888877777655443 2 2334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
.++.|++.....+.+..++.|..|+++++...+..+...++|..+++.+. ....+..+|++.|.+.+.+.++..++
T Consensus 292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~--G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFT--AMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 77788877777788899999999998888888888888899999995544 44556678999999988888776554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.8e-09 Score=110.46 Aligned_cols=164 Identities=20% Similarity=0.228 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh-hHHH
Q 008603 20 WDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP-NVYV 98 (560)
Q Consensus 20 ~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~-s~~~ 98 (560)
.........+|.+.+++|. +....+...+.+.++.++++++.|++.||+|||+.+.++..+.+++.+++.+.+ +...
T Consensus 219 ~~~~~~~~~lp~~l~~~g~--s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (393)
T PRK09705 219 GGYASLIAWLPAFYIEIGA--SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV 296 (393)
T ss_pred HHHHHHHHHHHHHHHHcCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 3334444456655566888 778999999999999999999999999999999999988888777776655433 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHH
Q 008603 99 LLLARLLDGFGIGLAVTLVPIYISETAP-PEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLGVLFIPSLI 176 (560)
Q Consensus 99 lii~R~l~G~g~G~~~~~~~~~isE~~p-~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~-~Wr~~f~i~ai~~ll 176 (560)
+ .-++.|++.+...+.+.....+.++ ++.|++.+++.+....++..+++.....+ .+.. +|...|.+.++..++
T Consensus 297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l--~~~~g~~~~~~~~~~~~~~~ 372 (393)
T PRK09705 297 L--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL--RSISGNYLMDWAFHALCVVG 372 (393)
T ss_pred H--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCchHHHHHHHHHHHH
Confidence 2 2346788888877777777777775 67899999999999999888886555333 3333 588888888888887
Q ss_pred HHHhhheeccCCh
Q 008603 177 YFVLTIFYLPESP 189 (560)
Q Consensus 177 ~~il~~~~lpEsP 189 (560)
..+..+.+.||++
T Consensus 373 ~~~~~~~~~~~~~ 385 (393)
T PRK09705 373 LMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHhccccc
Confidence 7777777888874
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-09 Score=109.57 Aligned_cols=137 Identities=25% Similarity=0.243 Sum_probs=107.7
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL-VMLWSPNVYVLLLARLLDG 107 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i-l~~~a~s~~~lii~R~l~G 107 (560)
.+++.+++|. +..+.+++.+...++.+++.++.|++.||+|||+.+.++.++..+..+ +....++.+.+.+..++.+
T Consensus 262 ~~~~~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 262 PTYLKADLGL--SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339 (405)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4466778898 779999999999999999999999999999999998888776543333 3334456667777778888
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc-hhHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLMLGV 169 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~-Wr~~f~i 169 (560)
+..+...+..+.+++|.+|++.|++++++.+....+|..+++.+.. ...+..+ |+..+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g--~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA--LLAQRLDEYGTALAS 400 (405)
T ss_pred HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH--HHHHhccccchhHHh
Confidence 7777777888899999999999999999999999999999866553 3344445 6665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-08 Score=108.71 Aligned_cols=157 Identities=20% Similarity=0.130 Sum_probs=103.8
Q ss_pred HHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHH-HHHHHHHHHHHHHHHh--hhhH
Q 008603 23 ATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRRPML-IVSSVLYFIGGLVMLW--SPNV 96 (560)
Q Consensus 23 ~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~--GRR~~l-li~~ll~ai~~il~~~--a~s~ 96 (560)
......+|. +++++|+ +..+.+++...+.++.+++.++.|+++||+ +||... +....+..++.++..+ ..+.
T Consensus 270 ~~~~~~~P~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (452)
T PRK11273 270 YGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP 347 (452)
T ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence 334445564 5556788 668888888888899999999999999999 555433 2222333333332222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHH-HHHHHHHHHhccccchhHHHHHHHHHHH
Q 008603 97 YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFL-AYCMVFGMSLMTAPSWRLMLGVLFIPSL 175 (560)
Q Consensus 97 ~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~l-g~li~~~l~~~~~~~Wr~~f~i~ai~~l 175 (560)
..++++.++.|++..........++.|.+|++.||+++++.+....+|..+ ++.+. ....+..+|+..|++.++.++
T Consensus 348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~--g~l~~~~g~~~~f~~~~~~~~ 425 (452)
T PRK11273 348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVDFFGWDGGFMVMIGGSI 425 (452)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH--HHHHHHhcchHHHHHHHHHHH
Confidence 445555566666543333344557789999999999999998887777544 54333 334456689999998888877
Q ss_pred HHHHhhhe
Q 008603 176 IYFVLTIF 183 (560)
Q Consensus 176 l~~il~~~ 183 (560)
+.+++...
T Consensus 426 ~~~~~~~~ 433 (452)
T PRK11273 426 LAVILLIV 433 (452)
T ss_pred HHHHHHHH
Confidence 76655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-08 Score=104.06 Aligned_cols=156 Identities=21% Similarity=0.332 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008603 20 WDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVL 99 (560)
Q Consensus 20 ~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~l 99 (560)
-..+...|+++.+++++|+ +.+..|++++...+...+.+++..++..|+|.++.+.+++++.+++.++=... +...+
T Consensus 26 ~~itsvgPLL~~Ir~~~gl--s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L 102 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGL--SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLL 102 (395)
T ss_pred hhhhhhhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHH
Confidence 4457778899999999999 77999999999999999999999999999999999999999999999988876 78889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
+.+-++.|.+.+...+..|.++-+.||.+ -+..++++.....+|..++......+.... .+||..+.+-++++++.++
T Consensus 103 ~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 103 FLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALL 180 (395)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865 588999999998888888855554443322 5899999999999998766
Q ss_pred h
Q 008603 180 L 180 (560)
Q Consensus 180 l 180 (560)
+
T Consensus 181 ~ 181 (395)
T COG2807 181 I 181 (395)
T ss_pred H
Confidence 5
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=121.39 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
|.+++..++.++...-.......+.+.++++|+. +..+.+|+.++......+..++.+.++||+|.|++.+++.++.+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~--s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGS--SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCC--CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 4444555555554433344455678899999998 66789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008603 85 IGGLVMLWSPNVYVLLLAR-LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 85 i~~il~~~a~s~~~lii~R-~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W 163 (560)
++.++.+|+++++.+++.. ++.|+|.|..+....+.+..+| .++|+.++++......+|.++-+.+. -.+.+..||
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~--~~l~~~~G~ 199 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLL--KYLLSKYGW 199 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHH--HHHHHHhCc
Confidence 9999999999998777764 8899999999888888877554 57899999998888888777653322 344567799
Q ss_pred hHHHHHHHHHHHHHHHhhheecc
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLP 186 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lp 186 (560)
|..+++.+.+.+-.++....+-|
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999888777776666666
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=118.35 Aligned_cols=159 Identities=22% Similarity=0.377 Sum_probs=126.4
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCh-HHHHHHHHHHHHHHHHHHhh-h------
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD----WLGRR-PMLIVSSVLYFIGGLVMLWS-P------ 94 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD----r~GRR-~~lli~~ll~ai~~il~~~a-~------ 94 (560)
...+++.+.+++ ++...|++..+.-+-.++..|+.|.++| |+||| +.++++.++.+++.+++... +
T Consensus 23 ~~~~f~~~~~gl--~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 23 YLLYFYTDVLGL--SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 456778888899 8899999999999999999999999999 89965 67778888888888877765 4
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhHHHHHHHHHHHHHHHHHHHHH-hcc---c-cchhHHH
Q 008603 95 -NVYVLLLARLLDGFGIGLAVTLVPIYISETAP-PEIRGLLNTLPQFTGCVGMFLAYCMVFGMS-LMT---A-PSWRLML 167 (560)
Q Consensus 95 -s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p-~~~RG~~~~l~~~~~~lG~~lg~li~~~l~-~~~---~-~~Wr~~f 167 (560)
....+.+..++..++.........++++|+.+ +++|.+..+..+.+..+|.++.......+. ... . .+|+++.
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 22345666667788888888888899999998 578999999999988888865433333322 111 1 2799999
Q ss_pred HHHHHHHHHHHHhhheeccC
Q 008603 168 GVLFIPSLIYFVLTIFYLPE 187 (560)
Q Consensus 168 ~i~ai~~ll~~il~~~~lpE 187 (560)
.+.+++.++..++..+..+|
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHhhhhhheeee
Confidence 99999999988888888899
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=112.05 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=107.9
Q ss_pred HHHHHH-HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 008603 27 GAVLYI-KREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS--PNVYVLLLAR 103 (560)
Q Consensus 27 ~~lp~i-~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a--~s~~~lii~R 103 (560)
..+|.+ ++++|. +..+.+++.+...++.+++.++.|+++||+|||+.++++.++..+..++.... .+.+.+.+..
T Consensus 296 ~~lp~~l~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 296 ALLPTYLKTDLGY--DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 445544 468898 77999999999999999999999999999999999888877766655544332 3344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPS 174 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ 174 (560)
++.++......+..+.+++|.+|++.|++.+++.+....+|..+++.+. ....+..+|+..+.+.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~--g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILG--ALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHH--HHHhccCChHHHHHHHHHHH
Confidence 5544443344567788999999999999999999999999999986544 45556678888776555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-08 Score=106.71 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh--hHHHHHHH
Q 008603 25 IAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLLLA 102 (560)
Q Consensus 25 ~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~--s~~~lii~ 102 (560)
+...+|.+.++.|. ++...+.+.+...++.++++++.|+++||+|||+.+..+.++.++..+.....+ +...+.+.
T Consensus 250 ~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (426)
T PRK12307 250 IFGLLPTYLAGEGF--DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC 327 (426)
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 34456666667788 778889999999999999999999999999999999888877766655444332 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
.+..+++.....+..+.++.|.+|++.||+++++......+|..+++.+.. ...+..++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g--~l~~~~g~~~ 388 (426)
T PRK12307 328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT--WLGITMGLGA 388 (426)
T ss_pred HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH--HHHHcccHHH
Confidence 222222222334566788899999999999999999888999888865543 3334445443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=104.61 Aligned_cols=135 Identities=16% Similarity=0.044 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhh
Q 008603 16 LLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPN 95 (560)
Q Consensus 16 fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s 95 (560)
++...........+|++.++++. ++.+.+++.+...++.+++.++.|+++||+|||+.+....+..+...++....++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (398)
T TIGR00895 260 FMLLVGVYFLTNWLPKLMVELGF--SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS 337 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33334444455567788889998 7788999999999999999999999999999995555444443333333333567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 96 VYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 96 ~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
...+++..++.|++.+...+....+++|.+|++.|++..++......+|..+++.+.
T Consensus 338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 777788889999999999999999999999999999999999999999998886544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-08 Score=105.76 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=89.6
Q ss_pred HHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH-HH---hhhhH
Q 008603 22 NATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV-ML---WSPNV 96 (560)
Q Consensus 22 ~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il-~~---~a~s~ 96 (560)
........|. +++.+|. +..+.++......++.+++.++.|+++||+|||+.++++.++.++..+. .. ..+++
T Consensus 254 ~~~~~~~~p~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHL--SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF 331 (434)
T ss_pred HHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 3444455565 4555898 6688888888888999999999999999999999887765544332221 11 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHH-HHHHHHHHHH
Q 008603 97 YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGC-VGMFLAYCMV 152 (560)
Q Consensus 97 ~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~-lG~~lg~li~ 152 (560)
..+.+..++.+++.+...+....+++|.+|++.|+...++...... ++..+++.+.
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~ 388 (434)
T PRK15075 332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS 388 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence 4444556667777777777777899999999999999998644443 3345554433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=122.80 Aligned_cols=148 Identities=20% Similarity=0.167 Sum_probs=120.4
Q ss_pred HHHHHHHHcCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008603 28 AVLYIKREFHLETEPT-IEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLD 106 (560)
Q Consensus 28 ~lp~i~~~~gls~s~~-~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~ 106 (560)
..+++.+.+|+ +.. ..+++.+...++.+++.++.|+++||+++|+++.++.++.+++.+++.+..+.+.++++.++.
T Consensus 255 ~~~~~~~~~g~--s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1146)
T PRK08633 255 FPAYAKEVLGL--DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF 332 (1146)
T ss_pred hHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34466778898 667 889999999999999999999999999999999888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008603 107 GFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYF 178 (560)
Q Consensus 107 G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~ 178 (560)
|++.+...+...+++.+.+|++.||+++++.++...+|.+++..+...+.. ...++...|++.+++.++..
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Confidence 999999988899999999999999999999999998888776554433322 22345556666555544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=107.86 Aligned_cols=171 Identities=16% Similarity=0.107 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--C-ChHHHHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--G-RRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~--G-RR~~lli~~ll~ai~~i 88 (560)
++.++...........+| ++.+++|+ +..+.+...+.+.++.++++++.|+++||+ + ||+......+...+...
T Consensus 250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~ 327 (434)
T PRK11663 250 FSYVLVYVVRAAINDWGNLYMSETLGV--DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence 333333333344444555 44577898 778899999999999999999999999999 3 33332222111111111
Q ss_pred HHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Q 008603 89 VML--WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLM 166 (560)
Q Consensus 89 l~~--~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~ 166 (560)
+.. ...+...+.+..+..|++..........+++|.+|++.|++.+++.+....+|..+++.+.. ...+..+|+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g--~l~~~~g~~~~ 405 (434)
T PRK11663 328 SLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA--KVLEIWHWTGF 405 (434)
T ss_pred HHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH--HHHHhcccHHH
Confidence 111 12233333344445555433333334567789999999999999999999999999865553 44456789999
Q ss_pred HHHHHHHHHHHHHhhheeccC
Q 008603 167 LGVLFIPSLIYFVLTIFYLPE 187 (560)
Q Consensus 167 f~i~ai~~ll~~il~~~~lpE 187 (560)
|.+.+++.++..+..+++.++
T Consensus 406 f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 406 FVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999888876665554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-08 Score=101.86 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=109.3
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHH
Q 008603 27 GAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPN-VYVLLLARL 104 (560)
Q Consensus 27 ~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s-~~~lii~R~ 104 (560)
...|++.++ ++. ++.+.+++.....++.+++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..+
T Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSKYLGR--GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 456766554 788 7789999999999999999999999999999999999888888888777777774 888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 105 LDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 105 l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
+.|++.+...+....++.|.+|++.|++..++.+....+|..+++.+.
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998886554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-08 Score=103.53 Aligned_cols=153 Identities=15% Similarity=0.141 Sum_probs=94.0
Q ss_pred HHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH--h--hhhHHHHH
Q 008603 26 AGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML--W--SPNVYVLL 100 (560)
Q Consensus 26 ~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~--~--a~s~~~li 100 (560)
...+| ++.+.+|. +..+.+...++..++.+++.++.|+++||+|||+.++++.++.++..+... . .++....+
T Consensus 263 ~~~lp~~l~~~~g~--s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (432)
T PRK10406 263 TTYMQKYLVNTAGM--HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF 340 (432)
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 33445 45667888 668888888888888889999999999999999988776665443332221 1 22333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH-HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVG-MFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG-~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
..-++.++..+...+..+.+++|++|++.|+++.++.+...++. ....+.+.. .......|...+++.++..++.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~--~l~~~g~~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL--SLKSIGMETAFFWYVTLMAVVAFL 418 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHHH
Confidence 22233334444444566788999999999999999987665542 223433222 222222355556655555555544
Q ss_pred hhh
Q 008603 180 LTI 182 (560)
Q Consensus 180 l~~ 182 (560)
..+
T Consensus 419 ~~~ 421 (432)
T PRK10406 419 VSL 421 (432)
T ss_pred HHH
Confidence 433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.6e-08 Score=105.51 Aligned_cols=161 Identities=20% Similarity=0.171 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHHh--------
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRR--PMLIVSSVLYFIGGLVMLW-------- 92 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR--~~lli~~ll~ai~~il~~~-------- 92 (560)
+++.....+.++++|+ +..+...+..+..+.+++|++++|++.||+|.| ++++++.++..+..+.-.+
T Consensus 299 ti~~~~~i~a~~~lg~--s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g 376 (477)
T PF11700_consen 299 TIISFAGIYATEVLGM--STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFG 376 (477)
T ss_pred HHHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3334455677789999 779999999999999999999999999999999 8888888777554444333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 008603 93 SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFI 172 (560)
Q Consensus 93 a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai 172 (560)
..+.+.+.+.-++.|+..|...+..-++.+|+.|+.+.+..++++.+..-...++++++........ .+-|..+....+
T Consensus 377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-g~~r~g~~~l~~ 455 (477)
T PF11700_consen 377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-GSQRYGFLFLLV 455 (477)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence 5677888889999999999999999999999999999999999999999999999977664443322 257888887777
Q ss_pred HHHHHHHhhheeccC
Q 008603 173 PSLIYFVLTIFYLPE 187 (560)
Q Consensus 173 ~~ll~~il~~~~lpE 187 (560)
+.++.+++. +.++.
T Consensus 456 lf~~gl~ll-~~v~~ 469 (477)
T PF11700_consen 456 LFLIGLILL-FFVDV 469 (477)
T ss_pred HHHHHHHHH-hhccc
Confidence 777766553 44443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-08 Score=105.57 Aligned_cols=135 Identities=12% Similarity=0.150 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--
Q 008603 17 LQGWDNATIAGAVLYIKR-EFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-- 93 (560)
Q Consensus 17 l~g~~~~~~~~~lp~i~~-~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a-- 93 (560)
+............|++.+ .+|. ++...+++.....++.+++.++.+++.||+|||+++.++.++.++..+++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (471)
T PRK10504 272 AGRIGSGMLPFMTPVFLQIGLGF--SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL 349 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc
Confidence 333334445556776555 5788 78999999999999999999999999999999999999988888777666553
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 94 -PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 94 -~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
++.+.+.+..++.|++.+...+..+.++.+.+|++.|+..+++.++...+|..+++.+..
T Consensus 350 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 350 LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 334445556778888888888888999999999999999999999999999888865543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-08 Score=103.01 Aligned_cols=140 Identities=12% Similarity=0.223 Sum_probs=116.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~ 120 (560)
+....|.+.++..+..+++.++.|++.||+|||+.+.++.++.++..++..++++.+.+++.+++.|++.......+..+
T Consensus 252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 331 (396)
T TIGR00882 252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY 331 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888899999999999999999999999999888888887888899988999999999988777777778
Q ss_pred HHhhcCCcchhhHhhH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhh
Q 008603 121 ISETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 121 isE~~p~~~RG~~~~l-~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
+.+..|++.+++..+. .+....+|..+++.+. ....+..||+.+|.+.+++.++..++..
T Consensus 332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~--G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA--GNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH--HHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 8888999999887766 5677888888885444 4445566899999999888887766543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-08 Score=106.48 Aligned_cols=174 Identities=15% Similarity=0.053 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----ChHHHHHHHHH
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG-----RRPMLIVSSVL 82 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G-----RR~~lli~~ll 82 (560)
..++...++.+|..........|.+++++|+ ++++.+...+...+...+ .++.|+++||++ ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~--s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGL--DGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHH
Confidence 3455556788888744445566788889999 889999999999998877 455999999998 77777877766
Q ss_pred HH-HHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHH---HHHHHHHHHHHHHHHHHHHh
Q 008603 83 YF-IGGLVMLWSPNV-YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP---QFTGCVGMFLAYCMVFGMSL 157 (560)
Q Consensus 83 ~a-i~~il~~~a~s~-~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~---~~~~~lG~~lg~li~~~l~~ 157 (560)
.. +....++..++. ....+..++.+++.+...+++-.+..|..+ +.+....+.. ....++|..++..+. ...
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~--G~l 181 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLG--GPL 181 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHH--HHH
Confidence 63 443334444453 344458899999999999999999999999 5555443333 223347777774444 344
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 158 MTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 158 ~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
.+..+|+..|++.+++.++. ++..+++||.
T Consensus 182 ~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~ 211 (468)
T TIGR00788 182 LDKTLTRILFLITAALLLLQ-LFVSNLSKER 211 (468)
T ss_pred HHhcCcchHHHHHHHHHHHH-HHHHHhcccc
Confidence 45668999999998888876 3445667885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=114.24 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGR-RPMLIVSSVL 82 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GR-R~~lli~~ll 82 (560)
.|..+.++.+..|+.+...+++.+..-.+.++++.+.+.+..|++.++..+|..++++++|+.+.|.+. |+-++.++++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 455666677777888887777666443344555554478999999999999999999999999999985 7777888999
Q ss_pred HHHHHHHH-Hh---hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 008603 83 YFIGGLVM-LW---SP-NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL 157 (560)
Q Consensus 83 ~ai~~il~-~~---a~-s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~ 157 (560)
.+++.++. ++ .+ ..+.++++|++.|+|.|.. +..-.|+++-...+.|.++++.......+|..+|+.+......
