Citrus Sinensis ID: 008615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLLAPKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK
Secondary Structure (PSIPRED)
ccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccEHHHHHHHHHHHHHHHHHHHcccccHHHHEccccccccHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
maftssigppftlnlphlhqptsqksfyfrckansnpsskslspfkannflstkpllapkfnvktrksvgaqreysaggedesrisdatnqeafswssvilpflfpalggllfgydigatsgatislqspelsgttwFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLamhgaplyiaetcpsqiRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIgmwslppsprWLLLRAVQGKGSLQEYKEQAISALGklrrrppgdklserQIEDTLVSLKSsytdeksegsflevfqgpnlkafIIGGGLVLFQQitgqpsvlyyagpilqsagfsaaadaTRVSVVIGVFKLVMTWIAVAKvddlgrrplliGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCyqisfgpiswlmvseifplrtrgrgISLAVLTnfgsnaivtFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTvpetkglsLEEIESKILK
Flexible Loop (DISEMBL)
MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNflstkpllapkfnvktrksvgaqreysaggedesrisDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAIsalgklrrrppgdklserqieDTLVSLKssytdeksegsfLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVpetkglsleeieskilk
Low Complexity Region (SEG)
MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLLAPKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVIlpflfpalggllfgYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIaavlyalgalttayapglgvllvgrllyglgiglAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMwslppsprwlllrAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCgialsllllsayykilgGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENifllfaaiaflavlfivRTVPETKGLSLEEIESKILK
Disordered region (IsUnstruct)
**************************FYF***************************************************************AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG*************************************************FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET**************
Disordered Region (DISOPRED)
********PPFT**************************************************************************************VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQI**********************VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL*
Disordered Region (DISEMBL)
MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLLAPKFNVKT*********************DATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE********
Disordered Region (DISPRO)
*******************************************************************************************EAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLLAPKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	559	2.2.26 [Sep-21-2011]
Q0WWW9	558	D-xylose-proton symporter	yes	no	0.991	0.992	0.746	0.0
Q6AWX0	503	D-xylose-proton symporter	no	no	0.851	0.946	0.628	1e-165
Q8L6Z8	503	D-xylose-proton symporter	no	no	0.862	0.958	0.579	1e-155
C0SPB2	457	Putative metabolite trans	yes	no	0.774	0.947	0.359	3e-64
O52733	457	D-xylose-proton symporter	yes	no	0.769	0.940	0.342	4e-64
O34718	473	Major myo-inositol transp	no	no	0.796	0.940	0.328	4e-61
P46333	461	Probable metabolite trans	no	no	0.763	0.926	0.346	1e-60
Q0WUU6	526	Probable polyol transport	no	no	0.844	0.897	0.316	1e-57
Q9XIH7	511	Putative polyol transport	no	no	0.803	0.878	0.318	2e-56
P0AEP1	464	Galactose-proton symporte	N/A	no	0.801	0.965	0.325	3e-56

>sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/563 (74%), Positives = 464/563 (82%), Gaps = 9/563 (1%)

Query: 1   MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
           MAF  S+   F    L   H   P+ +    F     S P S  LS  +   F+S   L+
Sbjct: 1   MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57

Query: 58  APKFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
             ++    +       E++  GE  +S  SDA   E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58  TTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115

Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
           IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175

Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
           IIAAVLY LG+L T  AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235

Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
           KELFIVLGILLG+ VGSFQI+ VGGWRYMYG   P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295

Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
           GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D  +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355

Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
           NLKA  IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415

Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
           VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475

Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 536
           WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF  IA +++L
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535

Query: 537 FIVRTVPETKGLSLEEIESKILK 559
           F++  VPETKGLSLEEIESKILK
Sbjct: 536 FVILVVPETKGLSLEEIESKILK 558

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1

 Score =  583 bits (1503), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/479 (62%), Positives = 371/479 (77%), Gaps = 3/479 (0%)

Query: 80  EDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFN 139
           E E  I +    E +S  + ILPFLFPALGGLL+GY+IGATS ATISLQSP LSG +W+N
Sbjct: 28  EREPLIKENHVPENYSVVAAILPFLFPALGGLLYGYEIGATSCATISLQSPSLSGISWYN 87

Query: 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 199
           LS+V +GLV SGSLYGAL GSI+ ++IAD +GR++ELI+AA+LY +GAL TA AP   VL
Sbjct: 88  LSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVL 147

Query: 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259
           ++GR++YG+ +GLAMH AP+YIAET PS IRG L+SLKE FIVLG++ GY +GS  +N  
Sbjct: 148 IIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVH 207

Query: 260 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 319
            GWRYMY  S PLA++MGIGMW LP SPRWLLLR +QGKG+++  +E AI +L  LR   
Sbjct: 208 SGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPA 267

Query: 320 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSV 379
             D  +E Q+ + L  L  ++  E  E +F E+FQG  LKA IIGGGLVLFQQITGQPSV
Sbjct: 268 FVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITGQPSV 324

Query: 380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439
           LYYA  ILQ+AGFSAA DATRVS+++G+ KL+MT +AV  +D LGRRPLL+GGV G+ +S
Sbjct: 325 LYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVS 384

Query: 440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499
           L LL +YY      P+VAV ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRG+SLAVL 
Sbjct: 385 LFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLV 444

Query: 500 NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 558
           NFG+NA+VTFAFSPLKELLGA  +F  F  I  L+++FI   VPETKGL+LEEIE+K L
Sbjct: 445 NFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPETKGLTLEEIEAKCL 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1

 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/488 (57%), Positives = 363/488 (74%), Gaps = 6/488 (1%)

Query: 74  EYSAGG---EDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSP 130
           + S+GG   E E  + +  + E +S  + I PFLFPALG LLFGY+IGATS A +SL+SP
Sbjct: 19  DSSSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSP 78

