Citrus Sinensis ID: 008614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
Secondary Structure (PSIPRED)
ccHHcHHHHHHcEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEEcccccEEHHHHHHHHHHHHHHHHHHHHHEEEEcccccccHHHHHHHHHHcccccccccccHHHHHcccEEEEEEEccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccEEEEccccccEEEEEEEcEEEEEEcccEEEEEEcccccEEcccHHHHHccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHHHHHHHccHEEEEEEEcccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccccccEcccccccccccccHHHHHHHHHcHHHHHHHHccccHEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccHHcccccccccccccccEEEEHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHcEEEEEEEcEEEEEccccEEEEEEcccccccHHHHHHHHHcccccccccccccHHHHEHHHHHHHEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILdpfffyipdlkdeikcihcndtlgITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKkggrevledPMVRMWMLFFIDglailpipqvlvifpirdtgfstAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCwreasenhtgrshsYVFCNkcfgdykllndscpistgnttrynfGIYKDALqsgivretyfpkKLLRCLHWGLQKLSAfgqdletsddvGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIdslvsdlpddtakQVKLHFGRNLLGqmqkfenwedysldhlcgclkpvffserttiisEGESIHEMLFVLEGQISIYSKSKLIglkrqedgnycgeEIIDWaenqssshghlpistrTIIAhtnvegftlktdELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
Flexible Loop (DISEMBL)
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASEnhtgrshsYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQklrqikhwkhfkdISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQmkrrqsrshe
Low Complexity Region (SEG)
MLVACLLiiiiiiiVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
Disordered region (IsUnstruct)
*LVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHIS***************FKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQ**SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFK*************
Disordered Region (DISOPRED)
******LIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQ**********TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMK*RQ*****
Disordered Region (DISEMBL)
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELRE**********FKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFK*************
Disordered Region (DISPRO)
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSH*
Transmembrane Helix (TMHMM)
iiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	559	2.2.26 [Sep-21-2011]
O65717	716	Cyclic nucleotide-gated i	yes	no	0.883	0.689	0.362	4e-88
Q9LD40	696	Putative cyclic nucleotid	no	no	0.890	0.715	0.337	1e-81
Q9SKD7	706	Probable cyclic nucleotid	no	no	0.876	0.694	0.359	2e-81
Q9LNJ0	711	Probable cyclic nucleotid	no	no	0.896	0.704	0.323	2e-80
O82226	747	Probable cyclic nucleotid	no	no	0.876	0.655	0.331	1e-78
Q9M0A4	733	Putative cyclic nucleotid	no	no	0.876	0.668	0.333	3e-78
Q8RWS9	717	Probable cyclic nucleotid	no	no	0.872	0.680	0.328	1e-74
Q9S9N5	738	Putative cyclic nucleotid	no	no	0.887	0.672	0.296	1e-69
Q9FXH6	753	Putative cyclic nucleotid	no	no	0.887	0.658	0.290	7e-69
Q8GWD2	649	Probable cyclic nucleotid	no	no	0.905	0.779	0.300	3e-64

>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1

 Score =  326 bits (835), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 296/521 (56%), Gaps = 27/521 (5%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITA+V+RS  D   +LHI  + 
Sbjct: 96  NKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQF 155

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFP 146
           R      + R   + +  + K      RE+ +  +      F ID LA+LP+PQ++++  
Sbjct: 156 RTGFIAPSSRVFGRGVLVEDK------REIAKRYLSSH---FIIDILAVLPLPQMVILII 206

Query: 147 IRDTGFSTAMT------FFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLY 199
           I     S+++       F V  QY+ R IR Y L+ +    SG++ +  W   AF + LY
Sbjct: 207 IPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLY 266

Query: 200 LQSGHMFGALWYYYAIEKATDCWREASE-NHTGRSHSYVFCN-KCFGDYKLLNDSCPIST 257
           + + H+FGA WY ++IE+ T CW++A E N+       ++C+ +  G    LN+SCPI T
Sbjct: 267 MLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQT 326

Query: 258 GNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAI 317
            NTT ++FGI+ DALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  + E  FA+
Sbjct: 327 PNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAV 386

Query: 318 WMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKR 373
           +++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +IR  ++
Sbjct: 387 FISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQ 446

Query: 374 ENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVF 433
                   +  ++L+S+LP D  + +K H    LL ++  FE  ++  LD LC  L+PV 
Sbjct: 447 YKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVL 506

Query: 434 FSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIIDWAENQ 489
           ++E + I+ EG+ + EMLF++ G+ ++I +     G    E    G++CGEE++ WA + 
Sbjct: 507 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDP 566

Query: 490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
            SS  +LPISTRT+ A   VE F LK D+LK   +  RR +
Sbjct: 567 HSS-SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLH 606

Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2

 Score =  304 bits (779), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 294/560 (52%), Gaps = 62/560 (11%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK +L  +VIA+ +DP FFYIP +  E  C++ +  L I A+V+R+ +D   ++HI  + 
Sbjct: 80  NKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIVFQF 139

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMV----RMWMLFFIDGLAILPIPQVL 142
           R A    + R            F +G  E+++DP       +   F ID L+ILP+PQ++
Sbjct: 140 RTAYISPSSRV-----------FGRG--ELVDDPKAIAIKYLSSYFIIDLLSILPLPQLV 186

Query: 143 VIFPIRDTGFSTAM-------TFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 195
           V+  I +     ++       T    QY+ R++R Y L+T+    SG++ +  W   A+ 
Sbjct: 187 VLAVIPNVNKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAWN 246

Query: 196 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH-SYVFCNKCFGDYKLLND--- 251
           + LY+ + H+FGALWY  ++E+   CWREA E      +  +++C+   G+  + ND   
Sbjct: 247 LSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYCD---GNSSVRNDFLT 303

Query: 252 -SCPI----STGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLET 306
            SCP        N+T +NFGI+ DAL+SGIV    F KK   C  WGL+ LSA GQ+L T
Sbjct: 304 TSCPFINPDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNT 363

Query: 307 SDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDIST 362
           S  VGE IFA+ + I G+VLF  LIG MQ    S T R  ++  + R  + W   + +  
Sbjct: 364 SKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPD 423

Query: 363 FVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSL 422
            +R +IR  ++        +  ++L+ +LP D  + +K HF  +LL ++  FE  ++  L
Sbjct: 424 DLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLL 483

Query: 423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQ---EDGNYC 478
           D +C  LKPV ++E +  I EG+ + EMLFV+ G++ S  +     G       +  ++C
Sbjct: 484 DAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFC 543

Query: 479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ------- 531
           GE+++ WA +  SS  H PISTRT+ A T VE F L  D+LK   +  RR +        
Sbjct: 544 GEDLLTWALDPQSS-SHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQLQHTF 602

Query: 532 ----------SVSFLQLFWR 541
                       SF+Q  WR
Sbjct: 603 RFYSVQWRTWGASFIQAAWR 622

Putative cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2

 Score =  303 bits (776), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 280/526 (53%), Gaps = 36/526 (6%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK +LLL+V+A+  DP FFYIP +K E  C++ +  L   A V R+ +D   ++H+  + 
Sbjct: 84  NKIFLLLSVVALAFDPLFFYIPYVKPERFCLNLDKKLQTIACVFRTFIDAFYVVHMLFQF 143

Query: 87  READKKENQRKKFKHLWQQLKNFKKGG-REVLEDPMVR-MWMLFFIDGLAILPIPQVLV- 143
                          +      F +G   E  +D  +R +   F ID L+ILPIPQV+V 
Sbjct: 144 HTG-----------FITPSSSGFGRGELNEKHKDIALRYLGSYFLIDLLSILPIPQVVVL 192

Query: 144 -IFP-IRDTGFSTAMTFF----VLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVL 197
            I P +R      A          QY+ R+ R Y LF +    SG++ +  W   A  + 
Sbjct: 193 AIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTETAWAGAALNLF 252

Query: 198 LYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKL-LNDSCPI- 255
           LY+ + H+FG+ WY  +IE+   CWREA       +H+Y++C+    D +L LN SCP+ 
Sbjct: 253 LYMLASHVFGSFWYLISIERKDRCWREACAKIQNCTHAYLYCSPTGEDNRLFLNGSCPLI 312

Query: 256 ---STGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGE 312
                 N+T +NFGI+ DALQSG+V    FPKK   C  WGL+ LSA GQ+L+TS   GE
Sbjct: 313 DPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGE 372

Query: 313 NIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKI 368
            IFAI + I G+VLF  LIG M    QS T R  ++  K R  + W   + +   +R +I
Sbjct: 373 IIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRI 432

Query: 369 REAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGC 428
           R+ ++        +  ++L+S LP D  K +K H    LL ++  F+  +D  LD LC  
Sbjct: 433 RKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCAR 492

Query: 429 LKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQED---GNYCGEEIID 484
           LK V ++E++ I+ EGE + +MLF++ G  IS  +     G     D   G++CG +++ 
Sbjct: 493 LKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCG-DLLT 551

Query: 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
           WA +  SS    PIS+RT+ A T VEGF L  D+LK     +RR +
Sbjct: 552 WALDPLSS--QFPISSRTVQALTEVEGFLLSADDLKFVATQYRRLH 595

Probable cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2

 Score =  300 bits (769), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 292/556 (52%), Gaps = 55/556 (9%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK +L   V+A+ +DP FFYIP +     C+  +  L I A+++R+++D   ++HI  + 
Sbjct: 80  NKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQF 139

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDP----MVRMWMLFFIDGLAILPIPQVL 142
           R A           ++    + F +G  E+++D     +  +   F ID L+ILP+PQ++
Sbjct: 140 RTA-----------YIAPSSRVFGRG--ELVDDAKAIALKYLSSYFIIDLLSILPLPQIV 186

Query: 143 VIFPIRDTGFSTAMTF-------FVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 195
           V+  I       ++          + QY+ R++R Y L+T+    SG++ +  W   A+ 
Sbjct: 187 VLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAWN 246

Query: 196 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFC-NKCFGDYKLLNDSCP 254
           + LY+ + H+FGALWY  ++E+   CW+EA E   G +  +++C N        L  SCP
Sbjct: 247 LSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVSNNFLTTSCP 306

Query: 255 I----STGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDV 310
                   N+T +NFGI+ DAL+SG+V    F KK   C  WGL+ LSA GQ+L+TS  V
Sbjct: 307 FLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFV 366

Query: 311 GENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRA 366
           GE IFAI + I G+VLF  LIG MQ    S T R  ++  + R  + W   + +   +R 
Sbjct: 367 GEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRK 426

Query: 367 KIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLC 426
           +IR  ++        +  ++L+ +LP D  + +K H   +LL ++  FE  ++  LD +C
Sbjct: 427 RIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVC 486

Query: 427 GCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGLKRQEDGNYCGEEI 482
             L+PV ++E + +I EG+ + EMLFV+ G++   +    +S        +  ++CGE++
Sbjct: 487 DRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDL 546

Query: 483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ----------- 531
           + WA +  SS  H PISTRT+ A T VE F L  ++LK   +  RR +            
Sbjct: 547 LPWALDPQSS-SHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYS 605

Query: 532 ------SVSFLQLFWR 541
                 SVSF+Q  WR
Sbjct: 606 VQWRTWSVSFIQAAWR 621

Probable cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 288/534 (53%), Gaps = 44/534 (8%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++   ++A+ +DP F Y+P + D+ KC+  +  L I  T IR+++D   L H++   
Sbjct: 115 NKLFVASCILAVSVDPLFLYLPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRF 174

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDP--MVRMWM--LFFIDGLAILPIPQVL 142
           R A    + R            F +G  E++ DP  + + ++   F ID L++LP+PQ++
Sbjct: 175 RTAYVAPSSRV-----------FGRG--ELVIDPAQIAKRYLQQYFIIDLLSVLPVPQII 221

Query: 143 V---IFPIRDTGF---STAMTFFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 195
           V   ++  R         A+ + VL QY+ R +R Y L ++    +GV A+  W   A+Y
Sbjct: 222 VWRFLYTSRGANVLATKQALRYIVLVQYIPRFLRMYPLSSELKRTAGVFAETAWAGAAYY 281

Query: 196 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFC-NKCFGDYKLLND--- 251
           +LLY+ + H+ GALWY  A+E+  DCW +A  N+   + +++FC N+    Y   ++   
Sbjct: 282 LLLYMLASHIVGALWYLLALERNNDCWSKACHNNQNCTRNFLFCGNQNMKGYAAWDNIKV 341

Query: 252 -----SCPISTGNTTR--YNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDL 304
                 CP++        ++FGIY  AL SGIV    F  K   CL WGLQ LS  GQ L
Sbjct: 342 SYLQLKCPVNVPEDEEPPFDFGIYLRALSSGIVSSKNFVSKYFFCLWWGLQNLSTLGQGL 401

Query: 305 ETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDI 360
           ETS   GE IF+I + I G++LF  LIG MQ    S T R  ++  K R  + W H + +
Sbjct: 402 ETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRML 461

Query: 361 STFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDY 420
              +R ++R   +   L    +  ++LV +LP D  + +K H    L+ ++  FEN ++ 
Sbjct: 462 PPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDER 521

Query: 421 SLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQ---EDGN 476
            LD +C  LKP  F+E++ ++ EG+ ++EMLF++ G++ S+ +     G   +   ++G+
Sbjct: 522 LLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGD 581

Query: 477 YCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
           +CG+E++ WA +  S   +LP STRT+ A T VE F L  DELK   +  RR +
Sbjct: 582 FCGDELLTWALDPKSG-SNLPSSTRTVKALTEVEAFALIADELKFVASQFRRLH 634

Probable cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1

 Score =  293 bits (749), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 178/533 (33%), Positives = 283/533 (53%), Gaps = 43/533 (8%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++   ++A+ +DP F Y+P +KD  KCI  +  L I AT +R+++D   L H++   
Sbjct: 115 NKLFVTSCILAVSVDPLFLYLPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRF 174

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDP--MVRMWM--LFFIDGLAILPIPQVL 142
           R A    + R            F +G  E++ DP  + + ++   F ID L++LP+PQ++
Sbjct: 175 RTAFVAPSSRV-----------FGRG--ELVIDPAQIAKRYLQQYFIIDFLSVLPLPQIV 221

Query: 143 V-IFPIRDTGFSTAMT------FFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 195
           V  F     G S   T        ++QY+ R IR Y L ++    +GV A+  W   A+Y
Sbjct: 222 VWRFLYISKGASVLATKRALRSIILVQYIPRFIRLYPLSSELKRTAGVFAETAWAGAAYY 281

Query: 196 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH-SYVFCNK----CFGDYKLLN 250
           +LLY+ + H+ GA+WY  A+E+   CW +   N +   H +++FC       +  +  + 
Sbjct: 282 LLLYMLASHIVGAIWYLLALERYNGCWTKVCSNSSLDCHRNFLFCGNEKMDGYAAWTTIK 341

Query: 251 DS-----CPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLE 305
           DS     CP++T +   ++FGIY  AL SGIV    F  K   CL WGLQ LS  GQ LE
Sbjct: 342 DSVLQLNCPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLE 401

Query: 306 TSDDVGENIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDIS 361
           TS   GE IF+I + I G++LF  LIG M    QS T R  ++  K R  + W H + + 
Sbjct: 402 TSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLP 461

Query: 362 TFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYS 421
             +R ++R   +   L    +  ++LV +LP D  + +K H    L+ ++  FEN ++  
Sbjct: 462 PELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERL 521

Query: 422 LDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGLKRQEDGNY 477
           LD +C  LKP  ++E + ++ EG+ ++EMLF++ G++   +    +S        ++G++
Sbjct: 522 LDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDF 581

Query: 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
           CGEE++ WA +  S   +LP STRT  A T VE F L  DELK   +  RR +
Sbjct: 582 CGEELLTWALDPKSG-SNLPSSTRTAKALTEVEAFALIADELKFVASQFRRLH 633

Putative cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1

 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 282/535 (52%), Gaps = 47/535 (8%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++   ++++ +DPFFFY+P +  E KC+  +  L ITA+ +R+ +D   L H++ +L
Sbjct: 100 NKLFVASCILSVFVDPFFFYLPVINAESKCLGIDRKLAITASTLRTFIDVFYLAHMALQL 159

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDPM------VRMWMLFFIDGLAILPIPQ 140
           R A           ++    + F +G  E++ DP       ++ W  F ID L++LP+PQ
Sbjct: 160 RTA-----------YIAPSSRVFGRG--ELVIDPAQIAKRYLQRW--FIIDFLSVLPLPQ 204

Query: 141 VLVIFPIRDTGFS------TAMTFFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFA 193
           ++V   ++ +  S       A+ F VL QY+ R +R   L ++    +GV A+  W   A
Sbjct: 205 IVVWRFLQSSNGSDVLATKQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGAA 264

Query: 194 FYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFC-NKCFGDYKLLNDS 252
           +Y+LLY+ + H+ GA WY  A+E+   CW+EA  +    S  +++C N+    Y + N +
Sbjct: 265 YYLLLYMLASHIVGAFWYLLALERNDACWQEACIDAGNCSTDFLYCGNQNMDGYAVWNRA 324

Query: 253 --------CPIS-TGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQD 303
                   C      N   ++FGIY  AL SGIV    F  K   CL WGLQ LS  GQ 
Sbjct: 325 KESVLKSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLSTLGQG 384

Query: 304 LETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKD 359
           LETS    E IF+I + I G++LF  LIG MQ    S T R  ++  K R  + W H + 
Sbjct: 385 LETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRM 444

Query: 360 ISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWED 419
           +   +R ++R   +   L    +  + LV +LP D  + +K H    L+ ++  F++ +D
Sbjct: 445 LPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDD 504

Query: 420 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGLKRQEDG 475
             LD +C  LKP  F+E T ++ EG+ + EMLF++ G++   +    +S        ++G
Sbjct: 505 KLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEG 564

Query: 476 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
            +CGEE++ WA +  S   +LP STRT+ A T VE F L ++ELK   +  RR +
Sbjct: 565 EFCGEELLTWALDPKSGV-NLPSSTRTVKALTEVEAFALTSEELKFVASQFRRLH 618

Probable cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1

 Score =  265 bits (676), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 282/556 (50%), Gaps = 60/556 (10%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDE-IKCIHCNDTLGITATVIRSILDFLKLLHISSE 85
           N+ +++  ++A+ +DP FFY+P + +    CI  +  L +T T +R+I+D   L  ++ +
Sbjct: 102 NRLFVISCILAVSVDPLFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQ 161

Query: 86  LREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMV----RMWMLFFIDGLAILPIPQV 141
            R A           ++    + F +G  E++ DP       +   F +D LA+LP+PQ+
Sbjct: 162 FRTA-----------YIAPSSRVFGRG--ELVIDPAKIAERYLTRYFVVDFLAVLPLPQI 208

Query: 142 LV-----------IFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWG 190
            V           + P +    +  +   ++QY+ R +R   L ++  + +G  A+  W 
Sbjct: 209 AVWKFLHGSKGSDVLPTK----TALLNIVIVQYIPRFVRFIPLTSELKKTAGAFAEGAWA 264

Query: 191 IFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGR--SHSYVFCNKCF---GD 245
             A+Y+L Y+ + H+ GA WY  ++E+   CWR A +           ++C   F   G+
Sbjct: 265 GAAYYLLWYMLASHITGAFWYMLSVERNDTCWRFACKVQPDPRLCVQILYCGTKFVSSGE 324

Query: 246 YK-------LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLS 298
            +       LL  +C  +  + +++N+GIY  A+ SGIV  T F  K   CL WGLQ LS
Sbjct: 325 TEWIKTVPELLKSNCS-AKADDSKFNYGIYGQAISSGIVSSTTFFSKFCYCLWWGLQNLS 383

Query: 299 AFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHW 354
             GQ L+TS   GE +F+I + I G++LF  LIG MQ    S T R  ++  K R  + W
Sbjct: 384 TLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQW 443

Query: 355 KHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKF 414
            H + +   +R ++R   +   L    +  +++V  LP D  + +K H   NL+ ++  F
Sbjct: 444 MHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLF 503

Query: 415 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGLK 470
            N ++  LD +C  LKP  F+E T I+ EG+ ++EM+F++ G++   +    +S      
Sbjct: 504 ANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRG 563

Query: 471 RQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF- 529
             ++G++CGEE++ WA +  +   +LP STRT+ A T VE F L+ +ELK   +  RR  
Sbjct: 564 LLKEGDFCGEELLTWALDPKAG-SNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLH 622

Query: 530 ----NQSVSFLQLFWR 541
                Q+  F    WR
Sbjct: 623 SRQVQQTFRFYSQQWR 638

Putative cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2

 Score =  261 bits (668), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 277/555 (49%), Gaps = 59/555 (10%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           N+ +++  ++A+ +DP FFY+P + +   CI  +  L +T T +R+I+D   L  ++ + 
Sbjct: 109 NRMFVISCILAVSVDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQF 168

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMV----RMWMLFFIDGLAILPIPQVL 142
           R A           ++    + F +G  E++ DP       +   F +D LA+LP+PQ+ 
Sbjct: 169 RTA-----------YIAPSSRVFGRG--ELVIDPAKIAERYLTRYFIVDFLAVLPLPQIA 215

Query: 143 V-----------IFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGI 191
           V           + P +       +T    QY+ R +R   L ++  + +G  A+  W  
Sbjct: 216 VWKFLHGSKGTDVLPTKQALLHIVIT----QYIPRFVRFIPLTSELKKTAGAFAEGAWAG 271

Query: 192 FAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH--SYVFCNKCFGDYK-- 247
            A+Y+L Y+ + H+ GA WY  ++E+   C R A +           ++C       +  
Sbjct: 272 AAYYLLWYMLASHITGAFWYMLSVERNDTCLRSACKVQPDPKVCVQILYCGSKLMSSRET 331

Query: 248 --------LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSA 299
                   L  ++C  +  + +++N+GIY  A+ SGIV  T F  K   CL WGLQ LS 
Sbjct: 332 DWIKSVPDLFKNNCS-AKSDESKFNYGIYSQAVSSGIVSSTTFFSKFCYCLWWGLQNLST 390

Query: 300 FGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWK 355
            GQ L+TS   GE +F+I + + G++LF  LIG MQ    S T R  ++  K R  + W 
Sbjct: 391 LGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWM 450

Query: 356 HFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 415
           H + +   +R ++R   +   L    +  +++V  LP D  + +K H   NL+ ++  F 
Sbjct: 451 HHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFA 510

Query: 416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGLKR 471
           N ++  LD +C  LKP  ++E T I+ EG+ ++EMLF++ G++   +    +S       
Sbjct: 511 NMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGL 570

Query: 472 QEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN- 530
            ++G++CGEE++ WA +  +   +LP STRT+ A T VE F L+ +ELK   +  RR + 
Sbjct: 571 LKEGDFCGEELLTWALDPKAG-SNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHS 629

Query: 531 ----QSVSFLQLFWR 541
               Q+  F    WR
Sbjct: 630 RQVQQTFRFYSQQWR 644

Putative cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWD2|CNG12_ARATH Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2

 Score =  246 bits (629), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/559 (30%), Positives = 282/559 (50%), Gaps = 53/559 (9%)

Query: 24  AIEN--KRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLH 81
            +EN  K  LL  V+A+ +DP F +IP +  +  C   + TL     VIR+ +D   ++H
Sbjct: 36  TLENWRKTVLLACVVALAIDPLFLFIPLIDSQRFCFTFDKTLVAVVCVIRTFIDTFYVIH 95

Query: 82  ISSEL-READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQ 140
           I   L  E     +Q      +    K   K           R+   F +D +++LPIPQ
Sbjct: 96  IIYYLITETIAPRSQASLRGEIVVHSKATLK----------TRLLFHFIVDIISVLPIPQ 145

Query: 141 VLVI--FPIRDTGFSTAMTFFVL--QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYV 196
           V+V+   P+  +  S  +  +++  QY+ R+IR Y L+ +     G +A++ W   A  +
Sbjct: 146 VVVLTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKWAGAALNL 205

Query: 197 LLYLQSGHMFGALWYYYAIEKATDCWREASENHT--GRSHSYVFCNKCFGD-YKLLNDSC 253
            LY+   ++FGA WY  +IE+ + CWR A    +    + + + C +   D  + LN SC
Sbjct: 206 FLYMLHSYVFGAFWYLSSIERKSKCWRAACARTSDCNLTVTDLLCKRAGSDNIRFLNTSC 265

Query: 254 PI----STGNTTRYNFGIYKDALQSGI--VRETYFPKKLLRCLHWGLQKLSAFGQDLETS 307
           P+       N+T ++FG+Y DAL+SG+  V+   FP+K + C  WGL+ +SA GQ+LETS
Sbjct: 266 PLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETS 325

Query: 308 DDVGENIFAIWMTIYGVVLFVFLIGR----MQSETTRAHKINQKLRQIKHWKHFKDISTF 363
           +  GE  FAI + + G++LF  LIG     +QS TTR  ++ +K R  + W  ++ I  +
Sbjct: 326 NSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEY 385

Query: 364 VRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWED-YSL 422
           ++ +IR  +            ++L+  LP D   + K +   ++L ++      +D + L
Sbjct: 386 LKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLL 445

Query: 423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQ----EDGNYC 478
           + +C  +K VF+   + I+ EG  + EML V  G++   + S  +G++      +DG+ C
Sbjct: 446 EAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDIC 505

Query: 479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQL 538
           GE + +           LP STRT++  T VEGF L  D++K  IA H         L +
Sbjct: 506 GELLFN--------GSRLPTSTRTVMTLTEVEGFILLPDDIKF-IASH---------LNV 547

Query: 539 FWRFKTFKQMQMKRRQSRS 557
           F R K  +  ++  +Q RS
Sbjct: 548 FQRQKLQRTFRLYSQQWRS 566

Probable cyclic nucleotide-gated ion channel.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
224118210	709	predicted protein [Populus trichocarpa]	0.915	0.722	0.353	1e-87
224135235	708	predicted protein [Populus trichocarpa]	0.923	0.728	0.345	7e-87
15238657	716	cyclic nucleotide-gated ion channel 1 [A	0.883	0.689	0.362	3e-86
297796139	716	hypothetical protein ARALYDRAFT_918383 [	0.880	0.687	0.357	9e-86
356516029	715	PREDICTED: cyclic nucleotide-gated ion c	0.917	0.717	0.352	1e-85
356509281	715	PREDICTED: cyclic nucleotide-gated ion c	0.874	0.683	0.366	1e-85
6969231	708	cyclic nucleotide-gated calmodulin-bindi	0.872	0.689	0.361	7e-85
225462733	709	PREDICTED: cyclic nucleotide-gated ion c	0.872	0.688	0.360	2e-83
356551532	718	PREDICTED: cyclic nucleotide-gated ion c	0.874	0.681	0.357	3e-83
255545024	838	Cyclic nucleotide-gated ion channel, put	0.917	0.612	0.342	2e-82

>gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 306/568 (53%), Gaps = 56/568 (9%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  + T+ ITA+V+RS  D   +LHI  + 
Sbjct: 91  NKIFVLSCLIAVSLDPLFFYVPVIDDGKKCLSLDRTMEITASVLRSFTDIFYILHIIFQF 150

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-ED--PMVRMWM--LFFIDGLAILPIPQV 141
           R      + R                GR VL ED   + + ++   F ID LA+LP+PQV
Sbjct: 151 RTGFIAPSSR--------------VFGRGVLVEDTWAIAKRYLSSYFLIDILAVLPLPQV 196

Query: 142 LVIFPIRDTGFSTAMT-------FFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
           +++  IR    S  +          + QY+ R +R Y L+ + +  SG++ +  W   AF
Sbjct: 197 VILIIIRKMAGSRNLNTKNLLKFVVIFQYVPRFMRIYPLYKE-VTTSGILTETAWAGAAF 255

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKC--FGDYKLLNDS 252
            + LY+ + H+ GA WY ++IE+ T+CWR+A   H G S   +FC+     G+   L++ 
Sbjct: 256 NLFLYMLASHVLGAFWYLFSIERETNCWRQACGKHAGCSRELLFCDTAGSVGNLSFLDNY 315

Query: 253 CPISTGNTTRYNFGIYKDALQSGIVRETY-FPKKLLRCLHWGLQKLSAFGQDLETSDDVG 311
           CPI T N T +NFGI+ DALQSG+V  +  FP+K   C  WGLQ LS+ GQ+L+TS  V 
Sbjct: 316 CPIITPNETVFNFGIFLDALQSGVVSSSMDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVW 375

Query: 312 ENIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAK 367
           E  FA++++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +
Sbjct: 376 EICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRIKRRDAEQWMSHRLLPDSIRER 435

Query: 368 IREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCG 427
           IR  ++        +  + LV +LP D  + +K H    LL ++  FE  ++  LD LC 
Sbjct: 436 IRRYEQYRWQETRGVDEEMLVHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCD 495

Query: 428 CLKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEII 483
            LKPV ++E + I+ EG+ + EMLFV+ G+ ++I +     G    E    G++CGEE++
Sbjct: 496 RLKPVLYTEESYIVREGDPVDEMLFVMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELL 555

Query: 484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ------------ 531
            WA +  SS  +LPISTRT+   T VE F L  D+LK   +  RR +             
Sbjct: 556 TWALDPQSS-SNLPISTRTVRTITEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQ 614

Query: 532 -----SVSFLQLFWRFKTFKQMQMKRRQ 554
                +  F+Q  WR  + K+++   RQ
Sbjct: 615 QWRTWAACFIQAAWRRYSKKKLEESLRQ 642

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 197/571 (34%), Positives = 309/571 (54%), Gaps = 55/571 (9%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  VIA+ LDP FFY+P + D+  C+  ++T+ ITA+V+RS  D   +LHI  E 
Sbjct: 91  NKIFVLSCVIAVSLDPLFFYVPVIDDKKNCLSLDNTMEITASVLRSFTDIFYILHIIFEF 150

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-ED--PMVRMWM--LFFIDGLAILPIPQV 141
           R      + R                GR VL ED   + + ++   F ID LA+LP+PQV
Sbjct: 151 RTGFIAPSSR--------------VFGRGVLVEDTWAIAKRYLSSYFLIDILAVLPLPQV 196

Query: 142 LVIFPIRDTGFSTAMT-------FFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
           +++  I   G S+ +          + QY+ R +R Y L+ + +  SG++ +  W   AF
Sbjct: 197 VILIIIPKMGGSSYLNTKNLLKFVVIFQYVPRFVRIYPLYKE-VTTSGILTETAWAGAAF 255

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNK-CFGDYKLLNDSC 253
            + LY+ + H+ GA WY ++IE+ T+CWR+A   ++G     +FC++   GD   L+  C
Sbjct: 256 NLFLYMLASHILGAFWYLFSIERETNCWRKACGKNSGCKPELLFCDRDVVGDVTFLDGYC 315