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 99999888 33 23 5789999999999998877 7788999999999999999999988888888888777665543
Q ss_pred ccccc-----------hhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 158 MTAPS-----------WRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 158 ~~~~~-----------Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
....| +-..-|+.++..++.+++..++++|.++-
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 32222 23455788888888888888889998654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-08 Score=107.23 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=130.2
Q ss_pred HHHHHHHH-HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008603 25 IAGAVLYI-KREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLAR 103 (560)
Q Consensus 25 ~~~~lp~i-~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R 103 (560)
+..++|.+ ++.+|. ++...|++.+++.+|++++.++.+.+.+++++++.+..+.++++++.+.++++++.+..++.-
T Consensus 237 ~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 237 VWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred HHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33456754 567888 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
++.|++.....+...+.+.+..|++.||+.++++++....++.+|.++ ...+.+..+.+..+.+.++..++..++
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll--~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLL--WGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888888543 345556678888887777655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-08 Score=108.08 Aligned_cols=134 Identities=24% Similarity=0.264 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008603 50 AMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNV--YVLLLARLLDGFGIGLAVTLVPIYISETAPP 127 (560)
Q Consensus 50 s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~--~~lii~R~l~G~g~G~~~~~~~~~isE~~p~ 127 (560)
....+..+++.++.++++||+|||+.+.++.++.+++.+++.+.++. +..++.-++.+++.+...+..+.+.+|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34456677888999999999999999999999988888877776543 4555566777777777788889999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 128 EIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 128 ~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
+.|++++++.+....+|.++++.+.. . ...++...+++.++..++..++ .+++||+
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~lpet 497 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-L---GEKWLFLPLVLFGGLALLAGIL-TLFLPET 497 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-H---HHHHHhhHHHHHHHHHHHHHHH-HHcCcCC
Confidence 99999999999999999999876654 2 2335666777777777776554 4567887
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-08 Score=104.48 Aligned_cols=174 Identities=18% Similarity=0.147 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CCh-HHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRR-PMLIVSSVL 82 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~--GRR-~~lli~~ll 82 (560)
.++.+++++++....+..+.--.| |+.+..|. +....++..+.+=++.+.|+++.|+++||+ ||| ++-++.+++
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~--s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGF--SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 345678888888888888877666 56777788 779999999999999999999999999996 777 555555555
Q ss_pred HHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH-HHHHHHHHHHHHHhcc
Q 008603 83 YFIGGLVMLWSP--NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYCMVFGMSLMT 159 (560)
Q Consensus 83 ~ai~~il~~~a~--s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l-G~~lg~li~~~l~~~~ 159 (560)
..++.+.+-+++ |+++..++-+++|+..-+..-.+-....|..|++--|++.|+.+.+..+ |..++..+. ....+
T Consensus 331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~--g~i~d 408 (448)
T COG2271 331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL--GYIAD 408 (448)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc--eeeEe
Confidence 555555555555 4588888889999988777777777889999999999999999999888 776663333 33445
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhee
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
..+|...|.+..+.+++..++...+
T Consensus 409 ~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 409 TWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5799999988888877766554433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-08 Score=102.82 Aligned_cols=115 Identities=19% Similarity=0.325 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-PNVYVLLLARLLDGFGIGLAVTLVPI 119 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a-~s~~~lii~R~l~G~g~G~~~~~~~~ 119 (560)
++...+++.....++.+++.++.++++||+|||+.+.++.++.+++.+++.+. ++.+.+++..++.|++.+...+..++
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888889999999999999999999999999988888887777665 45667777888999999999888999
Q ss_pred HHHhhcC-------CcchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 120 YISETAP-------PEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 120 ~isE~~p-------~~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
+++|..+ ++.+|...++.+....+|..+++.+...+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 56679999999999999988886655443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=106.53 Aligned_cols=161 Identities=14% Similarity=0.186 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCC-hHHHHHHHHHHHHHHHHHHhhhh-----
Q 008603 26 AGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW----LGR-RPMLIVSSVLYFIGGLVMLWSPN----- 95 (560)
Q Consensus 26 ~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr----~GR-R~~lli~~ll~ai~~il~~~a~s----- 95 (560)
..+.+++.+++|+ ++...|.+..+..+...+..|+.|.++|| +|| |+.++++.+..+++.+++.+.++
T Consensus 30 ~~l~~~~t~~~gl--s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 30 LFLAYFYTDVFGL--SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 3356678889999 88999999999999999999999999998 786 57777787777777766555543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHHHHHH--hc---cccchhHHHH
Q 008603 96 -VYVLLLARLLDGFGIGLAVTLVPIYISETA-PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS--LM---TAPSWRLMLG 168 (560)
Q Consensus 96 -~~~lii~R~l~G~g~G~~~~~~~~~isE~~-p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~--~~---~~~~Wr~~f~ 168 (560)
+..+++..++.+.+......+..++.+|+. ++++|.+.+++......+|..++..+...+. .. ...+|+..+.
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~ 187 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM 187 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 455556666667766667677778999998 5588999999988888888777754432221 11 1347998888
Q ss_pred HHHHHHHHHHHhhheeccCC
Q 008603 169 VLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 169 i~ai~~ll~~il~~~~lpEs 188 (560)
+.+++.++..++.++..+|.
T Consensus 188 i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 188 VMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHhCCeEEe
Confidence 88888877766666666664
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-07 Score=99.51 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG-RRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G-RR~~lli~~ll~ai~~il 89 (560)
++.-+|+++...++..|.++.+-++.|+ ++.++|++.++..+..+++.++.|.++||.+ +|+.+.++.++.++..+.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~--s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGF--SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 4555667777778888888888899999 8899999999999999999999999999986 567887877777777777
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHH--HhccccchhHHH
Q 008603 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM--SLMTAPSWRLML 167 (560)
Q Consensus 90 ~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l--~~~~~~~Wr~~f 167 (560)
..+.++++.+++.-++..+......+...++..+... .++.-.+-.-.++++|-.++.+..... ...+.......+
T Consensus 85 ~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
T PF03825_consen 85 LAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIF 162 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 7778888888888888887777666777777776665 345566677788888887764431111 111122233455
Q ss_pred HHHHHHHHHHHHhhheeccCCh
Q 008603 168 GVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 168 ~i~ai~~ll~~il~~~~lpEsP 189 (560)
++.++.+++.... .+.+|+.|
T Consensus 163 ~i~~~~~~ll~~~-~l~lp~~~ 183 (400)
T PF03825_consen 163 YIAAILSLLLAGF-ALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHHH-HHhCCCCc
Confidence 6666555544332 34567776
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=107.27 Aligned_cols=146 Identities=14% Similarity=0.048 Sum_probs=103.6
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008603 30 LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRR-------PMLIVSSVLYFIGGLVMLWSPNVYVLLLA 102 (560)
Q Consensus 30 p~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR-------~~lli~~ll~ai~~il~~~a~s~~~lii~ 102 (560)
+++.+++|+ +....+.+.+...++.++++++.|+++||+||| ..+.+..++.++..++..+.++.+..++.
T Consensus 277 ~~l~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 354 (476)
T PLN00028 277 EYFYDRFGL--SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV 354 (476)
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 456777899 778999999999999999999999999999865 23333333333334444455566655556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhh
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~ 181 (560)
-++.+++.+........++.++. ++.||...++.+....+|..+++.+. ......+|+..|++.+++.++..++.
T Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~---~~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 355 MILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLF---FTGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHH---HhcCCccHhhHHHHHHHHHHHHHHHH
Confidence 66677776666566666777765 47899999998888888887775432 12234579999999888887765543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-07 Score=98.92 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=113.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008603 28 AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDG 107 (560)
Q Consensus 28 ~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G 107 (560)
..|.+.++.|. +....|.+.+...++.++..++.|++.||+|+|+.+.++.++.+++.+++.++++.+.+++..++.|
T Consensus 227 ~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 227 FSAIYWQAAGY--SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444467888 7788899999888999999999999999999999999999998888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHH-HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQ-FTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYF 178 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~-~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~ 178 (560)
++.+...+....++.+. +++++++..++.+ ....+|..+++.+. ....+..++ ..|++.++++++..
T Consensus 305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~--G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLS--GFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccH-HHHHHHHHHHHHHH
Confidence 99999888888888887 5566788888775 44566667775444 444455566 45666666665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-07 Score=102.01 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=114.0
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHH
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVA-MSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM---LWS-PNVYVLLL 101 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s-~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~---~~a-~s~~~lii 101 (560)
...|++.+++|+ ++.+.+++.. ...++.+++.++.|+++||+|||+.+.++.++.+++.+++ +.. ++.+.+.+
T Consensus 244 ~~~~~l~~~~G~--s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~ 321 (491)
T PRK11010 244 LTTTFLIRGVGF--DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA 321 (491)
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 345666778899 7899999874 5568999999999999999999988877666555544332 232 35555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhh
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~ 181 (560)
.-++..++.|...+...+++.+..+++.+++..++.+...++|..+++.+ .....+..+|+..|.+.++++++..++.
T Consensus 322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~--~G~l~~~~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV--AGWFVEAHGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 66676666676667778889999999999999999998888887766443 3344456689999998888888876554
Q ss_pred he
Q 008603 182 IF 183 (560)
Q Consensus 182 ~~ 183 (560)
.+
T Consensus 400 ~~ 401 (491)
T PRK11010 400 LV 401 (491)
T ss_pred HH
Confidence 43
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=8e-08 Score=104.08 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=104.2
Q ss_pred HHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH---HHHHHHHHh--hhhHHH
Q 008603 25 IAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY---FIGGLVMLW--SPNVYV 98 (560)
Q Consensus 25 ~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~---ai~~il~~~--a~s~~~ 98 (560)
....+| ++++..|. ++...+++.....++.++++++.|+++||+++++....+..+. .++.+++.. ..+.+.
T Consensus 270 ~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T TIGR00712 270 VLDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV 347 (438)
T ss_pred HHHhHHHHHHHccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 334455 45555788 7788899999999999999999999999996543222222221 122222222 123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH-HHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 008603 99 LLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVG-MFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIY 177 (560)
Q Consensus 99 lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG-~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~ 177 (560)
..+..++.|++...........+.|.+|++.|++++++.+....+| ..+++.+. ....+..+|...|++..+..++.
T Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~--G~l~~~~g~~~~~~~~~~~~~~~ 425 (438)
T TIGR00712 348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVDFFGWDGGFMVMIGGSILA 425 (438)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH--HHHHHhccchHHHHHHHHHHHHH
Confidence 4444455555433322333356789999999999999998887766 45664433 34445568999998888888887
Q ss_pred HHhhheeccCC
Q 008603 178 FVLTIFYLPES 188 (560)
Q Consensus 178 ~il~~~~lpEs 188 (560)
.++.++++||.
T Consensus 426 ~~~~~~~~~~~ 436 (438)
T TIGR00712 426 VILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHhhc
Confidence 77777777775
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=98.99 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--------
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSL-IGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-------- 93 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~-lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a-------- 93 (560)
.......|.+.+++|. ++.+.+.+..+.. ++.+++.+++|+++||+|||+.+.++.++.+++..+..+.
T Consensus 226 ~~~~~~~~~~l~~~g~--~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
T TIGR00901 226 SAATVLTTLFLLDMGF--SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDG 303 (356)
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 3344445555555888 7788888877655 6788999999999999999999988888887776655543
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHH
Q 008603 94 ---PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGC 142 (560)
Q Consensus 94 ---~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~ 142 (560)
++.+.++++.++.+++.+...+...+++.|.+|+++||+..++.+...+
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4557778888999999999999999999999999999999998776543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-07 Score=96.66 Aligned_cols=149 Identities=11% Similarity=-0.040 Sum_probs=107.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh------hhhHHHHH
Q 008603 28 AVLYIKREFHLETEPTIEGLIVAMSL-IGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW------SPNVYVLL 100 (560)
Q Consensus 28 ~lp~i~~~~gls~s~~~~gli~s~~~-lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~------a~s~~~li 100 (560)
..+.+.+|.|. ++++.|++..... +..+++.++.|++.||+|+|+.+.++.++.++..+.... .++...+.
T Consensus 230 ~~~~~l~~~G~--s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 230 LSKLYLVDAGW--PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred HhhHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 34444456899 7899999888775 466778999999999999999988877665333322221 12333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAPP-EIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p~-~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
...++.+++.+...+....++.+..++ +.+++..++.+...++|..+++.+. ....+..+++..|.+.+++.++..+
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~--G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA--GYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccHHHHHHHHHHHHHHHH
Confidence 555566777777777778887777776 8899999999999999999996554 4444566888899888877776544
Q ss_pred h
Q 008603 180 L 180 (560)
Q Consensus 180 l 180 (560)
+
T Consensus 386 ~ 386 (390)
T TIGR02718 386 L 386 (390)
T ss_pred H
Confidence 3
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-07 Score=96.44 Aligned_cols=149 Identities=12% Similarity=0.020 Sum_probs=108.9
Q ss_pred HHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-----hhHHHHHH
Q 008603 28 AVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-----PNVYVLLL 101 (560)
Q Consensus 28 ~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a-----~s~~~lii 101 (560)
..| ++.++++. ++.+.++......++.+++.++.|+++||++||+.+.++.++.+++.++..+. .+.+.+++
T Consensus 237 ~~p~~~~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 314 (406)
T PRK15402 237 LSPVILISGEQL--SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA 314 (406)
T ss_pred HhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 344 45677888 77888888888888899999999999999999999998888877777766553 35666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhh
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~ 181 (560)
.-++.|++.+...+....... ..++++||+..+..+....+|..+++.+. ....+..++....+...+..++..++.
T Consensus 315 ~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK15402 315 GLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELS--KHAYLGGGNGLFNLFNLANGLLWLLLV 391 (406)
T ss_pred HHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHH--HhcccCCchHHHHHHHHHHHHHHHHHH
Confidence 888999999887666555543 34558999999999999989988884443 334455555555445444444443433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=98.03 Aligned_cols=179 Identities=21% Similarity=0.214 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008603 5 ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF 84 (560)
Q Consensus 5 ~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a 84 (560)
.+..+.++-..+..+. ++.++....+-+.++|+ +..+..++.....+.+++++++.|+|.||+|.|+++.++.++..
T Consensus 253 ~i~~FLiA~~~~~DGv-~til~~~~~fg~~~~gl--s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 253 NLVLFLIARFFYIDGV-NTILAMGGVFGAADLGL--SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred chHHHHHHHHHHHhhH-HHHHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 3444455555555655 33334444566779999 77999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchh
Q 008603 85 IGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWR 164 (560)
Q Consensus 85 i~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr 164 (560)
+.++...+...-..+.++-++.|++.|...+.+-.|.++++|+++-++.+++++..+..+.+++++......... .+-|
T Consensus 330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT-g~~r 408 (438)
T COG2270 330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT-GSSR 408 (438)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh-cchh
Confidence 888877777777777788899999999999999999999999999999999999999999999977664443322 2467
Q ss_pred HHHHHHHHHHHHHHHhhheeccCC
Q 008603 165 LMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 165 ~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
..+....++-++.++ .++.+|+.
T Consensus 409 ~g~~~i~vll~iGl~-~L~~v~~~ 431 (438)
T COG2270 409 AGVLSIIVLLLIGLL-LLLRVKVP 431 (438)
T ss_pred hHHHHHHHHHHhhHh-hEEeecCC
Confidence 766666666555444 35566653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=101.10 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH-HHHHHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPM-LIVSSVLYFIGGLV 89 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~-lli~~ll~ai~~il 89 (560)
..+.+++.......+...+|.+.++++...+..+.+...+...++.+++.++.|+++||++||+. +.+..++.+++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 326 (412)
T TIGR02332 247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL 326 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence 34444444454555666777777765322266788999999999999999999999999997764 44444444443332
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHH
Q 008603 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP-SWRLMLG 168 (560)
Q Consensus 90 ~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~-~Wr~~f~ 168 (560)
.....+....+++-++.+++.....+.......|.+|++.|++++++.+...++|..+++.+. ....+.. +|+..|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~--g~i~~~~g~~~~~~~ 404 (412)
T TIGR02332 327 ASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLI--GILKDATGSFNSGLW 404 (412)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhc--ccccccCCCCchhHH
Confidence 222222222222222223333223333445557889999999999999999999999986544 2333434 5998887
Q ss_pred HHHHHH
Q 008603 169 VLFIPS 174 (560)
Q Consensus 169 i~ai~~ 174 (560)
+.++..
T Consensus 405 ~~~~~~ 410 (412)
T TIGR02332 405 FVAALL 410 (412)
T ss_pred HHHHHH
Confidence 766643
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-07 Score=91.32 Aligned_cols=161 Identities=15% Similarity=0.151 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-------
Q 008603 21 DNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS------- 93 (560)
Q Consensus 21 ~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a------- 93 (560)
.....+...|.+++.+|+ +.++...+..+..+|..++ ++.|.+.|++|++.+++++.+...++..++..+
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~--sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~ 93 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGY--SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS 93 (250)
T ss_pred cccchhhhhHHHHHHhCC--CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 355666778999999999 8899999999999998775 889999999999999999999999998877552
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 008603 94 PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIP 173 (560)
Q Consensus 94 ~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~ 173 (560)
++++.+++..++.|.+.+.+.+.+.......|| +.||++.++.-....++..+-..+....+. ...-...+++...+
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~--~~~~~fll~la~~~ 170 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG--DDPSSFLLFLAVLP 170 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC--CChHHHHHHHHHHH
Confidence 467888888888888888777887777888998 579999999988877777664333333322 22233444444444
Q ss_pred HHHHHHhhheeccCC
Q 008603 174 SLIYFVLTIFYLPES 188 (560)
Q Consensus 174 ~ll~~il~~~~lpEs 188 (560)
.++.++. .++++..
T Consensus 171 ~~v~l~~-~~~vr~~ 184 (250)
T PF06813_consen 171 AVVCLVA-MFFVRPV 184 (250)
T ss_pred HHHHHHH-hhheecc
Confidence 4444333 3444433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-07 Score=98.35 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-PNVYVLLLARLLDGFGIGLAVTLVPI 119 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a-~s~~~lii~R~l~G~g~G~~~~~~~~ 119 (560)
+....+++.+...+..+...++.|.+.||+++|+.+.+++++.+++.++..++ ++.+.+++..++.|++.+...+....
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55677777777777777778899999999999999999988888887777664 57777778889999999888888888
Q ss_pred HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 120 YISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 120 ~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
++.+..|++.|++..+..+ ...+|..+++... ....+..+....|.+.++..++..++...-.+|.|
T Consensus 322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~--G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVS--GVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHhCCcccceehHhHHH-HHHHHHHHHHHHH--HHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 9999999999999887654 4557888885544 44455667778888877777776666555555544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-07 Score=98.24 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---
Q 008603 17 LQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW--- 92 (560)
Q Consensus 17 l~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~--- 92 (560)
+.++........+|. +++.+|. ++.+.+++.....++.+++.++.|++.||+|||+.+.++.++.+++.+++.+
T Consensus 266 ~~~~~~~~~~~~~p~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (485)
T TIGR00711 266 LLGLGLYGSFYLLPLYLQQVLGY--TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT 343 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence 333333334445564 5556788 7899999999999999999999999999999999999999888888877763
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 93 -SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 93 -a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
..+.+.+++..++.|++.+...+.....+.+..|+++|+.++++.+....+|..+++.+.
T Consensus 344 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 344 PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 234566777788999999988877788888999999999999999999999999885544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=95.84 Aligned_cols=151 Identities=20% Similarity=0.151 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHH-HHH-HHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG-RRPMLI-VSS-VLYFIGGL 88 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G-RR~~ll-i~~-ll~ai~~i 88 (560)
+..++............| ++.+.++. ++.+.+++.+...++.+++.++.|+++||+. ||+..+ ... .+..++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQEKGF--SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL 300 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 333333333333444444 55677888 7789999999999999999999999999864 333222 222 22222222
Q ss_pred HHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Q 008603 89 VMLW--SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLM 166 (560)
Q Consensus 89 l~~~--a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~ 166 (560)
+... ..+...+++..++.|+......+....+++|.+|++.|+++.++.+....+|..+++.+. ....+..+|+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~ 378 (379)
T TIGR00881 301 VYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPL--GYLADGFGWAGA 378 (379)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhH--HHHHHhhccccc
Confidence 2222 235556666777788766666666778899999999999999999999999999885544 344456677764
Q ss_pred H
Q 008603 167 L 167 (560)
Q Consensus 167 f 167 (560)
|
T Consensus 379 f 379 (379)
T TIGR00881 379 F 379 (379)
T ss_pred C
Confidence 3
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-06 Score=86.34 Aligned_cols=164 Identities=26% Similarity=0.420 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVLYIKREFHLETEP--TIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~--~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il 89 (560)
....+...++........+.+..+++. +. ...+++.+...++..++.++.|.++||+|||+.+..+.....++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 85 (338)
T COG0477 8 ALAALLLGLDLGLLSPALPLLLSTLSL--SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL 85 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHcCC--CchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 344445556666667778888888876 44 47899999999999999999999999999998888887766666666
Q ss_pred HHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHH-HHHHHHHHHHHHHHHHHhccccchhH
Q 008603 90 MLWSPN--VYVLLLARLLDGFGIGLAVTLVPIYISETAPP-EIRGLLNTLPQF-TGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 90 ~~~a~s--~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~-~~RG~~~~l~~~-~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
..+..+ .+.+++.|++.|++.+...+....+++|.+|. +.|+...+.... ...+|..+++............+||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 666665 89999999999999999999999999999998 678888888777 57777777764433322224568999
Q ss_pred HHHHHHHHHHHH
Q 008603 166 MLGVLFIPSLIY 177 (560)
Q Consensus 166 ~f~i~ai~~ll~ 177 (560)
.|.+........
T Consensus 166 ~~~~~~~~~~~~ 177 (338)
T COG0477 166 AFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHH
Confidence 777766666443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=111.60 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=113.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh---------------
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS--------------- 93 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a--------------- 93 (560)
.+++.+.+|. ++...|++.+.+.+|.+++.++.|+++++.++++.+.++.++.+++.+.+.+.
T Consensus 249 p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 249 PLLAKETLGG--DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 3456667898 77999999999999999999999999998887776666655555555444432
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 94 -----PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 94 -----~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
++.+.+++..++.|++.+...+..++++.+.+|++.||+++++.++...+|+.+++++...+.. ...++...|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~-~~~~~~~~~~ 405 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA-LGFSIPWIIL 405 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHH
Confidence 6777788889999999999999999999999999999999999999999999988766544331 2335566665
Q ss_pred HHHHHHHHHH
Q 008603 169 VLFIPSLIYF 178 (560)
Q Consensus 169 i~ai~~ll~~ 178 (560)
+.+++.++..
T Consensus 406 ~~~~~~~~~~ 415 (1140)
T PRK06814 406 FIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHH
Confidence 5555444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.4e-08 Score=100.27 Aligned_cols=182 Identities=14% Similarity=0.067 Sum_probs=119.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----------------ChHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 2 GGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLET----------------EPTIEGLIVAMSLIGATCITTCSGA 65 (560)
Q Consensus 2 ~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~----------------s~~~~gli~s~~~lG~iig~~~~G~ 65 (560)
+|..+..+.+++++-...|.......-+-...+..++.+ +..+.-- .-+..+.-+-|.++.+.
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd-llitslaefPGlLIt~~ 403 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD-LLITSLAEFPGLLITGV 403 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH-HHHHHHhhCCchhHHHH
Confidence 466677788888887777765554443333333222210 0111111 12233455678899999
Q ss_pred HHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHH
Q 008603 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGM 145 (560)
Q Consensus 66 LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~ 145 (560)
+.||+|||+.+..+.+++.++.++...+.+-..+.+.-|..-++..+.+.+.++|..|++|+..|++..|....+..+|.