Query: 131 ELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 190
            LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+AA LY +GA+ T
Sbjct: 79  TLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVT 138

Query: 191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF 250
             AP   +L++GR+ YG+GIGL MH AP+YIAET PSQIRG +ISLKE   VLG++ GY 
Sbjct: 139 VVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYG 198

Query: 251 VGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAIS 310
           +GS  I  + GWRYMY    P  ++MG GM  LP SPRWLLLRA+QG+G+ +  ++ AI 
Sbjct: 199 IGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIR 258

Query: 311 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 370
           +L +LR     D  +E Q+ + L  L  S   E  E +F E+F+G  LKA  I GGLVLF
Sbjct: 259 SLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGLVLF 315

Query: 371 QQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 430
           QQITGQPSVLYYA  ILQ+AGFSAAADATR+S+++G+ KLVMT ++V  +D +GRRPLL+
Sbjct: 316 QQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLL 375

Query: 431 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 490
            GV G+ +SL LL +YY      P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RG
Sbjct: 376 CGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRG 435

Query: 491 RGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 550
           RGISLAVL NFG+NA+VTFAFSPLKELLGA  +F  F  I  +++ FI   VPETKGL+L
Sbjct: 436 RGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKGLTL 495

Query: 551 EEIESKIL 558
           EEIE+K L
Sbjct: 496 EEIEAKCL 503

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  246 bits (629), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 167/464 (35%), Positives = 249/464 (53%), Gaps = 31/464 (6%)

Query: 97  SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGA 156
            S I  + F ALGG L+GYD G  SGA + ++           L+A   GLVVS  L GA
Sbjct: 4   QSNIWLYFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGA 56

Query: 157 LLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216
           +LGS     + D  GRK+ ++ AA+L+ +G L  A AP  GV+++ R++ GL +G +   
Sbjct: 57  ILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTI 116

Query: 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 276
            PLY++E  P   RG L SL +L I +GILL Y V     +A   WR+M GL+A  +LL+
Sbjct: 117 VPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADA-EAWRWMLGLAAVPSLLL 175

Query: 277 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 336
            IG+  +P SPRWL           +E K + I  L KLR    G K  +++I D     
Sbjct: 176 LIGILFMPESPRWLFTNG-------EESKAKKI--LEKLR----GTKDIDQEIHDI---- 218

Query: 337 KSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA 396
                +++ EG   E+F      A I G GL   QQ  G  +++YYA     + GF  +A
Sbjct: 219 --KEAEKQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSA 276

Query: 397 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456
                +V IG   ++MT +A+  +D +GR+PLL+ G  G+ +SL++L+         P  
Sbjct: 277 SILG-TVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAA 335

Query: 457 A---VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 513
           +   V  L +++  + +S+GP+ W+M+ E+FPL  RG G  ++ L       IV+  +  
Sbjct: 336 SWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPI 395

Query: 514 LKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 557
           L E +G   +FL++AAI  +A LF+   V ETKG SLEEIE  +
Sbjct: 396 LMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDL 439

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 255/458 (55%), Gaps = 28/458 (6%)

Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
           + F ALGGLLFGYD G  SGA + +Q          NL + Q G VVS  L GA+LG+ +
Sbjct: 10  YFFGALGGLLFGYDTGVISGAILFIQKQ-------MNLGSWQQGWVVSAVLLGAILGAAI 62

Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
           +   +D  GR++ L+++A+++ +GAL +A++P    L++ R++ G+ +G A    P Y+A
Sbjct: 63  IGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLA 122

Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
           E  PS  RGT+ SL +L ++ GILL Y           GWR+M G +A  A L+ +G   
Sbjct: 123 ELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLFLGGLI 182

Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
           LP SPR+L+       G L E +   +  + K  +     ++++ Q    +VS       
Sbjct: 183 LPESPRFLV-----KSGHLDEAR-HVLDTMNKHDQVAVNKEINDIQESAKIVS------- 229

Query: 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 402
               G + E+F      + IIG GL +FQQ+ G  +VLYYA  I    GF  +A A    
Sbjct: 230 ----GGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSA-ALLAH 284

Query: 403 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG---FPLVAVS 459
           + IG+F +++T IAVA +D + R+ ++  G  G+ +SL ++S   K  GG     +++V 
Sbjct: 285 IGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVI 344

Query: 460 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 519
           AL +Y+  +  ++GP+ W+M+ E+FPL  RG G S A + N+ +N IV+  F  L +  G
Sbjct: 345 ALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFG 404

Query: 520 AENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 557
             ++F+ +  + F ++ F+ + V ET+  SLE+IE+ +
Sbjct: 405 TGSLFIGYGILCFASIWFVQKKVFETRNRSLEDIEATL 442

Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Lactobacillus brevis (taxid: 1580)

>sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1

 Score =  236 bits (601), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 255/475 (53%), Gaps = 30/475 (6%)

Query: 90  NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 149
           N++    S +    L    GGLLFGYD G  +GA   +  P+       NL+A   GLV 
Sbjct: 2   NKQGNQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPD-----QLNLNAFTEGLVT 56

Query: 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 209
           S  L+GA LG++    ++DF GR++ ++  AV++ +  +   +AP + V+++ R + G+ 
Sbjct: 57  SSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIA 116

Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG----WRYM 265
           +G A    P Y+AE  P + RG +++  EL IV G LL +   +     +G     WR+M
Sbjct: 117 VGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFM 176

Query: 266 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS 325
             +++  AL +  GM  +P SPRWL+      KG     KE A+  L K+R     +K +
Sbjct: 177 LVIASLPALFLFFGMIRMPESPRWLV-----SKGR----KEDALRVLKKIR----DEKRA 223