Query: 254 PISTGNTTRYNFGIYKDALQSGIVRETY-FPKKLLRCLHWGLQKLSAFGQDLETSDDVGE 312
           PI T N T +NFGI+ DALQSG+V  +  FP+K   C  WGLQ LS+ GQ+L+TS  V E
Sbjct: 316 PIQTPNETIFNFGIFLDALQSGVVLSSMDFPQKFFYCFWWGLQNLSSLGQNLQTSTYVWE 375

Query: 313 NIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKI 368
             FA++++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   ++ +I
Sbjct: 376 ICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRIKRRDAEQWMSHRLLPDNIKERI 435

Query: 369 REAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGC 428
           R  ++        +  ++LV +LP D  + +K H    LL ++  FE  ++  LD +C  
Sbjct: 436 RRYEQYRWQETRGVDEETLVHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDR 495

Query: 429 LKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIID 484
           LKP  ++E + I+ EG+ + EMLFV+ G+ +++ +     G    E    G++CGEE++ 
Sbjct: 496 LKPALYTEESYIVREGDPVDEMLFVMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLT 555

Query: 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ------------- 531
           WA +  SS  +LPISTRT+   T VE F L  D+LK   +  RR +              
Sbjct: 556 WALDPHSS-SNLPISTRTVRTITEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQ 614

Query: 532 ----SVSFLQLFWRFKTFKQMQMKRRQSRSH 558
               +  F+Q  WR  + K+++   RQ  + 
Sbjct: 615 WRTWAACFIQAAWRRYSKKKLEESLRQEENR 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana]

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 296/521 (56%), Gaps = 27/521 (5%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITA+V+RS  D   +LHI  + 
Sbjct: 96  NKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQF 155

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFP 146
           R      + R   + +  + K      RE+ +  +      F ID LA+LP+PQ++++  
Sbjct: 156 RTGFIAPSSRVFGRGVLVEDK------REIAKRYLSSH---FIIDILAVLPLPQMVILII 206

Query: 147 IRDTGFSTAMT------FFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLY 199
           I     S+++       F V  QY+ R IR Y L+ +    SG++ +  W   AF + LY
Sbjct: 207 IPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLY 266

Query: 200 LQSGHMFGALWYYYAIEKATDCWREASE-NHTGRSHSYVFCN-KCFGDYKLLNDSCPIST 257
           + + H+FGA WY ++IE+ T CW++A E N+       ++C+ +  G    LN+SCPI T
Sbjct: 267 MLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQT 326

Query: 258 GNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAI 317
            NTT ++FGI+ DALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  + E  FA+
Sbjct: 327 PNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAV 386

Query: 318 WMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKR 373
           +++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +IR  ++
Sbjct: 387 FISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQ 446

Query: 374 ENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVF 433
                   +  ++L+S+LP D  + +K H    LL ++  FE  ++  LD LC  L+PV 
Sbjct: 447 YKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVL 506

Query: 434 FSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIIDWAENQ 489
           ++E + I+ EG+ + EMLF++ G+ ++I +     G    E    G++CGEE++ WA + 
Sbjct: 507 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDP 566

Query: 490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
            SS  +LPISTRT+ A   VE F LK D+LK   +  RR +
Sbjct: 567 HSS-SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLH 606

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 187/523 (35%), Positives = 293/523 (56%), Gaps = 31/523 (5%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITA+V+RS  D   ++HI  + 
Sbjct: 96  NKIFVLACIIAVSLDPLFFYVPIIDDTKKCLGIDKKMEITASVLRSFTDVFYIIHIIFQF 155

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWML--FFIDGLAILPIPQVLVI 144
           R      + R            F +G     +  + + ++   F ID LA+LP+PQ++++
Sbjct: 156 RTGFIAPSSRV-----------FGRGVLVEDKQQIAKRYLSSHFIIDILAVLPLPQMVIL 204

Query: 145 FPIRDTGFSTAMT------FFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVL 197
             I     S ++       F V  QY+ R IR Y L+ +    SG++ +  W   AF + 
Sbjct: 205 IVIPHMRGSPSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLF 264

Query: 198 LYLQSGHMFGALWYYYAIEKATDCWREASENHTGRS-HSYVFCNKCF-GDYKLLNDSCPI 255
           LY+ + H+FGA WY ++IE+ T CW++A E        S ++C++   G    LN+SCPI
Sbjct: 265 LYMLASHVFGAFWYLFSIERETVCWKQACEKTNSSCIPSLLYCDREIPGGNAFLNESCPI 324

Query: 256 STGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIF 315
            T NTT ++FGI+ DALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  V E  F
Sbjct: 325 QTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEICF 384

Query: 316 AIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREA 371
           A++++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +IR  
Sbjct: 385 AVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRY 444

Query: 372 KRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKP 431
           ++        +  ++L+S+LP D  + +K H    LL ++  FE  ++  LD LC  L+P
Sbjct: 445 EQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQP 504

Query: 432 VFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIIDWAE 487
           V ++E + I+ EG+ + EMLF++ G+ ++I +     G    E    G++CGEE++ WA 
Sbjct: 505 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWAL 564

Query: 488 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
           +  +S  +LPISTRT+ A   VE F LK D+LK   +  RR +
Sbjct: 565 DPHTS-SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLH 606

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max]

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 302/568 (53%), Gaps = 55/568 (9%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITATV+RS  D   ++HI  + 
Sbjct: 95  NKIFVLSCLIAVSLDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQF 154

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-EDP----MVRMWMLFFIDGLAILPIPQV 141
           R      + R                GR VL ED     M  +   F ID LA+LP+PQV
Sbjct: 155 RTGFIAPSSRV--------------FGRGVLVEDAWAIAMRYLSSYFLIDILAVLPLPQV 200

Query: 142 --LVIFPIRDTGFS----TAMTFFV-LQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
             L+I P      S    T + F V  QY+ R +R   L+ +    SG++ +  W   AF
Sbjct: 201 AILIIIPKLSGSESLNTKTLLKFIVCFQYIPRFLRIIPLYKEVTRTSGILTETAWAGAAF 260

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCN--KCFGDYK-LLND 251
            + LY+ + H+ GA WY ++IE+ T CW++A   ++  + + ++C+  +  G     LN 
Sbjct: 261 NLFLYMLASHVIGAFWYLFSIERETTCWQDACRRNSTCNTTAMYCDNHQVLGTMSAFLNA 320

Query: 252 SCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVG 311
           SCPI   NTT +NFGI+ DALQSG+V    FP+K   C  WGL+ LS+ GQ+L TS  V 
Sbjct: 321 SCPIQDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVW 380

Query: 312 ENIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAK 367
           E  FAI+++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +
Sbjct: 381 EISFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRER 440

Query: 368 IREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCG 427
           IR  ++        +  DSL+ DLP D  + +K H    LL ++  FEN ++  LD +C 
Sbjct: 441 IRRHEQYKWQETRGVDEDSLIRDLPKDLRRDIKRHLCLALLMRVPMFENMDEQLLDAMCD 500

Query: 428 CLKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEII 483
            LKPV ++E + I  EG+ + EMLF++ G+ +++ +     G    E    G++CGEE++
Sbjct: 501 RLKPVLYTEESCIAREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELL 560

Query: 484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ------------ 531
            WA +  SS  +LPISTRT+   + VE F LK D+LK   +  RR +             
Sbjct: 561 TWALDPQSS-SNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQ 619

Query: 532 -----SVSFLQLFWRFKTFKQMQMKRRQ 554
                +  F+Q  WR  + K+++   R+
Sbjct: 620 QWRTWAACFIQAAWRRYSKKKLEESLRE 647

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 289/527 (54%), Gaps = 38/527 (7%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITATV+RS  D   ++HI  + 
Sbjct: 95  NKIFVLSCLIAVSLDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQF 154

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-EDP----MVRMWMLFFIDGLAILPIPQV 141
           R      + R                GR VL ED     M  +   F ID LA+LP+PQV
Sbjct: 155 RTGFIAPSSRV--------------FGRGVLVEDAWAIAMRYLSSYFLIDILAVLPLPQV 200

Query: 142 --LVIFPIRDTGFS----TAMTFFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
             L+I P      S    T + F V  QY+ R +R   L+ +    SG++ +  W   AF
Sbjct: 201 AILIIIPKLSGSESLNTKTLLKFIVFFQYIPRFLRIIPLYKEVTRTSGILTETAWAGAAF 260

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCN--KCFGDYK-LLND 251
            + LY+ + H+ GA WY ++IE+ T CW++    ++  + + ++C+  +  G     LN 
Sbjct: 261 NLFLYMLASHVIGAFWYLFSIERETTCWQDVCRRNSTCNTAAMYCDNHQVLGTMSAFLNA 320

Query: 252 SCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVG 311
           SCPI   NTT +NFGI+ DALQSG+V    FP+K   C  WGL+ LS+ GQ+L TS  V 
Sbjct: 321 SCPIQVQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVW 380

Query: 312 ENIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAK 367
           E  FAI+++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +
Sbjct: 381 EICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRER 440

Query: 368 IREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCG 427
           IR  ++        +  DSL+ DLP D  + +K H    LL ++  FEN ++  LD +C 
Sbjct: 441 IRRHEQYKWQETRGVDEDSLIRDLPKDLRRDIKRHLCLALLMRVPMFENMDEQLLDAMCD 500

Query: 428 CLKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEII 483
            LKPV ++E + I+ EG+ + EMLF++ G+ +++ +     G    E    G++CGEE++
Sbjct: 501 RLKPVLYTEESCIVREGDPVGEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELL 560

Query: 484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
            WA +  SS  +LPISTRT+   + VE F LK D+LK   +  RR +
Sbjct: 561 TWALDPQSS-SNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLH 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum]

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 190/526 (36%), Positives = 294/526 (55%), Gaps = 38/526 (7%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  VIA+ LDP F YIP + ++ KC+  N TL +TA+V+RS  D    LHI+ + 
Sbjct: 90  NKIFVLSCVIAISLDPLFLYIPVIDNDNKCLGLNRTLEVTASVLRSFTDIFYFLHIALQF 149

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVLEDP--MVRMWM--LFFIDGLAILPIPQV- 141
           R      + R            F +G   ++ED   + + ++   F ID LA+LP+PQV 
Sbjct: 150 RTGFIAPSSRV-----------FGRG--VLIEDAWEIAKRYLSTYFLIDILAVLPLPQVV 196

Query: 142 -LVIFP-------IRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFA 193
            L+I P       +       ++ FF  QY+ RV+R Y L+ +    SG++ +  W   A
Sbjct: 197 ILIIIPKLRGSRSLNTKNLLKSVVFF--QYIPRVLRVYPLYREVTRTSGILTETAWAGAA 254

Query: 194 FYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK-LLNDS 252
           F + LY+ + H+ GA WY ++IE+ T CW++A  N +   H+ ++C+     +K LLN S
Sbjct: 255 FNLFLYMLASHVLGAFWYLFSIERETTCWKQACGNSSPCHHASLYCDDDHTKFKTLLNSS 314

Query: 253 CPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGE 312
           CPI T N T ++FGI+  ALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  + E
Sbjct: 315 CPIETPNATLFDFGIFLGALQSGVVGPMDFPQKFFYCFWWGLQNLSSLGQNLQTSTFIWE 374

Query: 313 NIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKI 368
             FA++++I G+VLF FLIG M    QS T R  ++  K R  + W   + +   +R +I
Sbjct: 375 MCFAVFISIAGLVLFAFLIGNMQTCLQSSTLRLEEMRVKRRDAEQWMSHRLLPENLRERI 434

Query: 369 REAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGC 428
           R  ++        +  ++L+ +LP D  + +K H    LL ++  FE  ++  LD LC  
Sbjct: 435 RCYEQYRWQETRGVDEENLIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDH 494

Query: 429 LKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIID 484
           LKPV F++ + I+ EG+ +  MLFV+ G+ +S+ +     G    E    G++CGEE++ 
Sbjct: 495 LKPVLFTKDSFIVREGDPVDAMLFVMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLT 554

Query: 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
           WA + +SS  +LPISTRT  A + VE F L  D+LK   +  RR +
Sbjct: 555 WALDPNSS-TNLPISTRTAQALSEVEAFALVADDLKLVASQFRRLH 599

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 289/524 (55%), Gaps = 36/524 (6%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFYIP +    KC+  +++L ITA+V+RS  D   +LHI  + 
Sbjct: 93  NKIFVLSCIIAVSLDPLFFYIPVIDKLKKCLSLDESLQITASVLRSFTDIFYILHIIFQF 152

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-ED--PMVRMWM--LFFIDGLAILPIPQV 141
           R      + R                GR VL ED   + R ++   F ID LA+LP+PQV
Sbjct: 153 RTGFIAPSSRV--------------FGRGVLVEDSWAIARRYLSSYFLIDILAVLPLPQV 198

Query: 142 LVIFPIRDTGFSTAMT------FFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
           ++   I   G S  M       F V  QY+ RV+R   L+ +    SG++ +  W   AF
Sbjct: 199 VIWIIIPKLGGSKYMNTKRLLKFVVFFQYIPRVLRVRPLYKEVTRTSGILTETAWAGAAF 258

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCP 254
            + LY+ + H+ GA WY +AI++ T CW +A  N T    S ++C K   +  L N SCP
Sbjct: 259 NLFLYMLASHVLGAFWYLFAIDRETTCWTKACGNDTSCIDSSLYC-KGTVNTTLFNASCP 317

Query: 255 ISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENI 314
           +   NTT ++FGI  DALQSG+V  T FP+K   C  WGLQ LS+ GQ+L+TS  V E  
Sbjct: 318 VIEPNTTVFDFGILLDALQSGVVESTDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEIC 377

Query: 315 FAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIRE 370
           FA++++I G+VLF FLIG M    QS T R  ++  K R  + W   + +   +R +IR 
Sbjct: 378 FAVFISISGLVLFSFLIGNMQTYLQSTTIRLEEMRVKRRDAEQWMSHRLLPESLRERIRR 437

Query: 371 AKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLK 430
            ++        +   +L+ +LP D  + +K H    LL ++  FE  ++  +D +C  LK
Sbjct: 438 YEQYKWQETRGVDEQNLLINLPKDLRRDIKRHLCLALLRRVPMFEKMDEQLMDAMCDRLK 497

Query: 431 PVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGLKRQEDGNYCGEEIIDWA 486
           P  ++E + I+ EG+ + EMLFV+ G++S  +    ++  +     + G++CGEE++ WA
Sbjct: 498 PALYTEDSYIVREGDPVDEMLFVMRGKLSTMTTNGGRTGFLNSDYLKAGDFCGEELLTWA 557

Query: 487 ENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
            +  S+  +LPISTRT++A + VE F L  D+LK   +  RR +
Sbjct: 558 LDPHST-SNLPISTRTVLALSEVEAFALMADDLKFVASQFRRLH 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max]

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/529 (35%), Positives = 296/529 (55%), Gaps = 40/529 (7%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++LL VIA+ LDP FFY+P ++D  KC+  +  + ITATV+RS  D L ++H+  + 
Sbjct: 96  NKIFVLLCVIAVSLDPLFFYVPVIEDAKKCLSLDSKMEITATVLRSFSDALYIIHMIFQF 155

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-ED--PMVRMWM--LFFIDGLAILPIPQV 141
           R      + R                GR VL ED   + R ++   F ID LA+LP+PQV
Sbjct: 156 RTGFIAPSSRV--------------FGRGVLVEDSWAIARRYLSSYFIIDILAVLPLPQV 201

Query: 142 LVIFPIRD-TGFSTAMT-----FFV-LQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
           +++  I + +GF +  T     F V LQY+ R++R   L+ +    SG++ +  W   AF
Sbjct: 202 VILVIIPEMSGFKSLNTKNLLKFVVFLQYVPRLLRIIPLYNEVTRTSGILTETAWAGAAF 261

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASE-NHTGRSHSYVFCNKCFGDYK----LL 249
            + LY+ + H+ GA WY ++IE+ T CW+EA + N T  + + ++CN   G        L
Sbjct: 262 NLFLYMLASHVVGAFWYLFSIERETTCWQEACQRNTTVCNKADMYCNDYLGGLSKISAFL 321

Query: 250 NDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDD 309
           + SCPI   +   ++FGI+ DALQSG+V    FP+K   C  WGL+ LS+ GQ+L TS  
Sbjct: 322 STSCPIQNEDKKLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTY 381

Query: 310 VGENIFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVR 365
           V E  FA+++++ G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R
Sbjct: 382 VWEISFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLR 441

Query: 366 AKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHL 425
            +IR  ++        +  D+L+ +LP D  + +K H    LL ++  FE  ++  LD +
Sbjct: 442 ERIRRYEQYRWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAM 501

Query: 426 CGCLKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEE 481
           C  LKPV ++E + I+ EG+ + EMLF++ G+ +++ +     G    E    G++CGEE
Sbjct: 502 CDLLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEE 561

Query: 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
           ++ WA +  SS  +LP STRT+   + VE F LK D+LK   +  RR +
Sbjct: 562 LLTWALDPHSSP-NLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLH 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 300/566 (53%), Gaps = 53/566 (9%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + I A+V+R   D   ++HI  + 
Sbjct: 95  NKIFVLSCLIAVSLDPLFFYVPVINDIEKCLGLDSRMEIVASVLRWFTDIFYIIHIIFQF 154

Query: 87  READKKENQRKKFKHLWQQLKNFKKGGREVL-EDP--MVRMWM--LFFIDGLAILPIPQV 141
           R      + R                GR VL ED   + + ++   F ID LA+LP+PQV
Sbjct: 155 RTGFIAPSSRV--------------FGRGVLVEDTWEIAKRYLSSYFLIDILAVLPLPQV 200

Query: 142 --LVIFP----IRDTGFSTAMTFFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
             L+I P     R       + F VL QY+ R +R Y L+ +    SG++ +  W   AF
Sbjct: 201 VILIIIPKMKGSRSLNTKNLLKFVVLFQYIPRFMRIYPLYKEVTRTSGILTETAWAGAAF 260

Query: 195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK-LLNDSC 253
            + LY+ + H+ GA WY  +IE+ T CW++A ++H G     ++C    G  K  L+ +C
Sbjct: 261 NLFLYMLASHVLGAFWYLVSIERETVCWKKACDDHIGCVRDSLYCGNQAGVNKTFLDGAC 320

Query: 254 PISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGEN 313
           P+   NT  +NFGI+ DALQSG+V    FPKK   C  WGL+ LS+ GQ+LETS  V E 
Sbjct: 321 PVQIPNTEIFNFGIFLDALQSGVVATHDFPKKFFYCFWWGLRNLSSLGQNLETSTFVWEI 380

Query: 314 IFAIWMTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIR 369
            FA+ ++I+G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +IR
Sbjct: 381 CFAVSISIFGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRERIR 440

Query: 370 EAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCL 429
             ++        +  ++LV +LP D  + +K H    LL ++  FE  ++  LD +C  L
Sbjct: 441 RHEQYKWQETRGVDEENLVCNLPRDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRL 500

Query: 430 KPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIIDW 485
           KP  ++E + I+ EG+ + EMLF++ G+ +++ +     G    E    G++CGEE++ W
Sbjct: 501 KPALYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTW 560

Query: 486 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ-------------- 531
           A + +SS  +LPISTRT+   T VE F L  D+LK   +  RR +               
Sbjct: 561 ALDPNSS-SNLPISTRTVQTLTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQW 619

Query: 532 ---SVSFLQLFWRFKTFKQMQMKRRQ 554
              +  F+Q  WR  + K+++   RQ
Sbjct: 620 RTWAACFIQAAWRRYSKKKLEESLRQ 645

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
TAIR|locus:2163776	716	CNGC1 "cyclic nucleotide gated	0.906	0.708	0.364	1e-82
TAIR|locus:2039084	706	CNGC3 "cyclic nucleotide gated	0.894	0.708	0.358	8.1e-76
TAIR|locus:2125206	696	CNGC13 "cyclic nucleotide-gate	0.887	0.712	0.350	2.7e-75
TAIR|locus:2061401	747	CNGC6 "cyclic nucleotide-gated	0.871	0.651	0.325	1.4e-70
TAIR|locus:2118836	733	CNGC9 "cyclic nucleotide gated	0.872	0.665	0.327	2.1e-68
TAIR|locus:2174448	717	CNGC5 "cyclic nucleotide gated	0.894	0.697	0.317	1.2e-63
TAIR|locus:2200502	738	CNGC7 "cyclic nucleotide gated	0.924	0.700	0.295	7.1e-61
TAIR|locus:2013139	753	CNGC8 "cyclic nucleotide gated	0.894	0.664	0.295	2.4e-60
TAIR|locus:2039114	649	CNGC12 "cyclic nucleotide-gate	0.864	0.744	0.311	3.9e-60
TAIR|locus:2039099	621	CNGC11 "cyclic nucleotide-gate	0.903	0.813	0.309	1.3e-59

TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 196/538 (36%), Positives = 305/538 (56%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITA+V+RS  D   +LHI  + 
Sbjct:    96 NKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQF 155

Query:    87 READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQ--VLVI 144
             R      + R   + +  + K      RE+ +  +      F ID LA+LP+PQ  +L+I
Sbjct:   156 RTGFIAPSSRVFGRGVLVEDK------REIAKRYLSSH---FIIDILAVLPLPQMVILII 206

Query:   145 FP-IR-DTGFSTA-MTFFVL--QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLY 199
              P +R  +  +T  M  F++  QY+ R IR Y L+ +    SG++ +  W   AF + LY
Sbjct:   207 IPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLY 266

Query:   200 LQSGHMFGALWYYYAIEKATDCWREASE-NHTGRSHSYVFCN-KCFGDYKLLNDSCPIST 257
             + + H+FGA WY ++IE+ T CW++A E N+       ++C+ +  G    LN+SCPI T
Sbjct:   267 MLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQT 326

Query:   258 GNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAI 317
              NTT ++FGI+ DALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  + E  FA+
Sbjct:   327 PNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAV 386

Query:   318 WMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKR 373
             +++I G+VLF FLIG MQ    S TTR  ++  K R  + W   + +   +R +IR  ++
Sbjct:   387 FISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQ 446

Query:   374 ENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVF 433
                     +  ++L+S+LP D  + +K H    LL ++  FE  ++  LD LC  L+PV 
Sbjct:   447 YKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVL 506

Query:   434 FSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQE---DGNYCGEEIIDWAENQ 489
             ++E + I+ EG+ + EMLF++ G++ +I +     G    E    G++CGEE++ WA + 
Sbjct:   507 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDP 566

Query:   490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQ 547
              SS  +LPISTRT+ A   VE F LK D+LK   +  RR +      QL   F+ + Q
Sbjct:   567 HSS-SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSK----QLRHTFRYYSQ 619

GO:0005216 "ion channel activity" evidence=IEA

GO:0005261 "cation channel activity" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=IGI

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IGI

GO:0006813 "potassium ion transport" evidence=IGI

GO:0006816 "calcium ion transport" evidence=IGI

TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 193/538 (35%), Positives = 288/538 (53%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK +LLL+V+A+  DP FFYIP +K E  C++ +  L   A V R+ +D   ++H+  + 
Sbjct:    84 NKIFLLLSVVALAFDPLFFYIPYVKPERFCLNLDKKLQTIACVFRTFIDAFYVVHMLFQF 143

Query:    87 READKKENQRKKFKHLWQQLKNFKKGG-REVLEDPMVR-MWMLFFIDGLAILPIPQVLV- 143
                            +      F +G   E  +D  +R +   F ID L+ILPIPQV+V 
Sbjct:   144 HTG-----------FITPSSSGFGRGELNEKHKDIALRYLGSYFLIDLLSILPIPQVVVL 192

Query:   144 -IFP-IRDTGFSTAMTF--FVL--QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVL 197
              I P +R      A     +V+  QY+ R+ R Y LF +    SG++ +  W   A  + 
Sbjct:   193 AIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTETAWAGAALNLF 252

Query:   198 LYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKL-LNDSCPI- 255
             LY+ + H+FG+ WY  +IE+   CWREA       +H+Y++C+    D +L LN SCP+ 
Sbjct:   253 LYMLASHVFGSFWYLISIERKDRCWREACAKIQNCTHAYLYCSPTGEDNRLFLNGSCPLI 312

Query:   256 ---STGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGE 312
                   N+T +NFGI+ DALQSG+V    FPKK   C  WGL+ LSA GQ+L+TS   GE
Sbjct:   313 DPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGE 372

Query:   313 NIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKI 368
              IFAI + I G+VLF  LIG MQ    S T R  ++  K R  + W   + +   +R +I
Sbjct:   373 IIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRI 432

Query:   369 REAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGC 428
             R+ ++        +  ++L+S LP D  K +K H    LL ++  F+  +D  LD LC  
Sbjct:   433 RKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCAR 492

Query:   429 LKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQED---GNYCGEEIID 484
             LK V ++E++ I+ EGE + +MLF++ G  IS  +     G     D   G++CG+ ++ 
Sbjct:   493 LKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLT 551

Query:   485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRF 542
             WA +  SS    PIS+RT+ A T VEGF L  D+LK     +RR +     L+  +RF
Sbjct:   552 WALDPLSSQ--FPISSRTVQALTEVEGFLLSADDLKFVATQYRRLHSKQ--LRHMFRF 605

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=TAS

TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 191/545 (35%), Positives = 297/545 (54%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK +L  +VIA+ +DP FFYIP +  E  C++ +  L I A+V+R+ +D   ++HI  + 
Sbjct:    80 NKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVLRTFIDAFYIIHIVFQF 139

Query:    87 READKKENQRKKFKHLWQQLKNFKKGGREVLEDPM-VRMWML---FFIDGLAILPIPQVL 142
             R A    + R            F +G  E+++DP  + +  L   F ID L+ILP+PQ++
Sbjct:   140 RTAYISPSSRV-----------FGRG--ELVDDPKAIAIKYLSSYFIIDLLSILPLPQLV 186

Query:   143 VIFPIRDTGFSTAM-------TFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 195
             V+  I +     ++       T    QY+ R++R Y L+T+    SG++ +  W   A+ 
Sbjct:   187 VLAVIPNVNKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAWN 246

Query:   196 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH-SYVFCNKCFGDYKLLND--- 251
             + LY+ + H+FGALWY  ++E+   CWREA E      +  +++C+   G+  + ND   
Sbjct:   247 LSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYCD---GNSSVRNDFLT 303

Query:   252 -SCPI----STGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLET 306
              SCP        N+T +NFGI+ DAL+SGIV    F KK   C  WGL+ LSA GQ+L T
Sbjct:   304 TSCPFINPDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNT 363

Query:   307 SDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDIST 362
             S  VGE IFA+ + I G+VLF  LIG MQ    S T R  ++  + R  + W   + +  
Sbjct:   364 SKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPD 423

Query:   363 FVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSL 422
              +R +IR  ++        +  ++L+ +LP D  + +K HF  +LL ++  FE  ++  L
Sbjct:   424 DLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLL 483

Query:   423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQ---EDGNYC 478
             D +C  LKPV ++E +  I EG+ + EMLFV+ G++ S  +     G       +  ++C
Sbjct:   484 DAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFC 543

Query:   479 GEEIIDWA-ENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQ 537
             GE+++ WA + QSSSH   PISTRT+ A T VE F L  D+LK   +  RR +     LQ
Sbjct:   544 GEDLLTWALDPQSSSH--FPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQ--LQ 599

Query:   538 LFWRF 542
               +RF
Sbjct:   600 HTFRF 604

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 175/537 (32%), Positives = 276/537 (51%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK ++   ++A+ +DP F Y+P + D+ KC+  +  L I  T IR+++D   L H++   
Sbjct:   115 NKLFVASCILAVSVDPLFLYLPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRF 174

Query:    87 READKKENQR------------KKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFID-GL 133
             R A    + R            +  K   QQ   F      VL  P + +W   +   G 
Sbjct:   175 RTAYVAPSSRVFGRGELVIDPAQIAKRYLQQY--FIIDLLSVLPVPQIIVWRFLYTSRGA 232

Query:   134 AILPIPQVLVIFPIRDTGFSTAMTFFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIF 192
              +L   Q              A+ + VL QY+ R +R Y L ++    +GV A+  W   
Sbjct:   233 NVLATKQ--------------ALRYIVLVQYIPRFLRMYPLSSELKRTAGVFAETAWAGA 278

Query:   193 AFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFC-NKCFGDY----- 246
             A+Y+LLY+ + H+ GALWY  A+E+  DCW +A  N+   + +++FC N+    Y     
Sbjct:   279 AYYLLLYMLASHIVGALWYLLALERNNDCWSKACHNNQNCTRNFLFCGNQNMKGYAAWDN 338

Query:   247 -KL--LNDSCPISTGNTTR--YNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFG 301
              K+  L   CP++        ++FGIY  AL SGIV    F  K   CL WGLQ LS  G
Sbjct:   339 IKVSYLQLKCPVNVPEDEEPPFDFGIYLRALSSGIVSSKNFVSKYFFCLWWGLQNLSTLG 398

Query:   302 QDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHF 357
             Q LETS   GE IF+I + I G++LF  LIG MQ    S T R  ++  K R  + W H 
Sbjct:   399 QGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHH 458

Query:   358 KDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENW 417
             + +   +R ++R   +   L    +  ++LV +LP D  + +K H    L+ ++  FEN 
Sbjct:   459 RMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENM 518

Query:   418 EDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQ---E 473
             ++  LD +C  LKP  F+E++ ++ EG+ ++EMLF++ G++ S+ +     G   +   +
Sbjct:   519 DERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLK 578

Query:   474 DGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
             +G++CG+E++ WA +  S   +LP STRT+ A T VE F L  DELK   +  RR +
Sbjct:   579 EGDFCGDELLTWALDPKSG-SNLPSSTRTVKALTEVEAFALIADELKFVASQFRRLH 634

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0009294 "DNA mediated transformation" evidence=RCA

TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 175/535 (32%), Positives = 276/535 (51%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK ++   ++A+ +DP F Y+P +KD  KCI  +  L I AT +R+++D   L H++   
Sbjct:   115 NKLFVTSCILAVSVDPLFLYLPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRF 174

Query:    87 READKKENQR------------KKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFID-GL 133
             R A    + R            +  K   QQ   F      VL  P + +W   +I  G 
Sbjct:   175 RTAFVAPSSRVFGRGELVIDPAQIAKRYLQQY--FIIDFLSVLPLPQIVVWRFLYISKGA 232

Query:   134 AILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFA 193
             ++L   + L              +  ++QY+ R IR Y L ++    +GV A+  W   A
Sbjct:   233 SVLATKRAL-------------RSIILVQYIPRFIRLYPLSSELKRTAGVFAETAWAGAA 279

Query:   194 FYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH-SYVFC-NKCFGDYKL--- 248
             +Y+LLY+ + H+ GA+WY  A+E+   CW +   N +   H +++FC N+    Y     
Sbjct:   280 YYLLLYMLASHIVGAIWYLLALERYNGCWTKVCSNSSLDCHRNFLFCGNEKMDGYAAWTT 339

Query:   249 LNDS-----CPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQD 303
             + DS     CP++T +   ++FGIY  AL SGIV    F  K   CL WGLQ LS  GQ 
Sbjct:   340 IKDSVLQLNCPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQG 399