T Consensus 404 iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIgg 483 (528)
T KOG0253|consen 404 IVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGG 483 (528)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhh
Confidence 99999999999999999999888877654332222222333333444556778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 146 FLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 146 ~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
++++++. +.. ...-....++.+.+.++..+.+.|+--|+
T Consensus 484 I~~p~iA--~~~--e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 484 IFSPVIA--MRA--ELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhHHH--HHh--ccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9997776 222 22233455667777777666655554466
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-06 Score=92.62 Aligned_cols=147 Identities=10% Similarity=-0.065 Sum_probs=110.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008603 28 AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDG 107 (560)
Q Consensus 28 ~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G 107 (560)
..|.+.+++|+ ++...+++.....++.+++.++.+++.||.+|+..+....+..+...++..+.++.+.+.+..++.|
T Consensus 239 ~~p~~~~~~g~--s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 239 IRPVYMNLAGF--GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35777788898 7788999999999999999999999999965444344333334444455456667778888889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
++.+...+..+.++.+..| +++++..++.....++|..+++.+. ....+..+++..+...++..++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~--G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIG--GYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccChhhHHHHHHHHHHHHHH
Confidence 9999998989989999887 5566777777778888888885554 4445667888888887766555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-07 Score=95.36 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-hhhHHHHH
Q 008603 22 NATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW-SPNVYVLL 100 (560)
Q Consensus 22 ~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~-a~s~~~li 100 (560)
+..++.+-|++.+..|+ +.+..+++...+.++.++|+.+.|+++|| +.|+.+.....+.++..+...+ .++.+..+
T Consensus 228 F~~ftYi~P~L~~v~g~--s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~ 304 (394)
T COG2814 228 FALYTYIRPFLESVAGF--SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304 (394)
T ss_pred hhhHHhHHHHHHHccCC--CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45566678899999999 78999999999999999999999999999 9999988887777777766655 45566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
+.-++.|+............+++ .-++.+..+.++....+++|..+|..++ ....+..++....++.+++.++.+++
T Consensus 305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lG--G~v~~~~g~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALG--GLVLDALGYAATGWVGAALLLLALLL 381 (394)
T ss_pred HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 67777888777776666666677 5578899999999999999999995544 55556689999999999998887766
Q ss_pred hhe
Q 008603 181 TIF 183 (560)
Q Consensus 181 ~~~ 183 (560)
.++
T Consensus 382 ~~~ 384 (394)
T COG2814 382 ALL 384 (394)
T ss_pred HHH
Confidence 543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=96.57 Aligned_cols=149 Identities=19% Similarity=0.310 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh-HHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRR-PMLIVSSVLYFIGGLVMLWS--PNVYVLLLARLLDGFGIGLAVTLVP 118 (560)
Q Consensus 42 ~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR-~~lli~~ll~ai~~il~~~a--~s~~~lii~R~l~G~g~G~~~~~~~ 118 (560)
.+..++..++..+-..+..|+.|.++|+-|+| +.+.+..++.+++++++.+. .+++...+.-++.-++.+...+...
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888899999999999999999999855 56666666677777777774 3455555556666678888888899
Q ss_pred HHHHhhcCCcch--------------------------hhHhhHHHHHHHHHHHHHHHHHHHHHhccc------cchhHH
Q 008603 119 IYISETAPPEIR--------------------------GLLNTLPQFTGCVGMFLAYCMVFGMSLMTA------PSWRLM 166 (560)
Q Consensus 119 ~~isE~~p~~~R--------------------------G~~~~l~~~~~~lG~~lg~li~~~l~~~~~------~~Wr~~ 166 (560)
+++.|+.+++.+ ++.++.-...+++|.++..++...+..... .+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999998 999999999999999988777666543322 246889
Q ss_pred HHHHHHHHHHHHHhhheeccCChh
Q 008603 167 LGVLFIPSLIYFVLTIFYLPESPR 190 (560)
Q Consensus 167 f~i~ai~~ll~~il~~~~lpEsP~ 190 (560)
+.+.++.-++..+...+++||.|+
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999988888887888898865
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-06 Score=90.13 Aligned_cols=119 Identities=16% Similarity=0.274 Sum_probs=94.0
Q ss_pred HH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHH
Q 008603 29 VL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS-----PNVYVLLLA 102 (560)
Q Consensus 29 lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a-----~s~~~lii~ 102 (560)
.| ++.++++. ++.+.+++.+...++.+++.++.|++.||+|||+.+..+.++..++.+++.+. ++...+++.
T Consensus 229 ~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (385)
T TIGR00710 229 APFVYIDIMGV--SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP 306 (385)
T ss_pred ChHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 44 45567888 77999999999999999999999999999999999988887777776666543 234555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH-HHHHHHH
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYC 150 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l-G~~lg~l 150 (560)
.++.|++.+...+....+..|..| ++|++.+++.+..... |.+.++.
T Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~ 354 (385)
T TIGR00710 307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL 354 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 778899999888888889899887 6789999988776544 5555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-07 Score=97.85 Aligned_cols=173 Identities=13% Similarity=0.185 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH--------HHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPM--------LIVSS 80 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~--------lli~~ 80 (560)
...+..+...+........+| ++.+.+|. +..+.++..+...++.+++.++.|+++||+++|+. +..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 265 AIWFAIFGHFWLYTILPTYLPTFISWVLRV--SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 344445555554555555566 55677898 77899999999999999999999999999864421 11111
Q ss_pred HHH--HHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 008603 81 VLY--FIGGLVMLW-SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL 157 (560)
Q Consensus 81 ll~--ai~~il~~~-a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~ 157 (560)
.+. ++..++... ..+....+++-++.+.+.+...+.......|..|. .+|.++++.+..+.+|.++++.+......
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 111 111111122 23444444444555555554444444455566665 89999999999999999888655432221
Q ss_pred cc-ccchhHHHHHHHHHHHHHHHhhheec
Q 008603 158 MT-APSWRLMLGVLFIPSLIYFVLTIFYL 185 (560)
Q Consensus 158 ~~-~~~Wr~~f~i~ai~~ll~~il~~~~l 185 (560)
.+ ...|+..|.+.++..++..++..++.
T Consensus 422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 422 QDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 11 13599999999888888766544443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-07 Score=97.80 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=105.2
Q ss_pred HHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh---hhHHHHHHH
Q 008603 27 GAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS---PNVYVLLLA 102 (560)
Q Consensus 27 ~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a---~s~~~lii~ 102 (560)
..+| +++..+|. ++.+.|+......++..++.++.|+++||+|||+.+..+.++.+++.+++.+. ++.+...+.
T Consensus 280 ~~~~~~lq~v~g~--s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (495)
T PRK14995 280 LLMAQELQFVHGL--SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGL 357 (495)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 3444 56667898 88999999999999999999999999999999999998888887777665432 355666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 103 RLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 103 R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
.++.|++.|...+.....+.+..|+++++.+.++.+....+|..++..+.
T Consensus 358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888889999999999999999999999999999885444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.4e-07 Score=96.35 Aligned_cols=129 Identities=14% Similarity=0.201 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh----CChH-HHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAG-AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL----GRRP-MLIVSSVLYFIG 86 (560)
Q Consensus 13 l~~fl~g~~~~~~~~-~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~----GRR~-~lli~~ll~ai~ 86 (560)
++.+..........+ +.+++.+.+|+ ++.+.|++..+..+..++..++.|.++||. |||+ .++++.+...+.
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl--~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGV--GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 344343333333333 44578888899 889999999999999999999999999986 7665 446666555544
Q ss_pred HHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHH
Q 008603 87 GLVMLWSP-------NVYVLLLARLLDGFGIGLAVTLVPIYISETAPP-EIRGLLNTLPQFTGCV 143 (560)
Q Consensus 87 ~il~~~a~-------s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~-~~RG~~~~l~~~~~~l 143 (560)
.+++...+ ....+++..++.+++.+...+...++..|+.+. ++|.+.+++-....++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 93 SVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred HHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 44432211 123344455677888888877777777887755 6788877766554343
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=97.42 Aligned_cols=170 Identities=18% Similarity=0.101 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG 87 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~ 87 (560)
+.+++-++..+=..-.++..+| +++++|++ ++.+.|.+...+.+...+.++++|+++||+|.++++.+...+++++.
T Consensus 221 W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~--~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~ 298 (417)
T COG2223 221 WLLSLLYFATFGGFVGFSAYLPMYLVTQFGL--SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAA 298 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHH
Confidence 3444455544444444455555 78899999 77999999999999999999999999999999999999999998888
Q ss_pred HHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008603 88 LVMLWS-------PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA 160 (560)
Q Consensus 88 il~~~a-------~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~ 160 (560)
++..+. .+...++..-+..++..|.....++-++..++|. +-|.+.++....+.+|.++-+...... ....
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~-~~~t 376 (417)
T COG2223 299 ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVS-LDLT 376 (417)
T ss_pred HHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHH-HHhc
Confidence 877764 3444444444444444444444555566666665 568889999999999876654333222 2223
Q ss_pred cchhHHHHHHHHHHHHHHHhhh
Q 008603 161 PSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 161 ~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
..+...|++...+.++++++.+
T Consensus 377 g~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 377 GSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999888888776544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-06 Score=88.29 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=105.8
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008603 32 IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIG 111 (560)
Q Consensus 32 i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G 111 (560)
+.+++|+ +..+++.+...-+..+.+..++.|.++||+|||+.+++.+++++++++. -..+++..++++|++-|++..
T Consensus 60 LY~~yg~--~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTS 136 (354)
T PF05631_consen 60 LYESYGF--SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATS 136 (354)
T ss_pred HHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH
Confidence 3467899 7799999999999999999999999999999999999999999998864 446899999999999999999
Q ss_pred HHHHHHHHHH-Hhhc----CCcchhhHhhHHHH-HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheec
Q 008603 112 LAVTLVPIYI-SETA----PPEIRGLLNTLPQF-TGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYL 185 (560)
Q Consensus 112 ~~~~~~~~~i-sE~~----p~~~RG~~~~l~~~-~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~l 185 (560)
...++--.|+ .|.- |.+..+...+...+ .+.+-.+++.++.-........+-..+|....++.++..+++...-
T Consensus 137 LLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 137 LLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 9888777764 5552 33333332222221 1111112221111111111122346788887777777776666556
Q ss_pred cCC
Q 008603 186 PES 188 (560)
Q Consensus 186 pEs 188 (560)
+|.
T Consensus 217 ~EN 219 (354)
T PF05631_consen 217 PEN 219 (354)
T ss_pred ccc
Confidence 665
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=92.14 Aligned_cols=159 Identities=18% Similarity=0.058 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---hHHHH-HHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGR---RPMLI-VSSVLYFIGGL 88 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GR---R~~ll-i~~ll~ai~~i 88 (560)
+.+++...........+|.+.++.+. +.. .+.......+..+++ .++++||+.| |+... ...++.++...
T Consensus 199 ~~~~~~~~~~~~~~~wlp~~L~~~g~--s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~ 272 (368)
T TIGR00903 199 AILGFGVALFDNLAIWLEAALRPAGL--EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL 272 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444555567766677777 433 455555555544444 4677777654 33323 23444444444
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
+..+..+....++.-++.+++.....+..+.+.+|.+|++.|++++++.+..+++|.++++....... .+-+..|.
T Consensus 273 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~----~~~~~~f~ 348 (368)
T TIGR00903 273 ALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI----SSAEAYFT 348 (368)
T ss_pred HHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh----cCHHHHHH
Confidence 44444444444555566777777777778889999999999999999999999999988865554333 15667787
Q ss_pred HHHHHHHHHHHhh
Q 008603 169 VLFIPSLIYFVLT 181 (560)
Q Consensus 169 i~ai~~ll~~il~ 181 (560)
+.+++.++.++.+
T Consensus 349 ~~~~~~~i~~~~~ 361 (368)
T TIGR00903 349 FLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 7788777766654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=92.68 Aligned_cols=145 Identities=11% Similarity=0.051 Sum_probs=110.1
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008603 30 LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFG 109 (560)
Q Consensus 30 p~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g 109 (560)
+++++.+|. ++.+.|++.+...+|.++++++.+++.||.++|+++..+. +.++..++..+.++++.+++.-++.|++
T Consensus 230 ~~~~~~lg~--s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 230 AWAPVALGI--TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 456777888 7799999999999999999999999999999998887775 3444444556667777777788899999
Q ss_pred HHHHHHHHHHHHHhhcCCcc-hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 110 IGLAVTLVPIYISETAPPEI-RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 110 ~G~~~~~~~~~isE~~p~~~-RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
.+...+...+.+.+..|++. +|++.++.+...++|..++..+.... ...+-|..+.+..+..++.+.+
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL---VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHH
Confidence 99988888888888877665 79999999999999998886555433 2345555555544444444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.7e-07 Score=92.63 Aligned_cols=126 Identities=25% Similarity=0.394 Sum_probs=106.4
Q ss_pred HHHHHHHHHHH-HHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh---hH
Q 008603 22 NATIAGAVLYI-KREFHLETE-PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP---NV 96 (560)
Q Consensus 22 ~~~~~~~lp~i-~~~~gls~s-~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~---s~ 96 (560)
.......+|.+ .++++. + ..+.+.+.+...++.+++.++.|+++||+|+|+.+.+......+..+.+.+.. +.
T Consensus 222 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (352)
T PF07690_consen 222 FSGFSFFLPLYLQEVLGF--SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSP 299 (352)
T ss_dssp HHHHHHHHHHHCCHHHHC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHH
T ss_pred HHHhhcccchhhhhccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33455566665 888998 6 68999999999999999999999999999998888887777777766665533 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHH
Q 008603 97 YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAY 149 (560)
Q Consensus 97 ~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~ 149 (560)
...++.-++.|++.+...+....++.|.+|+++||++.++.+...++|..++|
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 67777888999999999999999999999999999999999999999998874
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-06 Score=93.80 Aligned_cols=175 Identities=12% Similarity=0.140 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCh-HHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAG-AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW----LGRR-PMLIVSSVLYFIG 86 (560)
Q Consensus 13 l~~fl~g~~~~~~~~-~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr----~GRR-~~lli~~ll~ai~ 86 (560)
++.+........... ++.++.+.+|+ ++...|.+..+.-+--.+.-|+.|.++|| +||| +.++++.+..+++
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl--~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~ 93 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGI--PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIV 93 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHH
Confidence 343333333333443 45567788899 88999999999999999999999999995 7975 6777887888887
Q ss_pred HHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhHHHHHHHHHHHHHHHHHHHHHh-c
Q 008603 87 GLVMLWSPN------VYVLLLARLLDGFGIGLAVTLVPIYISETAP-PEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL-M 158 (560)
Q Consensus 87 ~il~~~a~s------~~~lii~R~l~G~g~G~~~~~~~~~isE~~p-~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~-~ 158 (560)
.+++...|+ +..+.+.-++..++.........++.+|+.+ +++|.+.+++.....++|..+++.+...+.. .
T Consensus 94 ~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 94 CVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776655442 3445556666777888887888889999998 7899999999999999888776555433221 1
Q ss_pred c----ccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 159 T----APSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 159 ~----~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
. ..+|+....+.+++.++..++.++..+|.+
T Consensus 174 g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~ 208 (460)
T PRK11462 174 GGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERV 208 (460)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhcceecc
Confidence 1 136888888888877776666555667753
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-06 Score=90.51 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=105.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Q 008603 28 AVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW-SPNVYVLLLARLLD 106 (560)
Q Consensus 28 ~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~-a~s~~~lii~R~l~ 106 (560)
..|++.+.+|. ++...+++.+...++.++++++.|+++||+|+|+.+.++..+.+++.++... .++.+..++..++.
T Consensus 222 ~~~~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK10091 222 IKPYMMFISGF--SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFIC 299 (382)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777898 7789999999999999999999999999999999999888888777765543 45555666666677
Q ss_pred HHHHHHHHHHHHH-HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHhhh
Q 008603 107 GFGIGLAVTLVPI-YISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT-APSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 107 G~g~G~~~~~~~~-~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~-~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
+++.....+.... ...+..|.+.++... .+....+|..+++... ....+ ..+|+..+.+.++..++......
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCG--GMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHh--HHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 7766554444343 444444555555543 3566778888885554 33333 35788888888777666544433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=92.99 Aligned_cols=128 Identities=18% Similarity=0.312 Sum_probs=98.2
Q ss_pred HHHHHHHHH-HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh--hHHHHH
Q 008603 24 TIAGAVLYI-KREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLL 100 (560)
Q Consensus 24 ~~~~~lp~i-~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~--s~~~li 100 (560)
......|++ ++.+|. ++...++......++.+++.++.++++||+|+|+.+.++.++.+++.+++.+.+ +++.++
T Consensus 246 ~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 323 (448)
T PRK09848 246 AVSASSLFYVRYVLND--TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL 323 (448)
T ss_pred HHhhhheeeEeeecCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 333345543 445665 455555555555677888999999999999999999999988888887776643 567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCc-------chhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAPPE-------IRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p~~-------~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
+..++.|++.+...+...++.+|..+.+ .+|..+++.++...+|..++..+..
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999988753 4588899999988888888765543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.9e-07 Score=97.89 Aligned_cols=182 Identities=18% Similarity=0.133 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM 90 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~ 90 (560)
+.+..|.+...........+.+.+..+.+.+. .+...+..+..++++.++..+.||+|||+.++.+...++++.+++
T Consensus 300 ~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~ 376 (513)
T KOG0254|consen 300 LLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVIL 376 (513)
T ss_pred HHHHHHHHHhCCceEEeehHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Confidence 34444444444455555677777888875332 444555555666777788999999999999999999999998877
Q ss_pred HhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008603 91 LWSPNV--------------YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS 156 (560)
Q Consensus 91 ~~a~s~--------------~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~ 156 (560)
+..... ....++-++..+..+.. +..+.+++|.+|.+.|+++.++......+..++-..... .
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~--~ 453 (513)
T KOG0254|consen 377 AVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP--F 453 (513)
T ss_pred HHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH--H
Confidence 753211 12222233333333333 666778999999999999999987776666554422211 1
Q ss_pred hccccchhHHHHHHHHHHHHHHH-hhheeccCChhhhhhhcchHHHHHH
Q 008603 157 LMTAPSWRLMLGVLFIPSLIYFV-LTIFYLPESPRWLVSKGRMLEAKKV 204 (560)
Q Consensus 157 ~~~~~~Wr~~f~i~ai~~ll~~i-l~~~~lpEsP~~L~~~gr~~ea~~~ 204 (560)
.....++...|++.+....+..+ .+++++||+ |++..|..+.
T Consensus 454 ~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET------kg~sleei~~ 496 (513)
T KOG0254|consen 454 ITEALGIGGTFGYFGGICLLSLIIFVFFFVPET------KGLTLEEINE 496 (513)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHheEEcccC------CCCcHHHHHH
Confidence 11121245677777777777666 788999999 7776655443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-06 Score=89.91 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=98.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHH
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMS-LIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM---LWS-PNVYVLLLAR 103 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~-~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~---~~a-~s~~~lii~R 103 (560)
.+++.+++|+ ++.+.+++.... .++.+++.++.|++.||+|||+.+.++.++.++..+.+ ++. ++.+.++++-
T Consensus 233 ~~~l~~~~G~--~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 233 TTFLIRGAGF--SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4567778898 778999988655 45688999999999999999998877776665554433 333 3555555544
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 104 ----LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 104 ----~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
+..|++.+...+....++.+.+|.+.++ +.+...++|..++.. .+....+..||+..|.+.++++++.++
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~--~~G~l~~~~G~~~~f~~~~~~~~~~~~ 384 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGP--TSGYLVEAYGWPGFYLMTVVIALPGLA 384 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777766554 334444555554422 344556778999999999888877655
Q ss_pred h
Q 008603 180 L 180 (560)
Q Consensus 180 l 180 (560)
+
T Consensus 385 ~ 385 (402)
T PRK11902 385 L 385 (402)
T ss_pred H
Confidence 4
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=96.46 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH-HHHH-HHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIK-REFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVS-SVLY-FIGG 87 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~-~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~-~ll~-ai~~ 87 (560)
.+..+|+.++..++..+..|... +..|+ ++++.|.+.++..+..++.+|+.|.++||+|.|+-+++. .++. ..+.
T Consensus 12 ~s~~~f~~Ff~~gi~~pF~~iWL~~~~GL--s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p 89 (412)
T PF01306_consen 12 LSLFYFFYFFIWGIFLPFFPIWLTQVAGL--SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP 89 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 34455555666677777777555 45899 889999999999999999999999999999955544332 2222 2233
Q ss_pred HHH-Hhh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008603 88 LVM-LWS----PNV-YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAP 161 (560)
Q Consensus 88 il~-~~a----~s~-~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~ 161 (560)
+.. .+. .|+ ...+++-+..|+......++.-+|+.... ++.+.-.|-.-+|+++|..++..+...+.. .
T Consensus 90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~---i 164 (412)
T PF01306_consen 90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN---I 164 (412)
T ss_dssp HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee---e
Confidence 222 222 232 23333334445545555555555544442 333455566778888888887555543332 2
Q ss_pred chhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 162 SWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 162 ~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
+-...|++..+.+++..++..+..|+.+
T Consensus 165 ~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 165 NPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 4567888877777666665555555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-06 Score=89.01 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVLYIKREFH-LETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML 91 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i~~~~g-ls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~ 91 (560)
+..++.+..........+.+-++.| . +....+.+.+...+.-++.-.+.+++..|+|.|++++++++..++=..+++
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~--~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGY--SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666677777 5 456777777788888888999999999999999999999999999888888
Q ss_pred hh-hhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH-HHHHHHHHHHHHHHHHhcc----cc
Q 008603 92 WS-PNVYVLL----LARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFT-GCVGMFLAYCMVFGMSLMT----AP 161 (560)
Q Consensus 92 ~a-~s~~~li----i~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~-~~lG~~lg~li~~~l~~~~----~~ 161 (560)
+. ++.+... +.-.+.|+..+.+..++..|+.+.+|++.|+++.++++.. ..+|..++..+...++... ..
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 76 4544333 3345799999999999999999999999999999998765 5688888865554433211 22
Q ss_pred chhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 162 SWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 162 ~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
.|...+.+++++.++..++.+++.+|+
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 466777788887777777666666664
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-06 Score=86.39 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVL-YIKRE--FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp-~i~~~--~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il 89 (560)
++.|+..-.........+ ++.+. +|+ ++.+.+...+.+..+.++++++.+++.||+|+|+++.++.++.+++.++
T Consensus 147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~--s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l 224 (310)
T TIGR01272 147 LGIFVYVGAEVSAGSFLVNFLSDPHALGL--PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG 224 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 444443323333344444 55432 577 7899999999999999999999999999999999998888888877766
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q 008603 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGV 169 (560)
Q Consensus 90 ~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i 169 (560)
....++...+ ..-++.|++.+..+|.......+..|++ .+++.++. ....+|..+.+.+. ....+..+.+..|++
T Consensus 225 ~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~--G~lad~~g~~~a~~v 299 (310)
T TIGR01272 225 AALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQ--GSLADCLGIQLAFAL 299 (310)
T ss_pred HHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHH--HHHHHhccchHHHHH
Confidence 6555543332 3556889999999999998888888764 45566664 45667777775433 344455677778775
Q ss_pred HHHH
Q 008603 170 LFIP 173 (560)
Q Consensus 170 ~ai~ 173 (560)
..+.
T Consensus 300 ~~~~ 303 (310)
T TIGR01272 300 PVPC 303 (310)
T ss_pred HHHH
Confidence 5444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.1e-07 Score=98.58 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG--RRPMLIVSSVLYFIGG 87 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G--RR~~lli~~ll~ai~~ 87 (560)
..+++..+......+....+|.+.++.+. +..+.+.+.++..+..++++++.|+++|+.. ++.+..++.++.+++.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGL--SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 34445555555556666678888889999 7799999999999999999999999999988 5567778888888888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc-hhHH
Q 008603 88 LVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLM 166 (560)
Q Consensus 88 il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~-Wr~~ 166 (560)
+.+.++++++.++..-.+.|++.|.+....+..+.|+.+.++-..+.++..++..++..+++-+. ....+..+ |...