Query: 326 ERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI-IGGGLVLFQQITGQPSVLYYAG 384
             ++++   + K     EK+    L V   P ++  + IG G+ + QQITG  S++YY  
Sbjct: 224 AAELQEIEFAFKKEDQLEKATFKDLSV---PWVRRIVFIGLGIAIVQQITGVNSIMYYGT 280

Query: 385 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 444
            IL+++GF   A A   ++  GV  ++ T++ +  +  +GRRP+L+ G+ G   +LLL+ 
Sbjct: 281 EILRNSGFQTEA-ALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIG 339

Query: 445 AYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 501
            +  +L G    P V +S  + ++   Q +  P++WLM+SEIFPLR RG G+ + V   +
Sbjct: 340 IFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLW 399

Query: 502 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 556
             N  V+F F  L   +G    F +F  +   +VLF+ R +PETKGLSLE++E  
Sbjct: 400 MVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQLEEN 454

Major myo-inositol uptake transporter.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 248/459 (54%), Gaps = 32/459 (6%)

Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
           + F ALGGLL+GYD G  SGA + + +          L+ +  GLVVS  L GA+ GS L
Sbjct: 11  YFFGALGGLLYGYDTGVISGALLFINND-------IPLTTLTEGLVVSMLLLGAIFGSAL 63

Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
             + +D  GR++ + + ++++ +GAL  A++  +G+L+  R++ GL +G +    P+Y++
Sbjct: 64  SGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLS 123

Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
           E  P++IRGTL ++  L IV GILL Y V ++       WR+M GL+A  A+L+ IG+  
Sbjct: 124 EMAPTKIRGTLGTMNNLMIVTGILLAYIV-NYLFTPFEAWRWMVGLAAVPAVLLLIGIAF 182

Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
           +P SPRWL+ R     GS +E             RR        + IE  L  +K    +
Sbjct: 183 MPESPRWLVKR-----GSEEE------------ARRIMNITHDPKDIEMELAEMKQGEAE 225

Query: 343 EKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 401
           +K   + L V +   ++   +IG GL +FQQ  G  +V+YYA  I   AG   +A A   
Sbjct: 226 KKE--TTLGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALG- 282

Query: 402 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG---GFPLVAV 458
           ++ IG+  ++M   A+  +D +GR+ LLI G  GI LSL  LS     LG       + V
Sbjct: 283 TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTV 342

Query: 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 518
             L +Y+  YQ ++GP+ W+++ E+FP + RG       L    +N IV+  F  +   +
Sbjct: 343 VFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAM 402

Query: 519 GAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 557
           G   +F++F+ I  L+  F    VPETKG SLEEIE+ +
Sbjct: 403 GIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEASL 441

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/505 (31%), Positives = 249/505 (49%), Gaps = 33/505 (6%)

Query: 59  PKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIG 118
           P  +V  +K+   + +  A      R ++A N     +  V+    F +L  +L GYD+G
Sbjct: 17  PAVSVGNKKNKYQRMDSDAEESQNHREAEARNSRTRKY--VMACAFFASLNNVLLGYDVG 74

Query: 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 178
             SGA + +Q           ++ VQ  +++      +L GS+     +D +GRK  + +
Sbjct: 75  VMSGAVLFIQQD-------LKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMAL 127

Query: 179 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238
           AA+++  GA   A AP   VL++GR L G+GIGL +  AP+YIAE  P+  RG   S  E
Sbjct: 128 AALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPE 187

Query: 239 LFIVLGILLGYFVGSFQINAVG---GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 295
           +FI LGILLGY V ++  + +     WR M  +    ++ +G  +  +P SPRWL++   
Sbjct: 188 IFINLGILLGY-VSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVM--- 243

Query: 296 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 355
             KG +   +E     L K   R   D+  ER  E   + L +++T+   +         
Sbjct: 244 --KGRVDSARE----VLMKTNERD--DEAEERLAE---IQLAAAHTEGSEDRPVWRELLS 292

Query: 356 PN---LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVM 412
           P+    K  I+G G+  FQQITG  + +YY+  IL+ AG          +V +GV K V 
Sbjct: 293 PSPVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVF 352

Query: 413 TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGC---YQ 469
              A   +D +GR+PLL     G+ L L  LS     LG   L    ALL   G    + 
Sbjct: 353 ILFATFLIDSVGRKPLLYVSTIGMTLCLFCLSFTLTFLGQGTLGITLALLFVCGNVAFFS 412

Query: 470 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 529
           I  GP+ W++ SEIFPLR R +  +L  + N   + +V  +F  +   +     F +F+ 
Sbjct: 413 IGMGPVCWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSL 472

Query: 530 IAFLAVLFIVRTVPETKGLSLEEIE 554
           ++ L+V+F+   VPET G SLE+IE
Sbjct: 473 VSALSVIFVYVLVPETSGKSLEQIE 497

Plasma membrane sugar-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/484 (31%), Positives = 250/484 (51%), Gaps = 35/484 (7%)

Query: 90  NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 149
           N+  ++++  IL     ++  ++ GYDIG  SGA+I ++           LS VQL +++
Sbjct: 21  NRSRYAFACAILA----SMTSIILGYDIGVMSGASIFIKDD-------LKLSDVQLEILM 69

Query: 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 209
                 +L+GS      +D+LGR+  +++A   +  GAL   +A     ++VGR + G+G
Sbjct: 70  GILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIG 129

Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYG 267
           +G AM  AP+Y AE  P+  RG L S  E+FI +GILLGY    F  ++    GWR+M G
Sbjct: 130 VGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLG 189

Query: 268 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG-----SLQEYKEQAISALGKLRRRP--P 320
           + A  ++ + IG+ ++P SPRWL+L+   G            KE+AIS L  ++R    P
Sbjct: 190 VGAVPSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIP 249

Query: 321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG-GLVLFQQITGQPSV 379
            D      + D ++ + +  +  K     L V   P+++  +I   G+   QQ +G  +V
Sbjct: 250 DD------MTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAV 303