Query:   304 LETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKD 359
             LETS   GE IF+I + I G++LF  LIG MQ    S T R  ++  K R  + W H + 
Sbjct:   400 LETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRM 459

Query:   360 ISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWED 419
             +   +R ++R   +   L    +  ++LV +LP D  + +K H    L+ ++  FEN ++
Sbjct:   460 LPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDE 519

Query:   420 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYS---KSKLIGLKRQEDG 475
               LD +C  LKP  ++E + ++ EG+ ++EMLF++ G++ S+ +   +S        ++G
Sbjct:   520 RLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEG 579

Query:   476 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
             ++CGEE++ WA +  S   +LP STRT  A T VE F L  DELK   +  RR +
Sbjct:   580 DFCGEELLTWALDPKSG-SNLPSSTRTAKALTEVEAFALIADELKFVASQFRRLH 633

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI

GO:0005886 "plasma membrane" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009294 "DNA mediated transformation" evidence=RCA

TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 166/523 (31%), Positives = 267/523 (51%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK ++   ++++ +DPFFFY+P +  E KC+  +  L ITA+ +R+ +D   L H++ +L
Sbjct:   100 NKLFVASCILSVFVDPFFFYLPVINAESKCLGIDRKLAITASTLRTFIDVFYLAHMALQL 159

Query:    87 READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFP 146
             R A    + R  F      +   +   R +    ++    +  +  + +    Q      
Sbjct:   160 RTAYIAPSSRV-FGRGELVIDPAQIAKRYLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSD 218

Query:   147 IRDTGFSTAMTFFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHM 205
             +  T    A+ F VL QY+ R +R   L ++    +GV A+  W   A+Y+LLY+ + H+
Sbjct:   219 VLAT--KQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHI 276

Query:   206 FGALWYYYAIEKATDCWREASENHTGRSHSYVFC-NKCFGDY--------KLLNDSCPIS 256
              GA WY  A+E+   CW+EA  +    S  +++C N+    Y         +L   C   
Sbjct:   277 VGAFWYLLALERNDACWQEACIDAGNCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRAD 336

Query:   257 TG-NTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIF 315
                N   ++FGIY  AL SGIV    F  K   CL WGLQ LS  GQ LETS    E IF
Sbjct:   337 LDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIF 396

Query:   316 AIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREA 371
             +I + I G++LF  LIG MQ    S T R  ++  K R  + W H + +   +R ++R  
Sbjct:   397 SISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRY 456

Query:   372 KRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKP 431
              +   L    +  + LV +LP D  + +K H    L+ ++  F++ +D  LD +C  LKP
Sbjct:   457 DQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKP 516

Query:   432 VFFSERTTIISEGESIHEMLFVLEGQI-SIYS---KSKLIGLKRQEDGNYCGEEIIDWAE 487
               F+E T ++ EG+ + EMLF++ G++ S+ +   +S        ++G +CGEE++ WA 
Sbjct:   517 CLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWAL 576

Query:   488 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
             +  S   +LP STRT+ A T VE F L ++ELK   +  RR +
Sbjct:   577 DPKSGV-NLPSSTRTVKALTEVEAFALTSEELKFVASQFRRLH 618

GO:0005216 "ion channel activity" evidence=IEA

GO:0005267 "potassium channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=TAS

TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 169/571 (29%), Positives = 282/571 (49%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDE-IKCIHCNDTLGITATVIRSILDFLKLLHISSE 85
             N+ +++  ++A+ +DP FFY+P + +    CI  +  L +T T +R+I+D   L  ++ +
Sbjct:   102 NRLFVISCILAVSVDPLFFYLPIVDNSGSSCIGIDTKLAVTTTTLRTIVDVFYLTRMALQ 161

Query:    86 LREADKKENQR---------KKFKHLWQQL-KNFKKGGREVLEDPMVRMW-MLFFIDGLA 134
              R A    + R            K   + L + F      VL  P + +W  L    G  
Sbjct:   162 FRTAYIAPSSRVFGRGELVIDPAKIAERYLTRYFVVDFLAVLPLPQIAVWKFLHGSKGSD 221

Query:   135 ILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAF 194
             +LP    L             +   ++QY+ R +R   L ++  + +G  A+  W   A+
Sbjct:   222 VLPTKTAL-------------LNIVIVQYIPRFVRFIPLTSELKKTAGAFAEGAWAGAAY 268

Query:   195 YVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH--SYVFCNKCF---GDYK-- 247
             Y+L Y+ + H+ GA WY  ++E+   CWR A +           ++C   F   G+ +  
Sbjct:   269 YLLWYMLASHITGAFWYMLSVERNDTCWRFACKVQPDPRLCVQILYCGTKFVSSGETEWI 328

Query:   248 -----LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQ 302
                  LL  +C  +  + +++N+GIY  A+ SGIV  T F  K   CL WGLQ LS  GQ
Sbjct:   329 KTVPELLKSNCS-AKADDSKFNYGIYGQAISSGIVSSTTFFSKFCYCLWWGLQNLSTLGQ 387

Query:   303 DLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFK 358
              L+TS   GE +F+I + I G++LF  LIG MQ    S T R  ++  K R  + W H +
Sbjct:   388 GLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHR 447

Query:   359 DISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWE 418
              +   +R ++R   +   L    +  +++V  LP D  + +K H   NL+ ++  F N +
Sbjct:   448 SLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMD 507

Query:   419 DYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQ---ED 474
             +  LD +C  LKP  F+E T I+ EG+ ++EM+F++ G++ S+ +     G   +   ++
Sbjct:   508 ERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKE 567

Query:   475 GNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIA----LH-RRF 529
             G++CGEE++ WA +  +   +LP STRT+ A T VE F L+ +ELK   +    LH R+ 
Sbjct:   568 GDFCGEELLTWALDPKAG-SNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQV 626

Query:   530 NQSVSFLQLFWRF--KTFKQMQMKRRQSRSH 558
              Q+  F    WR     F Q   +R   R +
Sbjct:   627 QQTFRFYSQQWRTWASCFIQAAWRRYSRRKN 657

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009860 "pollen tube growth" evidence=IGI

GO:0090406 "pollen tube" evidence=IDA

TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 163/551 (29%), Positives = 275/551 (49%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             N+ +++  ++A+ +DP FFY+P + +   CI  +  L +T T +R+I+D   L  ++ + 
Sbjct:   109 NRMFVISCILAVSVDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQF 168

Query:    87 READKKENQR---------KKFKHLWQQL-KNFKKGGREVLEDPMVRMW-MLFFIDGLAI 135
             R A    + R            K   + L + F      VL  P + +W  L    G  +
Sbjct:   169 RTAYIAPSSRVFGRGELVIDPAKIAERYLTRYFIVDFLAVLPLPQIAVWKFLHGSKGTDV 228

Query:   136 LPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 195
             LP  Q L             +   + QY+ R +R   L ++  + +G  A+  W   A+Y
Sbjct:   229 LPTKQAL-------------LHIVITQYIPRFVRFIPLTSELKKTAGAFAEGAWAGAAYY 275

Query:   196 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSH--SYVFC-NKCFG----DY-- 246
             +L Y+ + H+ GA WY  ++E+   C R A +           ++C +K       D+  
Sbjct:   276 LLWYMLASHITGAFWYMLSVERNDTCLRSACKVQPDPKVCVQILYCGSKLMSSRETDWIK 335

Query:   247 ---KLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQD 303
                 L  ++C   + + +++N+GIY  A+ SGIV  T F  K   CL WGLQ LS  GQ 
Sbjct:   336 SVPDLFKNNCSAKS-DESKFNYGIYSQAVSSGIVSSTTFFSKFCYCLWWGLQNLSTLGQG 394

Query:   304 LETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKD 359
             L+TS   GE +F+I + + G++LF  LIG MQ    S T R  ++  K R  + W H + 
Sbjct:   395 LQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRS 454

Query:   360 ISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWED 419
             +   +R ++R   +   L    +  +++V  LP D  + +K H   NL+ ++  F N ++
Sbjct:   455 LPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDE 514

Query:   420 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQ---EDG 475
               LD +C  LKP  ++E T I+ EG+ ++EMLF++ G++ S+ +     G   +   ++G
Sbjct:   515 RLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEG 574

Query:   476 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIA----LH-RRFN 530
             ++CGEE++ WA +  +   +LP STRT+ A T VE F L+ +ELK   +    LH R+  
Sbjct:   575 DFCGEELLTWALDPKAG-SNLPSSTRTVKALTEVEAFALEAEELKFVASQFRRLHSRQVQ 633

Query:   531 QSVSFLQLFWR 541
             Q+  F    WR
Sbjct:   634 QTFRFYSQQWR 644

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 164/527 (31%), Positives = 274/527 (51%)

Query:    25 IEN--KRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHI 82
             +EN  K  LL  V+A+ +DP F +IP +  +  C   + TL     VIR+ +D   ++HI
Sbjct:    37 LENWRKTVLLACVVALAIDPLFLFIPLIDSQRFCFTFDKTLVAVVCVIRTFIDTFYVIHI 96

Query:    83 SSEL-READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQV 141
                L  E     +Q      L  ++    K     L+    R+   F +D +++LPIPQV
Sbjct:    97 IYYLITETIAPRSQAS----LRGEIVVHSKA---TLK---TRLLFHFIVDIISVLPIPQV 146

Query:   142 LVI--FPIRDTGFSTAMTFFVL--QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVL 197
             +V+   P+  +  S  +  +++  QY+ R+IR Y L+ +     G +A++ W   A  + 
Sbjct:   147 VVLTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKWAGAALNLF 206

Query:   198 LYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSY--VFCNKCFGD-YKLLNDSCP 254
             LY+   ++FGA WY  +IE+ + CWR A    +  + +   + C +   D  + LN SCP
Sbjct:   207 LYMLHSYVFGAFWYLSSIERKSKCWRAACARTSDCNLTVTDLLCKRAGSDNIRFLNTSCP 266

Query:   255 I----STGNTTRYNFGIYKDALQSGI--VRETYFPKKLLRCLHWGLQKLSAFGQDLETSD 308
             +       N+T ++FG+Y DAL+SG+  V+   FP+K + C  WGL+ +SA GQ+LETS+
Sbjct:   267 LIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSN 326

Query:   309 DVGENIFAIWMTIYGVVLFVFLIGR----MQSETTRAHKINQKLRQIKHWKHFKDISTFV 364
               GE  FAI + + G++LF  LIG     +QS TTR  ++ +K R  + W  ++ I  ++
Sbjct:   327 SAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYL 386

Query:   365 RAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWED-YSLD 423
             + +IR  +            ++L+  LP D   + K +   ++L ++      +D + L+
Sbjct:   387 KERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLE 446

Query:   424 HLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQ----EDGNYCG 479
              +C  +K VF+   + I+ EG  + EML V  G++   + S  +G++      +DG+ CG
Sbjct:   447 AVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICG 506

Query:   480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALH 526
             E +     N S     LP STRT++  T VEGF L  D++K  IA H
Sbjct:   507 ELLF----NGS----RLPTSTRTVMTLTEVEGFILLPDDIKF-IASH 544

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005261 "cation channel activity" evidence=IGI;IMP

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 167/540 (30%), Positives = 275/540 (50%)

Query:    25 IEN--KRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHI 82
             +EN  K  LL  V+A+ +DP F +IP +  +  C   + TL     VIR+ +D   ++HI
Sbjct:    37 LENWRKTVLLACVVALAIDPLFLFIPLIDSQRFCFTFDKTLVAVVCVIRTFIDTFYVIHI 96

Query:    83 SSEL-READKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQV 141
                L  E     +Q      L  ++    K     L+  ++  +++  I  L I P   V
Sbjct:    97 IYYLITETIAPRSQAS----LRGEIVVHSKA---TLKTRLLFHFIVDIISVLPI-PQVVV 148

Query:   142 LVIFPIRDTGFSTAMTFFVL--QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLY 199
             L + P+  +  S  +  +++  QY+ R+IR Y L+ +     G +A++     A    LY
Sbjct:   149 LTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKRVGAALNFFLY 208

Query:   200 LQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSY--VFCNKCFGD-YKLLNDSCPI- 255
             +   ++ GA WY  +IE+ + CWR A    +  + +   + C +   D  + LN SCP+ 
Sbjct:   209 MLHSYVCGAFWYLSSIERKSTCWRAACARTSDCNLTVTDLLCKRAGSDNIRFLNTSCPLI 268

Query:   256 ---STGNTTRYNFGIYKDALQSGI--VRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDV 310
                   N+T ++FG+Y DAL+SG+  V+   FP+K + C  WGL+ +SA GQ+LETS+  
Sbjct:   269 DPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSA 328

Query:   311 GENIFAIWMTIYGVVLFVFLIGR----MQSETTRAHKINQKLRQIKHWKHFKDISTFVRA 366
             GE  FAI + + G++LF  LIG     +QS TTR  ++ +K R  + W  +++I  +++ 
Sbjct:   329 GEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKE 388

Query:   367 KIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLC 426
             +IR  +            ++L+  LP D   + K +    LL ++   +  +D  LD LC
Sbjct:   389 RIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALC 448

Query:   427 GCLKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQED---GNYCGEEI 482
               LK V ++E++ I+ EGE + +MLF++ G  IS  +     G     D   G+ CG+ +
Sbjct:   449 ARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-L 507

Query:   483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRF 542
             + WA    SS    PIS+RT+ A T VEGF +  D+LK     +RR +     LQ  +RF
Sbjct:   508 LTWALYSLSSQ--FPISSRTVQALTEVEGFVISADDLKFVATQYRRLHSKQ--LQHMFRF 563

GO:0005216 "ion channel activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005261 "cation channel activity" evidence=IGI

GO:0009620 "response to fungus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120158 hypothetical protein (709 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	559
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	6e-08
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	2e-05

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 414 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIG---LK 470
           F   +D  L+ L   L+   F     II +G+    +  VL G + +Y   +      + 
Sbjct: 2   FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVG 61

Query: 471 RQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530
               G+  GE  +                + T+ A T+ E   L   + +  +  +    
Sbjct: 62  FLGPGDLFGELAL----------LGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELA 111

Query: 531 Q 531
           +
Sbjct: 112 R 112

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 414 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-----KSKLIG 468
           F+N +   L  L   L+PV +     II +G+       ++ G++ +Y      + +++G
Sbjct: 2   FKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIVG 61

Query: 469 LKRQEDGNYCGEEII 483
                 G++ GE  +
Sbjct: 62  TLGP--GDFFGELAL 74

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	559
KOG0498	727	consensus K+-channel ERG and related proteins, con	100.0
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	100.0
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	100.0
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.46
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.44
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.44
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.38
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.36
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.34
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.27
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.26
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.26
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.21
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.21
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.2
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.2
PLN02868	413	acyl-CoA thioesterase family protein	99.16
COG2905	610	Predicted signal-transduction protein containing c	99.15
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.15
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.14
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.05
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	99.02
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	98.94
KOG1113	368	consensus cAMP-dependent protein kinase types I an	98.94
PRK09391	230	fixK transcriptional regulator FixK; Provisional	98.93
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	98.83
PRK10537	393	voltage-gated potassium channel; Provisional	98.45
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.43
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	98.04
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.0
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.64
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	97.4
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	97.38
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	97.11
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	97.03
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	96.89
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	95.98
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	95.9
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	95.36
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	94.06
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	93.63
KOG2302	1956	consensus T-type voltage-gated Ca2+ channel, pore-	92.57
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	92.4
COG4709	195	Predicted membrane protein [Function unknown]	89.52
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	88.79
PF08006	181	DUF1700: Protein of unknown function (DUF1700); In	87.02
PLN03223	1634	Polycystin cation channel protein; Provisional	85.29

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-91  Score=747.84  Aligned_cols=481  Identities=30%  Similarity=0.519  Sum_probs=422.0

Q ss_pred             hhhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhcee
Q 008614           12 IIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADK   91 (559)
Q Consensus        12 ~~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~   91 (559)
                      ..+|++|.|++++.||.+++++|+|+++++|++||++.......|  .+.....+++++|.++|++|++||++||+|||.
T Consensus        66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv  143 (727)
T KOG0498|consen   66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV  143 (727)
T ss_pred             cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence            345999999999999999999999999999999999999877778  778888899999999999999999999999999


Q ss_pred             ccchhhhhhhhhhhhcccccCCceeecChhhHh----hhhhhhhhhhcccccceeeeeeccCCC---Cc-chHHHHHHHH
Q 008614           92 KENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTG---FS-TAMTFFVLQY  163 (559)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~~Dlls~lP~~~i~~~~~~~~~~---~~-~~~~~~~l~r  163 (559)
                      ++++                  -++|.||++||    ++||++|++|++|+|++++|..+....   .. ....++.++|
T Consensus       144 ~~~s------------------~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~r  205 (727)
T KOG0498|consen  144 DPSS------------------YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQR  205 (727)
T ss_pred             CCCC------------------ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHH
Confidence            9843                  37999999999    999999999999999999887651110   11 1256888999


Q ss_pred             HHHHHHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCc
Q 008614          164 LLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCF  243 (559)
Q Consensus       164 l~Rl~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (559)
                      |+||.|+.++++++++..++..+++|+..+++++++++++||.||+||++|.++.++||+++                  
T Consensus       206 L~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------  267 (727)
T KOG0498|consen  206 LPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------  267 (727)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------
Confidence            99999999999999999999999999998899999999999999999999998888887642                  


Q ss_pred             ccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHH
Q 008614          244 GDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYG  323 (559)
Q Consensus       244 ~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G  323 (559)
                         +|+...+....+.+..++||+|            +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|
T Consensus       268 ---tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~G  332 (727)
T KOG0498|consen  268 ---TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFG  332 (727)
T ss_pred             ---ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHh
Confidence               5554422100123334667754            5677999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHH
Q 008614          324 VVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQV  399 (559)
Q Consensus       324 ~~~fa~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i  399 (559)
                      .++||++||||+    +++++.++++.|++++++||++|+||++||+||++|++|+|..++|+||++++++||+.||.+|
T Consensus       333 llL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI  412 (727)
T KOG0498|consen  333 LLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDI  412 (727)
T ss_pred             HHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHH
Confidence            999999999999    5677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCe
Q 008614          400 KLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNY  477 (559)
Q Consensus       400 ~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~  477 (559)
                      .+|+|.++++++|+|+++|++++.+|+.++++..|+|||+|++|||+.++||||.+|.+++.+  .+|..+...+++||+
T Consensus       413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~  492 (727)
T KOG0498|consen  413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDF  492 (727)
T ss_pred             HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999766  335567889999999


Q ss_pred             eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHH-----HHHhHHHHHHHHHHHHH
Q 008614          478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSF-----LQLFWRFKTFKQMQMKR  552 (559)
Q Consensus       478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~-----~~~~~r~~~~~~~~~~~  552 (559)
                      |||+.++||+..+        +++||+|+|.|+++.|+++||..++++||++++++.=     .+..||.-+...+|..-
T Consensus       493 ~GeEl~~~~~~~p--------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~  564 (727)
T KOG0498|consen  493 FGEELLTWCLDLP--------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAW  564 (727)
T ss_pred             cchHHHHHHhcCC--------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHH
Confidence            9988777777554        6899999999999999999999999999999764322     23455555555555544


Q ss_pred             h
Q 008614          553 R  553 (559)
Q Consensus       553 ~  553 (559)
                      +
T Consensus       565 r  565 (727)
T KOG0498|consen  565 R  565 (727)
T ss_pred             H
Confidence            4

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=1.4e-69  Score=618.25  Aligned_cols=432  Identities=16%  Similarity=0.171  Sum_probs=354.7

Q ss_pred             hhhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhcee
Q 008614           12 IIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADK   91 (559)
Q Consensus        12 ~~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~   91 (559)
                      --|||+|.+++++.||.+++++++|++++.|+.+.          |. +......+.++|+++|++|++||+++|+|||+
T Consensus        50 ~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~----------F~-~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~  118 (823)
T PLN03192         50 DGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVA----------FL-NASPKRGLEIADNVVDLFFAVDIVLTFFVAYI  118 (823)
T ss_pred             CCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----------ee-CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEE
Confidence            34799999999999999999999999999997532          21 11122357889999999999999999999999


Q ss_pred             ccchhhhhhhhhhhhcccccCCceeecChhhHh----hhhhhhhhhhcccccceeeeeeccCCCCcchHHHHHHHHHHHH
Q 008614           92 KENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRV  167 (559)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl  167 (559)
                      |+                  ++|.+|.||++|+    |+||++|++|++|++++.... ...........+++++|++|+
T Consensus       119 d~------------------~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~~~~~~~~~~l~llrl~Rl  179 (823)
T PLN03192        119 DP------------------RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGTVKLNLSYSLLGLLRFWRL  179 (823)
T ss_pred             eC------------------CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCCccchHHHHHHHHHHHHHH
Confidence            86                  5678999999999    899999999999998764321 111111111234455555555


Q ss_pred             HHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCccccc
Q 008614          168 IRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK  247 (559)
Q Consensus       168 ~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  247 (559)
                      .|+.++++++++...  ....+.+++++++..++++||+||+||++|..                        .+..+.+
T Consensus       180 ~ri~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~------------------------~~~~~~~  233 (823)
T PLN03192        180 RRVKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADR------------------------YPHQGKT  233 (823)
T ss_pred             HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------cCCCCCc
Confidence            566666665554322  12234455666666677899999999999841                        1123468


Q ss_pred             ccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHH
Q 008614          248 LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLF  327 (559)
Q Consensus       248 Wi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~f  327 (559)
                      |+.....                .     ..+.+++.+|++|+|||++|||||||||++|.|..|++|++++|++|+++|
T Consensus       234 Wi~~~~~----------------~-----~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~  292 (823)
T PLN03192        234 WIGAVIP----------------N-----FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLT  292 (823)
T ss_pred             hHHHhhh----------------c-----cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHH
Confidence            9864200                0     136789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHH
Q 008614          328 VFLIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHF  403 (559)
Q Consensus       328 a~iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l  403 (559)
                      ||++|+++++    .++..+++++++.+++||+++++|++||+||++|+++.|+.+ +.++++++++||++||.++..++
T Consensus       293 a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~l  371 (823)
T PLN03192        293 AYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAE-SLNQQQLIDQLPKSICKSICQHL  371 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHHcCHHHHHHHHHHH
Confidence            9999999955    345567899999999999999999999999999999999754 57889999999999999999999


Q ss_pred             hHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-c-CceEEEEEecCCCeeehh
Q 008614          404 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-K-SKLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       404 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~-~~~~~~~~l~~G~~fGe~  481 (559)
                      +.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|+|++.. . +++..+..+++|++|||.
T Consensus       372 ~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~  451 (823)
T PLN03192        372 FLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEV  451 (823)
T ss_pred             HHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecch
Confidence            99999999999999999999999999999999999999999999999999999999754 2 233457799999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +++  .+.+        +.+|++|.+.|+++.|++++|.++++++|+...
T Consensus       452 ~~l--~~~p--------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~  491 (823)
T PLN03192        452 GAL--CCRP--------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNV  491 (823)
T ss_pred             HHh--cCCC--------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHH
Confidence            774  2332        789999999999999999999999999999853

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-67  Score=524.26  Aligned_cols=390  Identities=18%  Similarity=0.222  Sum_probs=324.9

Q ss_pred             ceehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHh-----hhhhhhhhhhcccc
Q 008614           64 GITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM-----WMLFFIDGLAILPI  138 (559)
Q Consensus        64 ~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~-----~~~F~~Dlls~lP~  138 (559)
                      ...|..+|++.|++|++|++++.||||+                    ++|.+|.|-++.+     +..|.+|++|.+|+
T Consensus        28 ~~~wl~ld~~~D~vyllDi~v~~R~gyl--------------------eqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~   87 (536)
T KOG0500|consen   28 LENWLPLDYLFDFVYLLDIIVRSRTGYL--------------------EQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL   87 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhH--------------------hcCeeehhhHHHHHHHHHhhhhhhhhhhhcch
Confidence            3578999999999999999999999999                    8999999988888     78999999999999


Q ss_pred             cceeeeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008614          139 PQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVI-ADATWGIFAFYVLLYLQSGHMFGALWYYYAIEK  217 (559)
Q Consensus       139 ~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i-~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~  217 (559)
                      |++.++.      ++.  ...   |++||+|+.|+++-+.+.+... .++.+ ++..++...+++.||.||+||+++.. 
T Consensus        88 D~l~~~~------~~~--~~~---r~nRllk~yRl~~F~~rTetrT~~Pn~f-ri~~lv~~~~ilfHWNaClYf~iS~~-  154 (536)
T KOG0500|consen   88 DLLLFKD------GSA--SLE---RLNRLLKIYRLFEFFDRTETRTTYPNAF-RISKLVHYCLILFHWNACLYFLISKA-  154 (536)
T ss_pred             hHHhhcC------Ccc--hHH---HHHHHHHHHHHHHHHHHhccccCCchHH-HHHHHHHHHHHHHHHhhHHHHhhhHh-
Confidence            9987652      221  223   3455555555555444443211 23332 44445555566799999999999952 


Q ss_pred             hhhhHHHhhcccCCCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhh
Q 008614          218 ATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKL  297 (559)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~  297 (559)
                                             .|...++|....-.      ++ .++   .      ....++.++|+.|+||+..||
T Consensus       155 -----------------------~g~~~d~wvY~~i~------d~-~~~---~------c~~~n~~ReY~~S~YWStLTl  195 (536)
T KOG0500|consen  155 -----------------------IGFTTDDWVYPKIN------DP-EFA---T------CDAGNLTREYLYSLYWSTLTL  195 (536)
T ss_pred             -----------------------cCccccccccCCcc------Cc-ccc---c------cchhHHHHHHHHHHHHHhhhh
Confidence                                   23455679865211      11 011   0      113458899999999999999


Q ss_pred             cccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008614          298 SAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKR  373 (559)
Q Consensus       298 tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~  373 (559)
                      ||+|. ..+|.|+.|.+|.|+-.++|+.+||.|+|+++|+    +++..|+|++|+.+++||+.|++|+.||.||.+||+
T Consensus       196 TTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfd  274 (536)
T KOG0500|consen  196 TTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFD  274 (536)
T ss_pred             hhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            99998 4678899999999999999999999999999965    445568999999999999999999999999999999


Q ss_pred             HHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEE
Q 008614          374 ENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFV  453 (559)
Q Consensus       374 ~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI  453 (559)
                      |.|.+++..||+++++.||+.||.||+.+++.+.|+++++|+++.+.++.+++.++++++|+|||+|+++||.+.+||+|
T Consensus       275 Ylwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIV  354 (536)
T KOG0500|consen  275 YLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIV  354 (536)
T ss_pred             HHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          454 LEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       454 ~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      .+|.++|..++|.++...+++|++|||.++.+ +++. ..+|.  |++++++++++++++|+|+|+.+.+++||+-+
T Consensus       355 k~G~L~Vv~dDg~t~~~~L~~G~~FGEisIln-i~g~-~~gNR--RtanvrSvGYSDlfvLskdDl~~aL~eYP~a~  427 (536)
T KOG0500|consen  355 KEGKLAVVADDGVTVFVTLKAGSVFGEISILN-IKGN-KNGNR--RTANVRSVGYSDLFVLSKDDLWEALSEYPDAR  427 (536)
T ss_pred             EccEEEEEecCCcEEEEEecCCceeeeeEEEE-EcCc-ccCCc--ceeeeeeeccceeeEeeHHHHHHHHHhCCHHH
Confidence            99999999988877889999999999997731 3332 23454  99999999999999999999999999999864

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-64  Score=508.63  Aligned_cols=445  Identities=17%  Similarity=0.245  Sum_probs=358.0

Q ss_pred             hccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhceeccc
Q 008614           15 VLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKEN   94 (559)
Q Consensus        15 ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~   94 (559)
                      ||.--+.|+.+||..++++.+|+.+.+|          |+.+|.........|.++|.++|++|++||++||+|.|+.| 
T Consensus       209 IiLHYcaFKt~WDWvIL~LTFYTAimVP----------yNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGP-  277 (971)
T KOG0501|consen  209 IILHYCAFKTIWDWVILILTFYTAIMVP----------YNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGP-  277 (971)
T ss_pred             EEEeeehhhhHHHHHHHHHHHHHHheee----------eeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecC-
Confidence            3444578999999988888877665555          45555554444568999999999999999999999999975 


Q ss_pred             hhhhhhhhhhhhcccccCCceeecChhhHh----hhhhhhhhhhcccccceeeeeeccCCCCcch-HHHHHHHHHHHHHH
Q 008614           95 QRKKFKHLWQQLKNFKKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTA-MTFFVLQYLLRVIR  169 (559)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~-~~~~~l~rl~Rl~R  169 (559)
                                        .|++|.||+.|+    |+||++|++||+|+|.+..+--..  .+-.+ ...++..||+||-|
T Consensus       278 ------------------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--egI~SLFSaLKVVRLLRLGR  337 (971)
T KOG0501|consen  278 ------------------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EGIGSLFSALKVVRLLRLGR  337 (971)
T ss_pred             ------------------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHH
Confidence                              899999999999    999999999999999876542211  11111 12334445555555


Q ss_pred             HHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCccccccc
Q 008614          170 TYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLL  249 (559)
Q Consensus       170 ~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi  249 (559)
                      +.|-+..+.+..       -+.++++++.|.+++||+||+||.+|..+.                 ...-.++...++|+
T Consensus       338 VaRKLD~YlEYG-------AA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL  393 (971)
T KOG0501|consen  338 VARKLDHYLEYG-------AAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWL  393 (971)
T ss_pred             HHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHH
Confidence            555444443321       124567778889999999999999994210                 00001123457888


Q ss_pred             ccccCCCCCCCCccccchhhhhhhcCc-cccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHH
Q 008614          250 NDSCPISTGNTTRYNFGIYKDALQSGI-VRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFV  328 (559)
Q Consensus       250 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa  328 (559)
                      .....   +.+++|+|..-    ..|. +..+|.-..|+.|+||.++.|||||+|+|.|.|+.|++|++++|++|+.+||
T Consensus       394 ~kLa~---~~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYA  466 (971)
T KOG0501|consen  394 WKLAN---DIGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYA  466 (971)
T ss_pred             HHHHh---hcCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHH
Confidence            76543   23455554410    1111 2367778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHh
Q 008614          329 FLIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFG  404 (559)
Q Consensus       329 ~iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~  404 (559)
                      .++|+++.+    .++...+.+.++.+.+||+-+.+|+.|.+||.+|.--.|...+|+|.+++++-.|..+|.+|..|++
T Consensus       467 tIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLN  546 (971)
T KOG0501|consen  467 TIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLN  546 (971)
T ss_pred             HHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecc
Confidence            999999954    4444567778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      ++.++..|-|+-.++.++++|+..++.....|||.|+..||..+.+.||++|.++|.+++.  +++++++||+||+.+. 
T Consensus       547 RKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE--VVAILGKGDVFGD~FW-  623 (971)
T KOG0501|consen  547 RKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE--VVAILGKGDVFGDEFW-  623 (971)
T ss_pred             hhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc--EEEEeecCccchhHHh-
Confidence            9999999999999999999999999999999999999999999999999999999998776  6899999999999866 