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPia--g~~~d~tg~Y~~~ 457 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIA--GLLYDITGNYDHA 457 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccc--eeeeeccCCeeee
Confidence 88899999999999999999999999888889999999999999999999999999999884433 35555544 9999
Q ss_pred HHHHHHHHHHHHHh
Q 008603 167 LGVLFIPSLIYFVL 180 (560)
Q Consensus 167 f~i~ai~~ll~~il 180 (560)
|+++++..++..++
T Consensus 458 f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 458 FYFCGLCFLLSAVL 471 (509)
T ss_pred hhhcChHHHHHHHH
Confidence 99999988887654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-06 Score=90.48 Aligned_cols=151 Identities=13% Similarity=-0.006 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD-WLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLL 105 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD-r~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l 105 (560)
..+|.+.++.+. ++...+++.+...++..+...+.+.+.| |++.++.+..++++.+++.+++.++++++.+++..++
T Consensus 229 ~~~p~~~~~~~~--~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 229 LMLPIMVNDIAG--SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred HhhhhhHHhhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 346665556554 4577788877777766655555566655 5666677778888888888888888888877778888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc-ccc-hhHHHHHHHHHHHHHHH
Q 008603 106 DGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT-APS-WRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 106 ~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~-~~~-Wr~~f~i~ai~~ll~~i 179 (560)
.+++.+...+...+++.+.+|+++||+..++.+....+|..+++.+...+.... ..+ -...+.+.++..++..+
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 899888888888999999999999999999999999999999866554443221 112 24455555555555443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-06 Score=87.66 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLYFIGGLVMLWSPNVYVLLL 101 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ai~~il~~~a~s~~~lii 101 (560)
......+|.+.++.|. +..+.+.+.+...++.++++++.|+++||+ +||+.+.++.++.+++.+++.+.++.....
T Consensus 214 ~~~~~~lp~~~~~~g~--~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (355)
T TIGR00896 214 YSLIGWLPAILISHGA--SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA- 290 (355)
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence 3344456766667888 778999999999999999999999999999 567777777777777777776655433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAP-PEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p-~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
.-++.|++.|...+.....+.+..+ ++.++...++.+....+|..+++.+.
T Consensus 291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899998888877777765554 56778888888888888877775444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.3e-07 Score=95.82 Aligned_cols=152 Identities=21% Similarity=0.198 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhhh--hHH
Q 008603 25 IAGAVLYIKREFH----LETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLYFIGGLVMLWSP--NVY 97 (560)
Q Consensus 25 ~~~~lp~i~~~~g----ls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ai~~il~~~a~--s~~ 97 (560)
-+.+..|+..+++ + ++++..-+.+++..-.=+..+++|+++||+ |+|+.+..+.++++++.++.+.++ +..
T Consensus 41 raiL~~Yl~~~~~~gLg~--~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~ 118 (498)
T COG3104 41 RAILILYLYYQLGDGLGF--DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG 118 (498)
T ss_pred HHHHHHHHHHhccccCCc--ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3445567777776 7 667766666666665567888999999996 999999999999999999999874 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Q 008603 98 VLLLARLLDGFGIGLAVTLVPIYISETAPPEI--RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSL 175 (560)
Q Consensus 98 ~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~--RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~l 175 (560)
.+.++-.++++|.|.+=+....++.|.+|++. |-..++++.+..++|.++++++. .......+|...|.+.++-..
T Consensus 119 gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~--~~~~~~~g~~~gF~~aavGm~ 196 (498)
T COG3104 119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT--GLLAINYGWHVGFGLAAVGMI 196 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH--HHHHHhhCHHHHHHHHHHHHH
Confidence 89999999999999999999999999998743 56678888899999999996655 444567789999988888777
Q ss_pred HHHHh
Q 008603 176 IYFVL 180 (560)
Q Consensus 176 l~~il 180 (560)
+.++.
T Consensus 197 ~gl~~ 201 (498)
T COG3104 197 IGLVI 201 (498)
T ss_pred HHHHH
Confidence 66544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=92.05 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=160.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH
Q 008603 2 GGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSV 81 (560)
Q Consensus 2 ~~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~l 81 (560)
+|+|+++++.++-++..++.+-.++++..+...-|+ +....-|...++.+.++...+.+-|+.|++|-|..++++..
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 478888888888888888888777888888888888 44667788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh------hHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 82 LYFIGGLVMLWSP------NVY--VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 82 l~ai~~il~~~a~------s~~--~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
+.+++..+-..+. .++ ....+..+.+.+.-.......-..+-++|+++|..++.+..+...+|..++.++..
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 9999998766542 334 55566677766666555544556678899999999999988888888888866654
Q ss_pred HHHhcc----ccchhH--HHHHHHHHHHHHHHhhheeccCChhhh----hhhcchHHHHHHHHHHhcCcChHHHHHHHHH
Q 008603 154 GMSLMT----APSWRL--MLGVLFIPSLIYFVLTIFYLPESPRWL----VSKGRMLEAKKVLQSLRGREDVAGEMALLVE 223 (560)
Q Consensus 154 ~l~~~~----~~~Wr~--~f~i~ai~~ll~~il~~~~lpEsP~~L----~~~gr~~ea~~~l~~l~~~~~~~~~i~~l~~ 223 (560)
.+.-.. ...|-. +|+...++..+.++++.+..++.|+.- ..+.+...-.+.+.+. ..+....+..+++
T Consensus 198 ilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~--~~n~~F~il~~~y 275 (480)
T KOG2563|consen 198 ILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSC--FKNRQFIILAICY 275 (480)
T ss_pred eecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHH--HcCccHHHHHHHH
Confidence 443222 334544 455555555555566666666644221 1111100111222222 2344556777888
Q ss_pred HHHhhhhhhHHHHHh
Q 008603 224 GLGVGGETSLEEYII 238 (560)
Q Consensus 224 ~l~~g~~~t~~~~i~ 238 (560)
+...+....+...+.
T Consensus 276 gi~~g~F~~l~~~l~ 290 (480)
T KOG2563|consen 276 GIGLGLFNSLSTLLN 290 (480)
T ss_pred hhhHHHHHHHHHHhh
Confidence 888877777665544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-06 Score=89.67 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----hhhHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW-----SPNVY 97 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~-----a~s~~ 97 (560)
.......+++.+.... ++...+++.+...++.+++.++.++++||+|||+.+.++.++.+++.+.+.+ .++.+
T Consensus 248 ~~~~~~~~y~~~y~~~--~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
T PRK10429 248 NIINGFAIYYFTYVIG--DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL 325 (473)
T ss_pred HHHhhheeeEEEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence 3334444555554433 4566777777777888999999999999999999999888776666655432 34566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 98 VLLLARLLDGFGIGLAVTLVPIYISETAP-------PEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 98 ~lii~R~l~G~g~G~~~~~~~~~isE~~p-------~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
.+++.-++.|++.+...+..+++++|..+ .+..|...++..+..-+|..+++.+..
T Consensus 326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788999999999999999999966 333466788888887788877755443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-05 Score=84.30 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=82.8
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHH
Q 008603 31 YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW----SPNVYVLLLARLLD 106 (560)
Q Consensus 31 ~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~----a~s~~~lii~R~l~ 106 (560)
++.+.+|. ++.+.+++.+...++.+++.++.|++.||+|||+.+.++..+..+..+.... ..+++.+.++-.+.
T Consensus 220 ~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T PRK11102 220 VYIELNGV--SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF 297 (377)
T ss_pred HHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45677888 7899999999999999999999999999999999988887765444333222 22444444444455
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH-HHHHHHHHHH
Q 008603 107 GFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFT-GCVGMFLAYC 150 (560)
Q Consensus 107 G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~-~~lG~~lg~l 150 (560)
+.+.+........++.|..| +.++..+++.+.. ..+|..++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~ 341 (377)
T PRK11102 298 VGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGAL 341 (377)
T ss_pred HHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566667778776 7889988886554 3455555543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9e-06 Score=86.28 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=77.0
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008603 31 YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGI 110 (560)
Q Consensus 31 ~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~ 110 (560)
++.+++|. ++.+.+.+.+...++.+++.++.+++.||+|||+.+.++.++..++.+++.+.++....++.-++.+++.
T Consensus 229 ~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 306 (392)
T PRK10473 229 LLMEQMGF--SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGF 306 (392)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677898 7788999999999999999999999999999999999999988888887777665554444444545444
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q 008603 111 GLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLA 148 (560)
Q Consensus 111 G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg 148 (560)
+...+. .+..+..|.++|+ +.......+++.++
T Consensus 307 ~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g 339 (392)
T PRK10473 307 SVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCG 339 (392)
T ss_pred HHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHH
Confidence 444332 3445566655553 22233334444444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.6e-06 Score=90.67 Aligned_cols=167 Identities=14% Similarity=0.012 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVLYI-KREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML 91 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i-~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~ 91 (560)
+.++..+-.....+..+|++ ++.+. ............+...+.++++|+++||+|+|+++.++.++.+++.....
T Consensus 259 lly~~tFG~fvg~s~~lp~~~~~~~~----~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~ 334 (462)
T PRK15034 259 LLYLATFGSFIGFSAGFAMLAKTQFP----DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF 334 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455544 44442 22222233344567788899999999999999999998887777664322
Q ss_pred -hh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------------cchhhHhhHHHHHHHHH
Q 008603 92 -WS-----PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPP---------------------EIRGLLNTLPQFTGCVG 144 (560)
Q Consensus 92 -~a-----~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~---------------------~~RG~~~~l~~~~~~lG 144 (560)
.. .+++.+.+.-+...++.|.....++-++..++|. ++-|.+.|+....+.+|
T Consensus 335 l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~G 414 (462)
T PRK15034 335 LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVG 414 (462)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcc
Confidence 22 2466666666665566666666667777777774 14567778888888887
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhee
Q 008603 145 MFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 145 ~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
.++-+...-.. .....++...|++..+..+++.++.+.+
T Consensus 415 gf~~p~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 415 GFFIPQAFGMS-LNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred cchhhHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77765333222 2223457777888888877777665544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=86.90 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh--hhhHHHHHH
Q 008603 24 TIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW--SPNVYVLLL 101 (560)
Q Consensus 24 ~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~--a~s~~~lii 101 (560)
..+...+++.+.. +. .+...+.+.....+..+++.++.++++||+|+|+.+.++.++.++..+...+ .++.+.+++
T Consensus 247 ~~~~~~~y~~~~~-~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (444)
T PRK09669 247 TRGGATLYYVNYV-LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFA 324 (444)
T ss_pred HHhhhhheeeeee-cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence 3334445544433 21 3344555666667888899999999999999999998887766654443333 346777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-------CcchhhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAP-------PEIRGLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p-------~~~RG~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
..++.|++.+...+..+.+++|..+ .+..|...+...+...+|..+++.+...
T Consensus 325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999886 2334667788877888888887655543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-06 Score=91.08 Aligned_cols=177 Identities=20% Similarity=0.293 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCC-hHHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW----LGR-RPMLIVSSVLYF 84 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr----~GR-R~~lli~~ll~a 84 (560)
-.++.+............+. ++.+.+|+ ++...|.+..+.=+--++.-|+.|.++|| +|| ||.++++.+..+
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gi--s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~ 94 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGL--SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA 94 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCC--cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence 34445555444444444444 56777899 88999999999999999999999999994 785 478888888888
Q ss_pred HHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhHHHHHHHHHHHHHHHHHHHH-H
Q 008603 85 IGGLVMLWSPN------VYVLLLARLLDGFGIGLAVTLVPIYISETAP-PEIRGLLNTLPQFTGCVGMFLAYCMVFGM-S 156 (560)
Q Consensus 85 i~~il~~~a~s------~~~lii~R~l~G~g~G~~~~~~~~~isE~~p-~~~RG~~~~l~~~~~~lG~~lg~li~~~l-~ 156 (560)
+.++++..+++ ....++...+.+++......+..++.+|+.+ +++|.+..++-+...++|.++.......+ .
T Consensus 95 i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 95 IVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred HHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877663 4455666778888888888888889999986 58899999999999999976654443222 2
Q ss_pred hcc----ccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 157 LMT----APSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 157 ~~~----~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
... ..+|+..-.+.+++.++.+++.++-.+|-+
T Consensus 175 ~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 175 LFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 221 348998888888888888888777788764
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-06 Score=90.04 Aligned_cols=145 Identities=15% Similarity=0.224 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYI 121 (560)
Q Consensus 42 ~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~i 121 (560)
....|.+.+...+.-++...++.++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+.......-|+
T Consensus 258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI 337 (412)
T PF01306_consen 258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI 337 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcchhhHhhH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 122 SETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 122 sE~~p~~~RG~~~~l-~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
++.+|++..++...+ ++....+|..+.+ .+.....+..|.+..|++.+.+.++..++..+.++..
T Consensus 338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s--~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 338 TAHFDKRLSATLYLVGFQFAKQIGIIILS--PLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHS-GGGHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHh--hhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999988777766 3666677777653 3445566778999999999998888777777766643
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-05 Score=87.68 Aligned_cols=144 Identities=7% Similarity=-0.054 Sum_probs=104.4
Q ss_pred HHHH-HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 008603 29 VLYI-KREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDG 107 (560)
Q Consensus 29 lp~i-~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G 107 (560)
.+++ ++.+|+ ++...++....+.++.++++++.+++.||+|||+++..+.++.++..++..+.++.. .+..-++.|
T Consensus 282 ~~~l~~~~~g~--s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g 358 (438)
T PRK10133 282 IRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCS 358 (438)
T ss_pred HHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence 3453 456798 889999999999999999999999999999999999888888777666666655543 245567899
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~-Wr~~f~i~ai~~ll~~i 179 (560)
++.+..+|..+....+.+|.+ .+.+.++..+.. +|..+++.+. ....+..+ -|..|+++.+..+...+
T Consensus 359 lg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~--G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVM--GFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHH--HHHHHhccchHHHHHHHHHHHHHHHH
Confidence 999999999999999987764 566777765433 4444443222 23334444 67788766665554433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-06 Score=89.93 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVM 90 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~ 90 (560)
.+..++............+++.++ ++. +...+.+..+..++.+++.++.++++||+|+|+++..+.++.+++.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~---~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGN---EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence 334444445555555556655554 554 3577888888999999999999999999999999999999999999988
Q ss_pred Hhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------cchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 91 LWSP--NVYVLLLARLLDGFGIGLAVTLVPIYISETAPP-------EIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 91 ~~a~--s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~-------~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
.+.+ |.+.+++.-++.|++.+...+..+.+++|..+. +..|..+++..+...+|..++..+..
T Consensus 308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8876 999999999999999999999999999998873 34588888888888888877755443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-05 Score=81.70 Aligned_cols=123 Identities=18% Similarity=0.121 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---h--hhhHHHHHH
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML---W--SPNVYVLLL 101 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~---~--a~s~~~lii 101 (560)
...|.+.+++|. ++.+.++......++.+++.++.+++.||+|+|+.+....++.+++.+.+. + .++.+.+++
T Consensus 224 ~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (401)
T PRK11043 224 TGSPFILEQMGY--SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI 301 (401)
T ss_pred HHhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 346666677888 778899888888888999999999999999999877665555444433221 2 345555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 102 ~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
.-.+.|++.+...+.......+..| ++||++.++.+.....+..+++.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~ 351 (401)
T PRK11043 302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLV 351 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888777776 5799999999887766666664443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-06 Score=83.32 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
...+++.++|+++....+-..... -..+++.||+ ++...+.+.+.....+.+.+++.|.++|++||+...+.+.++
T Consensus 264 ppfw~~~iicv~yyva~fPFi~lg--~~fF~~rfGl--S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFITLG--PMFFQKRFGL--SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhh--HHHHHHhhCC--ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 345556666666655444333332 2367899999 789999999999998999999999999999999776666554
Q ss_pred HHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc-
Q 008603 83 YFI-GGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA- 160 (560)
Q Consensus 83 ~ai-~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~- 160 (560)
..+ +-....| +++.=.+...+.|++........+..++.+.|.++-|++.++.+...++|..+.+++...+...+.
T Consensus 340 ~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 340 LTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred HHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence 443 3333333 223333455678888888877788899999999999999999999999999888655533322221
Q ss_pred cchhH-HHHHHHHHHHHH
Q 008603 161 PSWRL-MLGVLFIPSLIY 177 (560)
Q Consensus 161 ~~Wr~-~f~i~ai~~ll~ 177 (560)
..|-- .|.++..++++.
T Consensus 418 y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 418 YDNLEAFFLIIGLMALTS 435 (459)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 23433 344444555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=88.65 Aligned_cols=97 Identities=18% Similarity=0.055 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc------------
Q 008603 92 WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT------------ 159 (560)
Q Consensus 92 ~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~------------ 159 (560)
...++..+++.-|+.|.|.+...+.++.|++++.|++++.+.+++.+..+.+|.+++|++...+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999988877655321
Q ss_pred --ccchhHHHHHHHHHHHHHHHhh-heeccCC
Q 008603 160 --APSWRLMLGVLFIPSLIYFVLT-IFYLPES 188 (560)
Q Consensus 160 --~~~Wr~~f~i~ai~~ll~~il~-~~~lpEs 188 (560)
...|++.|++.+++.++..++. ..-.||.
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~ 117 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL 117 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 1479999986666655544432 3334554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-05 Score=84.68 Aligned_cols=137 Identities=13% Similarity=0.083 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC-----hHHH--HHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHH
Q 008603 45 EGLIVAMSLIGATCITTCSGAIADWLGR-----RPML--IVSSVLYFIGGLVMLW---------SPNVYVLLLARLLDGF 108 (560)
Q Consensus 45 ~gli~s~~~lG~iig~~~~G~LsDr~GR-----R~~l--li~~ll~ai~~il~~~---------a~s~~~lii~R~l~G~ 108 (560)
.+++.+...+..++.+++...+..++.| +... .+++++.+++.+.+++ ..|++.+++..++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 4566666666666776665554444433 3433 6778888777777664 4589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhe
Q 008603 109 GIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 109 g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
|-....+..+.++++.+|++.||+.+++......+|..++..+.... ....+|...|...++..++..++.++
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG--AVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999885555333 23446888888888777776665443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.3e-07 Score=97.18 Aligned_cols=188 Identities=14% Similarity=0.011 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHH------HHH-HHHHHHHHHHHHHHHHHHHhhhCChHHHHH
Q 008603 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIE------GLI-VAMSLIGATCITTCSGAIADWLGRRPMLIV 78 (560)
Q Consensus 6 li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~------gli-~s~~~lG~iig~~~~G~LsDr~GRR~~lli 78 (560)
..++..+..+|+.-..+...+.....+.++++...+.... ... ..+..++.+.+..+...++|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5667788888888888887777788888887763322211 111 122223344466677888999999999999
Q ss_pred HHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 79 SSVLYFIGGLVMLWSPN----VYVLLLARLLDGFGI-GLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 79 ~~ll~ai~~il~~~a~s----~~~lii~R~l~G~g~-G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
+.+++.+..+.++...| ...+++...+..+.. -+..+.+..+-+|.+|.+.|++..++....+-.|.+++....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F- 462 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF- 462 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh-
Confidence 99999999988887655 222333333332222 222344556779999999999999999999999999984433
Q ss_pred HHHhcc-----ccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHH
Q 008603 154 GMSLMT-----APSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAK 202 (560)
Q Consensus 154 ~l~~~~-----~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~ 202 (560)
....+ ..+.|..|++.+.+.++..+ ..+++||| ++|..|..
T Consensus 463 -~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~-~T~l~pEt------k~~~leei 508 (538)
T KOG0252|consen 463 -LYLTDHNYPPNIGVRNVFIILAGCMLLGIL-FTLLIPET------KGKSLEEI 508 (538)
T ss_pred -hHhhhccCCccccchHHHHHHHHHHHHhHh-eeEEeecc------cccCHHHh
Confidence 44444 55789999999998888554 46778898 66655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-06 Score=85.30 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=85.6
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh--hh--hHHHHHHHHHH
Q 008603 30 LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW--SP--NVYVLLLARLL 105 (560)
Q Consensus 30 p~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~--a~--s~~~lii~R~l 105 (560)
.++++.+|. ++.+.+++.+...+..++++++.|+++||+|||+.+..+..+.+.+.++..+ .+ +...+.+.-++
T Consensus 250 ~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
T TIGR00886 250 MFFKDQFGL--SKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVA 327 (366)
T ss_pred HHHHHHcCC--cHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 356677898 7788999999999999999999999999999998887777666666555543 22 55555555666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q 008603 106 DGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVG 144 (560)
Q Consensus 106 ~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG 144 (560)
.++..|...+....++++.+| +++|..+++.+...++|
T Consensus 328 ~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 328 LFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 666666666677778888887 68999999887776654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.9e-05 Score=83.67 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhhCChHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHH
Q 008603 46 GLIVAMSLIGATCITTCS----GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPN---------VYVLLLARLLDGFGIGL 112 (560)
Q Consensus 46 gli~s~~~lG~iig~~~~----G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s---------~~~lii~R~l~G~g~G~ 112 (560)
+++.+...+..++..++. +++.+|++..+.+.+++++.+++.++++++.+ .+.+++.+++.|++...
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 444444554455555555 55555566667888899999999888777654 46788999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh----c----cccchhHHHHHHHHHHHHHHHhhhe
Q 008603 113 AVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL----M----TAPSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 113 ~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~----~----~~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
..+....++.+..|++.||+.+++......+|..++..+.-.... . ...+....|...++.+++..++.+.
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887777777665333311110 0 0113567777777776655444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-05 Score=82.69 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLG-RRPMLIVSSVLYFIGGLVMLWSPN---VYVLLLARLLDGFGIGLAVTL 116 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~G-RR~~lli~~ll~ai~~il~~~a~s---~~~lii~R~l~G~g~G~~~~~ 116 (560)
+.+..+...++..+-..+-.|+.|.++|+.| ||+.+-+...+..++.+++.++++ ++..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4467788888888888899999999999999 556777777777888888888765 445555567788888888888
Q ss_pred HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh-c---------------cccchhHHHHHHHHHHHHHHHh
Q 008603 117 VPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL-M---------------TAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 117 ~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~-~---------------~~~~Wr~~f~i~ai~~ll~~il 180 (560)
..+++.+..+++..++..++-...+.+|..+..+....... . +...-|..+.+.++..++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 89999999999999999998888888888776544433321 1 3446788898888888887777
Q ss_pred hheeccCCh
Q 008603 181 TIFYLPESP 189 (560)
Q Consensus 181 ~~~~lpEsP 189 (560)
.++..++.+
T Consensus 216 m~~~v~~~~ 224 (438)
T COG2270 216 MILNVHDAE 224 (438)
T ss_pred HHhcccccc
Confidence 677777765
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00027 Score=77.54 Aligned_cols=128 Identities=14% Similarity=0.215 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhh--hHHHHH
Q 008603 23 ATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLL 100 (560)
Q Consensus 23 ~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~--s~~~li 100 (560)
...+....++.+...- ++...+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+ +...++
T Consensus 245 ~~~~~~~~y~~~y~~g--~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (460)
T PRK11462 245 CVRGGAMMYYVTWILG--TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMF 322 (460)
T ss_pred HHHHhHhhhhhhhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 3333444444444322 334456677788888999999999999999999887765554444333333322 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-------CcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAP-------PEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p-------~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
+.-++.|++.+...+..+.+++|... .+.-|...+...+...+|..++..+.