Query: 380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439
           + Y+  I   AG  +  D    +V +GV K +   +    VD  GRR LL+  + G+ LS
Sbjct: 304 VLYSPTIFSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLS 363

Query: 440 LLLLSAYYKILGGFP--------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 491
           L  L     ++   P         +AV+ ++ +V  + I  GP++W+  SEIFP+R R +
Sbjct: 364 LTALGTSLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQ 423

Query: 492 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 551
           G SL V+ N   + I+   F  L + L     FLLFA +A  A +F    +PET+G+ LE
Sbjct: 424 GASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLE 483

Query: 552 EIES 555
           E+E+
Sbjct: 484 EMET 487

Plasma membrane sugar-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AEP1|GALP_ECOLI Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1

 Score =  220 bits (560), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 254/476 (53%), Gaps = 28/476 (5%)

Query: 87  DATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLG 146
           DA  Q   + +         AL GLLFG DIG  +GA      P ++    F +++    
Sbjct: 3   DAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGAL-----PFIADE--FQITSHTQE 55

Query: 147 LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 206
            VVS  ++GA +G++    ++  LGRK+ L+I A+L+  G+L +A AP + VL++ R+L 
Sbjct: 56  WVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLL 115

Query: 207 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 266
           GL +G+A + APLY++E  P +IRG++IS+ +L I +GI LG ++     +  G WR+M 
Sbjct: 116 GLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGI-LGAYLSDTAFSYTGAWRWML 174

Query: 267 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 326
           G+    A+L+ IG++ LP SPRW          + +     A   L +LR      K   
Sbjct: 175 GVIIIPAILLLIGVFFLPDSPRWF---------AAKRRFVDAERVLLRLRDTSAEAKREL 225

Query: 327 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 386
            +I ++L   +S +   K   +F         +A  +G  L + QQ TG   ++YYA  I
Sbjct: 226 DEIRESLQVKQSGWALFKENSNF--------RRAVFLGVLLQVMQQFTGMNVIMYYAPKI 277

Query: 387 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 446
            + AG++   +    +V++G+  ++ T+IA+  VD  GR+P L  G   +A  + +L   
Sbjct: 278 FELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTM 337

Query: 447 YKILGGFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 503
             I    P     A++ LL+++  + +S GP+ W++ SEI PL+ R  GI+ +  TN+ +
Sbjct: 338 MHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIA 397

Query: 504 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 559
           N IV   F  +   LG  N F ++AA+  L +L  +  VPETK +SLE IE  ++K
Sbjct: 398 NMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMK 453

Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
356542274	560	PREDICTED: D-xylose-proton symporter-lik	0.974	0.973	0.767	0.0
356538970	552	PREDICTED: D-xylose-proton symporter-lik	0.980	0.992	0.761	0.0
388498682	563	unknown [Lotus japonicus]	0.899	0.893	0.807	0.0
297796853	559	hypothetical protein ARALYDRAFT_919128 [	0.996	0.996	0.748	0.0
42568650	558	D-xylose-proton symporter-like 3 [Arabid	0.991	0.992	0.746	0.0
110740547	558	D-xylose-H+ symporter - like protein [Ar	0.991	0.992	0.744	0.0
449455084	585	PREDICTED: D-xylose-proton symporter-lik	0.989	0.945	0.757	0.0
225434857	561	PREDICTED: putative vacuolar glucose tra	0.974	0.971	0.787	0.0
255558992	505	sugar transporter, putative [Ricinus com	0.892	0.988	0.859	0.0
77999788	552	putative sugar transporter [Nicotiana la	0.865	0.876	0.830	0.0

>gi|356542274|ref|XP_003539594.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/555 (76%), Positives = 474/555 (85%), Gaps = 10/555 (1%)

Query: 9   PPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLS----TKPLLAPKFNVK 64
           P F  N  H  +    KS        S+P +        N+ L+    T PLL      K
Sbjct: 12  PLFNFNPLHHRRIKRPKSLL------SSPRNSPRLVSSINDHLALTRVTYPLLQSHSAPK 65

Query: 65  TRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGAT 124
            R  VG Q+EYS G   ES +SDAT QE FSWSSV+LPFLFPALGGLLFGYDIGATSGAT
Sbjct: 66  RRFHVGVQKEYSDGESSESIVSDATYQEEFSWSSVVLPFLFPALGGLLFGYDIGATSGAT 125

Query: 125 ISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184
           ISLQSPELSG +WFNLSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++LI AA+LY 
Sbjct: 126 ISLQSPELSGISWFNLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYL 185

Query: 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244
            G + TAYAP LGVLL GRL+YGLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLG
Sbjct: 186 FGGVITAYAPELGVLLAGRLIYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLG 245

Query: 245 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEY 304
           ILLGYFVGSF I  VGGWR+MYG SAP+A+LMG+GMW+LP SPRWLLLRAVQGKGS Q+ 
Sbjct: 246 ILLGYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMWTLPNSPRWLLLRAVQGKGSFQDL 305

Query: 305 KEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 364
           KEQAI++L KLR RPPGDK SE+QIE+TLVSLKS Y D++SEG+FLEVFQGPNLKAFIIG
Sbjct: 306 KEQAIASLSKLRGRPPGDKESEKQIEETLVSLKSVYADQESEGNFLEVFQGPNLKAFIIG 365

Query: 365 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424
           GGLVLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLG
Sbjct: 366 GGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLG 425

Query: 425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 484
           RRPLLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+F
Sbjct: 426 RRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVF 485

Query: 485 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 544
           PLRTRG+GISLAVLTNF SNA+VTFAFSPLKE LGAEN+FLLF AIA L++LFI+ +VPE
Sbjct: 486 PLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIATLSLLFIIFSVPE 545