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                         ...    ....+.++|+|+++|++..|.|+.+.++++-|..+++
T Consensus       624 ---K~~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFan  663 (971)
T KOG0501|consen  624 ---KEN----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFAN  663 (971)
T ss_pred             ---hhh----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHH
Confidence               211    1223788999999999999999999999999988764

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-58  Score=464.74  Aligned_cols=414  Identities=17%  Similarity=0.207  Sum_probs=349.0

Q ss_pred             hccCCC-hHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHH-HHhhhceec
Q 008614           15 VLYRKA-IAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHIS-SELREADKK   92 (559)
Q Consensus        15 ii~P~s-~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~-l~f~t~y~~   92 (559)
                      -|||.. ++...|-.++.+.-.++.+++|+..-+|+..+.+.         ..|.+.|+++|+++++||+ ++-|..|. 
T Consensus       219 sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~---------~~Wli~Dy~cDiIYllDmlf~q~Rl~fv-  288 (815)
T KOG0499|consen  219 SIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNI---------HYWLIADYICDIIYLLDMLFIQPRLQFV-  288 (815)
T ss_pred             ccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccc---------hhhhhHHHHhhHHHHHHHhhhhhhheee-
Confidence            478997 99999999888888889999999877776654331         3699999999999999997 67788888 


Q ss_pred             cchhhhhhhhhhhhcccccCCceeecChhhHh-----hhhhhhhhhhcccccceeeeeeccCCCCcchHHHHHHHHHHHH
Q 008614           93 ENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM-----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRV  167 (559)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~-----~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl  167 (559)
                                         ..|.+|.|.+...     +..|-+|++|++|+|+++..+...        .++   |++|+
T Consensus       289 -------------------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~--------p~w---R~~R~  338 (815)
T KOG0499|consen  289 -------------------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN--------PMW---RANRM  338 (815)
T ss_pred             -------------------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc--------hhh---hhhhH
Confidence                               6899999988887     778999999999999987654321        122   66666


Q ss_pred             HHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCccccc
Q 008614          168 IRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK  247 (559)
Q Consensus       168 ~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  247 (559)
                      +++-.++.....+...+......+.+.-+-..++++|+.||+||+.+-                    |    +|.+.+.
T Consensus       339 lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sa--------------------y----qglG~~r  394 (815)
T KOG0499|consen  339 LKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASA--------------------Y----QGLGTTR  394 (815)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHh--------------------h----cccccce
Confidence            666665554444444333333334444444445569999999999873                    1    2345678


Q ss_pred             ccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHH
Q 008614          248 LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLF  327 (559)
Q Consensus       248 Wi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~f  327 (559)
                      |+.+.                             -...|++|+|||+.|++|+|- ...|+|..|++|..+.-+.|+++|
T Consensus       395 WVydg-----------------------------~Gn~YiRCyyfa~kt~~tiG~-~P~P~~~~E~Vf~~~~w~mGVFvF  444 (815)
T KOG0499|consen  395 WVYDG-----------------------------EGNEYIRCYYFAVKTLITIGG-LPEPQTLFEIVFQLLNWFMGVFVF  444 (815)
T ss_pred             eEEcC-----------------------------CCCceeeehhhHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHH
Confidence            98541                             234699999999999999996 677899999999999999999999


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHH
Q 008614          328 VFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHF  403 (559)
Q Consensus       328 a~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l  403 (559)
                      |.+||.|-    +.+++.+++++.|++.-.||+..++|++.|+|||.+|+|.|.+++..||.++++.||..||.+++..+
T Consensus       445 slliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V  524 (815)
T KOG0499|consen  445 SLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDV  524 (815)
T ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEe
Confidence            99999998    45667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCeeehhh
Q 008614          404 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       404 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~fGe~~  482 (559)
                      +..++.++.+|++|+.+.+.+++.+++.++|.|||+|+++||.+.+||+|..|+|+|.. .+|.+++.++.+|++|||++
T Consensus       525 ~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEIS  604 (815)
T KOG0499|consen  525 NYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEIS  604 (815)
T ss_pred             ehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999876 66667889999999999997


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF  529 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~  529 (559)
                      ++ +.++    ++.  |+++|+|.++|.|++|+++|+.+++..||+-
T Consensus       605 LL-aigG----~nR--RTAnV~a~Gf~nLfvL~KkdLneil~~YP~s  644 (815)
T KOG0499|consen  605 LL-AIGG----GNR--RTANVVAHGFANLFVLDKKDLNEILVHYPDS  644 (815)
T ss_pred             ee-eecC----CCc--cchhhhhcccceeeEecHhHHHHHHHhCccH
Confidence            73 2222    233  9999999999999999999999999999985

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.46  E-value=6.4e-13  Score=125.75  Aligned_cols=194  Identities=15%  Similarity=0.200  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccceeeeeecc
Q 008614           69 VIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIR  148 (559)
Q Consensus        69 ~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~~~~~  148 (559)
                      ++|.+.|++|.+|+++++++...                    .+.+...      +.|.++|+++++|..........+
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~--------------------~~~~y~~------~~~~~~d~~~~~~~~~~~~~~~~~   54 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGF--------------------KRRRYFR------SWWNWFDFISVIPSIVSVILRSYG   54 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCC--------------------G-GCCCC------SHHHHHHHHHHHHHCCHHCCHCSS
T ss_pred             CChHHHHHHHHHHHHHHHHHhcc--------------------HHHHHhc------Chhhcccccccccccccccccccc
Confidence            46889999999999999997654                    1011111      568999999999985543221111


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcc
Q 008614          149 DTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASEN  228 (559)
Q Consensus       149 ~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~  228 (559)
                      ...........+++|++|++|+.+..+.+.+....+. .....+...+..++++.|+.||+++.+.....+.|+      
T Consensus        55 ~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~------  127 (200)
T PF00520_consen   55 SASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC------  127 (200)
T ss_dssp             --HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS----------
T ss_pred             cccccceEEEEEeeccccccccccccccccccccccc-cccccccccccccccccccccchhheeccccccccc------
Confidence            0000011234445555555555555544443322222 222344555566667799999999888742111100      


Q ss_pred             cCCCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcC
Q 008614          229 HTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSD  308 (559)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~  308 (559)
                                      ...+....        .               ..+.+..+.|..|+||++.++|+.|+||+.+.
T Consensus       128 ----------------~~~~~~~~--------~---------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~  168 (200)
T PF00520_consen  128 ----------------DPTWDSEN--------D---------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPS  168 (200)
T ss_dssp             -------------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHH
T ss_pred             ----------------cccccccc--------c---------------cccccccccccccccccccccccCCccccccc
Confidence                            00000000        0               01334567799999999999999999999997


Q ss_pred             -----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 008614          309 -----DVGENIFA-IWMTIYGVVLFVFLIGRM  334 (559)
Q Consensus       309 -----t~~E~~~~-i~~mi~G~~~fa~iig~i  334 (559)
                           +..|.++. ++..+.+.++++.++|.|
T Consensus       169 ~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  169 CMSARSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             HHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence                 89999999 556666668889998875

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.44  E-value=5e-13  Score=136.98  Aligned_cols=182  Identities=16%  Similarity=0.207  Sum_probs=111.6

Q ss_pred             eehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccceeee
Q 008614           65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVI  144 (559)
Q Consensus        65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~  144 (559)
                      ..+.+++.++-+.|-+..+++|-.+   |+                  +-+.+.+|      -=++|++|++||++=...
T Consensus       240 p~l~~vE~vCi~WFT~E~llR~~~~---P~------------------k~~F~k~p------LNIIDllAIlPFYielll  292 (477)
T KOG3713|consen  240 PILTYVETVCIAWFTFEYLLRFLVA---PN------------------KLEFFKSP------LNIIDLLAILPFYLELLL  292 (477)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHcC---ch------------------HHHHHhCc------chHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999853   21                  11222222      335899999999643211


Q ss_pred             eeccCCCCcc--h-HHHHHHHHHHHHHHHHHhHHHHHH---hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 008614          145 FPIRDTGFST--A-MTFFVLQYLLRVIRTYFLFTDAIE---VSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKA  218 (559)
Q Consensus       145 ~~~~~~~~~~--~-~~~~~l~rl~Rl~R~~~l~~~~~~---~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~  218 (559)
                      ......+..+  . ..+++.+|++|++|++||.|.-.-   ....++.+ ...+..+++...+.+-++|-+-|++-... 
T Consensus       293 ~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S-~~ElglLllfL~~GI~iFStlvY~~Ek~~-  370 (477)
T KOG3713|consen  293 TLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRS-YRELGLLLLFLAVGIVIFSTLVYFAEKDE-  370 (477)
T ss_pred             HHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Confidence            1111100111  1 256777777777777777663222   21112222 11222222222223566666666643210 


Q ss_pred             hhhHHHhhcccCCCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhc
Q 008614          219 TDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLS  298 (559)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~t  298 (559)
                                              +                +++                    ++.-=.|++||++|||
T Consensus       371 ------------------------~----------------~~~--------------------FtSIPa~~WWaiVTMT  390 (477)
T KOG3713|consen  371 ------------------------P----------------DTK--------------------FTSIPAGFWWAVVTMT  390 (477)
T ss_pred             ------------------------C----------------CCC--------------------CccccchhheeeEEEe
Confidence                                    0                000                    1111248999999999


Q ss_pred             ccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          299 AFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ  335 (559)
Q Consensus       299 TvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~  335 (559)
                      ||||||.+|+|..-++++..+.+.|+++-|.=|..|-
T Consensus       391 TVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv  427 (477)
T KOG3713|consen  391 TVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIV  427 (477)
T ss_pred             eecccCccccccchHHHHHHHHHHhHHHhhcchHhHh
Confidence            9999999999999999999999999999998666655

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.44  E-value=4.2e-12  Score=124.44  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=103.9

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~  482 (559)
                      .+.++.+++|+.++++.++.+....+.+.|.+|+.|+++||.++.+|+|.+|.|+++.  +++...+..+.+|++||+.+
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~   85 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA   85 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence            3578899999999999999999999999999999999999999999999999999654  45555678999999999987


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ++   ... +      +.++++|.++|+++.+++++|.+++.++|.+..
T Consensus        86 ~~---~~~-~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~  124 (236)
T PRK09392         86 VV---LDA-P------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMR  124 (236)
T ss_pred             Hh---CCC-C------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHH
Confidence            63   322 1      778999999999999999999999999999864

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.38  E-value=8.6e-12  Score=106.44  Aligned_cols=109  Identities=20%  Similarity=0.312  Sum_probs=94.4

Q ss_pred             CCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhcc
Q 008614          413 KFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQ  489 (559)
Q Consensus       413 ~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~  489 (559)
                      +|+.++++.+..++..++.+.+.+|+.|+.+|+..+.+|+|.+|.+.+..  .+ +...+..+.+|++||+..+.  .+.
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~--~~~   78 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALL--GNG   78 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHh--cCC
Confidence            47889999999999999999999999999999999999999999999654  22 23456789999999998663  122


Q ss_pred             CCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       490 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +        +..+++|.+.|+++.+++++|.++++++|++..
T Consensus        79 ~--------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~  112 (115)
T cd00038          79 P--------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR  112 (115)
T ss_pred             C--------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence            2        678899999999999999999999999999854

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.36  E-value=1e-11  Score=101.90  Aligned_cols=88  Identities=16%  Similarity=0.226  Sum_probs=75.2

Q ss_pred             eEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCce-EEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcc
Q 008614          431 PVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKL-IGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT  507 (559)
Q Consensus       431 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~-~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~  507 (559)
                      ++.|.+|++|+++|+..+++|||.+|.+.+..  .++. ..+..+++|++||+..+.  .+.+        +..+++|.+
T Consensus         1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~~~~--------~~~~~~a~~   70 (91)
T PF00027_consen    1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELL--TGKP--------SPFTVIALT   70 (91)
T ss_dssp             -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHH--HTSB--------BSSEEEESS
T ss_pred             CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeec--CCCc--------cEEEEEEcc
Confidence            36799999999999999999999999999655  3343 346799999999998664  2222        789999999


Q ss_pred             eEEEEEEeHHHHHHHHHhcHh
Q 008614          508 NVEGFTLKTDELKHGIALHRR  528 (559)
Q Consensus       508 ~~~l~~L~~~~f~~ll~~~P~  528 (559)
                      +|+++.|++++|.++++++|+
T Consensus        71 ~~~~~~i~~~~~~~~~~~~p~   91 (91)
T PF00027_consen   71 DSEVLRIPREDFLQLLQQDPE   91 (91)
T ss_dssp             SEEEEEEEHHHHHHHHHHSHH
T ss_pred             CEEEEEEeHHHHHHHHHhCcC
Confidence            999999999999999999996

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.34  E-value=3.5e-11  Score=115.70  Aligned_cols=108  Identities=15%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehhhhhhhhccCC
Q 008614          415 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEEIIDWAENQSS  491 (559)
Q Consensus       415 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~  491 (559)
                      +.++++.++.++..++.+.|.+|+.|+.+|+.++.+|+|.+|.++++.  . ++...+..+++|++||+..++   ... 
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~---~~~-   81 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF---EEG-   81 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhc---cCC-
Confidence            457899999999999999999999999999999999999999999653  3 344556789999999998663   221 


Q ss_pred             CCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          492 SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       492 ~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                           +++..+++|.++|+++.+++++|.++++++|++..
T Consensus        82 -----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  116 (211)
T PRK11753         82 -----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM  116 (211)
T ss_pred             -----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHH
Confidence                 12677899999999999999999999999999853

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.27  E-value=1e-10  Score=100.35  Aligned_cols=110  Identities=18%  Similarity=0.294  Sum_probs=93.8

Q ss_pred             CCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehhhhhhhhcc
Q 008614          413 KFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEEIIDWAENQ  489 (559)
Q Consensus       413 ~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~~l~~~l~~  489 (559)
                      +|.+++++.++.++..++.+.|.+|++|+++|+..+.+|||.+|.+.+..   +++...+..+.+|++||+..+.  ...
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~--~~~   78 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALL--TNS   78 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhc--cCC
Confidence            47889999999999999999999999999999999999999999999654   3334467799999999998662  011


Q ss_pred             CCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       490 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      +      .++..++.|.+.|+++.++.+++.+....+|.+.
T Consensus        79 ~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  113 (120)
T smart00100       79 R------RAASATAVALELATLLRIDFRDFLQLLQENPQLL  113 (120)
T ss_pred             C------cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHH
Confidence            1      1267889999999999999999999999999874

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=5.4e-12  Score=129.04  Aligned_cols=120  Identities=22%  Similarity=0.360  Sum_probs=104.2

Q ss_pred             HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc----CceEEEEEecCCCe
Q 008614          402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK----SKLIGLKRQEDGNY  477 (559)
Q Consensus       402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~----~~~~~~~~l~~G~~  477 (559)
                      .-+.++|+++|+|+++|++.+..++..++...|..|++|+++|+.++..|+|.+|.|.|...    +....+..+++||+
T Consensus       268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~  347 (732)
T KOG0614|consen  268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY  347 (732)
T ss_pred             HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence            45678899999999999999999999999999999999999999999999999999998762    22334679999999


Q ss_pred             eehhhhhhhhccCCCCCCCCCcccEEEEcce-EEEEEEeHHHHHHHHHhcHhhhh
Q 008614          478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      |||-++.   ...       .|++++.|... ++++.|+|+.|.+++-...++.+
T Consensus       348 FGE~al~---~ed-------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~e  392 (732)
T KOG0614|consen  348 FGERALL---GED-------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE  392 (732)
T ss_pred             hhHHHhh---ccC-------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence            9999884   322       28999999988 99999999999999887777753

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=4.7e-12  Score=129.51  Aligned_cols=119  Identities=20%  Similarity=0.274  Sum_probs=105.5

Q ss_pred             HHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614          399 VKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC  478 (559)
Q Consensus       399 i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f  478 (559)
                      =..++-++.+++..|++|++.+.+++++.+|.+..|.+|+.|++|||+++++|.+.+|+++|...+.  .+..+++|..|
T Consensus       147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~--ll~~m~~gtvF  224 (732)
T KOG0614|consen  147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK--LLGKMGAGTVF  224 (732)
T ss_pred             cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe--eeeccCCchhh
Confidence            3456667888899999999999999999999999999999999999999999999999999987544  57899999999


Q ss_pred             ehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614          479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF  529 (559)
Q Consensus       479 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~  529 (559)
                      ||.++++  +.+        |++||+|+++|.+|.|+|+-|+.++..-..-
T Consensus       225 GELAILy--nct--------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~  265 (732)
T KOG0614|consen  225 GELAILY--NCT--------RTASVRALTDVRLWAIDREVFQAIMMRTGLE  265 (732)
T ss_pred             hHHHHHh--CCc--------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9998864  333        9999999999999999999999998765443

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.21  E-value=2.3e-11  Score=119.55  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=97.3

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      .+.+++.-+|++++++.+.++...|.++.+..|+.|+++||.++.+|+|.+|+++|+..+.  .+..+++|..|||.++.
T Consensus       121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~--~v~~~~~g~sFGElALm  198 (368)
T KOG1113|consen  121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT--YVTTYSPGGSFGELALM  198 (368)
T ss_pred             HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe--EEeeeCCCCchhhhHhh
Confidence            4567788899999999999999999999999999999999999999999999999987644  57899999999999985


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIAL  525 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~  525 (559)
                      +  +.        +|.+|++|.+++.+|.|++..|..++-.
T Consensus       199 y--n~--------PRaATv~a~t~~klWgldr~SFrrIi~~  229 (368)
T KOG1113|consen  199 Y--NP--------PRAATVVAKSLKKLWGLDRTSFRRIIMK  229 (368)
T ss_pred             h--CC--------CcccceeeccccceEEEeeceeEEEeec
Confidence            2  33        3999999999999999999999876643

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.21  E-value=5.7e-12  Score=123.05  Aligned_cols=44  Identities=18%  Similarity=0.340  Sum_probs=39.4

Q ss_pred             HHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHH
Q 008614          289 CLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIG  332 (559)
Q Consensus       289 slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig  332 (559)
                      |++||++|||||||||..|.|..-+++..++.+.|+...|.-+-
T Consensus       397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVP  440 (507)
T KOG1545|consen  397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVP  440 (507)
T ss_pred             cceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccccc
Confidence            89999999999999999999999999999999999877665433

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.20  E-value=4.6e-10  Score=109.87  Aligned_cols=113  Identities=13%  Similarity=0.123  Sum_probs=93.0

Q ss_pred             hcCCcCCCCCCHHHHHHHHhcCee-EEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhh
Q 008614          408 LGQMQKFENWEDYSLDHLCGCLKP-VFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEII  483 (559)
Q Consensus       408 l~~v~~F~~~~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l  483 (559)
                      +++.+.|..++++.++.|....+. +.|.+||.|+++||.++++|+|.+|.|+++.  .+| ...+..+.+|++||+..+
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            445555557999999999988864 6799999999999999999999999999665  334 445667899999998655


Q ss_pred             hhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       484 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .   ...        ...+++|.++|+++.+++++|.+++.++|++..
T Consensus        95 ~---~~~--------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~  131 (235)
T PRK11161         95 G---SGQ--------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQ  131 (235)
T ss_pred             c---CCC--------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHH
Confidence            2   222        345799999999999999999999999999854

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.20  E-value=5.4e-10  Score=106.98  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=94.5

Q ss_pred             cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhh
Q 008614          409 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDW  485 (559)
Q Consensus       409 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~  485 (559)
                      .+.+.|...+++....+....+.+.+++|+.|+++||.++.+|+|.+|.+.++.  .+| ...+..+++|++||+.++. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~-   81 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL-   81 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh-
Confidence            455677777888888888899999999999999999999999999999999655  333 4456789999999999774 


Q ss_pred             hhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          486 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       486 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                        ...       ++.++++|.++|+++.+++++|.+++.+.|.+.
T Consensus        82 --~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~  117 (214)
T COG0664          82 --GGD-------PRSASAVALTDVEVLEIPRKDFLELLAESPKLA  117 (214)
T ss_pred             --cCC-------CccceEEEcceEEEEEecHHHHHHHHhhCcHHH
Confidence              221       288999999999999999999999987788874

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.16  E-value=2.6e-10  Score=120.89  Aligned_cols=112  Identities=13%  Similarity=0.203  Sum_probs=97.1

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~  482 (559)
                      .+.++++++|++++++.++.++..++.+.|.+||+|+++||.++.+|+|.+|.|++..  .+|+..+..+++|++||+. 
T Consensus         7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-   85 (413)
T PLN02868          7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-   85 (413)
T ss_pred             HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence            3567899999999999999999999999999999999999999999999999999755  3445567789999999975 


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRR  528 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~  528 (559)
                      +   .+.+        +.++++|.++|+++.|++++|..+...++.
T Consensus        86 l---~~~~--------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~  120 (413)
T PLN02868         86 L---SGSV--------HSADVVAVSELTCLVLPHEHCHLLSPKSIW  120 (413)
T ss_pred             h---CCCC--------cccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence            4   2322        788999999999999999999988766544

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.15  E-value=4.4e-10  Score=116.91  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=103.2

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      .+++.++|.|..++++.+.+|...++...|.+||.|+..|.+.+.+|+|.+|.|++..++|. .+..+..|+.||-.++.
T Consensus         6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-v~~~~~~gdlFg~~~l~   84 (610)
T COG2905           6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-VLDRLAAGDLFGFSSLF   84 (610)
T ss_pred             HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-eeeeeccCccccchhhc
Confidence            46788999999999999999999999999999999999999999999999999999988886 68899999999998774


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                         ...     .  ....+.|.+++-+|.|+++.|.+++.++|+++
T Consensus        85 ---~~~-----~--~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~  120 (610)
T COG2905          85 ---TEL-----N--KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFA  120 (610)
T ss_pred             ---ccC-----C--CcceeEeeccceEEecCHHHHHHHHHhCcHHH
Confidence               221     1  34568888899999999999999999999994

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.15  E-value=4.1e-10  Score=109.63  Aligned_cols=99  Identities=13%  Similarity=0.172  Sum_probs=84.2

Q ss_pred             HHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCc
Q 008614          423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS  499 (559)
Q Consensus       423 ~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r  499 (559)
                      .++....+.+.|.+|+.|+++||.++.+|+|.+|.|+++.  .+| ...+..+.+|++||+.+++   .+.       ++
T Consensus        25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~---~~~-------~~   94 (226)
T PRK10402         25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELI---DKD-------HE   94 (226)
T ss_pred             HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhh---cCC-------CC
Confidence            3577788999999999999999999999999999999654  334 4456789999999998663   322       17


Q ss_pred             ccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          500 TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       500 ~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ..+++|.++|+++.+++++|.+++.++|.+..
T Consensus        95 ~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~  126 (226)
T PRK10402         95 TKAVQAIEECWCLALPMKDCRPLLLNDALFLR  126 (226)
T ss_pred             CccEEEeccEEEEEEEHHHHHHHHhcCHHHHH
Confidence            78899999999999999999999999999864

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.14  E-value=3.6e-10  Score=90.73  Aligned_cols=55  Identities=18%  Similarity=0.362  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      .|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++...
T Consensus        24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen   24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3677999999999999999999999999999999999999999999999886543

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.05  E-value=6.2e-09  Score=107.54  Aligned_cols=88  Identities=15%  Similarity=0.226  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC
Q 008614          282 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT-RAHKINQKLRQIKHWKHFKDI  360 (559)
Q Consensus       282 ~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~-~~~~~~~~~~~i~~~m~~~~l  360 (559)
                      -+.-|..|++|++.|+|||||||.+|+|..-++.+.++-++|..+||.--|.++|-.+ +.+|.+    .=++|-++++.
T Consensus       266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~----RQKHf~rrr~p  341 (654)
T KOG1419|consen  266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH----RQKHFNRRRNP  341 (654)
T ss_pred             cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH----HHHHHHhhcch
Confidence            4567999999999999999999999999999999999999999999998888885332 222211    12567777887


Q ss_pred             CHHHHHHHHHHHH
Q 008614          361 STFVRAKIREAKR  373 (559)
Q Consensus       361 p~~L~~rv~~y~~  373 (559)
                      -..|.+-.-+||.
T Consensus       342 AA~LIQc~WR~ya  354 (654)
T KOG1419|consen  342 AASLIQCAWRYYA  354 (654)
T ss_pred             HHHHHHHHHHHHh
Confidence            7888777766664

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.02  E-value=3.8e-10  Score=116.08  Aligned_cols=114  Identities=11%  Similarity=0.176  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------------
Q 008614          284 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKI----NQ-------------  346 (559)
Q Consensus       284 ~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~----~~-------------  346 (559)
                      ..|..|+|+-++||+||||||+..+|...+.|.++..+.|..+||--+-.|..+.-+.+++    +.             
T Consensus       287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkhivvcghi  366 (1103)
T KOG1420|consen  287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKHIVVCGHI  366 (1103)
T ss_pred             chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCeeEEEecce
Confidence            4589999999999999999999999999999999999999999998888887655433322    11             


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCC-HHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCC
Q 008614          347 KLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIH-IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFEN  416 (559)
Q Consensus       347 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~-~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~  416 (559)
                      ..+.+.+|++                ++..+....+| |--++...||.|.-|   .+++....++.+|++
T Consensus       367 tyesvshflk----------------dflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg  418 (1103)
T KOG1420|consen  367 TYESVSHFLK----------------DFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG  418 (1103)
T ss_pred             eHHHHHHHHH----------------HHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence            0233444433                23333333445 335678889988755   566677788888875

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=98.94  E-value=1.2e-08  Score=96.60  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             CCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEE
Q 008614          437 RTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFT  513 (559)
Q Consensus       437 ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~  513 (559)
                      |+.|+++||..+.+|+|.+|.|+++.  .+ ++..+..+++|++||+..++   ...     ..++..+++|.++|+++.
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~---~~~-----~~~~~~~~~A~~~~~v~~   72 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLI---TGH-----RSDRFYHAVAFTRVELLA   72 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeec---cCC-----CCccceEEEEecceEEEE
Confidence            78999999999999999999999654  43 44457899999999998663   221     111457799999999999


Q ss_pred             EeHHHHHHHHHhcHhhhh
Q 008614          514 LKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       514 L~~~~f~~ll~~~P~~~~  531 (559)
                      +++++|.+++.++|++..
T Consensus        73 i~~~~~~~l~~~~p~l~~   90 (193)
T TIGR03697        73 VPIEQVEKAIEEDPDLSM   90 (193)
T ss_pred             eeHHHHHHHHHHChHHHH
Confidence            999999999999999854

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=98.94  E-value=2.1e-09  Score=105.84  Aligned_cols=117  Identities=14%  Similarity=0.288  Sum_probs=103.3

Q ss_pred             HHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCeee
Q 008614          401 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCG  479 (559)
Q Consensus       401 ~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~fG  479 (559)
                      ..+|.+.|+++|+++.+.......++..+.+..|.+|+.|+.+|+.++.+|+|.+|+|.+.. .+| ..+ .++.|++||
T Consensus       235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~-v~v-kl~~~dyfg  312 (368)
T KOG1113|consen  235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG-VEV-KLKKGDYFG  312 (368)
T ss_pred             hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC-eEE-Eechhhhcc
Confidence            46788999999999999999999999999999999999999999999999999999999765 334 344 999999999


Q ss_pred             hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614          480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF  529 (559)
Q Consensus       480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~  529 (559)
                      |.++.  .+.+        |.+||.|.+...+..++++.|+.++.-.-++
T Consensus       313 e~al~--~~~p--------r~Atv~a~~~~kc~~~dk~~ferllgpc~di  352 (368)
T KOG1113|consen  313 ELALL--KNLP--------RAATVVAKGRLKCAKLDKPRFERLLGPCQDI  352 (368)
T ss_pred             hHHHH--hhch--------hhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence            99875  3333        8999999999999999999999998766554

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=98.93  E-value=1.3e-08  Score=99.30  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=80.5

Q ss_pred             HHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCc
Q 008614          423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS  499 (559)
Q Consensus       423 ~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r  499 (559)
                      ..+....+.+.|.+|+.|+++||.++.+|+|.+|.|+++.  .+| +..+..+.+|++||+..     ..+        +
T Consensus        32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~-----~~~--------~   98 (230)
T PRK09391         32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES-----GST--------H   98 (230)
T ss_pred             ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC-----CCc--------C
Confidence            3566778889999999999999999999999999999654  334 44566889999999631     111        5


Q ss_pred             ccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          500 TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       500 ~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ..+++|.++|+++.+++++|.+++.++|++..
T Consensus        99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~  130 (230)
T PRK09391         99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVAR  130 (230)
T ss_pred             CeEEEEcCceEEEEEEHHHHHHHHhhChHHHH
Confidence            78899999999999999999999999999864

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=98.83  E-value=7.2e-08  Score=91.97  Aligned_cols=81  Identities=17%  Similarity=0.221  Sum_probs=67.2

Q ss_pred             cCeeEEeCCCCEEEccCC--ccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccE
Q 008614          428 CLKPVFFSERTTIISEGE--SIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRT  502 (559)
Q Consensus       428 ~l~~~~~~~ge~I~~~Gd--~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~t  502 (559)
                      ..+...|.+|+.|+++||  .++.+|+|.+|.|+++.  .+ ++..+..+.+|++||+.++.   ..+        ++.+
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~---~~~--------~~~~   73 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA---GAE--------RAYF   73 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc---CCC--------CCce
Confidence            467788999999999999  77999999999999654  33 44556788999999997552   322        6788


Q ss_pred             EEEcceEEEEEEeHHHH
Q 008614          503 IIAHTNVEGFTLKTDEL  519 (559)
Q Consensus       503 v~A~~~~~l~~L~~~~f  519 (559)
                      +.|.++|+++.+++++|
T Consensus        74 ~~A~~~~~v~~i~~~~~   90 (202)
T PRK13918         74 AEAVTDSRIDVLNPALM   90 (202)
T ss_pred             EEEcCceEEEEEEHHHc
Confidence            99999999999998876

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.45  E-value=3e-06  Score=88.55  Aligned_cols=52  Identities=17%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS  336 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s  336 (559)
                      .+..|+||++.|+||+||||+.|.|...+++++++++.|..+|++.++.+..
T Consensus       168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~  219 (393)
T PRK10537        168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG  219 (393)
T ss_pred             CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999999999999999999999999999999998874

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.43  E-value=1.7e-08  Score=99.86  Aligned_cols=45  Identities=11%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             HHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHH
Q 008614          287 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLI  331 (559)
Q Consensus       287 l~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~ii  331 (559)
                      -.++++.++||||.||||.+|.|...++|.-++-+.|+.+.|.-+
T Consensus       358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV  402 (632)
T KOG4390|consen  358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV  402 (632)
T ss_pred             cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence            358899999999999999999999999999999999998888643