T Consensus 323 ~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 323 VFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788887777777778887766 23335545555566777776665444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.3e-05 Score=69.79 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008603 48 IVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPP 127 (560)
Q Consensus 48 i~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~ 127 (560)
-.++.+....++.++.+.+.+++|.|+.++++.+.+++-.... +-++.+.++.+-.+.|++.+..++..-.|+.+...+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3455556677788888999999999999999999988766554 456788899999999999999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 128 EIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 128 ~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
+.|++..+++-.....+.++|.+..+..
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888788888876655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=77.13 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=94.3
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----Ch-HHHHHHHHHHHHHHHHHHhh-----h-----
Q 008603 31 YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG-----RR-PMLIVSSVLYFIGGLVMLWS-----P----- 94 (560)
Q Consensus 31 ~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G-----RR-~~lli~~ll~ai~~il~~~a-----~----- 94 (560)
.+..|+++ .....+...+...+.+. .++..|..||+.+ || +.+..+.++.+.+..++.++ .
T Consensus 5 VMIvEL~v--pA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 5 VMIVELGV--PAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred hHHHHhcc--HHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 45678998 77899999988888765 6999999999988 77 55666666666665555441 2
Q ss_pred ---h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 95 ---N---VYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 95 ---s---~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
. .....+..++.|++.+...++..++++|..|+++|+++.++...+--+|++++....
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 134455677899999999999999999999999999999999999999999885443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=85.95 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHH----HHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVA----MSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG 87 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s----~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~ 87 (560)
.+-.|..+.......+..++....++.+.+ ...+.... ...+..++.+++.|.++||+|||..+.+..+...+..
T Consensus 28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~-~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~ 106 (463)
T KOG2816|consen 28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQ-LENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPA 106 (463)
T ss_pred HHHHHHHHhcCcchhhhhhhhhcccccCcc-chhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhH
Confidence 333444444444445555665555554221 22233333 3367788999999999999999999999999988888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 88 LVMLWSPNVYVLLLARLLDGFG--IGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 88 il~~~a~s~~~lii~R~l~G~g--~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
+++.+.. +|.++ +.++. .+.....+.+|++++...+.|....++.......+..+++.. +.......+.-.
T Consensus 107 ~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~--~~~~~~~~~~a~ 179 (463)
T KOG2816|consen 107 LCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPAL--GGYLVKFLGIAL 179 (463)
T ss_pred HHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHhcCchH
Confidence 8887765 33332 33332 333457778899999999999999999999888888888444 444455577888
Q ss_pred HHHHHHHHHHHHHHhhheeccCCh
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
.|.+..+..++..+...+++||+-
T Consensus 180 ~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 180 VFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999983
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00027 Score=75.00 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=87.9
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH-HHHHHHHh--hhhHHHHHHHHHHHH
Q 008603 31 YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYF-IGGLVMLW--SPNVYVLLLARLLDG 107 (560)
Q Consensus 31 ~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~a-i~~il~~~--a~s~~~lii~R~l~G 107 (560)
++.+.+|. ++.+.+++.....++.+++.++.+++.||++|+.......++.. +......+ ..+.+.+++..++.|
T Consensus 233 ~~~~~~g~--~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (394)
T PRK11652 233 LMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFF 310 (394)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45556888 77889999888889999999999999999984433322222222 11111122 235667778889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
++.+...+....++.|.+| +.+|+..++.+....+|..+++.+.
T Consensus 311 ~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 311 FGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5789999999988899998885544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00018 Score=77.74 Aligned_cols=146 Identities=5% Similarity=-0.093 Sum_probs=97.9
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008603 27 GAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLD 106 (560)
Q Consensus 27 ~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~ 106 (560)
..++.+.++.+...+....+...+.+..+..++++++++++||+++|+++.++.++.++..++..+.++... ..+-++.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 334433344332224455555666666788999999999999999999999999988888888888776544 4566778
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccc-----c-chhHHHHHHHHHHHHH
Q 008603 107 GFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTA-----P-SWRLMLGVLFIPSLIY 177 (560)
Q Consensus 107 G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~-----~-~Wr~~f~i~ai~~ll~ 177 (560)
|++.+..+|+...+..+..+++.+.....+ .+. .+|..+.+.+... ..+. . +.+..|.++.++-+..
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l-~~~-~~Gga~~p~l~G~--~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGL-VMA-IIGGGIVPPLQGF--IIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHH-HhccchHHHHHHH--HHHHhcccccCccchHHHHHHHHHHHH
Confidence 888888889999999999987664333333 233 2666666544433 3332 1 4677777765554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=65.69 Aligned_cols=81 Identities=10% Similarity=0.112 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHH
Q 008603 18 QGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVY 97 (560)
Q Consensus 18 ~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~ 97 (560)
.|+.++.++|++|.++++.++ +.++.|++.+..++|+.+|.+....+.++..+++.+..+.++.+++.+.|++.++++
T Consensus 4 mGigRFayTplLP~M~~~~~l--s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGL--SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 577888999999999999999 889999999999999999999999999998889999999999999999999988876
Q ss_pred HHH
Q 008603 98 VLL 100 (560)
Q Consensus 98 ~li 100 (560)
.+.
T Consensus 82 ~w~ 84 (85)
T PF06779_consen 82 LWS 84 (85)
T ss_pred HHh
Confidence 543
|
Note that many members are hypothetical proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.6e-05 Score=84.87 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhhh--------
Q 008603 24 TIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVLYFIGGLVMLWSP-------- 94 (560)
Q Consensus 24 ~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll~ai~~il~~~a~-------- 94 (560)
+.+.++.++.+.++. +.+....+...+....-+..+++|.++|+ +||++.++++.++..++.++++++.
T Consensus 6 m~aiLvlYl~~~lg~--~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~ 83 (654)
T TIGR00926 6 MRTILVLYFLNFLGF--SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPL 83 (654)
T ss_pred cHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence 344566777888898 66777778887777778888999999996 6999999999999999998887642
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---hhhHhhHHHHHHHHHHHHHHHHHHHHHhc-----cccchhHH
Q 008603 95 NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI---RGLLNTLPQFTGCVGMFLAYCMVFGMSLM-----TAPSWRLM 166 (560)
Q Consensus 95 s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~---RG~~~~l~~~~~~lG~~lg~li~~~l~~~-----~~~~Wr~~ 166 (560)
....++++-.+..+|.|.+-+...+...|.++++. |-....++....++|.+++..+....... ...+|...
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a 163 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA 163 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence 12345667778888999998999999999998643 55667777778888888875555433211 23479999
Q ss_pred HHHHHHHHHHHHHhh
Q 008603 167 LGVLFIPSLIYFVLT 181 (560)
Q Consensus 167 f~i~ai~~ll~~il~ 181 (560)
|.++++..++.+++.
T Consensus 164 F~i~~i~m~ia~lvf 178 (654)
T TIGR00926 164 FGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888876543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00027 Score=77.17 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q 008603 14 GNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS 93 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a 93 (560)
.+++........+....|+. +++++.+.....+.......+.+++.++...+++|+|+|+++.++.++.+++.+++.+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444555433 23444467777888888888888889999999999999999999999999999998886
Q ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------cchhhHhhHHHHHHHHHHHHHH
Q 008603 94 P--NVYVLLLARLLDGFGIGLAVTLVPIYISETAPP-------EIRGLLNTLPQFTGCVGMFLAY 149 (560)
Q Consensus 94 ~--s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~-------~~RG~~~~l~~~~~~lG~~lg~ 149 (560)
+ +...+++..++.+++.+...+..+++++|...- +.-|...+...+..=+|..++.
T Consensus 323 ~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 323 PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 6 788888899999999999999999999887542 3336677777776666666654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-08 Score=110.06 Aligned_cols=164 Identities=21% Similarity=0.225 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH--h---hhh-----
Q 008603 26 AGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML--W---SPN----- 95 (560)
Q Consensus 26 ~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~--~---a~s----- 95 (560)
....+.+.++.+.+. . -+......+..+++.+++..+.||+|||+.++++.++.+++.+.++ . .++
T Consensus 273 ~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T PF00083_consen 273 FYYSPSIFENAGISN--S--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS 348 (451)
T ss_pred ccccccccccccccc--c--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334566677777633 3 2222333344556677777999999999999999888887777664 1 111
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 008603 96 VYVLLLAR-LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPS 174 (560)
Q Consensus 96 ~~~lii~R-~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ 174 (560)
...+.... +...++.+ ..+..+.+.+|.+|.+.|.+..++......++.++++.... ...+..+-...|.+.+++.
T Consensus 349 ~~~i~~~~l~~~~~~~g-~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~i~~~~~ 425 (451)
T PF00083_consen 349 ILSIVFLALFFAFFSLG-WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFP--YLFNNLGGWGVFLIFAGVC 425 (451)
T ss_pred cccceeeeecccccccc-ccccccccccccccccccccccccccccccccccccccccc--cccccccccccchhhHHHH
Confidence 22222122 11222222 23556688899999999999999998888888777643322 2222222234566666777
Q ss_pred HHHHHhhheeccCChhhhhhhcchHHHH
Q 008603 175 LIYFVLTIFYLPESPRWLVSKGRMLEAK 202 (560)
Q Consensus 175 ll~~il~~~~lpEsP~~L~~~gr~~ea~ 202 (560)
++..++.++++||| +++..++.
T Consensus 426 ~i~~i~~~~~lpET------~g~~l~ei 447 (451)
T PF00083_consen 426 LIAIIFVYFFLPET------KGKTLEEI 447 (451)
T ss_pred HHHHhheeEEEeeC------CCCCHHHH
Confidence 77777788999999 67665543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.2e-05 Score=83.33 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---------hHHHH
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGR---------RPMLI 77 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GR---------R~~ll 77 (560)
++++.++.+...+....+...+| |+++-+|+ +-.+.|+..+...+...+..+++|.++||+=+ |..-.
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f--~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF--DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 45566666666676667766676 67788999 66999999999999999999999999998744 33334
Q ss_pred HHHHHHHHHHHHHHhhhh--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHH
Q 008603 78 VSSVLYFIGGLVMLWSPN--V----YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCM 151 (560)
Q Consensus 78 i~~ll~ai~~il~~~a~s--~----~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li 151 (560)
++....+++.+++++.+. . ..+.+.-.+.|+..+++... .-...++.-+.++++.+....+..++++.+
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~-----~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKN-----HQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhh-----hhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555542 1 22222223333333333221 112156778999999999999999998665
Q ss_pred HHHHHhc-cccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 152 VFGMSLM-TAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 152 ~~~l~~~-~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
....... +...||.+|++.+++.++..++..++....
T Consensus 413 vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e 450 (466)
T KOG2532|consen 413 VGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGE 450 (466)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCc
Confidence 5333321 234899999999999998876655554433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.3e-05 Score=84.07 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=113.0
Q ss_pred HHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHH
Q 008603 34 REFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW----------SPNVYVLLLAR 103 (560)
Q Consensus 34 ~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~----------a~s~~~lii~R 103 (560)
+.+|. ++...|++.....++.+++..+.+.+.+|++.|+++.++.++.+++.+...+ .++.+.++..-
T Consensus 281 ~~lG~--s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPG--GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 45677 8899999999999999999999999999999999999999998887755431 13344555667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc-----cccchhH-HHHHHHHHHHHH
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM-----TAPSWRL-MLGVLFIPSLIY 177 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~-----~~~~Wr~-~f~i~ai~~ll~ 177 (560)
++.+++.+........++++..|++.+|+..++.+...++|..++......+... ++.+.++ ...++.++.++.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 8889999999899999999999999999999999999999999986544333211 1122222 234444444444
Q ss_pred HHhhheeccC
Q 008603 178 FVLTIFYLPE 187 (560)
Q Consensus 178 ~il~~~~lpE 187 (560)
..+ .+++|+
T Consensus 439 l~~-~~llP~ 447 (468)
T TIGR00788 439 LPL-LHLLPR 447 (468)
T ss_pred HHH-HHhCCC
Confidence 444 347786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=78.74 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCChH-------HHHHHHHHHHHHHHHHH-----hh-----hhHHHHHHHHHHHHHH
Q 008603 47 LIVAMSLIGATCITTCSGAIADWLGRRP-------MLIVSSVLYFIGGLVML-----WS-----PNVYVLLLARLLDGFG 109 (560)
Q Consensus 47 li~s~~~lG~iig~~~~G~LsDr~GRR~-------~lli~~ll~ai~~il~~-----~a-----~s~~~lii~R~l~G~g 109 (560)
.+.+...+..++..++.+.+.||++||+ -+.+++++.+++.+.++ ++ .+++.++..-++.|+|
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~G 392 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG 392 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 3444444566788888999999999886 36667777666654321 21 3567788889999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHHhh
Q 008603 110 IGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM--------TAPSWRLMLGVLFIPSLIYFVLT 181 (560)
Q Consensus 110 ~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~--------~~~~Wr~~f~i~ai~~ll~~il~ 181 (560)
.+...+....++.+.+|++.+|.++++......+|..++..+.-..... ......+.|...++..++..++.
T Consensus 393 e~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~ 472 (489)
T PRK10207 393 ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVM 472 (489)
T ss_pred HHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888888875444222110 01134567777777666655543
Q ss_pred h
Q 008603 182 I 182 (560)
Q Consensus 182 ~ 182 (560)
+
T Consensus 473 ~ 473 (489)
T PRK10207 473 A 473 (489)
T ss_pred H
Confidence 3
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.02 E-value=7e-07 Score=99.76 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
+..++..+++....+.....++.+.+.|++ +.++.|++.+.+-++.++..++..++..|..|-+.+-++.++++++.+
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l--~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGL--SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence 344555556666666677788899999999 779999999999999999999999999998788999999999999998
Q ss_pred HHHhh------------h--------------------------------------hHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 89 VMLWS------------P--------------------------------------NVYVLLLARLLDGFGIGLAVTLVP 118 (560)
Q Consensus 89 l~~~a------------~--------------------------------------s~~~lii~R~l~G~g~G~~~~~~~ 118 (560)
++++- . -+..++++.++.|+|....++...
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 87640 0 036778889999999999999999
Q ss_pred HHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh----------------cccc----chhHHHHHHHHHHHHHH
Q 008603 119 IYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL----------------MTAP----SWRLMLGVLFIPSLIYF 178 (560)
Q Consensus 119 ~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~----------------~~~~----~Wr~~f~i~ai~~ll~~ 178 (560)
+|+-|..+++.-+...++......+|..+|+++...... .+.+ .|-.-|.+.+++.++..
T Consensus 164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888766543321 0112 35556666777766665
Q ss_pred HhhheeccCChh
Q 008603 179 VLTIFYLPESPR 190 (560)
Q Consensus 179 il~~~~lpEsP~ 190 (560)
+...+|-++.|.
T Consensus 244 ipl~~FPk~lp~ 255 (539)
T PF03137_consen 244 IPLFFFPKKLPG 255 (539)
T ss_dssp ------------
T ss_pred HHHHcCCccCCC
Confidence 554444334443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00066 Score=71.38 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008603 22 NATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLYFIGGLVMLWSPNVYVLL 100 (560)
Q Consensus 22 ~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ai~~il~~~a~s~~~li 100 (560)
.++....+|.|..|-|+ ++.+.|...+...+..+..++....+.+|. .+|+..+...+++.++.+.+.+.+.-..+.
T Consensus 224 ~Y~~~~WLP~ili~~G~--sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l 301 (395)
T COG2807 224 YYIVIGWLPAILIDRGL--SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL 301 (395)
T ss_pred HHHHHHHHHHHHHHcCC--CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34455668999999999 889999999999999999999999999965 688888888888888888888876543333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 101 LARLLDGFGIGLAVTLVPIYISETAPP-EIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 101 i~R~l~G~g~G~~~~~~~~~isE~~p~-~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
- -++.|++.|..++.+..++...++. ++-+...++.|..+.+=..++|.+...+.. ..-+|+..+...+...++..+
T Consensus 302 w-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD-a~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 302 W-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD-ATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred H-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH-hcCChHHHHHHHHHHHHHHHH
Confidence 3 4899999999999999999887764 555667777776666666666544432222 244899998888888888776
Q ss_pred hhheecc
Q 008603 180 LTIFYLP 186 (560)
Q Consensus 180 l~~~~lp 186 (560)
..+..-|
T Consensus 380 ~Gl~a~r 386 (395)
T COG2807 380 FGLRAGR 386 (395)
T ss_pred HHhhcch
Confidence 6555443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=73.14 Aligned_cols=142 Identities=8% Similarity=-0.002 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHHHHhhhh---------------------HHHHHHHHHH
Q 008603 48 IVAMSLIGATCITTCSGAIADWLGR-RPMLIVSSVLYFIGGLVMLWSPN---------------------VYVLLLARLL 105 (560)
Q Consensus 48 i~s~~~lG~iig~~~~G~LsDr~GR-R~~lli~~ll~ai~~il~~~a~s---------------------~~~lii~R~l 105 (560)
....+.+...+.+++..++++++|+ |+...++.++.+++.+.+.+..+ .+..++.-.+
T Consensus 310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 3344444555777788899999994 77778888888888777765443 3677778889
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--cchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhe
Q 008603 106 DGFGIGLAVTLVPIYISETAPP--EIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 106 ~G~g~G~~~~~~~~~isE~~p~--~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
.|+..+.....-++++++..|+ +..|..+++.+.+..+.+++..+...........+-..++.+.++..++..++.++
T Consensus 390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 45599999999999999888765333322222224566888999999999998888
Q ss_pred eccCCh
Q 008603 184 YLPESP 189 (560)
Q Consensus 184 ~lpEsP 189 (560)
.+|.+|
T Consensus 470 ~~~~~~ 475 (477)
T TIGR01301 470 LLPRPR 475 (477)
T ss_pred hCCCCC
Confidence 898764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00053 Score=76.06 Aligned_cols=132 Identities=27% Similarity=0.310 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q 008603 55 GATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVY---VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRG 131 (560)
Q Consensus 55 G~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~---~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG 131 (560)
-...+....+.+.|++|||..+..+.++..++.++.++.+... ...+...+..++.+.....+..+.+|.+|...|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4455556668999999999999999999999999998876443 3566666666777777777799999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 132 LLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 132 ~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
.+.+....+..+|.++++.+...... ....+.... .+....+..++..+++||+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLIL--FGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHH--HHHHHHHHHHHHHhcCcccC
Confidence 99999999999999998766643332 222232222 34455555555668899984
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.2e-05 Score=83.58 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHH
Q 008603 18 QGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVY 97 (560)
Q Consensus 18 ~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~ 97 (560)
.|.....+...+-.-.++++. .+...|........|-++.-++.+++..++|+-+++..++...++=.+..++..|.|
T Consensus 383 mG~g~~lv~tFLfWHled~~~--~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W 460 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHLEDLGG--IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW 460 (618)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch
Confidence 333333333334344677776 778889888888899999999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHH-HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 008603 98 VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTG-CVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLI 176 (560)
Q Consensus 98 ~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~-~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll 176 (560)
+.+..-+++|+..+..+.++-.|++..+|++.|..+.++.+... .+|-.+|.+++ .......+-|..|.++++.+++
T Consensus 461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIG--G~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIG--GFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhh--hhhheeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987764 45555553333 3334456778888888887777
Q ss_pred HHHh
Q 008603 177 YFVL 180 (560)
Q Consensus 177 ~~il 180 (560)
.+++
T Consensus 539 ~l~~ 542 (618)
T KOG3762|consen 539 TLAL 542 (618)
T ss_pred HHHH
Confidence 6554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=78.37 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---C--ChHHHHHHHHHHHHHHHHHHhh----hh
Q 008603 25 IAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL---G--RRPMLIVSSVLYFIGGLVMLWS----PN 95 (560)
Q Consensus 25 ~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~---G--RR~~lli~~ll~ai~~il~~~a----~s 95 (560)
.....|++++++|+ ++++.....+...+.. ...++.|.++|.+ | ||+-++++.++.+++.+.++.. .+
T Consensus 9 ~~~~~~~l~~~l~l--s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 9 RLAIYPFLKDDLGL--SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 34567889999999 8898888888877764 4678899999975 4 5666777777776666666553 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 008603 96 VYVLLLARLLDGFGIGLAVTLVPIYISETAP--PEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIP 173 (560)
Q Consensus 96 ~~~lii~R~l~G~g~G~~~~~~~~~isE~~p--~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~ 173 (560)
.....+.-++..++.......+-.+++|... ++.||...+....+..+|.+++..+. ....+..+++..|.+.+++
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~--G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLS--GPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh--hhhhhcCCCeEEehHHHHH
Confidence 6666777788889999999999999999983 33478888888888889998885444 4445566888899888888
Q ss_pred HHHHHHhhheeccC
Q 008603 174 SLIYFVLTIFYLPE 187 (560)
Q Consensus 174 ~ll~~il~~~~lpE 187 (560)
.++..+..+++.+|
T Consensus 164 ~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 164 PLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHhhhh
Confidence 88776666666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00061 Score=73.34 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=123.1
Q ss_pred HHHHHHHHHH-cCCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008603 26 AGAVLYIKRE-FHLETEPTIE-GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLAR 103 (560)
Q Consensus 26 ~~~lp~i~~~-~gls~s~~~~-gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R 103 (560)
..+.|++.+. .|+ +..+. .-+.-...-.++...++...+.|.++.|++++++.+...+..+++.+.++...+-+.-
T Consensus 24 Pfl~~yL~~~~kn~--T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 24 PFLTPYLTGPDKNF--TEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred ccchHHHcCCccCC--CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 3356676665 677 54544 3455556667778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhe
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
++.|++.+.- .+.+.|+-...|+++--++.+.......+|.+++.+++-.+......+++..+++......+.+++ .+
T Consensus 102 ~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~-~~ 179 (412)
T PF01770_consen 102 FFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI-AL 179 (412)
T ss_pred HHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HH
Confidence 9999998875 777889988899988888888888877777777766665555556667777776666655554444 45
Q ss_pred eccCCh
Q 008603 184 YLPESP 189 (560)
Q Consensus 184 ~lpEsP 189 (560)
++|..+
T Consensus 180 fLP~~~ 185 (412)
T PF01770_consen 180 FLPMPK 185 (412)
T ss_pred HcCCCC
Confidence 566544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.3e-06 Score=85.45 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVL 82 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll 82 (560)
+.+.++.+|+-.|-..+-.-....+-.+++.+.++ +.++..++.+.+..-.++-.+++|++.|| +|-|...++-++.