Query: 545 TKGLSLEEIESKILK 559
           TKG+SLE+IESKILK
Sbjct: 546 TKGMSLEDIESKILK 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538970|ref|XP_003537973.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max]

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/563 (76%), Positives = 473/563 (84%), Gaps = 15/563 (2%)

Query: 1   MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLS----TKPL 56
           MA T+      +LN  H  Q T  KS        +NP   S      NN L+    T PL
Sbjct: 1   MASTTLFSFRLSLNPLHHQQTTRPKSLL--SSPRTNPRLVS----SINNHLALTRVTYPL 54

Query: 57  LAPKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
           L      K R  V     YS G   ES +SDAT QE FSWSSVILPFLFPALGGLLFGYD
Sbjct: 55  LQSHSAPKRRFHV-----YSDGESSESLVSDATYQEEFSWSSVILPFLFPALGGLLFGYD 109

Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
           IGATSGATISLQSPELSG +WF LSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++L
Sbjct: 110 IGATSGATISLQSPELSGISWFKLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQL 169

Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
           I AA+LY  G + TAYAP LGVLL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL+SL
Sbjct: 170 ITAALLYLFGGVITAYAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSL 229

Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
           KELFIVLGILLGYFVGSF I  VGGWR+MYG SAP+A+LMG+GM +LP SPRWLLLRAVQ
Sbjct: 230 KELFIVLGILLGYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMLTLPNSPRWLLLRAVQ 289

Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
           GKGS Q+ KE+AI +L KLR RPPGDK SERQ+E+TLVSLKS+Y D++SEG+FLEVFQGP
Sbjct: 290 GKGSFQDLKEKAIFSLSKLRGRPPGDKESERQVEETLVSLKSAYADKESEGNFLEVFQGP 349

Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
           NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIA
Sbjct: 350 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIA 409

Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
           V KVDDLGRRPLLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 410 VLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 469

Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 536
           WLMVSE+FPLRTRG+GISLAVLTNF SNA+VTFAFSPLKE LGAEN+FLLF AIA L++L
Sbjct: 470 WLMVSEVFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIAILSLL 529

Query: 537 FIVRTVPETKGLSLEEIESKILK 559
           FI+ +VPETKGLSLE+IESKILK
Sbjct: 530 FIIFSVPETKGLSLEDIESKILK 552

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498682|gb|AFK37407.1| unknown [Lotus japonicus]

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/513 (80%), Positives = 459/513 (89%), Gaps = 10/513 (1%)

Query: 53  TKPLL----AP--KFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFP 106
           T PLL    AP  +F+V+++K    Q+ YSAGG+ E   SDA  QE FS SSVILPFLFP
Sbjct: 55  TYPLLPSSSAPNSRFHVRSQK----QKVYSAGGKSEPLASDAKYQEEFSLSSVILPFLFP 110

Query: 107 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSI 166
           ALGGLLFGYDIGATSGATISLQSPELSG TWFNLS++QLGLVVSGSLYGALLGSIL +++
Sbjct: 111 ALGGLLFGYDIGATSGATISLQSPELSGITWFNLSSIQLGLVVSGSLYGALLGSILAFAV 170

Query: 167 ADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP 226
           ADFLGRKR+LI+AA+LY LG   TA AP L VLL GRLLYGLGIGLAMHGAPLYIAETCP
Sbjct: 171 ADFLGRKRQLIVAALLYILGGAITAAAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCP 230

Query: 227 SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 286
           SQIRGTL+SLKELFIVLGIL GYFVGSFQI++VGGWR+MYG SAP+A+LMG+GMW+LP S
Sbjct: 231 SQIRGTLVSLKELFIVLGILGGYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPAS 290

Query: 287 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 346
           PRWLLL+AVQGKGS Q+ KE+AI +L KLR RPPGDK SERQIE+TLVSLKS+Y D++SE
Sbjct: 291 PRWLLLKAVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESERQIEETLVSLKSAYKDQESE 350

Query: 347 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG 406
           G+FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG ILQSAGFSAA+DAT+VSVVIG
Sbjct: 351 GNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGSILQSAGFSAASDATKVSVVIG 410

Query: 407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 466
           +FKL MTW+AV KVDDLGRRPLLI GV GI LSL LLSAYYK LGGFPLVAV ALLLYVG
Sbjct: 411 LFKLQMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAYYKFLGGFPLVAVGALLLYVG 470

Query: 467 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 526
           CYQISFGPISWLMVSE FP+RTRGRGISLAVLTNF SNA+VTFAFSPLKELLGAEN+FLL
Sbjct: 471 CYQISFGPISWLMVSETFPIRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLL 530

Query: 527 FAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 559
           F AI+ +A+LF++ +VPETKGLSLEEIESKILK
Sbjct: 531 FGAISLVALLFVIFSVPETKGLSLEEIESKILK 563

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796853|ref|XP_002866311.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] gi|297312146|gb|EFH42570.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata]

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/561 (74%), Positives = 462/561 (82%), Gaps = 4/561 (0%)

Query: 1   MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTK-PLLAP 59
           MAF  S+   F +      Q     S    C    + S  S    K    L +K  L+  
Sbjct: 1   MAFAVSVQSHFAIRDLKRDQFKKNPSPRTSCSCFKSRSDSSYLSLKERTCLVSKLGLVTT 60

Query: 60  KFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIG 118
           ++  K +   G   E + GGE  +S  SDA   E+FSWSSVILPF+FPALGGLLFGYDIG
Sbjct: 61  RYRAKFQVGAGTGGELADGGEVADSIASDAL--ESFSWSSVILPFIFPALGGLLFGYDIG 118

Query: 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 178
           ATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELII
Sbjct: 119 ATSGATLSLQSPVLSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELII 178

Query: 179 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238
           AAVLY LG+L T  AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKE
Sbjct: 179 AAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238