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=98.04  E-value=6.7e-06  Score=89.80  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=84.8

Q ss_pred             HHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEE-EEE-cCceE-EEEEecCCCeeehhhhhhhhccCCCCCCC
Q 008614          420 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQIS-IYS-KSKLI-GLKRQEDGNYCGEEIIDWAENQSSSHGHL  496 (559)
Q Consensus       420 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~-v~~-~~~~~-~~~~l~~G~~fGe~~l~~~l~~~~~~~~~  496 (559)
                      .+++.+=..+.-....||+.++++||.++++|+|..|.++ +.. .++++ .+..++.||.+|+....  .+.+      
T Consensus       499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~l--t~~~------  570 (1158)
T KOG2968|consen  499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEML--TKQP------  570 (1158)
T ss_pred             HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHh--hcCC------
Confidence            3666666778888999999999999999999999999999 444 33332 46789999999998442  2433      


Q ss_pred             CCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          497 PISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       497 ~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                        |..|+.|+.++|+.+|+..-|..+..+||.+-.
T Consensus       571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~  603 (1158)
T KOG2968|consen  571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVT  603 (1158)
T ss_pred             --ccceEEEEeehhhhhccHHHHHHHHHhccHHHH
Confidence              889999999999999999999999999999854

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.00  E-value=0.00058  Score=70.18  Aligned_cols=54  Identities=11%  Similarity=0.038  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          282 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ  335 (559)
Q Consensus       282 ~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~  335 (559)
                      ....|+.|++....|..++||||++|.|.--+..+++.-++|++.-|.+++-++
T Consensus       284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvis  337 (489)
T KOG3684|consen  284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIA  337 (489)
T ss_pred             hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHH
Confidence            445689999999999999999999999999999999999999999999998887

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.64  E-value=0.00027  Score=72.26  Aligned_cols=53  Identities=11%  Similarity=0.214  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhHhhcccccCC--CCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          284 KKLLRCLHWGLQKLSAFGQDL--ETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS  336 (559)
Q Consensus       284 ~~Yl~slYwa~~T~tTvGyGd--i~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s  336 (559)
                      ..+..+++||+.|+||+|||.  ++|....-.+..++=+++|.++.|+++|-+=+
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa  137 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA  137 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357789999999999999998  67777777777888899999999999988754

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00019  Score=76.39  Aligned_cols=54  Identities=11%  Similarity=0.287  Sum_probs=50.0

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      +..|+|++.+++||+|||+++|.|...++++|+..++|.-++..++++++....
T Consensus       116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~  169 (433)
T KOG1418|consen  116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLA  169 (433)
T ss_pred             cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            556999999999999999999999999999999999999999999999995544

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=97.38  E-value=0.00013  Score=57.35  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=29.3

Q ss_pred             hhhccCCChHHHHHHHHHHHHHHHHHhhccee
Q 008614           13 IIVLYRKAIAAAIENKRYLLLNVIAMILDPFF   44 (559)
Q Consensus        13 ~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~   44 (559)
                      .+||||.|+++.+||.+++++++++++++|+.
T Consensus        36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~   67 (77)
T PF08412_consen   36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFR   67 (77)
T ss_pred             CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            47999999999999999999999999998864

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=97.11  E-value=0.0043  Score=68.66  Aligned_cols=113  Identities=14%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             HHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehh-hhhhhhccCCCCCCCCCcc
Q 008614          425 LCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEE-IIDWAENQSSSHGHLPIST  500 (559)
Q Consensus       425 l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~-~l~~~l~~~~~~~~~~~r~  500 (559)
                      ++.+++...+..||+|++.|+..+.+|.+.+|.+++.-   +++...+..+.+|+-|-.. ++   ++.. +....+.++
T Consensus       111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSi---Ld~l-~~~ps~~~~  186 (1158)
T KOG2968|consen  111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSI---LDSL-PGFPSLSRT  186 (1158)
T ss_pred             echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHH---HHhc-cCCCcccce
Confidence            44788888999999999999999999999999999654   3333456799999877664 33   2322 222223467


Q ss_pred             cEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHHHHHhHHH
Q 008614          501 RTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRF  542 (559)
Q Consensus       501 ~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~~~~~~r~  542 (559)
                      -.++|.++|.+..++.+.|.+...+||+-. .+.+|..+.|+
T Consensus       187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~-iriiQvvmTRL  227 (1158)
T KOG2968|consen  187 IAAKAATDCTVARIPYTSFRESFHKNPESS-IRIIQVVMTRL  227 (1158)
T ss_pred             eeeeeecCceEEEeccchhhhhhccChHHH-HHHHHHHHHHH
Confidence            779999999999999999999999999953 23333334443

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=97.03  E-value=0.038  Score=48.96  Aligned_cols=129  Identities=14%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHhc-CeeEEeCCCCEEEccCC-ccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCC
Q 008614          416 NWEDYSLDHLCGC-LKPVFFSERTTIISEGE-SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSH  493 (559)
Q Consensus       416 ~~~~~~l~~l~~~-l~~~~~~~ge~I~~~Gd-~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~  493 (559)
                      +.|...-++++.+ .+.....+|+.-.-||. +.+.+-++++|.+.|..++.  .+..+.+-++..--... ....+ . 
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~--fLH~I~p~qFlDSPEW~-s~~~s-~-   88 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGR--FLHYIYPYQFLDSPEWE-SLRPS-E-   88 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCE--eeEeecccccccChhhh-ccccC-C-
Confidence            4677777778777 56677899999999985 56899999999999987654  46777887776644331 01111 1 


Q ss_pred             CCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 008614          494 GHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRR  553 (559)
Q Consensus       494 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~~~~~~r~~~~~~~~~~~~  553 (559)
                      +  ..-..|+.|.+.|..+..+|+.+..++.+.|.++  .+|...-.+..+.|-.+++++
T Consensus        89 ~--~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~--~vF~~liGkDI~~KLy~ln~~  144 (153)
T PF04831_consen   89 D--DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA--AVFSNLIGKDIAEKLYSLNEK  144 (153)
T ss_pred             C--CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH--HHHHHHHHHHHHHHHHHhhhH
Confidence            1  1246789999999999999999999999999984  466666677777777666654

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=96.89  E-value=0.035  Score=52.44  Aligned_cols=101  Identities=14%  Similarity=0.113  Sum_probs=76.0

Q ss_pred             HHHHHHHhcCeeEEeCCCCEE-EccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCC
Q 008614          420 YSLDHLCGCLKPVFFSERTTI-ISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPI  498 (559)
Q Consensus       420 ~~l~~l~~~l~~~~~~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~  498 (559)
                      ...+.+...-++..+.+|..+ ..+....+.++++.+|.|.+...++ ..+.+..+...||-....   .+.       .
T Consensus        13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~-ll~~t~~aP~IlGl~~~~---~~~-------~   81 (207)
T PRK11832         13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN-VLIGITQAPYIMGLADGL---MKN-------D   81 (207)
T ss_pred             HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC-eEEEeccCCeEeeccccc---CCC-------C
Confidence            355667777788889999997 4444444679999999999965555 457788888899965331   221       0


Q ss_pred             cccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          499 STRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       499 r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .....+|.++|+++.+++++|.++++++.=+++
T Consensus        82 ~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~  114 (207)
T PRK11832         82 IPYKLISEGNCTGYHLPAKQTITLIEQNQLWRD  114 (207)
T ss_pred             ceEEEEEcCccEEEEeeHHHHHHHHHHhchHHH
Confidence            346799999999999999999999998866543

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=95.98  E-value=0.0086  Score=59.17  Aligned_cols=50  Identities=10%  Similarity=0.152  Sum_probs=39.6

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCC-------hhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDD-------VGEN-IFAIWMTIYGVVLFVFLIGRMQ  335 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t-------~~E~-~~~i~~mi~G~~~fa~iig~i~  335 (559)
                      |..|+|+.+.|+||+|+||.+|-.       ..++ .++.+.+++|..+++..++-+.
T Consensus       187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nllv  244 (350)
T KOG4404|consen  187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLV  244 (350)
T ss_pred             hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHH
Confidence            777999999999999999998832       3344 4567778889888887777665

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=95.90  E-value=0.0018  Score=63.85  Aligned_cols=50  Identities=12%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ  335 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~  335 (559)
                      ..-|+|||.+.+||+|||-.+|.|+.-++|+|+.-++|+-+--..+.+++
T Consensus        81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g  130 (350)
T KOG4404|consen   81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG  130 (350)
T ss_pred             cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence            44599999999999999999999999999999999999866555555554

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=95.36  E-value=0.11  Score=52.89  Aligned_cols=55  Identities=13%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             HHHHHHHHhHhhcccccCCCCc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETS--DDVGENIFAIWMTIYGVVLFVFLIGRMQSETTR  340 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p--~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~  340 (559)
                      ...|+-|++-|=||+|||-=.+  .-..-.+..++=+++|+++-|+++|.+-+-.++
T Consensus       113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar  169 (400)
T KOG3827|consen  113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR  169 (400)
T ss_pred             hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5568889999999999997443  334445555677889999999999998755443

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=94.06  E-value=0.12  Score=55.57  Aligned_cols=111  Identities=13%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEe-CCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFF-SERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEII  483 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~-~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l  483 (559)
                      .+++.+.|-|.+++-...++|+..|-..+. ..|.+|...|+.-+..+.|++|.|+|...+|+  ...+.-|+-||-.--
T Consensus       280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk--~e~l~mGnSFG~~PT  357 (1283)
T KOG3542|consen  280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGK--REELKMGNSFGAEPT  357 (1283)
T ss_pred             HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCc--eEEeecccccCCCCC
Confidence            467788999999999999999998876554 68999999999999999999999998887774  468888999995421


Q ss_pred             hhhhccCCCCCCCCCcccEE-EEcceEEEEEEeHHHHHHHHHhcH
Q 008614          484 DWAENQSSSHGHLPISTRTI-IAHTNVEGFTLKTDELKHGIALHR  527 (559)
Q Consensus       484 ~~~l~~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~P  527 (559)
                         .+.+ .      -.--+ .-+.+|+..++...|+-.++..-.
T Consensus       358 ---~dkq-y------m~G~mRTkVDDCqFVciaqqDycrIln~ve  392 (1283)
T KOG3542|consen  358 ---PDKQ-Y------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE  392 (1283)
T ss_pred             ---cchh-h------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence               0100 0      00012 245789999999999998886543

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=93.63  E-value=0.013  Score=62.30  Aligned_cols=47  Identities=11%  Similarity=0.209  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhH--------HHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGEN--------IFAIWMTIYGVVLFVFLI  331 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~--------~~~i~~mi~G~~~fa~ii  331 (559)
                      -|+.|+|++++|+||+|+||++|.+...+        ....+..++|....+.+.
T Consensus       242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            47789999999999999999999988766        567777777777766555

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.57  E-value=4.9  Score=45.93  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=45.7

Q ss_pred             ehhhhHHHHHHHHHHHHHHHhhh-ceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhccc--cccee
Q 008614           66 TATVIRSILDFLKLLHISSELRE-ADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILP--IPQVL  142 (559)
Q Consensus        66 ~~~~~~~~~d~~f~~Di~l~f~t-~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP--~~~i~  142 (559)
                      .+.+-|++.-++|+..+.++--. |.+                     -|+    .....+.|=.+|.+-++-  +|+++
T Consensus      1157 FltlsnyIFtaIfV~Em~lKVVALGl~---------------------fge----~aYl~ssWN~LDgflv~vsviDilv 1211 (1956)
T KOG2302|consen 1157 FLTLSNYIFTAIFVVEMTLKVVALGLY---------------------FGE----QAYLRSSWNVLDGFLVAVSVIDILV 1211 (1956)
T ss_pred             EEEecchHHHHHHHHHHHHHHHhhhhc---------------------cch----HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34456789999999999988553 322                     121    112225576666543221  12222


Q ss_pred             eeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 008614          143 VIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSG  182 (559)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~  182 (559)
                      ..    ...+  ..+++..+|.+|++|-+|-+|.+.+..+
T Consensus      1212 s~----asa~--g~kILgVlrvLRlLRtlRpLRviSra~g 1245 (1956)
T KOG2302|consen 1212 SQ----ASAG--GAKILGVLRVLRLLRTLRPLRVISRAPG 1245 (1956)
T ss_pred             HH----hhhh--hHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence            11    0011  1356666677777777777776665543

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=92.40  E-value=0.7  Score=48.87  Aligned_cols=49  Identities=8%  Similarity=0.070  Sum_probs=33.5

Q ss_pred             HHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          287 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ  335 (559)
Q Consensus       287 l~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~  335 (559)
                      ..|+|+.++|.+||||||-.|.-..-.++..+++-++.++.---+..++
T Consensus       219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~  267 (1087)
T KOG3193|consen  219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELG  267 (1087)
T ss_pred             eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHH
Confidence            3589999999999999999997666666555554444444333333333

>COG4709 Predicted membrane protein [Function unknown]

Probab=89.52  E-value=1.9  Score=39.73  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--hcCCCHHHHHhcC--CHHHHHHHHHHHhHHHhcCCcCCCCCCHHHH
Q 008614          347 KLRQIKHWKHFKDISTFVRAKIREAKRENLLL--KHDIHIDSLVSDL--PDDTAKQVKLHFGRNLLGQMQKFENWEDYSL  422 (559)
Q Consensus       347 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~ll~~L--p~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l  422 (559)
                      -++++++|++  ++|++.++.+..||+-.+.+  ..|.+|+++..+|  |.++-.|+..+.-.+-.+.-|-+++.+...+
T Consensus         6 fL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii   83 (195)
T COG4709           6 FLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAII   83 (195)
T ss_pred             HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHH
Confidence            4678888887  89999999999999877754  3577899999987  6778888887776677776777777766544


Q ss_pred             HHH
Q 008614          423 DHL  425 (559)
Q Consensus       423 ~~l  425 (559)
                      ..+
T Consensus        84 ~~~   86 (195)
T COG4709          84 ALI   86 (195)
T ss_pred             HHH
Confidence            433

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=88.79  E-value=0.52  Score=51.03  Aligned_cols=104  Identities=14%  Similarity=0.166  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEE
Q 008614          392 PDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKR  471 (559)
Q Consensus       392 p~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~  471 (559)
                      |+.||......--...+++...|.|+-..-++.++...+.+.++.+.++++.|+.+++.|++++|.|-+..  .     .
T Consensus        23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--q-----i   95 (1283)
T KOG3542|consen   23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--Q-----I   95 (1283)
T ss_pred             CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec--c-----e
Confidence            34444333322223467788899999999999999999999999999999999999999999999987642  1     3


Q ss_pred             ecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEe
Q 008614          472 QEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLK  515 (559)
Q Consensus       472 l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~  515 (559)
                      +-+-.+||...     .++        |+.+.--+..+|+.+++
T Consensus        96 ~mp~~~fgkr~-----g~~--------r~~nclllq~semivid  126 (1283)
T KOG3542|consen   96 YMPYGCFGKRT-----GQN--------RTHNCLLLQESEMIVID  126 (1283)
T ss_pred             ecCcccccccc-----ccc--------cccceeeecccceeeee
Confidence            33444566421     111        77778888888888874

>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT)

Probab=87.02  E-value=3.4  Score=38.42  Aligned_cols=56  Identities=14%  Similarity=0.291  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--hcCCCHHHHHhcC--CHHHHHHHHHHH
Q 008614          346 QKLRQIKHWKHFKDISTFVRAKIREAKRENLLL--KHDIHIDSLVSDL--PDDTAKQVKLHF  403 (559)
Q Consensus       346 ~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~ll~~L--p~~Lr~~i~~~l  403 (559)
                      +-+++++++++  ++|++-++++.+||+-....  ..|.+|+++.++|  |.++-+++..+.
T Consensus         5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~   64 (181)
T PF08006_consen    5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY   64 (181)
T ss_pred             HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            45788999997  69999999999999987764  4578899999997  667777776554

>PLN03223 Polycystin cation channel protein; Provisional

Probab=85.29  E-value=35  Score=41.05  Aligned_cols=23  Identities=13%  Similarity=-0.214  Sum_probs=17.0

Q ss_pred             eehhhhHHHHHHHHHHHHHHHhh
Q 008614           65 ITATVIRSILDFLKLLHISSELR   87 (559)
Q Consensus        65 ~~~~~~~~~~d~~f~~Di~l~f~   87 (559)
                      ..|.++|++.-++.+.=|++-|.
T Consensus      1213 SfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223       1213 SGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Confidence            46888888887777777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	559
1wgp_A	137	Solution Structure Of The Cnmp-Binding Domain From		3e-17

>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 414 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGL 469
           FEN ++  LD +C  LKP  F+E++ ++ EG+ ++EMLF++ G++   +    +S     
Sbjct: 14  FENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNR 73
Query: 470 KRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRR 528
              ++G++CG+E++ WA +  S   +LP STRT+ A T VE F L  DELK   +  RR
Sbjct: 74  SLLKEGDFCGDELLTWALDPKSG-SNLPSSTRTVKALTEVEAFALIADELKFVASQFRR 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	559
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	4e-25
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	1e-23
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	1e-22
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	4e-21
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	6e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-07
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	8e-06
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-07
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	5e-05
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-06
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	2e-04
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	1e-06
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	4e-05
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	5e-06
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	5e-06
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	7e-06
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	3e-04
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	6e-04
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	8e-04
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	9e-04

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  102 bits (256), Expect = 4e-25
 Identities = 34/205 (16%), Positives = 78/205 (38%), Gaps = 14/205 (6%)

Query: 330 LIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVS 389
           +  RM S  +  H    + + +K +     +   +  ++ E  +    + + I +  L+ 
Sbjct: 3   MDQRMYSRRSLYH---TRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLK 59

Query: 390 DLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHE 449
           D PD+    + +H  + LL Q+  FE+     L  L   +K  F +    +I +G+++  
Sbjct: 60  DFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQA 118

Query: 450 MLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNV 509
           + FV  G + +   +    L     G+  G + +            +  +   + A T  
Sbjct: 119 IYFVCSGSMEVLKDNT--VLAILGKGDLIGSDSLTKE--------QVIKTNANVKALTYC 168

Query: 510 EGFTLKTDELKHGIALHRRFNQSVS 534
           +   +    L+  + L+  + Q   
Sbjct: 169 DLQYISLKGLREVLRLYPEYAQKFV 193

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 97.3 bits (243), Expect = 1e-23
 Identities = 30/196 (15%), Positives = 71/196 (36%), Gaps = 12/196 (6%)

Query: 338 TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAK 397
            + + +  +KL+Q++ +  ++ + + +R KI +   E            +  ++ +   +
Sbjct: 4   DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYY-EYRYRGKMFDERHIFREVSESIRQ 62

Query: 398 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQ 457
            V  +  R+L+  +  F   +   +  +   L+   F     +I EG     M F+ +G 
Sbjct: 63  DVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGI 122

Query: 458 ISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTD 517
           + I     +I      DG+Y GE  +   E              ++   T    F+L   
Sbjct: 123 VDIIMSDGVI-ATSLSDGSYFGEICLLTRER----------RVASVKCETYCTLFSLSVQ 171

Query: 518 ELKHGIALHRRFNQSV 533
                +       +++
Sbjct: 172 HFNQVLDEFPAMRKTM 187

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 95.1 bits (237), Expect = 1e-22
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 15/184 (8%)

Query: 338 TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAK 397
            +   +  +K +Q++ +  F  +    R KI +   E+         DS++ +L     +
Sbjct: 5   DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDY-YEHRYQGKMFDEDSILGELNGPLRE 63

Query: 398 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQ 457
           ++     R L+  M  F N +   +  +   LK   F     II EG    +M F+  G 
Sbjct: 64  KIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV 123

Query: 458 ISIYSKS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKT 516
           +S+ +K  K + L    DG+Y GE  +                T ++ A T    ++L  
Sbjct: 124 VSVLTKGNKEMKLS---DGSYFGEICLL----------TRGRRTASVRADTYCRLYSLSV 170

Query: 517 DELK 520
           D   
Sbjct: 171 DNFN 174

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 88.7 bits (220), Expect = 4e-21
 Identities = 45/133 (33%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 404 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK 463
           G + + ++  FEN ++  LD +C  LKP  F+E++ ++ EG+ ++EMLF++ G++   + 
Sbjct: 4   GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 63

Query: 464 SKLIGLKRQ----EDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDEL 519
                        ++G++CG+E++ WA +  S   +LP STRT+ A T VE F L  DEL
Sbjct: 64  DGGRSGFYNRSLLKEGDFCGDELLTWALDPKSG-SNLPSSTRTVKALTEVEAFALIADEL 122

Query: 520 KHGIALHRRFNQS 532
           K   +  RR   S
Sbjct: 123 KFVASQFRRSGPS 135

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score = 85.8 bits (213), Expect = 6e-20
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 385 DSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEG 444
           + ++   P D    + +H  R +  +   F    D  L  L    + V  +    I   G
Sbjct: 6   EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65

Query: 445 ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTII 504
           ES+  + FV+ G + +    +++ +     G+  G+     A            S   + 
Sbjct: 66  ESVDSLCFVVSGSLEVIQDDEVVAIL--GKGDVFGDVFWKEATL--------AQSCANVR 115

Query: 505 AHTNVEGFTLKTDELKHGIALHRRFNQSVS 534
           A T  +   +K D L+  +  +  F+ S S
Sbjct: 116 ALTYCDLHVIKRDALQKVLEFYTAFSHSFS 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 68/467 (14%), Positives = 129/467 (27%), Gaps = 132/467 (28%)

Query: 152 FSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWY 211
            S      ++     V  T  LF         +      +   +V   L+  + F  L  
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLF-------WTLLSKQEEMVQKFVEEVLRINYKF--LM- 95

Query: 212 YYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYN-FGIYKD 270
                      +      +  +  Y+         +L ND+   +  N +R   +   + 
Sbjct: 96  --------SPIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 271 ALQ---------------SG---IVRETYFPKKLLRCL----HWGLQKLSAFGQDLETSD 308
           AL                SG   +  +     K+   +     W    L+       + +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LN-LKNC-NSPE 196

Query: 309 DVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQI----------------- 351
            V E +  +   I     +        +   R H I  +LR++                 
Sbjct: 197 TVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 352 --KHWKHF------------KDISTFVRAKIR-------------EAKRENLLLKHDIHI 384
             K W  F            K ++ F+ A                  + ++LLLK+   +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---L 311

Query: 385 DSLVSDLPDDTAKQVKLH---FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTII 441
           D    DLP +              ++   +  ++NW+  + D L            TTII
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL------------TTII 359

Query: 442 S---------EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSS 492
                     E   + + L V      I   + L+ L   +        +++     S  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 493 HGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLF 539
                 ST +I   +      +K +      ALHR      +  + F
Sbjct: 418 EKQPKESTISI--PSIYLELKVKLENEY---ALHRSIVDHYNIPKTF 459

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 384 IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISE 443
           +D L        +   K     +LL  M   ++   Y    L   L    +    TII E
Sbjct: 103 LDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIRE 162

Query: 444 GESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 480
           G+       +  G + +  K + + + + +D +Y GE
Sbjct: 163 GDQGENFYLIEYGAVDVSKKGQGV-INKLKDHDYFGE 198

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 13/151 (8%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
              +     F   +  S   +  CL+     +  TII +G+       V +G +  Y   
Sbjct: 6   EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVND 65

Query: 465 KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIA 524
             +       G+  GE  +    N   +         T++A ++   + L     +  I 
Sbjct: 66  NKVN--SSGPGSSFGELALM--YNSPRAA--------TVVATSDCLLWALDRLTFRK-IL 112

Query: 525 LHRRFNQSVSFLQLFWRFKTFKQMQMKRRQS 555
           L   F + + +  L       K +    R  
Sbjct: 113 LGSSFKKRLMYDDLLKSMPVLKSLTTYDRAK 143

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 21/126 (16%)

Query: 406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSK 465
           + +  +   ++ E      +   +    +++   II++G+       V  G++ I  K K
Sbjct: 267 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRK 326

Query: 466 ---------LIGLKRQEDGNYCGE-EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLK 515
                     + + R   G Y GE  ++           + P +  +  A   V+   + 
Sbjct: 327 GKSEVEENGAVEIARCFRGQYFGELALVT----------NKPRAA-SAHAIGTVKCLAMD 375

Query: 516 TDELKH 521
               + 
Sbjct: 376 VQAFER 381

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 17/154 (11%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
           +     +  F+N +   +  +   +      E   +I +G+       +  G   IY K 
Sbjct: 144 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC 203

Query: 465 KLIG--LKRQEDGNYCGEEIIDWAENQSSSHGHLPISTR--TIIAHTNVEGFTLKTDELK 520
             +G  +   ++    GE  +            +  + +  TI A +    + L     +
Sbjct: 204 DGVGRCVGNYDNRGSFGELAL------------MYNTPKAATITATSPGALWGLDRVTFR 251

Query: 521 HGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQ 554
             I +     +   +          K +++  R 
Sbjct: 252 R-IIVKNNAKKRKMYESFIESLPFLKSLEVSERL 284

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 384 IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISE 443
           ID             +K       L  +  F++  +  L  L   L+   +     II +
Sbjct: 135 IDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQ 194

Query: 444 GESIHEMLFVLEGQISIYSK----SKLIGLKRQEDGNYCGE 480
           G        + +G++++  +       + L+    G++ GE
Sbjct: 195 GARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGE 235

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 414 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQE 473
            +N E   +  +  C+ PV + + + II EG+    +  + +G++ +  +   +      
Sbjct: 47  MKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC--TMG 104

Query: 474 DGNYCGE-EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALH--RRFN 530
            G   GE  I+                T T+    NV+ + +     +  +      +  
Sbjct: 105 PGKVFGELAILYNCT-----------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 153

Query: 531 QSVSFLQLFWRFKTFKQMQMKR 552
           + + FL+    F++  +  + +
Sbjct: 154 EYMEFLKSVPTFQSLPEEILSK 175

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
              L ++   E+ E +    +   L+PV F +   I+ +GE   +   + EG  S+  + 
Sbjct: 247 EEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRR 306

Query: 465 ----KLIGLKRQEDGNYCGE 480
               + + + R    +Y GE
Sbjct: 307 SPNEEYVEVGRLGPSDYFGE 326

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 19/142 (13%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 414 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQE 473
           F + +D     +   + PV      T+I +G        V +G++ +Y   + +      
Sbjct: 138 FAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVT--NIS 195

Query: 474 DGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSV 533
           +G   GE  +        +         T+ A T+++ + +  D  +  I +     +  
Sbjct: 196 EGGSFGELALI--YGTPRAA--------TVKAKTDLKLWGIDRDSYRR-ILMGSTLRKRK 244

Query: 534 SFLQLFWRFKTFKQMQMKRRQS 555
            + +   +    + ++   R +
Sbjct: 245 MYEEFLSKVSILESLEKWERLT 266

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 21/144 (14%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
              L ++   E+ + +    +   L+PV F +   I+ +GE   E   +LEG  ++  + 
Sbjct: 156 EEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRR 215

Query: 465 ----KLIGLKRQEDGNYCGE-EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDEL 519
               + + + R    +Y GE  ++           + P    T++A   ++   L     
Sbjct: 216 SENEEFVEVGRLGPSDYFGEIALLM----------NRP-KAATVVARGPLKCVKLDRPRF 264

Query: 520 KHGIA-----LHRRFNQSVSFLQL 538
           +  +      L R   Q  SF+ L
Sbjct: 265 ERVLGPCSDILKRNIQQYNSFVSL 288

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 21/151 (13%), Positives = 56/151 (37%), Gaps = 13/151 (8%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
              + +   F + +D     +   + PV F    T+I +G+       + +G++ +Y  +
Sbjct: 38  AKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN 97

Query: 465 KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIA 524
           +        +G   GE  + +   +++          T+ A TNV+ + +  D  +  I 
Sbjct: 98  EWAT--SVGEGGSFGELALIYGTPRAA----------TVKAKTNVKLWGIDRDSYRR-IL 144

Query: 525 LHRRFNQSVSFLQLFWRFKTFKQMQMKRRQS 555
           +     +   + +   +    + +    R +
Sbjct: 145 MGSTLRKRKMYEEFLSKVSILESLDKWERLT 175

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
             L+  +  F+      L  +   L+         I   GE    M FV+EG +S+ + +
Sbjct: 10  WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 69

Query: 465 KLIGLKRQEDGNYCGE 480
                     G + GE
Sbjct: 70  P----VELGPGAFFGE 81

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 414 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS---KLIGLK 470
             +     L  L  C K + F +   +  + + I ++L +LEG +     S   K + + 
Sbjct: 7   HHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEID 66

Query: 471 RQEDGNYCGE 480
             +       
Sbjct: 67  EIKPVQIIAS 76

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 11/79 (13%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
             ++ +++ F ++ +  + +LC  ++         +++EG+    +L +L G++++    
Sbjct: 38  LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDI 97

Query: 465 ---KLIGLKRQEDGNYCGE 480
               +  + +   G   GE
Sbjct: 98  PNKGIQTIAKVGAGAIIGE 116

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 407 LLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKL 466
            L   + F +  D  L  +    +   F   + I  E      ++ +LEG + ++  +  
Sbjct: 7   RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGG 66

Query: 467 IGLKRQ------EDGNYCGE 480
            G            G   G 
Sbjct: 67  AGSAANSTVCSVVPGAIFGV 86

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464
           +  +      +N E   +  +  C+ PV + + + II EG+    +  + +G++ +  + 
Sbjct: 22  KEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG 81

Query: 465 KLIGLKRQEDGNYCGE 480
             +       G   GE
Sbjct: 82  VKLC--TMGPGKVFGE 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	559
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	100.0
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	100.0
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.98
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.97
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.87
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.82
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.8
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.76
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.69
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.69
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.69
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.67
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.66
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.65
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.65
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.64
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.64
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.64
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.62
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.62
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.62
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.6
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.59
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.58
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.57
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.57
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.57
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.56
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.56
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.55
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.54
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.54
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.53
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.53
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.53
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.52
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.51
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.5
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.5
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.47
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.47
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.47
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.46
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.45
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.45
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.43
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.42
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.41
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.41
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.41
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.39
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.38
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.36
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.33
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.32
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.28
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.27
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.26
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.23
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.22
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.13
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.05
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.03
3b02_A	195	Transcriptional regulator, CRP family; structural	99.01
1xl4_A	301	Inward rectifier potassium channel; integral membr	98.93
1p7b_A	333	Integral membrane channel and cytosolic domains; t	98.91
3um7_A	309	Potassium channel subfamily K member 4; potassium	98.89
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	98.84
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.71
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	98.57
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.56
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.55
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.43
3um7_A	309	Potassium channel subfamily K member 4; potassium	98.39
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.37
1lnq_A	336	MTHK channels, potassium channel related protein;	98.24
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	97.81
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	95.51
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	94.81