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni--~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f 119 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNI--EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF 119 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhccccc--ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence 34444445544444444344444556677888888 55788899999999999999999999996 6888777776777
Q ss_pred HHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 83 YFIGGLVML---WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 83 ~ai~~il~~---~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
..++-++.+ +.+.+|+++++||+.|+|.-...++...|+..++..|+-+.++++......+|..+...++..+
T Consensus 120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 777777665 4678999999999999998877788889999999999999999998888888887664444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0038 Score=66.80 Aligned_cols=150 Identities=14% Similarity=0.084 Sum_probs=120.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHH
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD-WLGRRPMLIVSSVLYFIGGLVMLW---SPNVYVLLLARL 104 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD-r~GRR~~lli~~ll~ai~~il~~~---a~s~~~lii~R~ 104 (560)
=||=.+-||+ +..+...++.....|..++..+.|.+.. |.++++...+++.+.+++..+..+ ..+.+.+...-+
T Consensus 232 EPygg~Vfgm--sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 232 EPYGGEVFGM--SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF 309 (403)
T ss_pred CCchhHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 4677888999 7799999999999999999999998877 678888888888888877766554 457889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH-----h---ccccchhHHHHHHHHHHHH
Q 008603 105 LDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS-----L---MTAPSWRLMLGVLFIPSLI 176 (560)
Q Consensus 105 l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~-----~---~~~~~Wr~~f~i~ai~~ll 176 (560)
+.|++.|.+.+..-..+.++.++++-|..++.......+...++.+...... . .+..+|-.+|.+.++.-++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888777776644443322 1 1334677788887777666
Q ss_pred HHHh
Q 008603 177 YFVL 180 (560)
Q Consensus 177 ~~il 180 (560)
..++
T Consensus 390 a~~l 393 (403)
T PF03209_consen 390 ALVL 393 (403)
T ss_pred HHHH
Confidence 5443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=58.08 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
+...+|+.+...+...|.+|.+.++.|+ ++.+.|++.++..+..++++++.|.++||++|++.++....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl--~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGL--SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4455666667777788888888888999 8899999999999999999999999999999988877665543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0048 Score=66.50 Aligned_cols=147 Identities=10% Similarity=0.032 Sum_probs=84.7
Q ss_pred HHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH-----hhhhHH
Q 008603 24 TIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML-----WSPNVY 97 (560)
Q Consensus 24 ~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~-----~a~s~~ 97 (560)
......| ++++.+|. ++.+.++.......+.+++..+.+.+.++..+++.+.....+..++.+++. ..+++.
T Consensus 236 ~~~~~~P~~l~~~~g~--s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~ 313 (413)
T PRK15403 236 SWVAVSPVILIDAGGM--TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWL 313 (413)
T ss_pred HHHHhChHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence 3333456 45566788 789999998888888888888888876554444433322222223332222 123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 008603 98 VLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLI 176 (560)
Q Consensus 98 ~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll 176 (560)
.+++..++.+++.+...+......- .-....+|++.++.+.....+..++....- +.... +-+..|...+++..+
T Consensus 314 ~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g--~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 314 WSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGR--WLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHc-CCchHHHHHHHHHHH
Confidence 4567788888888888776664322 222334788888887777666666644332 22111 334455444444333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00045 Score=76.48 Aligned_cols=125 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChHHHHHHHHH
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADW----LGRRPMLIVSSVL 82 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr----~GRR~~lli~~ll 82 (560)
++..+++.++....+..+...+|.+.++ .+. +..+..++.....++.+++.+++|.++|| ..+|........+
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~--s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGY--SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCc--ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566777788888888888888877776 456 77899999999999999999999999999 6677666666655
Q ss_pred HHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 008603 83 YFIGG-LVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLN 134 (560)
Q Consensus 83 ~ai~~-il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~ 134 (560)
+.+.. +.+.+..+......+-+....+.+...+++..+.++...++.|....
T Consensus 353 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~ 405 (495)
T KOG2533|consen 353 YAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT 405 (495)
T ss_pred HHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence 55544 44444443444444445555666777788888888888776654433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.006 Score=65.10 Aligned_cols=157 Identities=11% Similarity=0.038 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 008603 13 IGNLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML 91 (560)
Q Consensus 13 l~~fl~g~~~~~~~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~ 91 (560)
++.|++--...+....++.+..+ .|+ ++.+.....+.+..+.++|++++.++..|+-..+.+.+.++...+-++..+
T Consensus 243 l~~FlYVG~Eva~gsfl~~y~~~~~g~--~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~ 320 (422)
T COG0738 243 LAIFLYVGAEVAIGSFLVSYLEELLGL--NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA 320 (422)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 34444333344445555554555 777 789999999999999999999999999999999999999988888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Q 008603 92 WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLF 171 (560)
Q Consensus 92 ~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~a 171 (560)
++++...+ .+-+++|+..+..+|...+...+..| +.-....++.-+. .+|..+.|.+. ....+..+-...+.+..
T Consensus 321 l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~ma-ivGGAiiP~l~--G~i~d~~g~~~~~~~~p 395 (422)
T COG0738 321 LIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMA-IVGGAIIPPLQ--GVIADMFGIQLTFLIVP 395 (422)
T ss_pred HhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeh-eecchHHHHHH--HHHHHhhhhHHHHHHHH
Confidence 88885544 45678899999999999999999999 4444444444343 34444443222 34445555555555333
Q ss_pred HHHHH
Q 008603 172 IPSLI 176 (560)
Q Consensus 172 i~~ll 176 (560)
.++.+
T Consensus 396 llc~l 400 (422)
T COG0738 396 LLCYL 400 (422)
T ss_pred HHHHH
Confidence 33333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00027 Score=75.00 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=118.1
Q ss_pred HHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008603 23 ATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG--RRPMLIVSSVLYFIGGLVMLWSPNVYVL 99 (560)
Q Consensus 23 ~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G--RR~~lli~~ll~ai~~il~~~a~s~~~l 99 (560)
...-|.++. +.+.+.. +..+.|++.--..+.+.+++.+.|.++||++ |......+.++..++.....+++++..+
T Consensus 287 afLePtlslwm~e~m~~--p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L 364 (464)
T KOG3764|consen 287 AFLEPTLSLWMLETMFT--PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL 364 (464)
T ss_pred HHhCcccHHHHHHhccC--CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence 334445554 5666764 4568888888888999999999999999999 6555556666666666777789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC---c---chhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPP---E---IRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIP 173 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~---~---~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~ 173 (560)
++-++..+++.+...+.....+.+.... + .-|...++.+.++++|..++ +.++.......+++|.-.+.++.
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~G--P~~gg~iv~~iGF~wl~~iig~~ 442 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIG--PTFGGSLVEAIGFEWLMTIIGIL 442 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcc--ccccchheeehhHHHHHHHHHHH
Confidence 9999999999888766655544444433 3 55788889999999999999 55556677788999998888888
Q ss_pred HHHHHHhh
Q 008603 174 SLIYFVLT 181 (560)
Q Consensus 174 ~ll~~il~ 181 (560)
.+++..+.
T Consensus 443 n~iyapvl 450 (464)
T KOG3764|consen 443 NLIYAPVL 450 (464)
T ss_pred HHHHHHHH
Confidence 88876543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0036 Score=70.70 Aligned_cols=145 Identities=19% Similarity=0.096 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH-HHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKR-EFHLETE-PTIEGLIVAMSLIGATCITTCSGAIADWLGRRP-MLIVSSVLYFIG 86 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~-~~gls~s-~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~-~lli~~ll~ai~ 86 (560)
+..+..|+.+........+.|.... -|+-+.. ....++......++..++.++.|.+.-+++|-| .++++.+++.++
T Consensus 314 ~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~ 393 (599)
T PF06609_consen 314 ALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAF 393 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 3345556666656665566665433 3444211 135678888888899999999999998887554 445676666665
Q ss_pred HHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 87 GLVMLW--SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 87 ~il~~~--a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
+-+++. .+|....+..-++.|++.|.......+...-..|.+.-|.+.++......+|..+++.+...
T Consensus 394 ~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 394 CGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555544 23555556777899999999888887777778899999999999999888888887665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00048 Score=78.57 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 008603 7 VAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIG 86 (560)
Q Consensus 7 i~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~ 86 (560)
.++++++..+.+++....+...+..+.+.|++ +.++.|++.+.+-+|..+...+..+..-|.-|-+++-+++++++++
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i--~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKI--SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 44556667777777777777788899999999 6688999999999999999999999999988889999999999999
Q ss_pred HHHHHhh--------------------h--------------------------------hHHHHHHHHHHHHHHHHHHH
Q 008603 87 GLVMLWS--------------------P--------------------------------NVYVLLLARLLDGFGIGLAV 114 (560)
Q Consensus 87 ~il~~~a--------------------~--------------------------------s~~~lii~R~l~G~g~G~~~ 114 (560)
.+++++- + -+..++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 9988651 0 02367778899999999999
Q ss_pred HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh--ccc-----------c----chhHHHHHHHHHHHHH
Q 008603 115 TLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL--MTA-----------P----SWRLMLGVLFIPSLIY 177 (560)
Q Consensus 115 ~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~--~~~-----------~----~Wr~~f~i~ai~~ll~ 177 (560)
+...+|+-|....++-....++...+..+|.++|++++-.+.- .+. + .|..-|.+++.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776655431 111 1 4777888888888887
Q ss_pred HHhhheeccCChh
Q 008603 178 FVLTIFYLPESPR 190 (560)
Q Consensus 178 ~il~~~~lpEsP~ 190 (560)
.+..++|-++.|+
T Consensus 336 a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 336 AVPLFFFPKELPK 348 (735)
T ss_pred HHHHHhCcccCcc
Confidence 7765555445553
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0032 Score=71.17 Aligned_cols=165 Identities=11% Similarity=0.148 Sum_probs=111.1
Q ss_pred HHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--------ChHHHHHHHHHHHHHHHHHHhhhhH
Q 008603 26 AGAVLYIKREF-HLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG--------RRPMLIVSSVLYFIGGLVMLWSPNV 96 (560)
Q Consensus 26 ~~~lp~i~~~~-gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G--------RR~~lli~~ll~ai~~il~~~a~s~ 96 (560)
..-+-+|.+.+ |.+.+.+...+.++...++..+|++.+|.++...- +|+..+....++.++.++++++-..
T Consensus 373 ~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~ 452 (591)
T PTZ00207 373 IFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPK 452 (591)
T ss_pred eecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCc
Confidence 33456777888 55222211223778888899999999998883222 2233333333366666666665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHh-ccc-----------cchh
Q 008603 97 YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSL-MTA-----------PSWR 164 (560)
Q Consensus 97 ~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~-~~~-----------~~Wr 164 (560)
..+.+.-++.|++.|...++....++|+|. |+-|+...+......+|..+-.....+... .+. .=.|
T Consensus 453 ~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~ 531 (591)
T PTZ00207 453 AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVV 531 (591)
T ss_pred cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeH
Confidence 689999999999999999999999999999 999998888888888887764333333221 110 0167
Q ss_pred HHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 165 LMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 165 ~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
..|.+.+.++++.+++...+.-++.++
T Consensus 532 ~~~~v~~~~~~~g~~~s~~l~~R~r~~ 558 (591)
T PTZ00207 532 MPLAFLLGLSFLAFITSTYVHLQYRRL 558 (591)
T ss_pred hHHHHHHHHHHHHHHHHhheeeehHHH
Confidence 899999999988877665554455433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0047 Score=67.58 Aligned_cols=106 Identities=22% Similarity=0.228 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008603 49 VAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPE 128 (560)
Q Consensus 49 ~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~ 128 (560)
.++.+....+..++.+.+.|++|+|..+.++...+....+...+ +|-+.+++.-.+.|+|.+..++..-.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 56667778889999999999999999999999998887776665 45667788899999999998899999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHHHHH
Q 008603 129 IRGLLNTLPQFTGCVGMFLAYCMVFGM 155 (560)
Q Consensus 129 ~RG~~~~l~~~~~~lG~~lg~li~~~l 155 (560)
.+.+..++.-.....+.++|....+..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 999999998888888888875554433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0016 Score=70.33 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCh-HHHHHHHHHHHHHHHHHHhhhhH----
Q 008603 26 AGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD----WLGRR-PMLIVSSVLYFIGGLVMLWSPNV---- 96 (560)
Q Consensus 26 ~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD----r~GRR-~~lli~~ll~ai~~il~~~a~s~---- 96 (560)
..++|.+...+|+ .....+.+-...-+..++.+++.|..+| |+||| +.+..+.++.+++.+++.++.++
T Consensus 52 lsy~tPyl~~lGv--phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~l 129 (498)
T KOG0637|consen 52 LSYLTPYLQSLGV--PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLL 129 (498)
T ss_pred hccccHHHHHcCC--CcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHh
Confidence 3356666778998 5577777776777777889999999999 58966 56677778888888888876543
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-HhhHHHHHHHHHHHHHHHHH
Q 008603 97 -------------YVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGL-LNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 97 -------------~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~-~~~l~~~~~~lG~~lg~li~ 152 (560)
..++++-.+.=++.......+-++++|....+.+-+ +++++..+..+|..+++...
T Consensus 130 gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 130 GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 344444445556666777888999999998877777 99999999999999997766
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.094 Score=58.31 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC--h----HH-HHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHH
Q 008603 46 GLIVAMSLIGATCITTCSGAIADWLGR--R----PM-LIVSSVLYFIGGLVMLWS---------PNVYVLLLARLLDGFG 109 (560)
Q Consensus 46 gli~s~~~lG~iig~~~~G~LsDr~GR--R----~~-lli~~ll~ai~~il~~~a---------~s~~~lii~R~l~G~g 109 (560)
++..+...+..++.+|+.+++=.|..| | +. +.+++++.+++.+++.++ .+.+.+++..++..+|
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 445555555566677777777666633 2 11 566777777776666431 2567788899999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHhhHHHHH-HHHHHHHHHHHHHHHHhc----------cccchhHHHHHHHHHHHHH-
Q 008603 110 IGLAVTLVPIYISETAPPEIRGLLNTLPQFT-GCVGMFLAYCMVFGMSLM----------TAPSWRLMLGVLFIPSLIY- 177 (560)
Q Consensus 110 ~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~-~~lG~~lg~li~~~l~~~----------~~~~Wr~~f~i~ai~~ll~- 177 (560)
--...|+...++++.+|++.||+.++..... ..+|..++..+.-..... +...+...|...++.+++.
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 470 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACV 470 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998663 357766654333222100 0123556777777777665
Q ss_pred HHhhh
Q 008603 178 FVLTI 182 (560)
Q Consensus 178 ~il~~ 182 (560)
.++.+
T Consensus 471 ~~~~~ 475 (493)
T PRK15462 471 GVVLM 475 (493)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.23 Score=54.85 Aligned_cols=129 Identities=8% Similarity=0.067 Sum_probs=89.9
Q ss_pred HHHHHHHHcCCC---CChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh--h-------
Q 008603 28 AVLYIKREFHLE---TEPTIEGLIVAMSLIGATCI-TTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS--P------- 94 (560)
Q Consensus 28 ~lp~i~~~~gls---~s~~~~gli~s~~~lG~iig-~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a--~------- 94 (560)
++..++|.+..+ ...+...++-+...+...+. .++.+++++|++|++.+-+....+....++.++. |
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 366778888762 23355666666665554444 8899999999999998877666665555554442 1
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHH
Q 008603 95 ----------------------NVYVLLLARLLDGFGIGLAVT-LVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCM 151 (560)
Q Consensus 95 ----------------------s~~~lii~R~l~G~g~G~~~~-~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li 151 (560)
+.|...+..+...+-.....+ .-+.+++|+++.++-.+..+++....++|..+++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455555555554 678899999999999999999999999999998766
Q ss_pred HHHHH
Q 008603 152 VFGMS 156 (560)
Q Consensus 152 ~~~l~ 156 (560)
...+.
T Consensus 185 ~~~~~ 189 (472)
T TIGR00769 185 IKYFS 189 (472)
T ss_pred HHHHH
Confidence 54443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.046 Score=61.78 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhhhh-------
Q 008603 24 TIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLYFIGGLVMLWSPN------- 95 (560)
Q Consensus 24 ~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ai~~il~~~a~s------- 95 (560)
...+++.++..+++. ....+...+..+.-...+..++++.++|-| ||-+++.++.++..++.++..++..
T Consensus 56 ~~~nlv~ylt~~~~~--~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHA--SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred chhHHHHHHHHHhcc--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 346778899999998 446666666666666677778999999975 8999999999998888665544211
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---Ccc-hh--hHhhHHHHHHHHHHHHHHHH
Q 008603 96 ------------------VYVLLLARLLDGFGIGLAVTLVPIYISETAP---PEI-RG--LLNTLPQFTGCVGMFLAYCM 151 (560)
Q Consensus 96 ------------------~~~lii~R~l~G~g~G~~~~~~~~~isE~~p---~~~-RG--~~~~l~~~~~~lG~~lg~li 151 (560)
...+.....+..+|.|+.-+....+-+|-++ ++. +. ..+.++.+..++|..++ .
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a--~ 211 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLA--Q 211 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHH--H
Confidence 1345555667777888888888899999998 322 22 55666677778888887 3
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 152 VFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 152 ~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
...++..+..+|.+.|.++.+..++..++
T Consensus 212 t~~vyiq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 212 TVLVYIQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred HHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence 34455667789999998888877665443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.044 Score=60.38 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=101.6
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008603 31 YIKREFHLETEPTIEGLIVAMSLIGATCITTCSG-AIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFG 109 (560)
Q Consensus 31 ~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G-~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g 109 (560)
+.+..|+. ++.+.+...+...+...++..+.. .+...+|-|+++.+++....+..++.+++.+.|++....++.++.
T Consensus 267 yl~~~f~w--~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 267 YLKAKFGW--NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA 344 (463)
T ss_pred EEeeecCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence 45667788 778888777777777777777666 778888988899999999999999999999999999888888776
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 008603 110 IGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS 156 (560)
Q Consensus 110 ~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~ 156 (560)
.... +..-+.++-+..++++|++.++....-.+..++++.+...++
T Consensus 345 ~~~~-pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 345 GIVF-PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred cchh-HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 5554 788889999999999999999999998888888766554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.028 Score=59.71 Aligned_cols=105 Identities=15% Similarity=0.279 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh--h-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---chhhHhhHHHHHH
Q 008603 74 PMLIVSSVLYFIGGLVMLWS--P-------NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPE---IRGLLNTLPQFTG 141 (560)
Q Consensus 74 ~~lli~~ll~ai~~il~~~a--~-------s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~---~RG~~~~l~~~~~ 141 (560)
++++++.+++++|.++..++ + +...++++-++.++|.|+.=+...++++|.++++ +|....+++....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888885443 2 2357888899999999999999999999999876 3566777788889
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Q 008603 142 CVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 142 ~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il 180 (560)
++|..++..+. .+..+..+|.+.|+++++..++..+.
T Consensus 82 n~G~~~~~~~~--~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 82 NIGSLFSPTLV--PYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCC--CHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccc--hhhccccchhhhhhHHHHHHHHHHHH
Confidence 99999884433 44556789999999999888876554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.4 Score=52.74 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHh---hhCChHHHHHHHHHHHHHHHHHHhh------------------hhHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIAD---WLGRRPMLIVSSVLYFIGGLVMLWS------------------PNVYVL 99 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsD---r~GRR~~lli~~ll~ai~~il~~~a------------------~s~~~l 99 (560)
+....++......+|.+++..+.+.+++ ++||++.+.++.++..+..++.... +++...
T Consensus 277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~ 356 (461)
T KOG3098|consen 277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLA 356 (461)
T ss_pred chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHH
Confidence 3355566666677788888888888876 5799999999999988887776542 245677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLA 148 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg 148 (560)
.+.-++.|++-+...+..+.++...+ +++|..+.+++.+-..++..++
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999 7778888888877777666554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.25 Score=54.00 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---hhh-------
Q 008603 25 IAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML---WSP------- 94 (560)
Q Consensus 25 ~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~---~a~------- 94 (560)
..+....+...-|+ ++...|..-+...+..+.++++..++.+|+|..+.=+++...-..+..+.. +.+
T Consensus 277 f~~lmt~yl~~~G~--s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~ 354 (432)
T PF06963_consen 277 FGGLMTAYLKSQGY--SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSI 354 (432)
T ss_pred CcHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Confidence 34444444445599 889999999999999999999999999999988877776655433332222 221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 95 NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 95 s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
+...++.+-.+.=+|.=.+--+..-++.|..|+++||..++.-....++-.++.+.+...
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223333333333334444556677789999999999999999888888877777555543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.018 Score=58.40 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=69.9
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008603 31 YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGI 110 (560)
Q Consensus 31 ~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~ 110 (560)
++.+.++. .+.++|.+..+-+-..++...+.|.++|+.|||+.++.-++.+.++++ +-.++.+-.++++|.+-|++.
T Consensus 62 yLYstYgF--gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaT 138 (454)
T KOG4332|consen 62 YLYSTYGF--GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIAT 138 (454)
T ss_pred eeehhcCc--cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHH
Confidence 44566776 556777766666666677777888999999999998887777766543 456788999999999999999
Q ss_pred HHHHHHHHHH-HHhhc
Q 008603 111 GLAVTLVPIY-ISETA 125 (560)
Q Consensus 111 G~~~~~~~~~-isE~~ 125 (560)
...+..--.| ++|.-
T Consensus 139 sLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 139 SLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8877666554 66654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.15 Score=54.33 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=101.5
Q ss_pred HHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008603 34 REFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLG--RRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIG 111 (560)
Q Consensus 34 ~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~G--RR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G 111 (560)
..|+. ++.+.|-+.+...++..+.+....+..+|.. -+-.+..+..++....++...+.....+.++-.+-.+..+
T Consensus 290 ~rfg~--ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A 367 (451)
T KOG2615|consen 290 GRFGY--SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA 367 (451)
T ss_pred CccCC--ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence 55677 7899999998888888888888888888876 6667777888888888888888888889999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 112 LAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 112 ~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
...+....++....|.++||.++|+......++-.+||++.
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~ 408 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS 408 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence 99899999999999999999999999999999999997665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.55 Score=51.74 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCh-------HHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHH
Q 008603 47 LIVAMSLIGATCITTCSGAIADWLGRR-------PMLIVSSVLYFIGGLVMLWS----------PNVYVLLLARLLDGFG 109 (560)
Q Consensus 47 li~s~~~lG~iig~~~~G~LsDr~GRR-------~~lli~~ll~ai~~il~~~a----------~s~~~lii~R~l~G~g 109 (560)
+..+...+.-++..++..++--+++++ .-+.++.+++..+.+++.+. -+.+.++...++++++
T Consensus 328 ~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~g 407 (498)
T COG3104 328 WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFG 407 (498)
T ss_pred HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 444444555566677777777775444 12344555555555555443 2578899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHH----HHhccccchhHHHHHHHHHHHHHHHhhh
Q 008603 110 IGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFG----MSLMTAPSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 110 ~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~----l~~~~~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
-=...++...+++...|+.-.+..++..-.....|..++..+... ....+...-...|+.++...++..+...