Query: 239 LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGK 298
           LFIVLGILLG+ VGSFQI+ VGGWRYMYG   P+ALLMG+GMWSLP SPRWLLLRAVQGK
Sbjct: 239 LFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGK 298

Query: 299 GSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358
           G LQEYKE+A+ AL KLR RPPGDK+SE+ ++D  +S+K++Y DEKS G+FLEVFQGPNL
Sbjct: 299 GQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNL 358

Query: 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVA 418
           KA  IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVA
Sbjct: 359 KALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVA 418

Query: 419 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 478
           KVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWL
Sbjct: 419 KVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWL 478

Query: 479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 538
           MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF  IA +++LF+
Sbjct: 479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFV 538

Query: 539 VRTVPETKGLSLEEIESKILK 559
           +  VPETKGLSLEEIESKILK
Sbjct: 539 ILVVPETKGLSLEEIESKILK 559

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568650|ref|NP_200733.2| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] gi|117940085|sp|Q0WWW9.2|XYLL3_ARATH RecName: Full=D-xylose-proton symporter-like 3, chloroplastic; Flags: Precursor gi|9759246|dbj|BAB09770.1| sugar transporter-like protein [Arabidopsis thaliana] gi|51536478|gb|AAU05477.1| At5g59250 [Arabidopsis thaliana] gi|56381949|gb|AAV85693.1| At5g59250 [Arabidopsis thaliana] gi|332009779|gb|AED97162.1| D-xylose-proton symporter-like 3 [Arabidopsis thaliana]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/563 (74%), Positives = 464/563 (82%), Gaps = 9/563 (1%)

Query: 1   MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
           MAF  S+   F    L   H   P+ +    F     S P S  LS  +   F+S   L+
Sbjct: 1   MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57

Query: 58  APKFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
             ++    +       E++  GE  +S  SDA   E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58  TTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115

Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
           IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175

Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
           IIAAVLY LG+L T  AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235

Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
           KELFIVLGILLG+ VGSFQI+ VGGWRYMYG   P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295

Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
           GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D  +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355

Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
           NLKA  IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415

Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
           VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475

Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 536
           WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF  IA +++L
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535

Query: 537 FIVRTVPETKGLSLEEIESKILK 559
           F++  VPETKGLSLEEIESKILK
Sbjct: 536 FVILVVPETKGLSLEEIESKILK 558

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740547|dbj|BAE98379.1| D-xylose-H+ symporter - like protein [Arabidopsis thaliana]

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/563 (74%), Positives = 464/563 (82%), Gaps = 9/563 (1%)

Query: 1   MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
           MAF  S+   F    L   H   P+ +    F     S P S  LS  +   F+S   L+
Sbjct: 1   MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57

Query: 58  APKFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
             ++    +       +++  GE  +S  SDA   E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58  TTRYRHIFQVGAETGGDFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115

Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
           IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175

Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
           IIAAVLY LG+L T  AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235

Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
           KELFIVLGILLG+ VGSFQI+ VGGWRYMYG   P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295

Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
           GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D  +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355

Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
           NLKA  IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415

Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
           VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475

Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 536
           WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF  IA +++L
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535

Query: 537 FIVRTVPETKGLSLEEIESKILK 559
           F++  VPETKGLSLEEIESKILK
Sbjct: 536 FVILVVPETKGLSLEEIESKILK 558

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455084|ref|XP_004145283.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] gi|449470902|ref|XP_004153144.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/569 (75%), Positives = 481/569 (84%), Gaps = 16/569 (2%)

Query: 1   MAFTSSIGPPFTLNLPH-----LHQPTSQKSFYFRCKANSNPSSKSL-SPFKANNFLSTK 54
           MAF+  I P FT    H      H   SQ  F      +S P++  L S F AN   S  
Sbjct: 23  MAFSLPIRPLFTPKPSHSYTRKAHLKASQVLF------SSTPTTPLLVSSFTANLEASFH 76

Query: 55  PLLAPKFNVKTR---KSVGAQREYSAGGEDESRI-SDATNQEAFSWSSVILPFLFPALGG 110
             ++     K R   K  G + +YS+G E+   + S+A N+E FSWSSVILPFLFPALGG
Sbjct: 77  NPISSSSVSKLRLIPKVGGDRADYSSGEEETKSVDSEAANEEEFSWSSVILPFLFPALGG 136

Query: 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL 170
           LLFGYDIGATSGAT+SLQSPELSGT+WFNLSAVQLGLVVSGSLYGALLGS+LVY IADFL
Sbjct: 137 LLFGYDIGATSGATLSLQSPELSGTSWFNLSAVQLGLVVSGSLYGALLGSLLVYPIADFL 196

Query: 171 GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR 230
           GR+RELIIAA LYA+G+LTTAY+P LG LL GRLLYGLGIGLAMHGAPLYIAETCPS+IR
Sbjct: 197 GRRRELIIAAGLYAIGSLTTAYSPDLGFLLAGRLLYGLGIGLAMHGAPLYIAETCPSKIR 256

Query: 231 GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWL 290
           GTL+SLKELFIVLGIL+GY  GS QINAVGGWRYMYGLSAP+A +MG+GMW LPPSPRWL
Sbjct: 257 GTLVSLKELFIVLGILMGYLFGSLQINAVGGWRYMYGLSAPVAFMMGLGMWLLPPSPRWL 316

Query: 291 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 350
           LLRA QGK   Q+ KE+AI+AL KLR RPPGDK+SE+QIE+T +SLKS+Y++++SEGS  
Sbjct: 317 LLRAAQGKAPSQDSKEEAIAALSKLRGRPPGDKVSEKQIEETFLSLKSAYSEQESEGSIW 376

Query: 351 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKL 410
           EV QGP+LKAFIIGGGLVLFQQITGQPSVLYYAGPILQ+AGF+AA DATRVSVVIGVFKL
Sbjct: 377 EVLQGPSLKAFIIGGGLVLFQQITGQPSVLYYAGPILQNAGFAAATDATRVSVVIGVFKL 436