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=100.00  E-value=3.1e-36  Score=312.10  Aligned_cols=181  Identities=17%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 008614          283 PKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDIST  362 (559)
Q Consensus       283 ~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~  362 (559)
                      +..|..|+||+++||||+||||++|.|..|+++++++|++|.+++|+.+|.+++...+..  ++                
T Consensus       159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~--~~----------------  220 (355)
T 3beh_A          159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV--RR----------------  220 (355)
T ss_dssp             HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
T ss_pred             cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
Confidence            446889999999999999999999999999999999999999999999999986543211  10                


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEc
Q 008614          363 FVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIIS  442 (559)
Q Consensus       363 ~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~  442 (559)
                            +++.+                              +.+.++++|+|++++++.+++++..++++.|+|||.|++
T Consensus       221 ------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~  264 (355)
T 3beh_A          221 ------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR  264 (355)
T ss_dssp             ------HHHHH------------------------------HHC------------------------------------
T ss_pred             ------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence                  00100                              246788999999999999999999999999999999999


Q ss_pred             cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHH
Q 008614          443 EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHG  522 (559)
Q Consensus       443 ~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~l  522 (559)
                      +||.++++|||.+|.|++...+    ...+++|++|||.++.   .+.       ++.++++|.++|+++.+++++|.++
T Consensus       265 ~G~~~~~ly~I~~G~v~v~~~~----~~~l~~G~~fGe~~~l---~~~-------~~~~~~~A~~~~~l~~i~~~~f~~l  330 (355)
T 3beh_A          265 IGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI---SGE-------PRSATVSAATTVSLLSLHSADFQML  330 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcCceEEEEEeeEEEEEECC----eeEECCCCEEeehHHh---CCC-------CcceEEEECccEEEEEEeHHHHHHH
Confidence            9999999999999999976544    2589999999999763   322       1789999999999999999999999


Q ss_pred             HHhcHhhhh
Q 008614          523 IALHRRFNQ  531 (559)
Q Consensus       523 l~~~P~~~~  531 (559)
                      ++++|++.+
T Consensus       331 l~~~p~~~~  339 (355)
T 3beh_A          331 CSSSPEIAE  339 (355)
T ss_dssp             ---------
T ss_pred             HHHCHHHHH
Confidence            999999854

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=100.00  E-value=1e-31  Score=254.65  Aligned_cols=183  Identities=15%  Similarity=0.244  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCC
Q 008614          336 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE  415 (559)
Q Consensus       336 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~  415 (559)
                      ++.++..+++++|+.+++||+.+++|++||.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|+
T Consensus         2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~   80 (198)
T 2ptm_A            2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV   80 (198)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence            455677789999999999999999999999999999999998 4778999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008614          416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH  495 (559)
Q Consensus       416 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~  495 (559)
                      +++++++..++..++++.|.|||+|+++||.++++|||.+|.|++...+|. .+..+++|++|||.++.  .+.+     
T Consensus        81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-~~~~l~~G~~fGe~~~~--~~~~-----  152 (198)
T 2ptm_A           81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-IATSLSDGSYFGEICLL--TRER-----  152 (198)
T ss_dssp             TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-EEEEECTTCEESCHHHH--HSSC-----
T ss_pred             cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-EEEEecCCCEechHHHc--CCCc-----
Confidence            999999999999999999999999999999999999999999998776665 67899999999998764  2322     


Q ss_pred             CCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          496 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       496 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                         +.++++|.++|+++.|++++|.++++++|++.
T Consensus       153 ---~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~  184 (198)
T 2ptm_A          153 ---RVASVKCETYCTLFSLSVQHFNQVLDEFPAMR  184 (198)
T ss_dssp             ---CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred             ---cceEEEEeeEEEEEEEeHHHHHHHHHHChHHH
Confidence               88999999999999999999999999999985

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.98  E-value=2.8e-31  Score=252.61  Aligned_cols=183  Identities=20%  Similarity=0.269  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCC
Q 008614          336 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE  415 (559)
Q Consensus       336 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~  415 (559)
                      ++.++..+++++|+.+++||+.+++|++||.||++||+|.|+. ++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus         3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~   81 (202)
T 3bpz_A            3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA   81 (202)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence            4556777899999999999999999999999999999999984 788999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008614          416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH  495 (559)
Q Consensus       416 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~  495 (559)
                      +++++++..++..++++.|.|||+|+++||.++++|||.+|.|++...+|.  ...+++|++|||.+++  .+.+     
T Consensus        82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~--~~~l~~G~~fGe~~~~--~~~~-----  152 (202)
T 3bpz_A           82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK--EMKLSDGSYFGEICLL--TRGR-----  152 (202)
T ss_dssp             TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSC--CEEEETTCEECHHHHH--HCSB-----
T ss_pred             cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCe--EEEEcCCCEeccHHHh--cCCC-----
Confidence            999999999999999999999999999999999999999999998876664  3478999999998774  2322     


Q ss_pred             CCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          496 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       496 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                         +.++++|.++|+++.|++++|.++++++|++..
T Consensus       153 ---~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~  185 (202)
T 3bpz_A          153 ---RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRR  185 (202)
T ss_dssp             ---CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHH
T ss_pred             ---cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHH
Confidence               789999999999999999999999999999853

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.97  E-value=7.3e-32  Score=258.54  Aligned_cols=185  Identities=17%  Similarity=0.322  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCC
Q 008614          336 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE  415 (559)
Q Consensus       336 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~  415 (559)
                      ++.++..+++++|+.+++||+++++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ ++|+|+
T Consensus         6 ~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~   84 (212)
T 3ukn_A            6 RMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFE   84 (212)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhh
Confidence            5566677899999999999999999999999999999999999999999999999999999999999998877 899999


Q ss_pred             CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008614          416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH  495 (559)
Q Consensus       416 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~  495 (559)
                      ++++++++.++..++++.|.|||+|+++||.++++|||.+|.|++..++ . .+..+++|++|||.++.  .+.      
T Consensus        85 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~-~~~~l~~G~~fGe~~~~--~~~------  154 (212)
T 3ukn_A           85 SASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-T-VLAILGKGDLIGSDSLT--KEQ------  154 (212)
T ss_dssp             TCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-C-EEEEECTTCEEECSCCS--SSS------
T ss_pred             cCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-e-EEEEecCCCCcCcHHhc--cCC------
Confidence            9999999999999999999999999999999999999999999988644 3 57899999999998763  121      


Q ss_pred             CCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          496 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       496 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .+++.++++|.++|+++.|++++|.++++++|++..
T Consensus       155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~  190 (212)
T 3ukn_A          155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQ  190 (212)
T ss_dssp             CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence            112889999999999999999999999999999964

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.87  E-value=4e-22  Score=192.36  Aligned_cols=210  Identities=13%  Similarity=0.112  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhh
Q 008614           25 IENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQ  104 (559)
Q Consensus        25 ~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~  104 (559)
                      .||.+++++.++++++.++..+ +         ..+......+..+|.++|++|.+|++++|.++..             
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~-~---------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~-------------   65 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECT-M---------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD-------------   65 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHH-H---------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh-c---------ccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc-------------
Confidence            5888877777777654432100 0         1112234467899999999999999999998632             


Q ss_pred             hhcccccCCceeecChhhHhhhhhhhhhhhcccccceeeeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 008614          105 QLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVI  184 (559)
Q Consensus       105 ~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i  184 (559)
                                     +++=.++ +++|++|++|++....    +.. +......++.+|++|++|++|+.+...+....+
T Consensus        66 ---------------~~~y~~~-~iiDllailP~~~~~~----~~~-~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l  124 (223)
T 1orq_C           66 ---------------PAGYVKK-TLYEIPALVPAGLLAL----IEG-HLAGLGLFRLVRLLRFLRILLIISRGSKFLSAI  124 (223)
T ss_dssp             ---------------HHHHHHH-HHHHCTTHHHHHHHHH----HHH-HHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             ---------------HHHHHHH-hHHHHHHHHHHHHHHH----Hhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           1122244 8999999999975431    000 000012345555555555555544222211111


Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCcccccccccccCCCCCCCCcc
Q 008614          185 ADAT-WGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRY  263 (559)
Q Consensus       185 ~~~~-~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~  263 (559)
                      .... ..++...++..++..|+.||++|.+..                           ++                   
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------~~-------------------  158 (223)
T 1orq_C          125 ADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------PD-------------------  158 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------SS-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CC-------------------
Confidence            1110 012333344445568999999887531                           00                   


Q ss_pred             ccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          264 NFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       264 ~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                                     +++....|..|+||+++||||+||||++|.|..|++++++.|++|..++|+.+|.+++...
T Consensus       159 ---------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~  219 (223)
T 1orq_C          159 ---------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ  219 (223)
T ss_dssp             ---------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0112236889999999999999999999999999999999999999999999999987654

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.82  E-value=1e-19  Score=165.13  Aligned_cols=138  Identities=19%  Similarity=0.298  Sum_probs=116.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc
Q 008614          384 IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK  463 (559)
Q Consensus       384 ~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~  463 (559)
                      .+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|.+|+.|+++||.++.+|||.+|.|++..+
T Consensus         5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~   84 (160)
T 4f8a_A            5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD   84 (160)
T ss_dssp             ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred             hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999998774


Q ss_pred             CceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          464 SKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       464 ~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +.  .+..+++|++|||.++.   ..     ...++.++++|.++|+++.+++++|.++++++|++..
T Consensus        85 ~~--~~~~~~~G~~fG~~~~~---~~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  142 (160)
T 4f8a_A           85 DE--VVAILGKGDVFGDVFWK---EA-----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSH  142 (160)
T ss_dssp             TE--EEEEEETTCEEECCTTT---CS-----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             CE--EEEEecCCCEeCcHHHh---cC-----cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHH
Confidence            43  57899999999998763   22     0012789999999999999999999999999999953

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.80  E-value=2.7e-19  Score=192.34  Aligned_cols=230  Identities=11%  Similarity=0.164  Sum_probs=140.5

Q ss_pred             cCC-ChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceE-----------------eeCCCcceehhhhHHHHHHHH
Q 008614           17 YRK-AIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCI-----------------HCNDTLGITATVIRSILDFLK   78 (559)
Q Consensus        17 ~P~-s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~f   78 (559)
                      +|+ |...+.++.++++++++++++..+. ..|.........                 .........+.++|.+++++|
T Consensus       174 ~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF  252 (514)
T 2r9r_B          174 YPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF  252 (514)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence            465 5777888888777777765543321 011110000000                 000112346789999999999


Q ss_pred             HHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccceeeeeeccCCCC-c----
Q 008614           79 LLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGF-S----  153 (559)
Q Consensus        79 ~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~~~~~~~~~-~----  153 (559)
                      .+|++++|.++--                     +.....      +.|.++|+++++|+.+....   +.... +    
T Consensus       253 tiE~ilR~~~~~~---------------------k~~Y~k------s~wniiDli~iip~~i~l~~---~~~~~~~~~~~  302 (514)
T 2r9r_B          253 SFEFLVRFFACPS---------------------KAGFFT------NIMNIIDIVAIIPYYVTIFL---TESNKSVLQFQ  302 (514)
T ss_dssp             HHHHHHHHHHSSC---------------------SSSSTT------SHHHHHHHHTTHHHHHHHHH---HHTSCSHHHHH
T ss_pred             HHHHHHHHHhCCc---------------------HHHHHh------chhHHHHHHHHHHHHHHHHh---hhccccchhhh
Confidence            9999999997521                     111222      44999999999998643221   11111 1    


Q ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHh---hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccC
Q 008614          154 TAMTFFVLQYLLRVIRTYFLFTDAIEV---SGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHT  230 (559)
Q Consensus       154 ~~~~~~~l~rl~Rl~R~~~l~~~~~~~---~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~  230 (559)
                      .....++++|++|++|++|+.+.....   ...+..+ ...+...+++.++..+++||+.|++..               
T Consensus       303 ~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~e~---------------  366 (514)
T 2r9r_B          303 NVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFAEA---------------  366 (514)
T ss_dssp             TTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhheeec---------------
Confidence            112355666666666666666543222   1111111 112222223333447778887765321               


Q ss_pred             CCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCCh
Q 008614          231 GRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDV  310 (559)
Q Consensus       231 ~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~  310 (559)
                                       |.                             +++.+..|..|+||+++||||+||||+.|.|.
T Consensus       367 -----------------~~-----------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~  400 (514)
T 2r9r_B          367 -----------------DE-----------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTI  400 (514)
T ss_dssp             -----------------TC-----------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSH
T ss_pred             -----------------cC-----------------------------CCccccchhhhhheeeeEEEecccCCCCCCCc
Confidence                             00                             11223457889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          311 GENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       311 ~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      .++++++++|++|.+++++.+|.+.+..+
T Consensus       401 ~gr~f~~~~~l~G~~~l~l~iavI~~~f~  429 (514)
T 2r9r_B          401 GGKIVGSLCAIAGVLTIALPVPVIVSNFN  429 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             chHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999985444

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.76  E-value=3.7e-18  Score=151.34  Aligned_cols=131  Identities=17%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             cCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEE
Q 008614          390 DLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGL  469 (559)
Q Consensus       390 ~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~  469 (559)
                      ++|+.+|.+...+...++++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++..+ |. .+
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-g~-~~   84 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-GV-KL   84 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEET-TE-EE
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEEC-CE-EE
Confidence            68888999988999999999999999999999999999999999999999999999999999999999998654 43 67


Q ss_pred             EEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhh
Q 008614          470 KRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS  532 (559)
Q Consensus       470 ~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~  532 (559)
                      ..+++|++|||.++.  .+.+        +.++++|.++|+++.|++++|.++++++|.++++
T Consensus        85 ~~~~~G~~fGe~~~l--~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~  137 (139)
T 3ocp_A           85 CTMGPGKVFGELAIL--YNCT--------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT  137 (139)
T ss_dssp             EEECTTCEESCHHHH--HCCC--------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred             EEeCCCCEeccHHHH--CCCC--------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence            899999999999764  2322        7899999999999999999999999999998654

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.69  E-value=1.2e-15  Score=142.56  Aligned_cols=138  Identities=13%  Similarity=0.232  Sum_probs=114.7

Q ss_pred             HHHHHhcCCHHH----HHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEE
Q 008614          384 IDSLVSDLPDDT----AKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQIS  459 (559)
Q Consensus       384 ~~~ll~~Lp~~L----r~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~  459 (559)
                      +....+.++|.|    +.+...+...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|+
T Consensus        13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~   92 (187)
T 3gyd_A           13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN   92 (187)
T ss_dssp             HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred             cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence            334444444433    3444455567899999999999999999999999999999999999999999999999999999


Q ss_pred             EEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          460 IYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       460 v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +..  .+| ...+..+++|++|||.++.  .+.+        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l--~~~~--------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~  157 (187)
T 3gyd_A           93 VIKDIPNKGIQTIAKVGAGAIIGEMSMI--DGMP--------RSASCVASLPTDFAVLSRDALYQLLANMPKLGN  157 (187)
T ss_dssp             EEEEETTTEEEEEEEEETTCEESHHHHH--HCCC--------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             EEEECCCCCeEEEEEccCCCeeeeHHHh--CCCC--------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHH
Confidence            654  344 4467799999999999763  2322        789999999999999999999999999999964

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.69  E-value=2.5e-16  Score=143.25  Aligned_cols=124  Identities=13%  Similarity=0.128  Sum_probs=108.2

Q ss_pred             HHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCC
Q 008614          398 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDG  475 (559)
Q Consensus       398 ~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~-~~~~~~l~~G  475 (559)
                      +-......+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|++.. .+| ...+..+++|
T Consensus        30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G  109 (161)
T 3idb_B           30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR  109 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred             HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence            33345567899999999999999999999999999999999999999999999999999999654 333 4557799999


Q ss_pred             CeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          476 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       476 ~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ++|||.++.  .+.+        +.++++|.++|+++.|++++|.++++++|.++.
T Consensus       110 ~~fGe~~~~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~  155 (161)
T 3idb_B          110 GSFGELALM--YNTP--------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR  155 (161)
T ss_dssp             CEECGGGGT--CCCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred             CEechHHHH--cCCC--------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence            999998774  2222        789999999999999999999999999999864

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.69  E-value=7.6e-16  Score=137.48  Aligned_cols=117  Identities=18%  Similarity=0.201  Sum_probs=103.7

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~  481 (559)
                      .+.++++|+|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++..   +++...+..+++|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            4678999999999999999999999999999999999999999999999999999764   3344567899999999998


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ++.   ...       ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        84 ~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~  123 (149)
T 2pqq_A           84 SLF---DPG-------PRTATGTALTEVKLLALGHGDLQPWLNVRPEVAT  123 (149)
T ss_dssp             GGT---SCE-------ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHH
T ss_pred             Hhc---CCC-------CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHH
Confidence            763   221       1788999999999999999999999999999853

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.67  E-value=6.9e-16  Score=136.67  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=100.9

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEE---EEEecCCCee
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIG---LKRQEDGNYC  478 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~---~~~l~~G~~f  478 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|++..  .+| ...   +..+++|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            3578899999999999999999999999999999999999999999999999999764  333 334   7799999999


Q ss_pred             ehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       479 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ||.++.   ...       ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        85 G~~~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~  127 (142)
T 3mdp_A           85 GVSSLI---KPY-------HYTSSARATKPVRVVDINGARLREMSENNQALGQ  127 (142)
T ss_dssp             CGGGSS---TTC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             chHHHc---CCC-------CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHH
Confidence            998773   222       1788999999999999999999999999999963

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.66  E-value=1.2e-16  Score=141.05  Aligned_cols=126  Identities=35%  Similarity=0.626  Sum_probs=103.3

Q ss_pred             HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCce-EEEE--EecCCCeeehh
Q 008614          406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKL-IGLK--RQEDGNYCGEE  481 (559)
Q Consensus       406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~-~~~~--~l~~G~~fGe~  481 (559)
                      ++++++|+|++++++.++.++..++.+.|.+||+|+++||.++.+|||.+|.|++.. .+|. ..+.  .+++|++|||.
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~   85 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence            467899999999999999999999999999999999999999999999999999653 3332 2234  99999999998


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS  532 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~  532 (559)
                      ++.+.+... +....|.+.++++|.++|+++.|++++|.++++++|+++++
T Consensus        86 ~l~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k  135 (137)
T 1wgp_A           86 LLTWALDPK-SGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS  135 (137)
T ss_dssp             HHHHHHCSS-CCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred             HHHHHhccc-cccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence            741113432 11111236789999999999999999999999999999764

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.65  E-value=1.3e-15  Score=137.56  Aligned_cols=118  Identities=16%  Similarity=0.217  Sum_probs=105.0

Q ss_pred             HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008614          402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~  481 (559)
                      ....++++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++.++ . .+..+++|++|||.
T Consensus        34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~-~-~~~~~~~G~~fGe~  111 (154)
T 3pna_A           34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-E-WATSVGEGGSFGEL  111 (154)
T ss_dssp             HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETT-E-EEEEECTTCEECCH
T ss_pred             HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECC-E-EEEEecCCCEeeeh
Confidence            344678899999999999999999999999999999999999999999999999999988744 3 57799999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ++.  .+.+        +.++++|.++|+++.|++++|.++++++|..+.
T Consensus       112 ~~~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~  151 (154)
T 3pna_A          112 ALI--YGTP--------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR  151 (154)
T ss_dssp             HHH--HCCC--------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred             Hhh--cCCC--------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence            774  2332        789999999999999999999999999999864

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.65  E-value=2.5e-15  Score=132.50  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=101.5

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++...+    ...+++|++||+.++.
T Consensus        10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~~~~~~G~~~G~~~~~   85 (138)
T 1vp6_A           10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI   85 (138)
T ss_dssp             HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----CEEECTTCEECHHHHH
T ss_pred             HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----cceECCCCEeeehHhc
Confidence            468999999999999999999999999999999999999999999999999999987544    2488999999999764


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                        .+.+        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        86 --~~~~--------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~  122 (138)
T 1vp6_A           86 --SGEP--------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAE  122 (138)
T ss_dssp             --HCCC--------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             --cCCC--------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHH
Confidence              2222        778999999999999999999999999999853

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.64  E-value=1.2e-15  Score=153.27  Aligned_cols=134  Identities=16%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCc
Q 008614          386 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSK  465 (559)
Q Consensus       386 ~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~  465 (559)
                      .-..++|+..|.+...+...+.++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++..++ 
T Consensus        19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g-   97 (299)
T 3shr_A           19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG-   97 (299)
T ss_dssp             ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-
Confidence            3456799999999999999999999999999999999999999999999999999999999999999999999986644 


Q ss_pred             eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          466 LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       466 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      . .+..+.+|++|||.++.  .+.+        |.+|++|.++|+++.|++++|.+++..+|..+.
T Consensus        98 ~-~~~~~~~G~~fGe~~ll--~~~~--------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~  152 (299)
T 3shr_A           98 V-KLCTMGPGKVFGELAIL--YNCT--------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH  152 (299)
T ss_dssp             E-EEEEECTTCEESCSGGG--TTTB--------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred             E-EEEEeCCCCeeeHhHHh--cCCC--------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence            3 57899999999999774  2322        889999999999999999999999999998653

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.64  E-value=2.2e-15  Score=135.30  Aligned_cols=118  Identities=17%  Similarity=0.222  Sum_probs=102.0

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~  481 (559)
                      .+.++++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++..  .+| ...+..+++|++|||.
T Consensus        11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   90 (154)
T 2z69_A           11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   90 (154)
T ss_dssp             HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred             HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence            4678999999999999999999999999999999999999999999999999999764  233 3457799999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .+.   ...      |.+.++++|.++|+++.|++++|.++++++|++..
T Consensus        91 ~~~---~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~  131 (154)
T 2z69_A           91 MMF---MDT------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL  131 (154)
T ss_dssp             GGG---SSC------SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred             hhc---cCC------CCCceEEEEccceEEEEECHHHHHHHHHHChHHHH
Confidence            763   222      22678999999999999999999999999999853

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.64  E-value=2.9e-15  Score=134.34  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=66.5

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS------E--------TTRAHKINQKLRQI  351 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s------~--------~~~~~~~~~~~~~i  351 (559)
                      |..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|++++      .        .++.++..++++++
T Consensus        53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i  132 (148)
T 3vou_A           53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI  132 (148)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677999999999999999999999999999999999999999999999983      1        22223445668899


Q ss_pred             HHHHHhCCCCHHHHHH
Q 008614          352 KHWKHFKDISTFVRAK  367 (559)
Q Consensus       352 ~~~m~~~~lp~~L~~r  367 (559)
                      ++++++++.|++|+.|
T Consensus       133 ~~~~~~~~~~~~L~~R  148 (148)
T 3vou_A          133 EKKLAEHSRQGSLVPR  148 (148)
T ss_dssp             HHHHHHHTTC------
T ss_pred             HHHHHhcCCCcCCCCC
Confidence            9999999999999876

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.62  E-value=6.3e-16  Score=138.92  Aligned_cols=56  Identities=9%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          284 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       284 ~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      ..|..|+||+++|+|||||||++|.|..+++++++.+++|..++|+.+|.+++...
T Consensus        83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~  138 (155)
T 2a9h_A           83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFV  138 (155)
T ss_dssp             TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888999999999999999999999999999999999999999999999996654

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.62  E-value=7.4e-15  Score=137.61  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=102.7

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~  481 (559)
                      ..++++++.|.+++++.++.+...++.+.|.+|++|+++||.++.+|||.+|.|+++.  .+| ...+..+++|++|||.
T Consensus         6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~   85 (194)
T 3dn7_A            6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY   85 (194)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence            4577888999999999999999999999999999999999999999999999999654  334 4557799999999987


Q ss_pred             -hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 -IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 -~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                       ++.   ...       ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        86 ~~~~---~~~-------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  126 (194)
T 3dn7_A           86 MAFQ---KQQ-------PADFYIQSVENCELLSITYTEQENLFERIPALER  126 (194)
T ss_dssp             HHHH---HTC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHH
T ss_pred             HHHh---cCC-------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHH
Confidence             553   322       1788999999999999999999999999999864

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.62  E-value=1.1e-14  Score=138.56  Aligned_cols=114  Identities=12%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             hcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhh
Q 008614          408 LGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       408 l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~  484 (559)
                      |+++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++.  .+| ...+..+++|++|||.++.
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            4689999999999999999999999999999999999999999999999999754  333 4567899999999998764


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                        .+.+        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        81 --~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  117 (216)
T 4ev0_A           81 --DEGE--------RSASAVAVEDTELLALFREDYLALIRRLPLVAH  117 (216)
T ss_dssp             --HCCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             --CCCC--------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHH
Confidence              2322        789999999999999999999999999999864

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.60  E-value=3.6e-16  Score=137.60  Aligned_cols=125  Identities=10%  Similarity=0.133  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeC-CCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEe
Q 008614          394 DTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFS-ERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQ  472 (559)
Q Consensus       394 ~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~-~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l  472 (559)
                      +.|.+-......++++++++|.+++++.++.++..++.+.|. +|++|+++||.++.+|||.+|.|+++..+|..  ..+
T Consensus         4 ~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--~~l   81 (134)
T 2d93_A            4 GSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV--ENL   81 (134)
T ss_dssp             SCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE--EEE
T ss_pred             hhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE--EEe
Confidence            333333333445678899999999999999999999999999 99999999999999999999999988766653  679


Q ss_pred             cCCCeeehhhhhhhhccCCCCCCCCCcccEE-EEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          473 EDGNYCGEEIIDWAENQSSSHGHLPISTRTI-IAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       473 ~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      ++|++|||.++.   ...       ++.+++ +|.++|+++.|++++|.++++++++..
T Consensus        82 ~~G~~fG~~~~~---~~~-------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~  130 (134)
T 2d93_A           82 FMGNSFGITPTL---DKQ-------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSG  130 (134)
T ss_dssp             CTTCEESCCSSS---CCE-------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSSS
T ss_pred             cCCCccChhHhc---CCC-------cceeEEEEEecceEEEEEeHHHHHHHHHHHHhcc
Confidence            999999998763   222       166788 999999999999999999999888653

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.59  E-value=2.6e-14  Score=138.35  Aligned_cols=119  Identities=11%  Similarity=0.082  Sum_probs=105.4

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeee
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCG  479 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fG  479 (559)
                      ...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++..  .+| ...+..+++|++||
T Consensus         8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G   87 (237)
T 3fx3_A            8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG   87 (237)
T ss_dssp             HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred             HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence            345788999999999999999999999999999999999999999999999999999764  333 45678999999999


Q ss_pred             hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +..++  .+.+        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        88 ~~~~~--~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  129 (237)
T 3fx3_A           88 EAVAL--RNTP--------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICI  129 (237)
T ss_dssp             HHHHH--HTCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             hHHHh--cCCC--------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHH
Confidence            99764  2322        789999999999999999999999999999864

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2e-14  Score=139.64  Aligned_cols=118  Identities=18%  Similarity=0.261  Sum_probs=105.6

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhh
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~  482 (559)
                      +...+++++++|++++++.+..++..++.+.|.+|+.|+++||.++.+|+|.+|.|+++..++. .+..+++|++|||.+
T Consensus       122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-~~~~l~~g~~fGe~~  200 (246)
T 3of1_A          122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-VINKLKDHDYFGEVA  200 (246)
T ss_dssp             HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-EEEEEETTCEECHHH
T ss_pred             HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-eEEEcCCCCcccHHH
Confidence            4456778899999999999999999999999999999999999999999999999998875543 578999999999997


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +.  .+.+        |.++++|.++|+++.|++++|.+++..+|++.+
T Consensus       201 ~~--~~~~--------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~  239 (246)
T 3of1_A          201 LL--NDLP--------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK  239 (246)
T ss_dssp             HH--HTCB--------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred             Hh--CCCC--------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence            74  2332        899999999999999999999999999999854

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.57  E-value=1.5e-14  Score=125.05  Aligned_cols=58  Identities=10%  Similarity=0.135  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          284 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRA  341 (559)
Q Consensus       284 ~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~  341 (559)
                      ..|..|+||+++|+|||||||++|.|..+++++++.+++|..++|+.+|.+++...+.
T Consensus        60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~  117 (122)
T 2ih3_C           60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR  117 (122)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3488899999999999999999999999999999999999999999999999776543

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.57  E-value=1.4e-14  Score=139.30  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=103.7

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~  481 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++..  . ++...+..+++|++|||.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   84 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL   84 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence            4578999999999999999999999999999999999999999999999999999764  3 334557899999999998


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +++   ...       ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        85 ~~~---~~~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  124 (227)
T 3d0s_A           85 SIF---DPG-------PRTSSATTITEVRAVSMDRDALRSWIADRPEISE  124 (227)
T ss_dssp             HHH---SCS-------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHH
T ss_pred             HHc---CCC-------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence            774   322       1789999999999999999999999999999854

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.57  E-value=2.2e-14  Score=138.23  Aligned_cols=117  Identities=13%  Similarity=0.100  Sum_probs=103.0

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~  481 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++.  .+| ...+..+++|++|||.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            4678999999999999999999999999999999999999999999999999999754  333 4457899999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +++   ...       ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        85 ~~~---~~~-------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  124 (231)
T 3e97_A           85 AVL---AHQ-------ERSASVRALTPVRTLMLHREHFELILRRHPRVLW  124 (231)
T ss_dssp             TTT---CCC-------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred             HHh---CCC-------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence            763   322       2789999999999999999999999999999864

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.56  E-value=2.6e-14  Score=145.78  Aligned_cols=116  Identities=15%  Similarity=0.210  Sum_probs=104.1

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~  482 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++++|||.+|.|+++.  .+|...+..+++|++|||.+
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~   91 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA   91 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence            4688999999999999999999999999999999999999999999999999999764  44544678999999999997


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +.  .+.+        ++++++|.++|+++.|++++|.+++ ++|++..
T Consensus        92 l~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~  129 (333)
T 4ava_A           92 LL--RDSP--------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGE  129 (333)
T ss_dssp             HH--HTCB--------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHH
T ss_pred             hc--CCCC--------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHH
Confidence            74  2332        8899999999999999999999999 9999964

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.56  E-value=5.4e-14  Score=135.85  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhc--CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeee
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGC--LKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCG  479 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~--l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fG  479 (559)
                      ...++++|+|++++++.++.++..  .+.+.|.+|++|+++||.++.+|||.+|.|+++.   +++...+..+++|++||
T Consensus        17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG   96 (232)
T 1zyb_A           17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE   96 (232)
T ss_dssp             HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence            467899999999999999999998  9999999999999999999999999999999754   33345678999999999


Q ss_pred             hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      |.+++   ...      |.+.++++|.++|+++.+++++|.++++++|++..
T Consensus        97 ~~~~~---~~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  139 (232)
T 1zyb_A           97 PQSLF---GMN------TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRL  139 (232)
T ss_dssp             GGGGS---SSC------CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHH
T ss_pred             ehHHh---CCC------CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHH
Confidence            98763   221      22688999999999999999999999999999853

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.55  E-value=8.1e-14  Score=133.02  Aligned_cols=116  Identities=15%  Similarity=0.093  Sum_probs=101.3