T Consensus 408 EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 408 ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred HHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888887776444431 1122223445577777777777655433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.1 Score=46.74 Aligned_cols=143 Identities=11% Similarity=-0.017 Sum_probs=76.4
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH---HHHHHHHHHhhh----hH-HHHHHHH
Q 008603 32 IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL---YFIGGLVMLWSP----NV-YVLLLAR 103 (560)
Q Consensus 32 i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll---~ai~~il~~~a~----s~-~~lii~R 103 (560)
+.--+|- +....+.+.+++.+|..+|..+++.+.++.-|+...+ -+.+ ..++..+..... .+ ..++..-
T Consensus 41 l~~~~G~--s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~-e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~ 117 (521)
T PRK03612 41 ASYLLGD--SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAV-ELLLALLGGLSALILYAAFAFQGLSRLLLYVLV 117 (521)
T ss_pred HHHHhCc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566 6688899999999999999999888764433332211 1111 111111111111 11 2233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFV 179 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~i 179 (560)
++.++..|+..|...-+..+... +.-|...+.......+|.++|.+....+.+ +..+-....++.+.+.++..+
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl-p~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL-PRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHH
Confidence 56777788776666555543322 223555667777788888888665544433 333433333344444444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.3 Score=52.74 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV---MLWSPNVYVLLLARLLDGFGIGLAVTLVP 118 (560)
Q Consensus 42 ~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il---~~~a~s~~~lii~R~l~G~g~G~~~~~~~ 118 (560)
..+.-+...++.+|-++++.-...+ |+-|-+.+.+.-++..+..++ .-+.++.+.+++.-+..|+..|..++.+.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4667778888889888887643222 342222222222222222222 23467899999999999999999999999
Q ss_pred HHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHH
Q 008603 119 IYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFG 154 (560)
Q Consensus 119 ~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~ 154 (560)
..+.|-.|+++|-.+++.....-++|..++.++...
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999998666543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.96 Score=48.44 Aligned_cols=202 Identities=19% Similarity=0.111 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCChHHHHH-HHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIAD-----WLGRRPMLIV-SSVL 82 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD-----r~GRR~~lli-~~ll 82 (560)
..+.+-+.++|.-.+... .+|.+.+.=|. +-++.+....++. -..-.+++.++.| |+|||+.-++ +-.+
T Consensus 34 llLl~LYllQGiP~GL~~-~iP~lL~ak~v--Syt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~l 108 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIG-AIPLLLQAKGV--SYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYL 108 (510)
T ss_pred HHHHHHHHHcCCchhHhh-hhHHHhcCCCc--chhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHH
Confidence 344556778888777766 88988886666 4455554432221 1223456778888 9999874332 2222
Q ss_pred HHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHH
Q 008603 83 YFIGGLVMLW-----------SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCM 151 (560)
Q Consensus 83 ~ai~~il~~~-----------a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li 151 (560)
....+...+. .++...+....++.-|..++--.++-.+.-.+..++..|-+++.-....+.|.+++..+
T Consensus 109 lG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 109 LGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 2222222222 23455555566777777777777788888899999999999988888888888887544
Q ss_pred HHHHHhccc-----cchh---------HHHHHHHHHHHHHHHhhheeccCChhhhhh--hcchHHHHHHHHHHhcCcChH
Q 008603 152 VFGMSLMTA-----PSWR---------LMLGVLFIPSLIYFVLTIFYLPESPRWLVS--KGRMLEAKKVLQSLRGREDVA 215 (560)
Q Consensus 152 ~~~l~~~~~-----~~Wr---------~~f~i~ai~~ll~~il~~~~lpEsP~~L~~--~gr~~ea~~~l~~l~~~~~~~ 215 (560)
...+...++ .+|. ..+++.+.+.++...++.++-+|.+....+ ..+..+.-+.+.+....+.++
T Consensus 189 fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~ 268 (510)
T KOG3574|consen 189 FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVR 268 (510)
T ss_pred eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHH
Confidence 433221111 1221 234455555555555555555554432111 113344444555555544443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.54 Score=50.81 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008603 46 GLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETA 125 (560)
Q Consensus 46 gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~ 125 (560)
+.+.-+-.+-+++..+++.++.+|+..+.=..++.++++++.++.+++++++.-+++-.+.+++.|......-.+. ..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-Hhc
Confidence 4455666667788888888999998766556666778888899999999999999999999999998877666654 466
Q ss_pred CCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccC
Q 008603 126 PPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPE 187 (560)
Q Consensus 126 p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpE 187 (560)
++.. .+-+..+...+.++|.....++.. -...-|..+.+...+.++..+..++.+|.
T Consensus 141 ~~~~----l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GKSS----LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cccc----cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6432 222233333444455443333332 22345777777776666655444444543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.044 Score=60.61 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGR-RPMLIVSSVLYFIGGL 88 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GR-R~~lli~~ll~ai~~i 88 (560)
.+=+.++..+...+.+.|.++.+.+.+|+ ++.+.|.++++--+..+++.|+.|.++||+-+ |+.++.+.+....+++
T Consensus 15 ~~k~f~~~~~~~~g~l~pll~vy~kQLGl--~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 15 VAKLFYLFFGARFGSLFPLLAVYFKQLGL--NPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred eeeeeeeeeeecccccchHHHHHHHHcCC--CHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 33444556666677888889999999999 89999999999999999999999999999964 4666666777777777
Q ss_pred HHHhhh
Q 008603 89 VMLWSP 94 (560)
Q Consensus 89 l~~~a~ 94 (560)
++.+++
T Consensus 93 ll~fv~ 98 (618)
T KOG3762|consen 93 LLVFVP 98 (618)
T ss_pred heeecc
Confidence 777653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.6 Score=50.99 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLW----------SPNVYVLLLARLLDGFGI 110 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~----------a~s~~~lii~R~l~G~g~ 110 (560)
++...+.+..+..++.+++..+.....-+..-|+++.++.++.++..+.... .++.+..+.--++..+..
T Consensus 253 s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~ 332 (433)
T PF03092_consen 253 SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG 332 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence 7788888888888888888888877766777778887777776655543221 122222333445666666
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHhhhee
Q 008603 111 GLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM------TAPSWRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 111 G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~------~~~~Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
+...-....+++|+.|+..-|+..++.....++|..++..+...+... ++.+-.+...++.+..++...+ .++
T Consensus 333 ~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l-l~l 411 (433)
T PF03092_consen 333 MIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL-LFL 411 (433)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH-HHH
Confidence 666666778899999999999999999999999988886666544311 1223334555666666554444 345
Q ss_pred ccCC
Q 008603 185 LPES 188 (560)
Q Consensus 185 lpEs 188 (560)
+|+.
T Consensus 412 Lp~~ 415 (433)
T PF03092_consen 412 LPPQ 415 (433)
T ss_pred cCCC
Confidence 5553
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.48 E-value=9.5 Score=41.82 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
..+..+.++..+..-+.....|.+..+.... +---.+...-+-.+..++..+..|...||..|.+++..+.+..
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence 3556777777777777777777666666321 2233444445555667788889999999999999887776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.43 Score=52.00 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHH
Q 008603 42 PTIEGLIVAMSLIGATCITTCSGAIADWLG-RRPMLIVSSVLYFIGGLVMLWS----PNVYVLLLARLLDGFGIGLAVTL 116 (560)
Q Consensus 42 ~~~~gli~s~~~lG~iig~~~~G~LsDr~G-RR~~lli~~ll~ai~~il~~~a----~s~~~lii~R~l~G~g~G~~~~~ 116 (560)
....|.+.....++.++++.++|.+.||.. -|..+++......++..+.... ...+.++..-.+.|++.....|+
T Consensus 300 ~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pi 379 (480)
T KOG2563|consen 300 GVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPI 379 (480)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCc
Confidence 368899999999999999999999999985 4555666555555553222211 12234444555667766666677
Q ss_pred HHHHHHhhcCCcchhhHhhHHHHH
Q 008603 117 VPIYISETAPPEIRGLLNTLPQFT 140 (560)
Q Consensus 117 ~~~~isE~~p~~~RG~~~~l~~~~ 140 (560)
..-+-.|..-|..-+...|+.+..
T Consensus 380 g~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 380 GFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred ceeeeeeeccccCCcccceeEEee
Confidence 777777765554445555554443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.85 Score=52.39 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHH
Q 008603 14 GNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLI-GATCITTCSGAIADWLG--RRPMLIVSSVLYFIGGLV 89 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~l-G~iig~~~~G~LsDr~G--RR~~lli~~ll~ai~~il 89 (560)
+.++...........+| ++.+.+++ ++.+.+++.+...+ +.+++.++.|+++||++ .|+++.++.++..++.++
T Consensus 338 ~~~~~~~~~~~~~~~lP~yl~~~~g~--s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 338 AQVIDSLAFNGYITFLPKYLENQYGI--SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555 56677999 88999999887766 67899999999999998 446666666666555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.5 Score=52.18 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCChHHHHH----
Q 008603 10 AAAIGNLLQGWDNATIAGAVLYIKRE--FHLETEPTIEGLIVAMSLIGATCITTCSGAIAD-----WLGRRPMLIV---- 78 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp~i~~~--~gls~s~~~~gli~s~~~lG~iig~~~~G~LsD-----r~GRR~~lli---- 78 (560)
.+.+-++++|.-.+.....+|.+.++ -+. +-++.+...-+..= .--.+++.++.| |+||||.-++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~--sy~q~~~fSla~~P--fSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~ 79 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKV--SYSQQAIFSLASYP--FSLKLLWAPIVDSVYSKRIGRRKSWIIPIQY 79 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCC--ChhHheeeeeeech--hHHHHhhhhhhhhhcccccCCcchhhhHHHH
Confidence 34556778888666665778888777 455 44666544322110 012344555555 8999975433
Q ss_pred --HHHHHHHHHHH----------HHhh-------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHH
Q 008603 79 --SSVLYFIGGLV----------MLWS-------P--NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137 (560)
Q Consensus 79 --~~ll~ai~~il----------~~~a-------~--s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~ 137 (560)
++++..++.-+ -.+. + +...+....++.=|-.+.---++-.|.-.+..++.++.+.+..
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq 159 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ 159 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence 33333333322 0110 0 1112333333333444444445556777888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--------------chhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 138 QFTGCVGMFLAYCMVFGMSLMTAP--------------SWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 138 ~~~~~lG~~lg~li~~~l~~~~~~--------------~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
..+.+.|.++++.+...+-..++. .-...+.+.+...++..+++.++-+|.|
T Consensus 160 tvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~ 225 (544)
T PF13000_consen 160 TVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKP 225 (544)
T ss_pred HhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeeccc
Confidence 888888888886655444321110 1112234445555555566667777765
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.02 E-value=30 Score=38.63 Aligned_cols=145 Identities=10% Similarity=0.101 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 008603 8 AIAAAIGNLLQGWDNATIAGAVLYIKREFHLET-EPTIEGLIVAMSLI-GATCITTCSGAIADWLGRRPMLIVSSVLYFI 85 (560)
Q Consensus 8 ~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~-s~~~~gli~s~~~l-G~iig~~~~G~LsDr~GRR~~lli~~ll~ai 85 (560)
.+.+++..|+..+.... +..++|.+=.+. .++....+=.-..+ .+++...+..+++++++|.+++-+....+..
T Consensus 26 ~~~l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~ 101 (491)
T PF03219_consen 26 FLPLALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLG 101 (491)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445555555443322 444555542211 23333333332222 4566777889999999999877766655555
Q ss_pred HHHHHHhh--h-------h----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCcchhhH
Q 008603 86 GGLVMLWS--P-------N----------------------VYVLLLARLLDGFGIGLAVT-LVPIYISETAPPEIRGLL 133 (560)
Q Consensus 86 ~~il~~~a--~-------s----------------------~~~lii~R~l~G~g~G~~~~-~~~~~isE~~p~~~RG~~ 133 (560)
..++.++. | + .|.+.+..++.-+-.....+ .-+.+..|+++.++-.+.
T Consensus 102 fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRf 181 (491)
T PF03219_consen 102 FFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRF 181 (491)
T ss_pred HHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44444431 1 1 12222233333332233222 347788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008603 134 NTLPQFTGCVGMFLAYCMVFGMS 156 (560)
Q Consensus 134 ~~l~~~~~~lG~~lg~li~~~l~ 156 (560)
.+++....++|.+++........
T Consensus 182 Ypl~g~ganigli~sG~~~~~~~ 204 (491)
T PF03219_consen 182 YPLFGLGANIGLIFSGQLTSYFS 204 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988765554443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.43 Score=50.40 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q 008603 52 SLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRG 131 (560)
Q Consensus 52 ~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG 131 (560)
..-.+.+.-.+.-.+.|.+--|+++++-.+...+..++..+.++.+.+=+.-++.|...+.- .+.++|+-+..+++++-
T Consensus 51 wTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yq 129 (433)
T KOG3810|consen 51 WTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYK 129 (433)
T ss_pred hhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHH
Confidence 33445556666668899998899998888888888888889999999888899999887766 67788999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 132 LLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 132 ~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
++.+......-.|-+.+.+..-.+...+..++...-.+......+.. +..+++|..+|-
T Consensus 130 rvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~-~~A~fLP~v~rS 188 (433)
T KOG3810|consen 130 RVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAV-LLALFLPRVKRS 188 (433)
T ss_pred HHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHH-HHHhhCCCCchh
Confidence 99999888888887777666655555555555554444443333333 334566665543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.80 E-value=5.4 Score=43.77 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCh-HHHHHHHH---HHHHHHHHHHh---------hhhHHHHHHHHHHHHHHH
Q 008603 44 IEGLIVAMSLIGATCITTCSGAIADWLGRR-PMLIVSSV---LYFIGGLVMLW---------SPNVYVLLLARLLDGFGI 110 (560)
Q Consensus 44 ~~gli~s~~~lG~iig~~~~G~LsDr~GRR-~~lli~~l---l~ai~~il~~~---------a~s~~~lii~R~l~G~g~ 110 (560)
..-++..++++|-.+|+.+..+. ..-.+| +.+.+..+ ++.+..+++.. -++-+..++.-++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 44567788889999999866433 122333 12322222 23333333322 235567777899999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHH
Q 008603 111 GLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 111 G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~ 153 (560)
|-..+.+..+..+..++++|..+..+..++..+|..+|.++.+
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998899888865543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.12 E-value=1.7 Score=47.65 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=63.4
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------CChHHHHHHHHHHH----HHHHHHH-hhhhH
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL-------GRRPMLIVSSVLYF----IGGLVML-WSPNV 96 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-------GRR~~lli~~ll~a----i~~il~~-~a~s~ 96 (560)
+++..+-.|. +....-+...++..+..+|.+++|.++|++ +|.+.-.+.+.+.+ ...++.. +..+.
T Consensus 271 ~~~~~~~~~~--~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s 348 (493)
T KOG1330|consen 271 IYYSYELIGF--DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSS 348 (493)
T ss_pred HHHHHHHhCC--ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHH
Confidence 3444444454 334555677778888899999999999984 23332222222222 2222222 12333
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcchhhHhhHHHHHH
Q 008603 97 YVLLLARLLDGFGIGLAV-TLVPIYISETAPPEIRGLLNTLPQFTG 141 (560)
Q Consensus 97 ~~lii~R~l~G~g~G~~~-~~~~~~isE~~p~~~RG~~~~l~~~~~ 141 (560)
..+.+.-++.|...-... ++...+..|..|++.|..+.++-....
T Consensus 349 ~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~ 394 (493)
T KOG1330|consen 349 MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFE 394 (493)
T ss_pred HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHH
Confidence 444445555555444332 333446788999999999998866544
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.89 E-value=4 Score=42.97 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
.++++++++.+........+...+..++|.. -. +...+.-+.++++.+.+..++|-|.++.++...+.+...
T Consensus 32 ~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~----sl----~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA 103 (390)
T KOG3097|consen 32 LILSIAFLLTFTAYLGLQNLQTSVNYDLGTV----SL----GALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA 103 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----hh----hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555444444444444444455431 11 223344456677777999999999999998877766544
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cch-------------hhHhhHHHHHHHHHHHHHHHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPP--EIR-------------GLLNTLPQFTGCVGMFLAYCMVF 153 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~--~~R-------------G~~~~l~~~~~~lG~~lg~li~~ 153 (560)
... -+.+..++-.-.+.|++.+..+..--+|++++... +.| |....+++...-+|..++..+..
T Consensus 104 ~Nl-~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~ 182 (390)
T KOG3097|consen 104 ANL-EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT 182 (390)
T ss_pred hhc-chhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 35778888889999999988776666666655432 333 33444555556666666655554
Q ss_pred HH
Q 008603 154 GM 155 (560)
Q Consensus 154 ~l 155 (560)
..
T Consensus 183 ~~ 184 (390)
T KOG3097|consen 183 LF 184 (390)
T ss_pred HH
Confidence 43
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=85.73 E-value=25 Score=38.24 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRR--PMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVP 118 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR--~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~ 118 (560)
+...-|.+-++..+.+.++.+..|.+..++.+- ..+....++.+...++|++.+|.+...++.++.+.......+.+.
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888999999996666654 344445556666777888899999999998888877777777777
Q ss_pred HHHHhhcCCcchhhHhhHH
Q 008603 119 IYISETAPPEIRGLLNTLP 137 (560)
Q Consensus 119 ~~isE~~p~~~RG~~~~l~ 137 (560)
.-++.....+.-|..+|+.
T Consensus 363 ~qIA~~l~~e~yaLVFGiN 381 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGIN 381 (412)
T ss_pred HHHHHhccccceeeeeeeH
Confidence 7777666666666555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.76 E-value=14 Score=38.09 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHHh----hh---hHHHHHHHHHHHHHHHHHHHH
Q 008603 45 EGLIVAMSLIGATCITTCSGAIADWLGRR--PMLIVSSVLYFIGGLVMLW----SP---NVYVLLLARLLDGFGIGLAVT 115 (560)
Q Consensus 45 ~gli~s~~~lG~iig~~~~G~LsDr~GRR--~~lli~~ll~ai~~il~~~----a~---s~~~lii~R~l~G~g~G~~~~ 115 (560)
.|.+.+.+.+..++|+-+...+..|-.+| +.+.+..+..+....+... +| +...-+++..+.-.+.|.++|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 47888888888888888887777765555 4555555544443333222 12 222335566666778899999
Q ss_pred HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHHh
Q 008603 116 LVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT----APSWRLMLGVLFIPSLIYFVL 180 (560)
Q Consensus 116 ~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~----~~~Wr~~f~i~ai~~ll~~il 180 (560)
...-+=+...|.+.|...+.++-.-.++-..+ .++..+ -.+-|.+|.++.+...+..++
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvCl------vLynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCL------VLYNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhh------hheecccccCccccchhhhhhHHHHHHHHHH
Confidence 99999999999999998888765544332222 222211 235678898888877666544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=83.33 E-value=16 Score=40.69 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 44 IEGLIVAMSLIGATCITTCSGAIADWLGRR--PMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYI 121 (560)
Q Consensus 44 ~~gli~s~~~lG~iig~~~~G~LsDr~GRR--~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~i 121 (560)
.-|.+-++..+...+..+..|++-.++.|- ..+.+..++.+...++|.+.+|+|..+++.++.+.......+++..-+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777788889999986666442 344444555566677888899999999999999988888888888888
Q ss_pred HhhcCCcchhhHhhHH
Q 008603 122 SETAPPEIRGLLNTLP 137 (560)
Q Consensus 122 sE~~p~~~RG~~~~l~ 137 (560)
+.....+.-|...|+.
T Consensus 379 A~~L~~~~~aLvFGiN 394 (511)
T TIGR00806 379 ASSLSKELCALVFGIN 394 (511)
T ss_pred HHHhcccceEEEEecH
Confidence 8777777667666653
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.15 E-value=83 Score=35.10 Aligned_cols=128 Identities=10% Similarity=0.085 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCC-CChHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh---------hh-
Q 008603 28 AVLYIKREFHLE-TEPTIEGLIVAMSLI-GATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS---------PN- 95 (560)
Q Consensus 28 ~lp~i~~~~gls-~s~~~~gli~s~~~l-G~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a---------~s- 95 (560)
++-.+++.+-.. ..+.....+=....+ ++++..++..++++++-|.+++-+.+..+....+++++. ++
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 355678887653 234555555555555 678888999999999999988877666666555555441 11
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHH
Q 008603 96 ----------------------VYVLLLARLLDGFGIGLAVT-LVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMV 152 (560)
Q Consensus 96 ----------------------~~~lii~R~l~G~g~G~~~~-~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~ 152 (560)
-|...+...+.=+-.....+ .-+....|++..++-.+..++++...+++..++..+.
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 13333333333333333322 3456778999999999999999999999998886655
Q ss_pred HHH
Q 008603 153 FGM 155 (560)
Q Consensus 153 ~~l 155 (560)
...
T Consensus 205 ~~~ 207 (509)
T COG3202 205 SWL 207 (509)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=82.48 E-value=21 Score=30.39 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 008603 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGG 87 (560)
Q Consensus 42 ~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~ 87 (560)
....+.......++..++..+.+.+.|..|.+..+.+..++..++.
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4556677777788888888889988888887766655554444433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.27 E-value=34 Score=37.15 Aligned_cols=160 Identities=11% Similarity=0.002 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh---HHHHHHHHHHHHHHHHHHhh-----
Q 008603 22 NATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRR---PMLIVSSVLYFIGGLVMLWS----- 93 (560)
Q Consensus 22 ~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR---~~lli~~ll~ai~~il~~~a----- 93 (560)
......+.+++.+++-... . .......+.+.+.+...+.-.+--+..-| ++.....+...+..+.+.++
T Consensus 34 WN~fiTa~~y~~~~~~~~~--~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~~~ 110 (406)
T KOG1479|consen 34 WNMFITASDYYYYRFPGYH--N-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVKTD 110 (406)
T ss_pred hHhhhccHHHHHhhcCCCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455556788888875422 2 33344444444444444433333333322 22111111111112222221
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH-hccc-cchhHHH
Q 008603 94 ----PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS-LMTA-PSWRLML 167 (560)
Q Consensus 94 ----~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~-~~~~-~~Wr~~f 167 (560)
..+...++.-.+.+++.|..........++ +|++.-.-.+ .+.++++.+..+..+... ..+. ..=-.+|
T Consensus 111 ~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~y 185 (406)
T KOG1479|consen 111 TWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIY 185 (406)
T ss_pred CccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehh
Confidence 235666666777888888776665555554 4555432211 122333333322222221 1121 1112244
Q ss_pred HHHHHHHHHHHHhhheeccCCh
Q 008603 168 GVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 168 ~i~ai~~ll~~il~~~~lpEsP 189 (560)
++.+.+.++.+++.+..+|..|
T Consensus 186 F~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 186 FITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhcch
Confidence 4444444444444455777776
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.86 E-value=60 Score=35.64 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH-HHHHHHHHHh----h---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 48 IVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL-YFIGGLVMLW----S---PNVYVLLLARLLDGFGIGLAVTLVPI 119 (560)
Q Consensus 48 i~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll-~ai~~il~~~----a---~s~~~lii~R~l~G~g~G~~~~~~~~ 119 (560)
+.....+..++..+..-.+.-|+..|.=+..++++ .++..+.+.+ . ..++..++.-++.|++.+........
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g 129 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG 129 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence 33344444555555555555565543222223222 2222222221 1 24666677778888888888766666
Q ss_pred HHHhhcCCcc
Q 008603 120 YISETAPPEI 129 (560)
Q Consensus 120 ~isE~~p~~~ 129 (560)
+.+ .+|++.