Query: 411 VMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 470
           +MTW+AV KVDDLGRRPLLIGGV GIALSLLLLSAYYK LGGFP+VAV ALLLYVGCYQI
Sbjct: 437 LMTWVAVLKVDDLGRRPLLIGGVSGIALSLLLLSAYYKFLGGFPIVAVGALLLYVGCYQI 496

Query: 471 SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 530
           SFGPISWLMVSEIFPLRTRG+GISLAVLTNFGSNAIVTFAFSPLKELLGAEN+FLLF AI
Sbjct: 497 SFGPISWLMVSEIFPLRTRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGAI 556

Query: 531 AFLAVLFIVRTVPETKGLSLEEIESKILK 559
           A L++LF+V  VPETKGLSLE+IESKILK
Sbjct: 557 ALLSLLFVVLKVPETKGLSLEDIESKILK 585

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434857|ref|XP_002280634.1| PREDICTED: putative vacuolar glucose transporter [Vitis vinifera] gi|310877894|gb|ADP37178.1| putative vacuolar glucose transporter [Vitis vinifera]

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/555 (78%), Positives = 476/555 (85%), Gaps = 10/555 (1%)

Query: 11  FTLNLPH----LHQPTSQKSFYFRCKANSNPSSKSL--SPFKANNFLSTKPLLAPKFNVK 64
           F L L H    LH P   +S +F  K NS+PSS     S FK+  ++  KP L     + 
Sbjct: 11  FNLKLSHSHPALHHPKHSQSLFF--KFNSHPSSPFFYGSQFKSQTYMPPKPPLLQSSRLV 68

Query: 65  TRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGAT 124
            +  VGAQ E S+G E  S  SD   QE FSWSSV+LPFLFPALGGLLFGYDIGATSGAT
Sbjct: 69  FK--VGAQSEGSSGEETRSLDSDVKYQEVFSWSSVVLPFLFPALGGLLFGYDIGATSGAT 126

Query: 125 ISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184
           ISLQSPELSG TWF LSAVQLGLVVSGSLYGALLGSILVY IADFLGR+ ELI AA+LYA
Sbjct: 127 ISLQSPELSGITWFELSAVQLGLVVSGSLYGALLGSILVYPIADFLGRRGELITAAILYA 186

Query: 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244
           LG L TA AP L VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKEL IVLG
Sbjct: 187 LGGLITASAPELDVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELLIVLG 246

Query: 245 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEY 304
           ILLGYFVGSF+IN VGGWRYMYGLSAP+A LMG+G+W+LPPSPRWLLLRAVQGKGSLQE 
Sbjct: 247 ILLGYFVGSFEINEVGGWRYMYGLSAPIASLMGLGLWTLPPSPRWLLLRAVQGKGSLQEN 306

Query: 305 KEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 364
           KE+AI AL KLR RP GDK+S+ QIE TL SLKS+YTD++SEGSFLEVFQGP+LKAFIIG
Sbjct: 307 KEKAIHALSKLRGRPAGDKVSDMQIEHTLASLKSAYTDQESEGSFLEVFQGPSLKAFIIG 366

Query: 365 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424
           GGLVL QQITGQPSVLY+AG ILQ+AGFSAA+DATRVSV+IG FKL+MT IAV KVDD+G
Sbjct: 367 GGLVLSQQITGQPSVLYFAGSILQTAGFSAASDATRVSVLIGFFKLLMTGIAVLKVDDIG 426

Query: 425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 484
           RRPLLIGGV G+ALSLLLLSAYYK LGGFP+VAV+ALLLYVGCYQISFGPISWLMVSEIF
Sbjct: 427 RRPLLIGGVGGLALSLLLLSAYYKFLGGFPVVAVAALLLYVGCYQISFGPISWLMVSEIF 486

Query: 485 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 544
           PLRTRGRGISLAVLTNFGSNAIVTFAFSPL+ELLGAEN+FLLF  IA L++LF++  VPE
Sbjct: 487 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLEELLGAENLFLLFGIIALLSLLFVIVYVPE 546

Query: 545 TKGLSLEEIESKILK 559
           TKGLSLEEIESKILK
Sbjct: 547 TKGLSLEEIESKILK 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558992|ref|XP_002520519.1| sugar transporter, putative [Ricinus communis] gi|223540361|gb|EEF41932.1| sugar transporter, putative [Ricinus communis]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/499 (85%), Positives = 461/499 (92%)

Query: 61  FNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGAT 120
           F    R  +G   EYSAG E ES + D++ QEAFSWSSVILPFLFPALGGLLFGYDIGAT
Sbjct: 7   FISSPRPRLGLSVEYSAGEEAESVVPDSSPQEAFSWSSVILPFLFPALGGLLFGYDIGAT 66

Query: 121 SGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA 180
           SGATISLQSPELSGTTWFNLSA+QLGLVVSGSLYGALLGS+LVY IADFLGR+RELIIAA
Sbjct: 67  SGATISLQSPELSGTTWFNLSAIQLGLVVSGSLYGALLGSLLVYPIADFLGRRRELIIAA 126

Query: 181 VLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF 240
           VLY LG L TAYAP LG+LL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF
Sbjct: 127 VLYMLGGLITAYAPSLGILLGGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF 186

Query: 241 IVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGS 300
           IVLGIL+GYFVGSF+I+AVGGWRYMYGL AP+AL+MG+GM SLPPSPRWLLLRAVQG+ S
Sbjct: 187 IVLGILMGYFVGSFEISAVGGWRYMYGLGAPIALIMGLGMLSLPPSPRWLLLRAVQGRAS 246