Q ss_pred             HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCe--eeh
Q 008614          406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNY--CGE  480 (559)
Q Consensus       406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~--fGe  480 (559)
                      ++++++|+|++++++.++.+...++.+.|.+|++|+++||.++.+|||.+|.|+++.  .+| ...+..+++|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            578999999999999999999999999999999999999999999999999999764  333 455779999999  788


Q ss_pred             hhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          481 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       481 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .++.   ...       ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        83 ~~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~  123 (220)
T 3dv8_A           83 SCIM---RSI-------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVAN  123 (220)
T ss_dssp             GGGC---TTC-------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             HHHh---CCC-------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHH
Confidence            8763   322       1788999999999999999999999999999864

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.9e-14  Score=138.47  Aligned_cols=115  Identities=16%  Similarity=0.209  Sum_probs=103.7

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++++|+|.+|.|++..++.  .+..+++|++|||.++.
T Consensus         6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~--~~~~~~~g~~fGe~~l~   83 (246)
T 3of1_A            6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN--KVNSSGPGSSFGELALM   83 (246)
T ss_dssp             HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS--CCEEECTTCEECHHHHH
T ss_pred             HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE--EEEecCCCCeeehhHHh
Confidence            5688999999999999999999999999999999999999999999999999999886544  36899999999999774


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                        .+.+        +.++++|.++|+++.|++++|.+++.++|..+.
T Consensus        84 --~~~~--------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~  120 (246)
T 3of1_A           84 --YNSP--------RAATVVATSDCLLWALDRLTFRKILLGSSFKKR  120 (246)
T ss_dssp             --HTCC--------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHH
T ss_pred             --cCCC--------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHH
Confidence              2332        889999999999999999999999999997643

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.54  E-value=2.1e-13  Score=131.03  Aligned_cols=118  Identities=13%  Similarity=0.173  Sum_probs=93.0

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~  481 (559)
                      ...+++.++|.+++++.++.+...++.+.|.+|+.|+++||.++.+|||.+|.|+++.  .+ +...+..+++|++|||.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            4567889999999999999999999999999999999999999999999999999764  33 44567899999999998


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhc-----Hhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALH-----RRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~-----P~~~~  531 (559)
                      .++  .+.       +++.++++|.++|+++.+++++|.++++++     |++..
T Consensus        90 ~~~--~~~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~  135 (230)
T 3iwz_A           90 GLF--IES-------DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILY  135 (230)
T ss_dssp             GGT--SCC-------SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHH
T ss_pred             hhh--cCC-------CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHH
Confidence            763  121       127889999999999999999999999999     98853

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.53  E-value=8.6e-15  Score=129.13  Aligned_cols=88  Identities=13%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHhCCCC
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAH---KINQKLRQIKH-WKHFKDIS  361 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~---~~~~~~~~i~~-~m~~~~lp  361 (559)
                      |..|+||+++|+|||||||++|.|..|++++++.|++|++++|+++|.+++...+..   +.+++.+.+++ ..+..+++
T Consensus        44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (137)
T 4h33_A           44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT  123 (137)
T ss_dssp             HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            778999999999999999999999999999999999999999999999995433211   11122222222 23345666


Q ss_pred             HHHHHHHHHHHH
Q 008614          362 TFVRAKIREAKR  373 (559)
Q Consensus       362 ~~L~~rv~~y~~  373 (559)
                      ++.+..+++|.+
T Consensus       124 ~~~i~~l~~~l~  135 (137)
T 4h33_A          124 KEEIAVVEQFLT  135 (137)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHh
Confidence            666666666554

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.53  E-value=7e-14  Score=140.34  Aligned_cols=120  Identities=18%  Similarity=0.324  Sum_probs=105.8

Q ss_pred             HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---C-ceEEEEEecCCCe
Q 008614          402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---S-KLIGLKRQEDGNY  477 (559)
Q Consensus       402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---~-~~~~~~~l~~G~~  477 (559)
                      ..+...++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++...   + +...+..+++|++
T Consensus       153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~  232 (299)
T 3shr_A          153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW  232 (299)
T ss_dssp             HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred             HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence            34567889999999999999999999999999999999999999999999999999997652   2 3356789999999


Q ss_pred             eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      |||.++.   ...       ++.++++|.++|+++.|++++|.++++++|++..
T Consensus       233 fGe~~ll---~~~-------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~  276 (299)
T 3shr_A          233 FGEKALQ---GED-------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSN  276 (299)
T ss_dssp             ECGGGGS---SSE-------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCH
T ss_pred             eChHHHh---CCC-------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHH
Confidence            9999773   322       2889999999999999999999999999999953

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.53  E-value=8.1e-14  Score=134.34  Aligned_cols=113  Identities=15%  Similarity=0.222  Sum_probs=99.1

Q ss_pred             cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehhhhhh
Q 008614          409 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEEIIDW  485 (559)
Q Consensus       409 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~~l~~  485 (559)
                      .++|+|++++++.++.++..++.+.|.||++|+++||.++.+|||.+|.|++..   +++...+..+++|++|||.+++ 
T Consensus        13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~-   91 (232)
T 2gau_A           13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF-   91 (232)
T ss_dssp             GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH-
T ss_pred             cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh-
Confidence            367899999999999999999999999999999999999999999999999763   3334457899999999999764 


Q ss_pred             hhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          486 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       486 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                       .+.+        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        92 -~~~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  128 (232)
T 2gau_A           92 -AEET--------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCR  128 (232)
T ss_dssp             -HTSC--------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             -CCCC--------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHH
Confidence             2222        789999999999999999999999999999863

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.52  E-value=1.6e-13  Score=136.96  Aligned_cols=119  Identities=17%  Similarity=0.324  Sum_probs=104.4

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc--eEEEEEecCCCee
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK--LIGLKRQEDGNYC  478 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~--~~~~~~l~~G~~f  478 (559)
                      +...+++++++|+++++..+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++..  .+|  ...+..+++|++|
T Consensus       154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f  233 (291)
T 2qcs_B          154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF  233 (291)
T ss_dssp             HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred             HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence            345677889999999999999999999999999999999999999999999999999764  222  3467899999999


Q ss_pred             ehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       479 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ||.++.   ...       +|.+|++|.++|+++.|++++|.+++..+|++..
T Consensus       234 Ge~~ll---~~~-------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~  276 (291)
T 2qcs_B          234 GEIALL---MNR-------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILK  276 (291)
T ss_dssp             CSGGGT---CCC-------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred             cHHHHc---CCC-------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHH
Confidence            999773   322       1889999999999999999999999999999854

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.51  E-value=4.5e-14  Score=135.50  Aligned_cols=118  Identities=17%  Similarity=0.222  Sum_probs=103.0

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE  481 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~  481 (559)
                      .+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++.  .+| ...+..+++|++|||.
T Consensus         8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   87 (227)
T 3dkw_A            8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   87 (227)
T ss_dssp             HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence            4678999999999999999999999999999999999999999999999999999654  333 3456799999999998


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +++   ...      |.+.++++|.++|+++.+++++|.++++++|++..
T Consensus        88 ~~~---~~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  128 (227)
T 3dkw_A           88 MMF---MDT------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL  128 (227)
T ss_dssp             TTT---TTC------SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHH
T ss_pred             Hhc---CCC------CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence            763   222      22678899999999999999999999999999864

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.50  E-value=1.3e-13  Score=137.59  Aligned_cols=119  Identities=16%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             HHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008614          401 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE  480 (559)
Q Consensus       401 ~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe  480 (559)
                      .+...+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|++..+ |. .+..+++|++|||
T Consensus        34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-g~-~~~~l~~G~~fGe  111 (291)
T 2qcs_B           34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-NE-WATSVGEGGSFGE  111 (291)
T ss_dssp             HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEET-TE-EEEEECTTCEECG
T ss_pred             HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEEC-Ce-EEEEcCCCCccch
Confidence            344567899999999999999999999999999999999999999999999999999998774 43 5789999999999


Q ss_pred             hhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          481 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       481 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .++.   ...       ++.++++|.++|+++.|++++|.+++..+|.+..
T Consensus       112 ~~l~---~~~-------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~  152 (291)
T 2qcs_B          112 LALI---YGT-------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR  152 (291)
T ss_dssp             GGGT---CCC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHh---cCC-------CCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHH
Confidence            8773   222       2889999999999999999999999999998854

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.50  E-value=1.3e-13  Score=145.01  Aligned_cols=122  Identities=13%  Similarity=0.137  Sum_probs=107.3

Q ss_pred             HHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCCCe
Q 008614          400 KLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDGNY  477 (559)
Q Consensus       400 ~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~-~~~~~~l~~G~~  477 (559)
                      ..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. .+| ...+..+.+|++
T Consensus       139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~  218 (416)
T 3tnp_B          139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGS  218 (416)
T ss_dssp             HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCE
T ss_pred             HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCE
Confidence            345557889999999999999999999999999999999999999999999999999999764 333 445789999999


Q ss_pred             eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      |||.++.  .+.+        |.+|++|.++|+++.|++++|.+++.++|..+.
T Consensus       219 fGe~all--~~~p--------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~  262 (416)
T 3tnp_B          219 FGELALM--YNTP--------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR  262 (416)
T ss_dssp             ECGGGGT--SCCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred             EeeHHHh--cCCC--------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence            9999874  2222        899999999999999999999999999998753

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.47  E-value=3.1e-13  Score=144.50  Aligned_cols=129  Identities=17%  Similarity=0.209  Sum_probs=114.9

Q ss_pred             CCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc---
Q 008614          391 LPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK---  465 (559)
Q Consensus       391 Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~---  465 (559)
                      .|+..|.+-..+...+.++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|+++.  .+|   
T Consensus        27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~  106 (469)
T 1o7f_A           27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD  106 (469)
T ss_dssp             SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred             CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence            567778777777888999999999999999999999999999999999999999999999999999999765  333   


Q ss_pred             eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          466 LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       466 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      ...+..+++|++|||.+ .  .+.+        +.++++|.++|+++.|++++|.++++++|++.
T Consensus       107 ~~~~~~~~~G~~fGe~~-l--~~~~--------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~  160 (469)
T 1o7f_A          107 AVTICTLGIGTAFGESI-L--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYM  160 (469)
T ss_dssp             CEEEEEECTTCEECGGG-G--GTCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred             ceEEEEccCCCCcchhh-h--CCCC--------ccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence            25688999999999987 4  2333        88999999999999999999999999999865

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.47  E-value=1.1e-12  Score=124.13  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             cCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhc
Q 008614          412 QKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAEN  488 (559)
Q Consensus       412 ~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~  488 (559)
                      ++++.++++.++.++..++.+.|.+|+.|+++|+.++.+|||.+|.|+++.  .+| ...+..+++|++|||..++  .+
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~--~~   79 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EE   79 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTT--ST
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHh--cC
Confidence            456778999999999999999999999999999999999999999999754  333 4567799999999998663  12


Q ss_pred             cCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          489 QSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       489 ~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .       +++.++++|.++|+++.+++++|.++++++|++..
T Consensus        80 ~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  115 (210)
T 3ryp_A           80 G-------QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM  115 (210)
T ss_dssp             T-------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred             C-------CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHH
Confidence            2       12788999999999999999999999999999864

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=142.76  Aligned_cols=119  Identities=14%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             HHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008614          401 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE  480 (559)
Q Consensus       401 ~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe  480 (559)
                      .+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++.++.  .+..+++|++|||
T Consensus       125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~--~v~~l~~G~~fGe  202 (381)
T 4din_B          125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE--WVTNISEGGSFGE  202 (381)
T ss_dssp             HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTE--EEEEEESSCCBCG
T ss_pred             HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCe--EeeeCCCCCEEEc
Confidence            34456789999999999999999999999999999999999999999999999999999887443  5788999999999


Q ss_pred             hhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          481 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       481 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .+++  .+.+        |.+|++|.++|+++.|++++|.+++.++|..+.
T Consensus       203 ~all--~~~~--------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~  243 (381)
T 4din_B          203 LALI--YGTP--------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKR  243 (381)
T ss_dssp             GGGT--SCCB--------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             hHHh--cCCC--------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHH
Confidence            9774  2222        889999999999999999999999999998854

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.46  E-value=6.7e-13  Score=117.63  Aligned_cols=53  Identities=13%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE  337 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~  337 (559)
                      .|..|+||+++|+|||||||++|.|..+++++++.+++|+.++++++|.+++.
T Consensus        40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~   92 (139)
T 3eff_K           40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW   92 (139)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999943

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.45  E-value=1.3e-12  Score=123.45  Aligned_cols=109  Identities=16%  Similarity=0.226  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehhhhhhhhccCCCC
Q 008614          417 WEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEEIIDWAENQSSSH  493 (559)
Q Consensus       417 ~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~  493 (559)
                      ++++.++.++..++.+.|.||++|+++||.++.+|||.+|.|+++.  . ++...+..+++|++|||..++  .+.    
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~--~~~----   74 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLF--EKE----   74 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTC--C------
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHh--cCC----
Confidence            5788999999999999999999999999999999999999999764  3 344567899999999998663  121    


Q ss_pred             CCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          494 GHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       494 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ...+++.++++|.++|+++.+++++|.++++++|++..
T Consensus        75 ~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  112 (207)
T 2oz6_A           75 GSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILY  112 (207)
T ss_dssp             ---CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             CCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHH
Confidence            00002788999999999999999999999999999853

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.45  E-value=2.2e-13  Score=130.18  Aligned_cols=109  Identities=12%  Similarity=0.129  Sum_probs=98.6

Q ss_pred             HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cC-ceEEEEEecCCCeeehhhh
Q 008614          406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KS-KLIGLKRQEDGNYCGEEII  483 (559)
Q Consensus       406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~-~~~~~~~l~~G~~fGe~~l  483 (559)
                      .+++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+ +...+..+++|++|||   
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~---   80 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT---   80 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence            467899999999999999999999999999999999999999999999999999743 33 3455789999999998   


Q ss_pred             hhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       484 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                            +        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        81 ------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  114 (220)
T 2fmy_A           81 ------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSL  114 (220)
T ss_dssp             ------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred             ------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence                  2        678999999999999999999999999999854

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=141.36  Aligned_cols=120  Identities=17%  Similarity=0.308  Sum_probs=105.3

Q ss_pred             HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---Cc-eEEEEEecCCCe
Q 008614          402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---SK-LIGLKRQEDGNY  477 (559)
Q Consensus       402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---~~-~~~~~~l~~G~~  477 (559)
                      .++..+++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..   ++ ...+..+++|++
T Consensus       244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~  323 (381)
T 4din_B          244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY  323 (381)
T ss_dssp             HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred             HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence            34556788899999999999999999999999999999999999999999999999998752   22 335789999999


Q ss_pred             eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      |||.+++   ...       +|.++++|.++|+++.|++++|.+++..+|++.+
T Consensus       324 fGe~all---~~~-------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~  367 (381)
T 4din_B          324 FGEIALL---LNR-------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILK  367 (381)
T ss_dssp             ECTTGGG---SCC-------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred             echHHHh---CCC-------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence            9999874   322       2889999999999999999999999999999854

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.42  E-value=8.3e-13  Score=141.15  Aligned_cols=117  Identities=13%  Similarity=0.134  Sum_probs=102.6

Q ss_pred             hHHHhcCCcCCCCCCHHHHHHHHhcCeeE-EeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhh
Q 008614          404 GRNLLGQMQKFENWEDYSLDHLCGCLKPV-FFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       404 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~-~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~  482 (559)
                      ..+.++++++|.+++++.++.++..++.. .|.+|++|+++||.++.+|||.+|.|+++..++. .+..+++|++|||.+
T Consensus       335 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~-~~~~l~~G~~fGe~~  413 (469)
T 1o7f_A          335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKLA  413 (469)
T ss_dssp             HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGGG
T ss_pred             HHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe-eEEEecCCCEEEEeh
Confidence            35678999999999999999999999854 8999999999999999999999999998775443 578999999999997


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcc-eEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHT-NVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +.   ...       ++.+|++|.+ +|+++.|++++|.+++.++|++..
T Consensus       414 ll---~~~-------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~  453 (469)
T 1o7f_A          414 LV---NDA-------PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV  453 (469)
T ss_dssp             GT---CCS-------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred             hh---cCC-------CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence            73   322       2899999998 799999999999999999999854

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.41  E-value=5.1e-13  Score=140.58  Aligned_cols=119  Identities=13%  Similarity=0.209  Sum_probs=103.7

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---------CceEEEEEec
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---------SKLIGLKRQE  473 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---------~~~~~~~~l~  473 (559)
                      ++..+++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..         +....+..++
T Consensus       264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~  343 (416)
T 3tnp_B          264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF  343 (416)
T ss_dssp             SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred             HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence            3456788899999999999999999999999999999999999999999999999997642         2234578999


Q ss_pred             CCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          474 DGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       474 ~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +|++|||.+++   ...       +|.++|+|.++|+++.|++++|.+++..+|++..
T Consensus       344 ~G~~fGE~all---~~~-------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~  391 (416)
T 3tnp_B          344 RGQYFGELALV---TNK-------PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK  391 (416)
T ss_dssp             TTCEESGGGGT---CCS-------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred             CCCEecHHHHh---CCC-------CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence            99999999874   322       2899999999999999999999999999999854

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.41  E-value=6.8e-13  Score=127.03  Aligned_cols=108  Identities=8%  Similarity=0.071  Sum_probs=96.5

Q ss_pred             HhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCCCeeehhhhh
Q 008614          407 LLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       407 ~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~-~~~~~~l~~G~~fGe~~l~  484 (559)
                      +++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. .+| ...+..+++|++||     
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence            36789999999999999999999999999999999999999999999999999743 344 44577999999999     


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                          .+        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        76 ----~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  110 (222)
T 1ft9_A           76 ----MH--------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAW  110 (222)
T ss_dssp             ----SC--------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHH
T ss_pred             ----CC--------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHH
Confidence                12        788999999999999999999999999999854

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.41  E-value=4.3e-12  Score=124.72  Aligned_cols=108  Identities=16%  Similarity=0.245  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCC
Q 008614          415 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSS  491 (559)
Q Consensus       415 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~  491 (559)
                      ..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.  .+ +...+..+++|++|||..++  .+.  
T Consensus        55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~--~~~--  130 (260)
T 3kcc_A           55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EEG--  130 (260)
T ss_dssp             ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTT--STT--
T ss_pred             CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHh--CCC--
Confidence            458999999999999999999999999999999999999999999764  33 34467899999999998763  122  


Q ss_pred             CCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          492 SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       492 ~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                           +++.++++|.++|+++.+++++|.++++++|++..
T Consensus       131 -----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~  165 (260)
T 3kcc_A          131 -----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM  165 (260)
T ss_dssp             -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred             -----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHH
Confidence                 12789999999999999999999999999999864

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.39  E-value=1.9e-12  Score=151.10  Aligned_cols=117  Identities=18%  Similarity=0.242  Sum_probs=103.0

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-----cCceEEEEEecCCCe
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-----KSKLIGLKRQEDGNY  477 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-----~~~~~~~~~l~~G~~  477 (559)
                      +-.+.|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++++|+|.+|.|.|..     .++...+..+++|+.
T Consensus        39 ~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~s  118 (999)
T 4f7z_A           39 IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTA  118 (999)
T ss_dssp             HHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCE
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcc
Confidence            334678999999999999999999999999999999999999999999999999999864     223446889999999


Q ss_pred             eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      ||| ++.  -+.+        |++|++|.++|++++|++++|..+..+||+..
T Consensus       119 FGE-all--~n~p--------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~  160 (999)
T 4f7z_A          119 FGE-SIL--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYM  160 (999)
T ss_dssp             ECG-GGG--GTCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             hhh-hhc--cCCC--------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence            999 553  2332        99999999999999999999999999999854

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.38  E-value=3.8e-12  Score=121.11  Aligned_cols=111  Identities=14%  Similarity=0.225  Sum_probs=89.3

Q ss_pred             CcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhh
Q 008614          411 MQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAE  487 (559)
Q Consensus       411 v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l  487 (559)
                      -|.|...++.....+...++.+.|.+|++|+++|+.++.+|||.+|.|+++.  .+| ...+..+++|++|||..++  .
T Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~--~   81 (213)
T 1o5l_A            4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIF--S   81 (213)
T ss_dssp             ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTT--S
T ss_pred             cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHh--c
Confidence            3677778888999999999999999999999999999999999999999654  334 4557799999999998763  1


Q ss_pred             ccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          488 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       488 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      +.       +++.++++|.++|+++.+++++|.++++++|++.
T Consensus        82 ~~-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~  117 (213)
T 1o5l_A           82 SE-------PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELL  117 (213)
T ss_dssp             SS-------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred             CC-------CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHH
Confidence            22       1278899999999999999999999999999985

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.36  E-value=2.7e-12  Score=142.93  Aligned_cols=133  Identities=12%  Similarity=0.157  Sum_probs=111.1

Q ss_pred             HHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCe-eEEeCCCCEEEccCCccceEEEEEEeEEEEEEcC
Q 008614          386 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLK-PVFFSERTTIISEGESIHEMLFVLEGQISIYSKS  464 (559)
Q Consensus       386 ~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~  464 (559)
                      .++...| ..|.+-......+.++++++|++++++.++.++..++ .+.|.+|++|+++||.++.+|||.+|.|+++..+
T Consensus        13 ~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g   91 (694)
T 3cf6_E           13 MILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG   91 (694)
T ss_dssp             HHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred             HHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence            4444333 3344434444567899999999999999999999998 7899999999999999999999999999987754


Q ss_pred             ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcc-eEEEEEEeHHHHHHHHHhcHhhh
Q 008614          465 KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT-NVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       465 ~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      + ..+..+++|++|||.+++  .+.+        +.++++|.+ +|+++.|++++|.++++++|+++
T Consensus        92 ~-~il~~l~~Gd~fGe~al~--~~~~--------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~  147 (694)
T 3cf6_E           92 K-GVVCTLHEGDDFGKLALV--NDAP--------RAASIVLREDNCHFLRVDKEDFNRILRDVEANT  147 (694)
T ss_dssp             T-EEEEEEETTCEECHHHHH--HTCB--------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred             C-EEEEEeCCCCEeehHHHh--CCCC--------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence            4 467899999999998764  2322        789999999 59999999999999999999984

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.33  E-value=5.9e-12  Score=122.82  Aligned_cols=112  Identities=14%  Similarity=0.119  Sum_probs=95.8

Q ss_pred             HhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhh
Q 008614          407 LLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEII  483 (559)
Q Consensus       407 ~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l  483 (559)
                      ++.+...+..++++.++.+...++.+.|.+|++|+++|+.++.+|||.+|.|++..  .+ +...+..+++|++||| .+
T Consensus        10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l   88 (250)
T 3e6c_C           10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LY   88 (250)
T ss_dssp             CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CS
T ss_pred             hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ec
Confidence            34444445889999999999999999999999999999999999999999999754  33 3446779999999999 44


Q ss_pred             hhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       484 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                          .+.        +.++++|.++|+++.+++++|.++++++|++..
T Consensus        89 ----~~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  124 (250)
T 3e6c_C           89 ----PTG--------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIF  124 (250)
T ss_dssp             ----CCS--------CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHH
T ss_pred             ----CCC--------CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHH
Confidence                221        678999999999999999999999999999853

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.32  E-value=1.2e-11  Score=105.28  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      |..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++...
T Consensus        50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~  103 (114)
T 2q67_A           50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ  103 (114)
T ss_dssp             HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667999999999999999999999999999999999999999999999986654

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.28  E-value=1.1e-12  Score=109.73  Aligned_cols=55  Identities=9%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      .|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.+|.+++...
T Consensus        40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~   94 (103)
T 2k1e_A           40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV   94 (103)
T ss_dssp             CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred             cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667999999999999999999999999999999999999999999999996544

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.27  E-value=3.5e-11  Score=140.40  Aligned_cols=115  Identities=12%  Similarity=0.120  Sum_probs=99.3

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEE-eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVF-FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~-~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~  481 (559)
                      ...+.+.++|.|++++...++.|+..+.... +..|++|+++||.++.+|||.+|.|+|+..+.. .+..+++|++|||.
T Consensus       334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~-~v~~L~~Gd~FGEl  412 (999)
T 4f7z_A          334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKL  412 (999)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGG
T ss_pred             HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc-ceEEecCCCcccch
Confidence            3457789999999999999999999999766 467999999999999999999999998864433 57899999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcce-EEEEEEeHHHHHHHHHhcHh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRR  528 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~  528 (559)
                      ++.   ...       +|.+|++|.++ |++++++++||.+++.+-.+
T Consensus       413 ALL---~~~-------PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~  450 (999)
T 4f7z_A          413 ALV---NDA-------PRAASIVLREDNCHFLRVDKEDGNRILRDVEA  450 (999)
T ss_dssp             GGT---CSC-------BCSSEEEESSSSEEEEEEEHHHHHHHHHHHHH
T ss_pred             hhc---cCC-------CeeEEEEEecCceEEEEeeHHHHHHHHhHHHH
Confidence            884   333       29999999985 99999999999999976543

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.26  E-value=7e-11  Score=114.73  Aligned_cols=105  Identities=12%  Similarity=0.174  Sum_probs=88.7

Q ss_pred             HHHHHHHHhcCe---eEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCC
Q 008614          419 DYSLDHLCGCLK---PVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSS  492 (559)
Q Consensus       419 ~~~l~~l~~~l~---~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~  492 (559)
                      ++.++.|.....   .+.|.+|++|+++|+.++.+|||.+|.|+++.  .+ +...+..+++|++||+.+++   .+. +
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~---~~~-~  105 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLL---TGN-K  105 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHH---SSC-C
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHh---CCC-C
Confidence            678888888888   99999999999999999999999999999754  33 34567899999999998764   322 0


Q ss_pred             CCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          493 HGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       493 ~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                          ..+..+++|.++|+++.+++++|.++++++|++..
T Consensus       106 ----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~  140 (243)
T 3la7_A          106 ----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSM  140 (243)
T ss_dssp             ----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred             ----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHH
Confidence                01457899999999999999999999999999864

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.23  E-value=8.3e-11  Score=96.99  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      |..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++..+
T Consensus        33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~   86 (97)
T 3ouf_A           33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ   86 (97)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677999999999999999999999999999999999999999999999986543

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.22  E-value=1.2e-10  Score=112.70  Aligned_cols=107  Identities=13%  Similarity=0.195  Sum_probs=85.6

Q ss_pred             CCCHHHHHHHHh--cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccC
Q 008614          416 NWEDYSLDHLCG--CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQS  490 (559)
Q Consensus       416 ~~~~~~l~~l~~--~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~  490 (559)
                      +++++.++.+..  ..+.+.|.+|++|+++||.++.+|||.+|.|+++.  .+| ...+..+ +|++|||..++   ...
T Consensus         3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~---~~~   78 (238)
T 2bgc_A            3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFI---DTE   78 (238)
T ss_dssp             -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCT---TTC
T ss_pred             CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhh---cCC
Confidence            578888888884  59999999999999999999999999999999754  344 4445677 99999998663   221


Q ss_pred             CCCCCCCCcccEEEEc-ceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          491 SSHGHLPISTRTIIAH-TNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       491 ~~~~~~~~r~~tv~A~-~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                           .+++..++.|. ++|+++.+++++|.++++++|++..
T Consensus        79 -----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~  115 (238)
T 2bgc_A           79 -----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFF  115 (238)
T ss_dssp             -----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             -----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHH
Confidence                 00014667777 5999999999999999999999853

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.13  E-value=1e-10  Score=93.28  Aligned_cols=52  Identities=13%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE  337 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~  337 (559)
                      |..|+||+++|+||+||||++|.|..+++++++.+++|..++++.++.+++.
T Consensus        29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~   80 (82)
T 3ldc_A           29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF   80 (82)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6679999999999999999999999999999999999999999999998754

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.05  E-value=5.1e-10  Score=111.49  Aligned_cols=55  Identities=7%  Similarity=-0.110  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHhHhhcccccC-CCC-cCChhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          283 PKKLLRCLHWGLQKLSAFGQD-LET-SDDVGE----NIFAIWMTIYGVVLFVFLIGRMQSE  337 (559)
Q Consensus       283 ~~~Yl~slYwa~~T~tTvGyG-di~-p~t~~E----~~~~i~~mi~G~~~fa~iig~i~s~  337 (559)
                      +..+..|+||+++|+||+||| |+. |.+..-    ..+..++++.|.++.+..+|.+.+.
T Consensus       178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~  238 (285)
T 3rvy_A          178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDA  238 (285)
T ss_dssp             HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677999999999999999 986 765543    7888999999999999999998854

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.03  E-value=4.5e-11  Score=109.02  Aligned_cols=52  Identities=13%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS  336 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s  336 (559)
                      .|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++
T Consensus        67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~  118 (166)
T 3pjs_K           67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT  118 (166)
T ss_dssp             STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred             CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666999999999999999999999999999999999999999999999984

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.01  E-value=2.1e-09  Score=100.42  Aligned_cols=78  Identities=23%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             EEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614          432 VFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN  508 (559)
Q Consensus       432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~  508 (559)
                      +.|.+|++|+++||.++.+|+|.+|.|+++.  .+ +...+..+++|++||| +++   ...       ++.++++|.++
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~---~~~-------~~~~~~~A~~~   70 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EAL---EGK-------AYRYTAEAMTE   70 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGG---TCS-------BCSSEEEESSS
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhh---CCC-------CceeEEEECCc
Confidence            5799999999999999999999999999754  33 3456789999999999 874   322       17899999999


Q ss_pred             EEEEEEeHHHHH
Q 008614          509 VEGFTLKTDELK  520 (559)
Q Consensus       509 ~~l~~L~~~~f~  520 (559)
                      |+++.+++++|.
T Consensus        71 ~~v~~i~~~~~~   82 (195)
T 3b02_A           71 AVVQGLEPRAMD   82 (195)
T ss_dssp             EEEEEECGGGCC
T ss_pred             EEEEEEcHHHcC
Confidence            999999999998

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=98.93  E-value=1.9e-09  Score=107.38  Aligned_cols=54  Identities=7%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSET  338 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~  338 (559)
                      .|..|+|||++|+|||||||++|.+...++++++.+++|.+++|+.+|.+.+..
T Consensus        82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~  135 (301)
T 1xl4_A           82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF  135 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999999999999999877544

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=98.91  E-value=2e-09  Score=108.28  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      .|..|+||+++|+|||||||++|.|..+++++++.+++|.+++|+++|.+.+...
T Consensus        96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~  150 (333)
T 1p7b_A           96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA  150 (333)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999886544

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=98.89  E-value=4.9e-09  Score=103.99  Aligned_cols=77  Identities=12%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTF  363 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~~  363 (559)
                      .|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.+++...+.  ++.....+++.+.+++.++.
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~--~~~~i~~le~~~~~~~~~~~  191 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS--LRHGIGHIEAIFLKWHVPPE  191 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHHTTTC--CC
T ss_pred             ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHhccccchh
Confidence            589999999999999999999999999999999999999999999999999655432  22233344445555555443