T Consensus 130 la~-~fp~~~ 138 (437)
T TIGR00939 130 LAG-VFPSTY 138 (437)
T ss_pred hcc-cCCHHH
Confidence 655 666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 560 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-21 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 64 GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISE 123
G I+D +GRRP+++V ++ + LV + + ++ VL+ A + G G G+ + +
Sbjct: 56 GPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD 115
Query: 124 TAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183
N+L V LA + G L T +WR L +
Sbjct: 116 LYERTQLRHANSLLNMGILVSPLLA--PLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173
Query: 184 YLPES 188
++PE+
Sbjct: 174 WMPET 178
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 18/145 (12%), Positives = 56/145 (38%), Gaps = 3/145 (2%)
Query: 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLL 101
+ G + M + I + I + +G + L+++ + + + ++ + +++
Sbjct: 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI 317
Query: 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTA 160
+ L F + + YI+ + + F + M V ++ +
Sbjct: 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM--SVLAGNMYES 375
Query: 161 PSWRLMLGVLFIPSLIYFVLTIFYL 185
++ VL + +L + ++++F L
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVFTL 400
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 8/166 (4%)
Query: 30 LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRRPMLIVSSVLYFIGG 87
Y+K H + + + T G ++D + G R V +
Sbjct: 277 TYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334
Query: 88 LVMLW---SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVG 144
++ W + N V ++ ++ GF I V L+ ++ E AP + G G +G
Sbjct: 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 394
Query: 145 MFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPR 190
+A + G + W V+ S++ +L I + R
Sbjct: 395 GSVAASAIVGY-TVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 439
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 47/353 (13%), Positives = 95/353 (26%), Gaps = 118/353 (33%)
Query: 189 PRWLVSKGRMLEA-KKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAAD 247
++ VS+ + ++ L LR ++V L++G+ G+T + A D+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNV------LIDGVLGSGKTWV-------ALDVCLS 173
Query: 248 QDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQG 307
+ Q K+ + W+ + + ++++ L L
Sbjct: 174 YKV-----QCKMDF---KIFWLN--------LKNCNSPETVLEMLQKLL----------- 206
Query: 308 SMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVR--EGDEYPSDAAGGDS----DD----- 356
+ P++ S N + L R + Y + +
Sbjct: 207 ---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE------NCLLVLLNVQNAK 257
Query: 357 -----NLQSP--LISRQTTSIEKDMVPPAHGTLSSMRHGSQV------------------ 391
NL L +R D + A T S+ H S
Sbjct: 258 AWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 392 -----QGNAGEPVGMGIGGG--------WQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVP 438
+ P + I W WK + K + E P
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCD----KLTTIIESSLNVLE--P 368
Query: 439 ASHRGSLV--SMHGEDVPVGGEVVQA--AALVSQ------AALCSKELLDQNP 481
A +R S+ + ++ ++ L L+++ P
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 560 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.83 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.77 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.73 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.6 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.38 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.2 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.13 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.01 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.01 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.41 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.38 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=257.42 Aligned_cols=213 Identities=32% Similarity=0.609 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLET------EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~------s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll 77 (560)
.+.++++++++.++.|||.+.+++.+|.+.++++.+. +....|++++++.+|.+++++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3455667789999999999999999999999885421 2467789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH
Q 008603 78 VSSVLYFIGGLVML------------------WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQF 139 (560)
Q Consensus 78 i~~ll~ai~~il~~------------------~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~ 139 (560)
++.+++.++.++++ +++|++.++++|+++|++.|...+.++.|++|++|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCcC
Q 008603 140 TGCVGMFLAYCMVFGMSLM------TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRED 213 (560)
Q Consensus 140 ~~~lG~~lg~li~~~l~~~------~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~ 213 (560)
+..+|.+++++........ ....||+.+.+..++.++..+ ..+++||||+|+..+++.+++.+.+++....+.
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 9999999987776655432 234789888888888777554 467899999999999999999999988876554
Q ss_pred hHHH
Q 008603 214 VAGE 217 (560)
Q Consensus 214 ~~~~ 217 (560)
...+
T Consensus 249 ~~~~ 252 (491)
T 4gc0_A 249 ATQA 252 (491)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=201.14 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=161.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.....+.+++..++.+++.....+.+|.+.+++|+ +..+.+++.+++.++.+++.++.|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 445566777888889999999999999999999999 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 83 YFIGGLVM---LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 83 ~ai~~il~---~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
.+++.+++ .++++++.++++|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+...+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999977665443222
Q ss_pred ccc------------------------hhHHHHHHHHHHHHHHHhhh-eeccCChh
Q 008603 160 APS------------------------WRLMLGVLFIPSLIYFVLTI-FYLPESPR 190 (560)
Q Consensus 160 ~~~------------------------Wr~~f~i~ai~~ll~~il~~-~~lpEsP~ 190 (560)
... ||+.|++.+++.++..++.. +..||+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 222 99999888777766555433 33577654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=196.19 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+...+.++++.++.+++.....+.+|.+.+++ . ++.+.+++.+++.++.+++.++.|+++||+|||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 355667788888888998888999999999999 8 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 84 FIGGLVMLW----SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 84 ai~~il~~~----a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
+++.+++++ +++++.++++|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+...+ .+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~ 180 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG--MA 180 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH--HH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 999999999 999999999999999999999999999999999999999999999999999999996665332 24
Q ss_pred ccc-hhHHHHHHHHHHHHHHHhhheeccCChhhh
Q 008603 160 APS-WRLMLGVLFIPSLIYFVLTIFYLPESPRWL 192 (560)
Q Consensus 160 ~~~-Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L 192 (560)
..+ ||+.|++.+++.++..++.++++||+|+..
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 556 999999999998887777778889988653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=175.15 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
+.++++.++.+++.....+.+|.+.+++|. ++.+.+++.+...++..++.++.|+++||+|||+.++++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 456777788888889999999999999999 779999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
++.++++++.+++.|++.|++.+...+....+++|++|+++|++.+++.+....+|..+++.+. ....+..+||+.|+
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG--GLLDTMWNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH--HHSSCHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996554 44455668999999
Q ss_pred HHHHHHHHHHHhhheeccCChhh
Q 008603 169 VLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 169 i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
+.+++.++..++..+++||+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHCcccCCC
Confidence 99999888777667788998754
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=169.05 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH-----cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATI-AGAVLYIKRE-----FHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVLYF 84 (560)
Q Consensus 12 ~l~~fl~g~~~~~~-~~~lp~i~~~-----~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll~a 84 (560)
.+..+...+..... ....+++.++ +|. +..+.+++.+++.++.+++.++.|+++|| +|||++++++.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 33444444444434 3345566666 999 88999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 85 IGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI--RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 85 i~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~--RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
++.++++++++++.++++|++.|++.+...+....+++|++|+++ |+.+.++.+...++|..+++.+.. ...+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g 174 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG--AAQEAAG 174 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH--HHHhhhh
Confidence 999999999999999999999999999999999999999999988 777888888999999999966553 3445568
Q ss_pred hhHHHHHHHHHHHHHHHhhhee
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
||+.|++.++..++..++..+.
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888777765554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=156.36 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHcC------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAV-LYIKREFH------LETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLY 83 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~l-p~i~~~~g------ls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ 83 (560)
.+..++..+......+.+ +++.+++| . ++.+.+++.+++.++.+++.++.|+++||+ |||++++++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344444444444444444 46778899 8 779999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH---HHHHHHHHHHHHHHHHHHHHhcc
Q 008603 84 FIGGLVMLWSP-NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTL---PQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 84 ai~~il~~~a~-s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l---~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
+++.+++++++ +++.++++|++.|++.+...+..+.+++|.+|+++|++..+. .+...++|..+++.+.. ...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~ 173 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP--LLLK 173 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST--HHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc
Confidence 99999999998 999999999999999999999999999999999999877666 78888888888865543 3344
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhe
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
..+||+.|++.+++.++..++..+
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998887776554433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=131.99 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q 008603 14 GNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS 93 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a 93 (560)
..+........+....|++.+..+. +............+..+++.++.+.+.||+|||+.++.+....+++.+..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 285 SIFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 3333444445555667788888887 66777777778888899999999999999999999999988888777665542
Q ss_pred -----hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH----hccccch
Q 008603 94 -----PNVYVL-LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS----LMTAPSW 163 (560)
Q Consensus 94 -----~s~~~l-ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~----~~~~~~W 163 (560)
++...+ .+.-+..+++.+ ..+..+.+.+|++|++.|++++++......+|.++++...+.+. .....++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~ 441 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN 441 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred HhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 122222 222223333333 33677899999999999999999999999998888755443321 1122355
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHH
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAK 202 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~ 202 (560)
...|++.++++++.++++++++||| |||..|+.
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PET------kg~tLeei 474 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPET------KGKTLEEL 474 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCC------TTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHheecCC------CCCCHHHH
Confidence 6678888999999888888999999 77765543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-11 Score=123.62 Aligned_cols=169 Identities=20% Similarity=0.126 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHHHHH-HH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRRPMLIVSSVLYF-IG 86 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~--GRR~~lli~~ll~a-i~ 86 (560)
..+..++...........+|.+.++ +|. ++.+.+++.+...++.+++.++.|+++||+ |||+.+.++.++.. ++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 3444444445455556666665555 888 789999999999999999999999999999 99999888877766 66
Q ss_pred HHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH-HHHHHHHHHHHHHhccccch
Q 008603 87 GLVMLWS--PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 87 ~il~~~a--~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l-G~~lg~li~~~l~~~~~~~W 163 (560)
.+++.+. .+.+.+++..++.|++.+...+....++.|.+|++.|++++++.+....+ |..+++.+. ....+..+|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~--g~l~~~~g~ 412 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVDFFGW 412 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSSCS
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCc
Confidence 6666555 36778888889999999998888899999999999999999999999999 999986554 344456689
Q ss_pred hHHHHHHHHHHHHHHHhhhe
Q 008603 164 RLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~ 183 (560)
+..|++.+++.++..++.++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877665443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-10 Score=121.61 Aligned_cols=145 Identities=12% Similarity=0.161 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 43 TIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYIS 122 (560)
Q Consensus 43 ~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~is 122 (560)
...++..+...++.+++.++.|+++||+|||+.+.++.++.+++.++.++.++.+.+++..++.+++.+...+....+++
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888899999999999999999999988888887777777778888888888888888877777889999
Q ss_pred hhcCCcchhhHhhH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 123 ETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 123 E~~p~~~RG~~~~l-~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
|.+|++.|++..++ .+....+|..+++.+.. ...+..++...|.+.+++.++..++.+++.||.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG--NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH--THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999888 47778888888865543 3334557888999888888887777667777754
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-09 Score=112.39 Aligned_cols=151 Identities=5% Similarity=-0.053 Sum_probs=118.3
Q ss_pred HHHHHHHHH-H-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008603 22 NATIAGAVL-Y-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVL 99 (560)
Q Consensus 22 ~~~~~~~lp-~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~l 99 (560)
.......+| + +++.+|. ++.+.+++.+...++.+++.++.|+++||+|||+.+.++.++.+++.+++.+.++...+
T Consensus 274 ~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGL 351 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 334444444 4 4555698 78999999999999999999999999999999999999999999998888888877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLMLGVLFIPSLIYF 178 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~-Wr~~f~i~ai~~ll~~ 178 (560)
+.. ++.|++.+...+....++.|.+|++ |+.+.++.. ...+|..+++.+. ....+..+ ++..|.+.++..++..
T Consensus 352 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 352 IAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVM--GFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHH--HHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 544 8889999999999999999999977 888888766 5567877775544 33445556 8888887766655544
Q ss_pred H
Q 008603 179 V 179 (560)
Q Consensus 179 i 179 (560)
+
T Consensus 427 ~ 427 (438)
T 3o7q_A 427 I 427 (438)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-11 Score=125.95 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---H
Q 008603 15 NLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV---M 90 (560)
Q Consensus 15 ~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il---~ 90 (560)
.++.........+.+|. +++++|+ ++.+.|++.++..++.++++++.|+++||+|||++++++.++.+++... .
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T 2cfq_A 16 FFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555664 5667899 7789999999999999999999999999999999999888776543211 1
Q ss_pred HhhhhHH-HHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 91 LWSPNVY-VLLLARLLDGFGIGLA----VTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 91 ~~a~s~~-~lii~R~l~G~g~G~~----~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
.+++... .++..+++.+++.+.. .+....+..+. ++.|+...+....+..+|..+++.+...+. + .+||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~--~-~~~~~ 168 (417)
T 2cfq_A 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWALGASIVGIMF--T-INNQF 168 (417)
T ss_dssp THHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHHHHHHHHHHH--H-HCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHHHHHHHHHHH--H-hchhH
Confidence 2222111 1233444444433333 33333444333 145566667776677778777765543332 2 37999
Q ss_pred HHHHHHHHHHHHHHhhheeccCC
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEs 188 (560)
.|++.+++.++..++..+..||+
T Consensus 169 ~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 169 VFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCccc
Confidence 99888777655444433334454
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-10 Score=118.34 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=116.7
Q ss_pred HHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-----HHHHHHHHHHHHHHhhh----
Q 008603 25 IAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI-----VSSVLYFIGGLVMLWSP---- 94 (560)
Q Consensus 25 ~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll-----i~~ll~ai~~il~~~a~---- 94 (560)
....+|. ..+.++. +....+++.+...++.+++.++.++++||+|||+... ++.++.+++.+++.+..
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4aps_A 302 GSVVLATFAAERVDS--SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG 379 (491)
T ss_dssp GGTHHHHHHHHSCCC--SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred ccHHHHHHHHHHhcc--CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334454 4444666 3355677778888888999999999999999986554 66777777666665543
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q 008603 95 -----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGV 169 (560)
Q Consensus 95 -----s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i 169 (560)
+.+.+++.-++.|++.+...+..+.++.|.+|++.|++++++.+....+|..+++.+. ... ...++...|.+
T Consensus 380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~--~~~-~~~~~~~~~~~ 456 (491)
T 4aps_A 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV--TLY-NAKSEVAYFSY 456 (491)
T ss_dssp CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG--GGG-GGSSTTHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-hcccHHHHHHH
Confidence 6677788889999999998899999999999999999999999999999999986553 222 23466778888
Q ss_pred HHHHHHHHHHhhheeccCC
Q 008603 170 LFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 170 ~ai~~ll~~il~~~~lpEs 188 (560)
.+++.++..++.+++.++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 457 FGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp THHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877777666666654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-07 Score=102.62 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhhCC----hHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHH
Q 008603 45 EGLIVAMSLIGATCITTCSGAIA----DWLGR----RPMLIVSSVLYFIGGLVMLWS---------PNVYVLLLARLLDG 107 (560)
Q Consensus 45 ~gli~s~~~lG~iig~~~~G~Ls----Dr~GR----R~~lli~~ll~ai~~il~~~a---------~s~~~lii~R~l~G 107 (560)
.+.+.....++.++..++.+.+. +|.|| ++.+.++.++.+++.+++.+. .+.+.+++.-++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44454444455555555555543 44443 346667777777777766653 36677788889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW---------RLMLGVLFIPSLIYF 178 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W---------r~~f~i~ai~~ll~~ 178 (560)
++.+...+..+.++.|.+|++.||+++++.+....+|..+++.+..........+| +..|++.+++.++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999665543321111123 344777777777766
Q ss_pred HhhheeccCC
Q 008603 179 VLTIFYLPES 188 (560)
Q Consensus 179 il~~~~lpEs 188 (560)
++.+++.++.
T Consensus 497 ~~~~~~~~~~ 506 (524)
T 2xut_A 497 IVFALYARSY 506 (524)
T ss_dssp HHHC------
T ss_pred HHHHHHHHHh
Confidence 6655665554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.2e-08 Score=98.75 Aligned_cols=150 Identities=17% Similarity=0.059 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH-HHHHHH--H
Q 008603 14 GNLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL-YFIGGL--V 89 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll-~ai~~i--l 89 (560)
..++............|. +++.+|. ++.+.+++.+...++.+++.++.+++.||+||+. ..+..+ ...+.. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 333444444444555554 4555888 7789999999999999999999999999998732 222222 222222 2
Q ss_pred HHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Q 008603 90 MLW--SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLML 167 (560)
Q Consensus 90 ~~~--a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f 167 (560)
... .++.+.+++.-++.|++.+...+....++.|.+| ++|++++++.+....+|..+++.+... ..+..+|+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~--l~~~~~~~~~~ 359 (375)
T 2gfp_A 283 PDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM--LPQTGQGSLGL 359 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH--HHHHHHHHHHH
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH--HhcCCcccHHH
Confidence 222 2467777788899999999999999999999998 899999999999999998887544322 22344566666
Q ss_pred HHH
Q 008603 168 GVL 170 (560)
Q Consensus 168 ~i~ 170 (560)
.+.
T Consensus 360 ~~~ 362 (375)
T 2gfp_A 360 LMT 362 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 560 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 7e-12 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 8e-07 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-08 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 65.5 bits (158), Expect = 7e-12
Identities = 27/190 (14%), Positives = 63/190 (33%), Gaps = 8/190 (4%)
Query: 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGA 65
+ + G A A+ Y+ E G ++ I G+
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFS--RGDLGFALSGISIAYGFSKFIMGS 81
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVMLWSP----NVYVLLLARLLDGFGIGLAVTLVPIYI 121
++D R L +L L M + P ++ V+ + L G+ G+ +
Sbjct: 82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141
Query: 122 SETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLT 181
+ RG + ++ VG + ++F + + W L + +++ +
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200
Query: 182 IFYLPESPRW 191
+ ++P+
Sbjct: 201 FAMMRDTPQS 210
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 49.3 bits (116), Expect = 8e-07
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 3/187 (1%)
Query: 6 LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGA 65
L IA A + + + + + + + I T +
Sbjct: 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310
Query: 66 IADWLGRRPMLIVSSVLYFIGGLVML--WSPNVYVLLLARLLDGFGIGLAVTLVPIYISE 123
R + L I +V + N V ++ ++ GF I V L+ ++ E
Sbjct: 311 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370
Query: 124 TAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183
AP + G G +G +A + G + W V+ S++ +L I
Sbjct: 371 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY-TVDFFGWDGGFMVMIGGSILAVILLIV 429
Query: 184 YLPESPR 190
+ R
Sbjct: 430 VMIGEKR 436
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 5/179 (2%)
Query: 30 LYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV 89
+++ H+ + G+I A + + G ++D LG R L+ +
Sbjct: 32 IWLHDINHIS--KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89
Query: 90 MLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAY 149
+L L+ G+ + + I + G MF
Sbjct: 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149
Query: 150 CMVFGMSL---MTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVL 205
G S+ M + + + + +LI VL F ++P +
Sbjct: 150 GWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAF 208
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 19/161 (11%), Positives = 61/161 (37%), Gaps = 3/161 (1%)
Query: 42 PTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLL 101
+ G + M + I + I + +G + L+++ + + + ++ + +++
Sbjct: 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI 317
Query: 102 ARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP-QFTGCVGMFLAYCMVFGMSLMTA 160
+ L F + + YI+ + + F + M V ++ +
Sbjct: 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM--SVLAGNMYES 375
Query: 161 PSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEA 201
++ VL + +L + ++++F L + + ++ E
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEV 416
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 560 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.8 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.11 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4.7e-19 Score=183.24 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
++.+.+.++++++..+++...++.+.|++. ++|+ +.++.|++.+++.++..++.++.|+++||+|||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 466667777888888888888888888876 5899 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 84 FIGGLVMLWSP----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 84 ai~~il~~~a~----s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
+++.+++++++ +++.+++.|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+..... ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~-~~ 178 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-AW 178 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH-HH
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh-hh
Confidence 99998887754 67899999999999999999999999999999999999999999999999998865543332 23
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
..+||+.|++.+++.++..++.+++.+|+|+.
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (447)
T d1pw4a_ 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQS 210 (447)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hhcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence 45899999999999888888878888887754
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.6e-12 Score=129.92 Aligned_cols=177 Identities=15% Similarity=0.066 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 10 AAAIGNLLQGWDNATIAGAVL-YIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 10 ~~~l~~fl~g~~~~~~~~~lp-~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
.+.+..|+..+......+.+| ++++++|+ ++++.|++.++..++.+++.++.|.++||+|||+.++++.++..++.+
T Consensus 11 ~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~ 88 (417)
T d1pv7a_ 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 334455666666677777777 47788999 889999999999999999999999999999999999999999988888
Q ss_pred HHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCC--cchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 89 VMLWSPNVYVLL----LARLLDGFGIGLAVTLVPIYISETAPP--EIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 89 l~~~a~s~~~li----i~R~l~G~g~G~~~~~~~~~isE~~p~--~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
+..+..+..... +.+++.+.+.+...........+..++ +.+....+........+..+++.+..... ..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~ 165 (417)
T d1pv7a_ 89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---TIN 165 (417)
T ss_dssp HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH---HHC
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc---ccc
Confidence 888776655444 334444444443333333333333322 23444555666666677776654443322 235
Q ss_pred hhHHHHHHHHHHHHHHHhhheeccCChhh
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
|+..+........+..++..+..+|+|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 166 NQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred ccccccchhhHHHHHHHHHHHHhcccccc
Confidence 66666666666666666667778877643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=8.5e-12 Score=124.44 Aligned_cols=146 Identities=12% Similarity=0.167 Sum_probs=125.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 41 EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120 (560)
Q Consensus 41 s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~ 120 (560)
+....+...+...++.+++..+.+++.||+|||+.+.++.++.+++.+++.+.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcchhhHhhHH-HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCC
Q 008603 121 ISETAPPEIRGLLNTLP-QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 121 isE~~p~~~RG~~~~l~-~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEs 188 (560)
++|.+|++.|++..++. +....+|..+++.+. ....+..+|+..|++.+++.++..++..+++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~--G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA--GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999974 566778888885443 4445667899999999988888777766666643
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2e-09 Score=109.77 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=114.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---h--hhhHHHHHHHH
Q 008603 29 VLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVML---W--SPNVYVLLLAR 103 (560)
Q Consensus 29 lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~---~--a~s~~~lii~R 103 (560)
.+++.+.++. +....++..+...++.+++.++.|+++||++||+......+...+..+... . ..+.+..+++-
T Consensus 273 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T d1pw4a_ 273 PTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 350 (447)
T ss_dssp HHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhccccccc--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3455666788 779999999999999999999999999999987644433333322222221 1 45677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH-HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhh
Q 008603 104 LLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTI 182 (560)
Q Consensus 104 ~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l-G~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~ 182 (560)
++.|++.+...+....++.|.+|++.||+++++.+...++ |.++++.+. ....+..+|+..|++.++..++..++..
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~--g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 8999999888888999999999999999999998887776 455564433 3445677899999888887777666544
Q ss_pred eec
Q 008603 183 FYL 185 (560)
Q Consensus 183 ~~l 185 (560)
++.
T Consensus 429 ~~~ 431 (447)
T d1pw4a_ 429 VVM 431 (447)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|