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=98.84  E-value=1.1e-08  Score=95.98  Aligned_cols=84  Identities=20%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             HHhcCeeEEeCCCCEEEccCCcc--ceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCc
Q 008614          425 LCGCLKPVFFSERTTIISEGESI--HEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS  499 (559)
Q Consensus       425 l~~~l~~~~~~~ge~I~~~Gd~~--~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r  499 (559)
                      |...++.+.|.+|++|+++||.+  +.+|+|.+|.|+++.  .+ +...+..+++|++||+ .+.  .+.+        +
T Consensus         1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l--~~~~--------~   69 (202)
T 2zcw_A            1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EAL--FGQE--------R   69 (202)
T ss_dssp             -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHH--HTCC--------B
T ss_pred             CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhc--CCCC--------c
Confidence            34667889999999999999999  999999999999754  33 4455779999999999 553  2332        7


Q ss_pred             ccEEEEcceEEEEEEeHHHHH
Q 008614          500 TRTIIAHTNVEGFTLKTDELK  520 (559)
Q Consensus       500 ~~tv~A~~~~~l~~L~~~~f~  520 (559)
                      .++++|.++|+++.+ +++|.
T Consensus        70 ~~~~~A~~~~~v~~i-~~~~~   89 (202)
T 2zcw_A           70 IYFAEAATDVRLEPL-PENPD   89 (202)
T ss_dssp             CSEEEESSCEEEEEC-CSSCC
T ss_pred             ceEEEEcccEEEEEE-hHhcC
Confidence            889999999999999 98886

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.71  E-value=1.5e-08  Score=101.51  Aligned_cols=55  Identities=11%  Similarity=0.107  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      .|..|+|||++|||||||||+.|.+...++++++.+++|.+++|+++|.+.+..+
T Consensus        78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~  132 (321)
T 2qks_A           78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS  132 (321)
T ss_dssp             THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999999999999999999999999986554

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=98.57  E-value=1.9e-07  Score=101.89  Aligned_cols=48  Identities=17%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGR  333 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~  333 (559)
                      |..|+||+++|+|||||||++|.|..+++++++++++|..++++.++.
T Consensus        52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~   99 (565)
T 4gx0_A           52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF   99 (565)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999988

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.56  E-value=7.6e-08  Score=93.98  Aligned_cols=52  Identities=15%  Similarity=0.267  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS  336 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s  336 (559)
                      .|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.++.
T Consensus        93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~  144 (280)
T 3ukm_A           93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ  144 (280)
T ss_dssp             SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999999999999999999999999999999999999999999874

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.55  E-value=3.2e-07  Score=92.01  Aligned_cols=54  Identities=11%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             HHHHHHHHhHhhcccccCCCCcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSD--DVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~--t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      +..++|||+.|+|||||||+.|.  +..-++++.+.+++|.++.|+.+|.+.+-.+
T Consensus        92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~s  147 (340)
T 3sya_A           92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKIS  147 (340)
T ss_dssp             TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45699999999999999999996  6789999999999999999999998875544

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.43  E-value=2.2e-07  Score=90.68  Aligned_cols=52  Identities=12%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVG-------ENIFAIWMTIYGVVLFVFLIGRMQSE  337 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~-------E~~~~i~~mi~G~~~fa~iig~i~s~  337 (559)
                      |+.|+||++.|+|||||||++|.+..       -++++++.+++|..+++++++.+++.
T Consensus       202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~  260 (280)
T 3ukm_A          202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCEL  260 (280)
T ss_dssp             HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67799999999999999999999885       49999999999999999999999853

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=98.39  E-value=2.1e-07  Score=92.28  Aligned_cols=53  Identities=9%  Similarity=0.138  Sum_probs=48.8

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGEN------IFAIWMTIYGVVLFVFLIGRMQSET  338 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~------~~~i~~mi~G~~~fa~iig~i~s~~  338 (559)
                      |+.|+||+++|+|||||||++|.+..++      +++++.+++|..+++++++.+++..
T Consensus       225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~  283 (309)
T 3um7_A          225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL  283 (309)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999998886      5999999999999999999988653

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.37  E-value=1.7e-06  Score=86.92  Aligned_cols=55  Identities=11%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhHhhcccccCCCCc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETS--DDVGENIFAIWMTIYGVVLFVFLIGRMQSETT  339 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p--~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~  339 (559)
                      .+..++|||+.|+|||||||+.|  .+..-++++.+.+++|.++.|..+|-+.+-.+
T Consensus        94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s  150 (343)
T 3spc_A           94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA  150 (343)
T ss_dssp             SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46779999999999999999986  48899999999999999999999998765443

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.24  E-value=1e-07  Score=97.02  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             HHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          288 RCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE  337 (559)
Q Consensus       288 ~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~  337 (559)
                      .|+||+++|+||+||||++|.|..+++++++.+++|..+++++++.+++.
T Consensus        48 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~   97 (336)
T 1lnq_A           48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF   97 (336)
T ss_dssp             TTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred             HHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999843

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=97.81  E-value=0.00019  Score=68.52  Aligned_cols=24  Identities=8%  Similarity=0.049  Sum_probs=20.2

Q ss_pred             eehhhhHHHHHHHHHHHHHHHhhh
Q 008614           65 ITATVIRSILDFLKLLHISSELRE   88 (559)
Q Consensus        65 ~~~~~~~~~~d~~f~~Di~l~f~t   88 (559)
                      ..+..+|.++-++|.+|+++++-.
T Consensus        42 ~~l~~~e~~~~~iF~~E~~lri~~   65 (229)
T 4dxw_A           42 ETIHLLDYGITIFFVIEILIRFIG   65 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999874

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=95.51  E-value=0.0086  Score=51.63  Aligned_cols=46  Identities=11%  Similarity=0.085  Sum_probs=34.7

Q ss_pred             eehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhccccc
Q 008614           65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIP  139 (559)
Q Consensus        65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~  139 (559)
                      ..+..+|.++-++|.+|.++++-.+--                            |++=.+ |=++|+++++|+.
T Consensus        37 ~~l~~~d~~~~~iFt~E~~lRl~~~~~----------------------------~~~y~~-~niiDllailp~~   82 (132)
T 1ors_C           37 VRLYLVDLILVIILWADYAYRAYKSGD----------------------------PAGYVK-KTLYEIPALVPAG   82 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTS----------------------------TTTTTT-TCGGGTGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------HHHHHH-HHHHHHHHHHHHH
Confidence            346789999999999999999986421                            111114 7789999999975

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=94.81  E-value=0.025  Score=49.67  Aligned_cols=24  Identities=8%  Similarity=0.040  Sum_probs=21.4

Q ss_pred             ehhhhHHHHHHHHHHHHHHHhhhc
Q 008614           66 TATVIRSILDFLKLLHISSELREA   89 (559)
Q Consensus        66 ~~~~~~~~~d~~f~~Di~l~f~t~   89 (559)
                      .+..+|.++-++|.+|.++++..+
T Consensus        53 ~~~~id~~~~~iF~~Ey~lRl~~a   76 (147)
T 2kyh_A           53 RLYLVDLILVIILWADYAYRAYKS   76 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Confidence            467899999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	559
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.98
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.81
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.76
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.75
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.75
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.75
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.74
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.74
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.73
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.69
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.59
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.56
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.54
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.51
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.48
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.47
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.44
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.34
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.33
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.27
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	98.92
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	96.83
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	96.38
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	86.39
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	81.55

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=9.5e-32  Score=251.85  Aligned_cols=180  Identities=20%  Similarity=0.275  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCC
Q 008614          339 TRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWE  418 (559)
Q Consensus       339 ~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~  418 (559)
                      ++..+++++|+.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||++||.++..+++.++++++|+|++++
T Consensus         2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~   80 (193)
T d1q3ea_           2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence            3557899999999999999999999999999999999975 677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCC
Q 008614          419 DYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPI  498 (559)
Q Consensus       419 ~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~  498 (559)
                      ++++..|+..|++..|.|||+|+++||.++++|||.+|.|++..+++.  ...+++|++|||.++.  .+.+        
T Consensus        81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~--~~~l~~G~~fGe~~~~--~~~~--------  148 (193)
T d1q3ea_          81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK--EMKLSDGSYFGEICLL--TRGR--------  148 (193)
T ss_dssp             HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCC--EEEECTTCEECHHHHH--HCSB--------
T ss_pred             HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcc--eeeeccceeeeeeecc--CCCc--------
Confidence            999999999999999999999999999999999999999998876553  5689999999999774  2333        


Q ss_pred             cccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          499 STRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       499 r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ++++++|.++|+++.|++++|.+++++||++.+
T Consensus       149 ~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~  181 (193)
T d1q3ea_         149 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRR  181 (193)
T ss_dssp             CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHH
T ss_pred             ccccceecCceEEEEEeHHHHHHHHHHCHHHHH
Confidence            889999999999999999999999999999853

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=1.7e-20  Score=164.45  Aligned_cols=123  Identities=35%  Similarity=0.663  Sum_probs=107.3

Q ss_pred             HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcC----ceEEEEEecCCCeeehh
Q 008614          406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS----KLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~l~~G~~fGe~  481 (559)
                      ..|+++|+|++++++++++|+..++++.|.|||+|+++||.++++|||.+|.|++...+    +......+++|++|||.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            35899999999999999999999999999999999999999999999999999976521    22345789999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF  529 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~  529 (559)
                      ++.+..+.. ...+.+.|++||+|+++|+++.|+++||.+++++||+.
T Consensus        86 ~ll~~~~~~-~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~r~  132 (137)
T d1wgpa_          86 LLTWALDPK-SGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS  132 (137)
T ss_dssp             HHHHHHCSS-CCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred             hHhccCCCc-ccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhccc
Confidence            886555554 44566779999999999999999999999999999875

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.4e-18  Score=149.36  Aligned_cols=114  Identities=17%  Similarity=0.253  Sum_probs=103.6

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      .+.+++.++|++++++.+++++..++.+.|+|||+|+++||.++.+|||.+|.+++...+.  ....+++|++|||.++.
T Consensus        19 ~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~~~--~~~~l~~G~~fGe~~ll   96 (136)
T d1ne6a1          19 AKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE--WATSVGEGGSFGELALI   96 (136)
T ss_dssp             HHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTE--EEEEECTTCEECCHHHH
T ss_pred             HHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeecccc--ccceeccccccccHHHc
Confidence            5788999999999999999999999999999999999999999999999999999887554  46789999999999774


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                        .+.+        +++|++|.++|+++.|++++|.++++++|..+
T Consensus        97 --~~~~--------~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~  132 (136)
T d1ne6a1          97 --YGTP--------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRK  132 (136)
T ss_dssp             --HCCC--------CCSEEEESSCEEEEEEEHHHHHHHTHHHHHHH
T ss_pred             --CCCc--------ceEEEEEccCEEEEEEEHHHHHHHHhhCHHHH
Confidence              2433        89999999999999999999999999999764

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=9.4e-18  Score=146.51  Aligned_cols=117  Identities=14%  Similarity=0.169  Sum_probs=104.7

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI  482 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~  482 (559)
                      .+.|+++|+|++++++.+..++..++++.|.||++|+++||.++.+|||.+|.|+++.  +++...+..+++|++|||.+
T Consensus        15 ~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~fg~~~   94 (136)
T d1cx4a1          15 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELA   94 (136)
T ss_dssp             HHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEECHHH
T ss_pred             HHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCccccchHH
Confidence            4778999999999999999999999999999999999999999999999999999754  34444567899999999997


Q ss_pred             hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +.  .+.+        +.++++|.++|+++.|++++|.++++++|..++
T Consensus        95 l~--~~~~--------~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r  133 (136)
T d1cx4a1          95 LM--YNTP--------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR  133 (136)
T ss_dssp             HH--HCCC--------CCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             Hh--CCCc--------ceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHH
Confidence            74  3433        889999999999999999999999999998853

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.7e-17  Score=146.75  Aligned_cols=116  Identities=14%  Similarity=0.248  Sum_probs=103.1

Q ss_pred             HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---------cCceEEEEEecCCC
Q 008614          406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---------KSKLIGLKRQEDGN  476 (559)
Q Consensus       406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---------~~~~~~~~~l~~G~  476 (559)
                      .+|+++|+|++++++.+..++..++.+.|.||++|+++||.++++|+|.+|.|++..         .++...+..+++|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            578999999999999999999999999999999999999999999999999999753         23344578999999


Q ss_pred             eeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          477 YCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       477 ~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      +|||.++.  .+.+        +.+|++|.++|+++.|++++|.++++++|++..
T Consensus        82 ~fGe~~~~--~~~~--------~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~  126 (147)
T d1cx4a2          82 YFGELALV--TNKP--------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK  126 (147)
T ss_dssp             EESCHHHH--HTCC--------CSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHH
T ss_pred             Eeeehhhc--CCCC--------ceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHH
Confidence            99998774  2332        889999999999999999999999999998753

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1e-17  Score=145.51  Aligned_cols=116  Identities=18%  Similarity=0.346  Sum_probs=102.7

Q ss_pred             HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-e-EEEEEecCCCeeehh
Q 008614          406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-L-IGLKRQEDGNYCGEE  481 (559)
Q Consensus       406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~-~~~~~l~~G~~fGe~  481 (559)
                      ++|+++|+|++++++.+.+|+..++++.|.|||.|+++||.++++|+|.+|.|++..  .+| . ..+..+++|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            678999999999999999999999999999999999999999999999999999655  223 2 346789999999998


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      ++.  .+.+        ++++++|.++|+++.|++++|.++++++|++..
T Consensus        82 ~~~--~~~~--------~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~  121 (132)
T d1ne6a2          82 ALL--MNRP--------RAATVVARGPLKCVKLDRPRFERVLGPCSDILK  121 (132)
T ss_dssp             HHH--HTSS--------CSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHH
T ss_pred             eec--CCCc--------eeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHH
Confidence            774  2322        789999999999999999999999999999854

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.1e-17  Score=141.83  Aligned_cols=115  Identities=11%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEe-CCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008614          403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFF-SERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE  481 (559)
Q Consensus       403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~-~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~  481 (559)
                      ...+.|+++|+|++++++.+++|+..++.+.+ .+|+.|+++||.++++|+|.+|.|++...++. ....+++|++|||.
T Consensus         7 ~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~~~~-~~~~~~~G~~fGe~   85 (124)
T d1o7fa3           7 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKL   85 (124)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGG
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEeeee-ecccccCCcchhhh
Confidence            34678999999999999999999999998665 57999999999999999999999998775543 46789999999999


Q ss_pred             hhhhhhccCCCCCCCCCcccEEEEcce-EEEEEEeHHHHHHHHHhcHh
Q 008614          482 IIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRR  528 (559)
Q Consensus       482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~  528 (559)
                      ++.  .+.+        |.+|++|.++ |+++.|++++|.++++++|+
T Consensus        86 ~ll--~~~~--------r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          86 ALV--NDAP--------RAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             GGT--CCSC--------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             Hhh--CCCc--------eeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            774  2322        8899999995 99999999999999999985

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.8e-17  Score=148.16  Aligned_cols=134  Identities=16%  Similarity=0.229  Sum_probs=113.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---
Q 008614          386 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---  462 (559)
Q Consensus       386 ~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---  462 (559)
                      ++|++-|.. |.+...+...+.++++++|++++++.+++++..++.+.|+||+.|+++||.++.+|+|.+|.|++..   
T Consensus         5 ~~L~k~p~~-Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~   83 (155)
T d1o7fa2           5 ACLDKRPLE-RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET   83 (155)
T ss_dssp             HHHTSCSTT-CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSS
T ss_pred             HHhcCChhh-CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeecc
Confidence            345564443 6555666667889999999999999999999999999999999999999999999999999999753   


Q ss_pred             --cCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          463 --KSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       463 --~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                        +++...+..+++|++||| ++.  .+.+        |+++++|.++|+++.|++++|.++++++|++..
T Consensus        84 ~~~~~~~~v~~l~~g~~fGe-~~l--~~~~--------~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~~  143 (155)
T d1o7fa2          84 SSHQDAVTICTLGIGTAFGE-SIL--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYMA  143 (155)
T ss_dssp             SCGGGCEEEEEECTTCEECG-GGG--GTCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTT
T ss_pred             cccccccccccccccccchh-hhh--cCCC--------ceEEEEECCCEEEEEEeHHHHHHHHHHCHHHHH
Confidence              223445789999999998 442  2332        889999999999999999999999999999854

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.73  E-value=2.3e-17  Score=143.49  Aligned_cols=113  Identities=19%  Similarity=0.282  Sum_probs=102.5

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID  484 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~  484 (559)
                      .++|+++|+|++++++.++.++..++.+.|.||++|+++||.++.+|+|.+|.|++...++.    .+++|++|||.+++
T Consensus        10 ~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~~~~----~l~~G~~~G~~~~l   85 (133)
T d1vp6a_          10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV----ELGPGAFFGEMALI   85 (133)
T ss_dssp             HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSCE----EECTTCEECHHHHH
T ss_pred             HHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEeeee----eeccCccccccccc
Confidence            37899999999999999999999999999999999999999999999999999998776553    58999999998764


Q ss_pred             hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                        .+.+        +.++++|.++|+++.|++++|.++++++|++..
T Consensus        86 --~~~~--------~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~  122 (133)
T d1vp6a_          86 --SGEP--------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAE  122 (133)
T ss_dssp             --HCCC--------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             --CCCc--------ccceEEECCCEEEEEEeHHHHHHHHHhCHHHHH
Confidence              2322        788999999999999999999999999999853

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.69  E-value=3.9e-16  Score=137.92  Aligned_cols=118  Identities=17%  Similarity=0.185  Sum_probs=101.2

Q ss_pred             HHHhcCCcCCCCCCHHHHHHHHhcCe--eEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeee
Q 008614          405 RNLLGQMQKFENWEDYSLDHLCGCLK--PVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCG  479 (559)
Q Consensus       405 ~~~l~~v~~F~~~~~~~l~~l~~~l~--~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fG  479 (559)
                      .+.|.++|+|++++++.+++|+..++  .+.|.||++|+++||+++++|||.+|.|++..   +++...+..+++|++||
T Consensus         5 ~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~fG   84 (147)
T d1zyba2           5 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE   84 (147)
T ss_dssp             HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred             HHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEec
Confidence            46789999999999999999998765  56799999999999999999999999999655   33445678999999999


Q ss_pred             hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      |.++.   ...      +.+.++++|.++|+++.+++++|.++++++|++..
T Consensus        85 e~~~~---~~~------~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~  127 (147)
T d1zyba2          85 PQSLF---GMN------TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRL  127 (147)
T ss_dssp             GGGGS---SSC------CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHH
T ss_pred             cchhh---ccc------ccccceeeecceeeeeehhHHHHHHHHHHCHHHHH
Confidence            98763   221      22578999999999999999999999999999853

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.59  E-value=7.9e-15  Score=128.51  Aligned_cols=110  Identities=15%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             cCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhc
Q 008614          412 QKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAEN  488 (559)
Q Consensus       412 ~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~  488 (559)
                      .+|+.++++.++.+...++++.|.+|+.|+++|+.++.+|+|.+|.|+++.  .+| ...+..+++|++||+.+++  .+
T Consensus         7 elf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~--~~   84 (142)
T d2gaua2           7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF--AE   84 (142)
T ss_dssp             HHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH--HT
T ss_pred             HHHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhh--cc
Confidence            368999999999999999999999999999999999999999999999764  333 3346789999999999764  23


Q ss_pred             cCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          489 QSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       489 ~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                      .+        +..+++|.++|+++.|++++|.++++++|++..
T Consensus        85 ~~--------~~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~  119 (142)
T d2gaua2          85 ET--------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCR  119 (142)
T ss_dssp             SC--------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred             CC--------ceeEEEecCCEEEEEEeHHHHHHHHHHCHHHHH
Confidence            33        788999999999999999999999999999853

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.9e-14  Score=122.99  Aligned_cols=105  Identities=16%  Similarity=0.261  Sum_probs=90.2

Q ss_pred             CHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCC
Q 008614          418 EDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHG  494 (559)
Q Consensus       418 ~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~  494 (559)
                      +++.++.++...+.+.|.||++|+++||+++.+|||.+|.|+++.  .+ +...+..+.+|++||+..+.  .+.+    
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~--~~~~----   75 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EEGQ----   75 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTT--SSSC----
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHh--cCCc----
Confidence            467889999999999999999999999999999999999999654  33 44567799999999998663  1221    


Q ss_pred             CCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614          495 HLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  531 (559)
Q Consensus       495 ~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~  531 (559)
                         ++.++++|.++|+++.+++++|.++++++|++..
T Consensus        76 ---~~~~~~~a~~~~~v~~i~~~~~~~~~~~~~~~~~  109 (132)
T d1i5za2          76 ---ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM  109 (132)
T ss_dssp             ---BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred             ---cceEEEEEccceEEEEEcHHHHHHHHhhCHHHHH
Confidence               2789999999999999999999999999999853

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.54  E-value=1e-13  Score=119.95  Aligned_cols=105  Identities=15%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             HHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCC
Q 008614          420 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHL  496 (559)
Q Consensus       420 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~  496 (559)
                      +-++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.  .+ +...+..+++|++|||..+.   .+.   ...
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~---~~~---~~~   76 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLF---EKE---GSE   76 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTC---C--------
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHh---cCc---ccc
Confidence            4678899999999999999999999999999999999999754  33 34567799999999998663   321   111


Q ss_pred             CCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          497 PISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       497 ~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      .+++++++|.++|+++.+++++|.++++++|++.
T Consensus        77 ~~~~~~~~a~~~~~vl~i~~~~~~~~~~~~~~~~  110 (134)
T d2oz6a2          77 QERSAWVRAKVECEVAEISYAKFRELSQQDSEIL  110 (134)
T ss_dssp             CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred             ccceeEEEECCCEEEEEEeHHHHHHHHHHCHHHH
Confidence            2378899999999999999999999999999985

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.51  E-value=2.5e-14  Score=123.68  Aligned_cols=104  Identities=9%  Similarity=0.097  Sum_probs=93.2

Q ss_pred             CCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhhhhhhh
Q 008614          410 QMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEIIDWAE  487 (559)
Q Consensus       410 ~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~l~~~l  487 (559)
                      +.++|+.++++..+.+...++.+.|.+||+|+++|+.++++|+|.+|.++++.  +++...+..+++|++||+.      
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~------   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH------   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC------
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc------
Confidence            46788888999999999999999999999999999999999999999999543  5445567899999999972      


Q ss_pred             ccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          488 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       488 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                                 +.++++|.++|+++.+++++|.++++++|++.
T Consensus        77 -----------~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~  108 (132)
T d1ft9a2          77 -----------SGCLVEATERTEVRFADIRTFEQKLQTCPSMA  108 (132)
T ss_dssp             -----------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGH
T ss_pred             -----------ccccceeccceeeeeehHHHHHHHHHHHHHHH
Confidence                       46789999999999999999999999999985

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.48  E-value=1.4e-13  Score=120.03  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             CcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhh
Q 008614          411 MQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAE  487 (559)
Q Consensus       411 v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l  487 (559)
                      +.-+.-+|.+.+++++...+.+.|++|++|+++||.++.+|||.+|.|+++.  .+ +...+..+++|++|||....   
T Consensus         6 ~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~~~---   82 (139)
T d3e5ua2           6 IIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPT---   82 (139)
T ss_dssp             SSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCSCC---
T ss_pred             cCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhhhh---
Confidence            3346667778889999999999999999999999999999999999999654  33 44556799999999985431   


Q ss_pred             ccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHHHHHhHHH
Q 008614          488 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRF  542 (559)
Q Consensus       488 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~~~~~~r~  542 (559)
                        +        +..+++|.++|+++.+++++|.++++++|++.. ..+.+...|+
T Consensus        83 --~--------~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~-~il~~~~~r~  126 (139)
T d3e5ua2          83 --G--------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIF-EIFKNYLTKV  126 (139)
T ss_dssp             --S--------CEEEEEESSCEEEEEECHHHHHHHHHHCTHHHH-HHHHHHHHHH
T ss_pred             --c--------ccccccccccceEEEeeHHHHHHHHhcCHHHHH-HHHHHHHHHH
Confidence              1        678999999999999999999999999999953 3444333333

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=3.4e-13  Score=115.59  Aligned_cols=100  Identities=16%  Similarity=0.270  Sum_probs=85.2

Q ss_pred             HHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCC
Q 008614          422 LDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPI  498 (559)
Q Consensus       422 l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~  498 (559)
                      +++|+...+.+.|.+|++|+++||+++.+|||.+|.++++.  .+ ....+..+++|++||+..++  .+.       |.
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~--~~~-------~~   73 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIF--SSE-------PR   73 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTT--SSS-------CB
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHh--ccC-------CC
Confidence            45678889999999999999999999999999999999654  33 44556799999999998763  122       22


Q ss_pred             cccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614          499 STRTIIAHTNVEGFTLKTDELKHGIALHRRFN  530 (559)
Q Consensus       499 r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~  530 (559)
                      +.++++|.++|+++.|++++|.++++++|++.
T Consensus        74 ~~~~~~a~~~~~vl~i~~~~~~~~~~~~~~~~  105 (129)
T d1o5la1          74 FPVNVVAGENSKILSIPKEVFLDLLMKDRELL  105 (129)
T ss_dssp             CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred             ccEEEEeecccEEEEEcHHHHHHHHHhCHHHH
Confidence            56899999999999999999999999999985

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.44  E-value=3.3e-13  Score=110.85  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTR  340 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~  340 (559)
                      .|..|+||+++|+|||||||++|.|..+++++++.|++|..++|++++.+++...+
T Consensus        40 s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~   95 (103)
T d1r3jc_          40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG   95 (103)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999965543

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.33  E-value=1.5e-12  Score=109.38  Aligned_cols=53  Identities=8%  Similarity=0.117  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE  337 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~  337 (559)
                      .|..|+||+++||||+||||++|+|..|++++++.++.|.+++|+++|.+.+.
T Consensus        60 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~  112 (116)
T d1xl4a2          60 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYAR  112 (116)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999987654

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.27  E-value=3.5e-12  Score=107.14  Aligned_cols=53  Identities=11%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSET  338 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~  338 (559)
                      |..|+||++.|+||+||||++|.|..+++++++.|++|.+++|+++|.+.+-.
T Consensus        62 ~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          62 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67799999999999999999999999999999999999999999999887543

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=98.92  E-value=3.6e-11  Score=93.50  Aligned_cols=50  Identities=14%  Similarity=0.260  Sum_probs=46.9

Q ss_pred             HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614          286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ  335 (559)
Q Consensus       286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~  335 (559)
                      |..|+||++.|+||+||||++|.|..+++++++.+++|..++++.++.++
T Consensus        28 ~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~   77 (80)
T d1lnqa2          28 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL   77 (80)
T ss_dssp             SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHT
T ss_pred             HHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44489999999999999999999999999999999999999999999875

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.83  E-value=0.0011  Score=46.05  Aligned_cols=18  Identities=22%  Similarity=0.503  Sum_probs=15.8

Q ss_pred             HHHHHHHHHhHhhccccc
Q 008614          285 KLLRCLHWGLQKLSAFGQ  302 (559)
Q Consensus       285 ~Yl~slYwa~~T~tTvGy  302 (559)
                      ..-.|+|||++|||||||
T Consensus        40 sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          40 TYPRALWWACETATTVGY   57 (57)
T ss_dssp             SHHHHHHHHHHHHTTCCC
T ss_pred             ccchhhhhheeeeecccC
Confidence            355699999999999998

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.38  E-value=0.00095  Score=55.63  Aligned_cols=47  Identities=9%  Similarity=0.012  Sum_probs=34.7

Q ss_pred             eehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccc
Q 008614           65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQ  140 (559)
Q Consensus        65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~  140 (559)
                      ..+..+|.++-++|.+|.++++..+-. +                    ..  .      ..|-++|+++++|...
T Consensus        37 ~~l~~~e~v~~~iF~~E~~lrl~~~~~-~--------------------~~--~------~~~~~iDl~ai~p~~~   83 (132)
T d1orsc_          37 VRLYLVDLILVIILWADYAYRAYKSGD-P--------------------AG--Y------VKKTLYEIPALVPAGL   83 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTS-T--------------------TT--T------TTTCGGGTGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc-c--------------------ce--e------CCcchHHHHHHHHHHH
Confidence            456899999999999999999886421 1                    00  0      2356799999999754

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.39  E-value=1.8  Score=33.45  Aligned_cols=68  Identities=12%  Similarity=0.093  Sum_probs=49.4

Q ss_pred             CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614          429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN  508 (559)
Q Consensus       429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~  508 (559)
                      +....+.||+.+-.---..++++++++|++++..+++   ...+++|+.+=-       ...        ....++|.++
T Consensus        39 i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~~~~---~~~l~~Gd~~~i-------p~~--------~~H~~~a~~~  100 (112)
T d1yhfa1          39 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE---TYRVAEGQTIVM-------PAG--------IPHALYAVEA  100 (112)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE---EEEEETTCEEEE-------CTT--------SCEEEEESSC
T ss_pred             EEEEEECCCCCcceEECCCCEEEEEEeCEEEEEEccE---EEEecCCEEEEc-------CCC--------CeEEeEECCC
Confidence            3445578999887655556889999999999877554   368899998631       211        4567899999


Q ss_pred             EEEEEE
Q 008614          509 VEGFTL  514 (559)
Q Consensus       509 ~~l~~L  514 (559)
                      ++++.+
T Consensus       101 ~~~l~~  106 (112)
T d1yhfa1         101 FQMLLV  106 (112)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            888765

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=81.55  E-value=8.3  Score=28.54  Aligned_cols=92  Identities=14%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             hcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEE
Q 008614          427 GCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTII  504 (559)
Q Consensus       427 ~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~  504 (559)
                      ..++|..|.+.|.|+.+=|+.+...|+.+|.....+  ++|...-...-+|.+.=-..+   ++..     .|.--.+..
T Consensus         9 ngikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnlqyykgafiimsg~---idt~-----~~lgyynle   80 (131)
T d2bgca2           9 NGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGF---IDTE-----TSVGYYNLE   80 (131)
T ss_dssp             TTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEEESSEEEESBC---TTTC-----CBSCCCEEE
T ss_pred             cCCChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEeeeeccccEEEEecc---cccC-----Cccceeeee
Confidence            468999999999999999999999999999998654  666432234556666433222   1221     111223333


Q ss_pred             -EcceEEEEEEeHHHHHHHHHhc
Q 008614          505 -AHTNVEGFTLKTDELKHGIALH  526 (559)
Q Consensus       505 -A~~~~~l~~L~~~~f~~ll~~~  526 (559)
                       ..+....+.+...|+.+++...
T Consensus        81 vise~atayvikisdlk~lvs~d  103 (131)
T d2bgca2          81 VISEQATAYVIKINELKELLSKN  103 (131)
T ss_dssp             ECSSEEEEEEEEHHHHHHHHHHC
T ss_pred             eehhcceeeeEEHHHHHHHHHHh
Confidence             3355778999999999988764