Query: 301 LQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 360
           LQEYKE+A+ AL KLR RP GDK SE+QIEDTLVSLKS+Y++E+SEGS LEVFQGP+LKA
Sbjct: 247 LQEYKEKAVLALSKLRGRPLGDKESEKQIEDTLVSLKSAYSEEESEGSILEVFQGPSLKA 306

Query: 361 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 420
           FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV+IG+FKLVMTWIAV KV
Sbjct: 307 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVIIGLFKLVMTWIAVLKV 366

Query: 421 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMV 480
           DDLGRRPLLIGGV GIALSL LLSAYYK+LGGFP+VAV+ALLLYVG YQISFGPISWLMV
Sbjct: 367 DDLGRRPLLIGGVGGIALSLFLLSAYYKVLGGFPVVAVAALLLYVGSYQISFGPISWLMV 426

Query: 481 SEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 540
           SEIFPLRTRG+GISLAVLTNFGSNAIVTFAFSPLKELLGAEN+FLLF AIA LA+LF + 
Sbjct: 427 SEIFPLRTRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGAIALLALLFAIV 486

Query: 541 TVPETKGLSLEEIESKILK 559
            VPETKGLSLEEIESKILK
Sbjct: 487 YVPETKGLSLEEIESKILK 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999788|gb|ABB17074.1| putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/484 (83%), Positives = 441/484 (91%)

Query: 76  SAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGT 135
           S+G E ES  +++   E FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQS ELSGT
Sbjct: 69  SSGEEAESNNAESAYLEEFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSAELSGT 128

Query: 136 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG 195
           TW+N SAVQLGLVVSGSLYGAL GSIL Y  ADFLGR+RELIIAA+LYA G   TAYAPG
Sbjct: 129 TWYNFSAVQLGLVVSGSLYGALFGSILAYPFADFLGRRRELIIAALLYAAGGSLTAYAPG 188

Query: 196 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255
           LG LL+GRL+YGLGIGLAMHGAPLYIAETCP QIRGTL+SLKEL IVLGILLGYFVGS++
Sbjct: 189 LGALLLGRLVYGLGIGLAMHGAPLYIAETCPPQIRGTLVSLKELAIVLGILLGYFVGSYE 248

Query: 256 INAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKL 315
           IN VGGWRYM+GLSAP+ALLMG+GMWSLPPSPRWLLLRA+Q KG LQEYKE+A+ AL KL
Sbjct: 249 INVVGGWRYMFGLSAPIALLMGLGMWSLPPSPRWLLLRAIQSKGPLQEYKEKAMGALSKL 308

Query: 316 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG 375
           R RP GDK+SE+QIEDT++SLK++Y+DE++EG+FLEVFQGP+LKAFIIGGGLVLFQQITG
Sbjct: 309 RGRPAGDKVSEKQIEDTIISLKTAYSDEEAEGNFLEVFQGPSLKAFIIGGGLVLFQQITG 368

Query: 376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 435
           QPSVLYYAG ILQSAGFSAAADA RVSVVIG+FK +MT +AV K DDLGRRPLLIGGV G
Sbjct: 369 QPSVLYYAGSILQSAGFSAAADAARVSVVIGIFKSLMTAVAVLKADDLGRRPLLIGGVSG 428

Query: 436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 495
           IALSL LLSAYYK LG FP VAV+ALLLYVGCYQISFGPISWLMVSEIFPLRTRG+GISL
Sbjct: 429 IALSLFLLSAYYKFLGSFPFVAVAALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISL 488

Query: 496 AVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 555
           AVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF AIA L++LF+V +VPETKGLSLEEIES
Sbjct: 489 AVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGAIALLSLLFVVTSVPETKGLSLEEIES 548

Query: 556 KILK 559
           KILK
Sbjct: 549 KILK 552

Source: Nicotiana langsdorffii x Nicotiana sanderae

Species: Nicotiana langsdorffii x Nicotiana sanderae

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
TAIR|locus:2168494	558	AT5G59250 [Arabidopsis thalian	0.985	0.987	0.621	1.3e-164
TAIR|locus:2148201	503	AT5G17010 [Arabidopsis thalian	0.788	0.876	0.538	9.4e-114
TAIR|locus:2097780	503	VGT1 "vacuolar glucose transpo	0.872	0.970	0.472	1.2e-106
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.715	0.863	0.330	9.8e-48
UNIPROTKB|F1MIV2	621	SLC2A12 "Solute carrier family	0.527	0.475	0.320	2.4e-38
UNIPROTKB|F1P4J7	561	SLC2A12 "Uncharacterized prote	0.529	0.527	0.305	5.8e-38
UNIPROTKB|Q5J316	621	SLC2A12 "Solute carrier family	0.527	0.475	0.314	8.5e-38
UNIPROTKB|Q8TD20	617	SLC2A12 "Solute carrier family	0.527	0.478	0.314	1.3e-37
MGI|MGI:3052471	622	Slc2a12 "solute carrier family	0.527	0.474	0.320	2.7e-36
UNIPROTKB|F1PA43	614	SLC2A12 "Uncharacterized prote	0.527	0.480	0.308	2.9e-36

TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
 Identities = 352/566 (62%), Positives = 388/566 (68%)

Query:     1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKA-NSNPSSKSLSPFKANNFLSTKPL 56
             MAF  S+   F    L   H   P S ++F   C    S P S  LS  +   F+S   L
Sbjct:     1 MAFAVSVQSHFAIRALKRDHFKNP-SPRTF---CSCFKSRPDSSYLSLKERTCFVSKPGL 56

Query:    57 LAPKFNVKTRKSVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVIXXXXXXXXXXXXX 113
             +  ++  +    VGA+   E++  GE  +S  SDA   E+FSWSSVI             
Sbjct:    57 VTTRY--RHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLF 112

Query:   114 XYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
              YDIGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+
Sbjct:   113 GYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRR 172

Query:   174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
             RELII                                  AMHGAPLYIAETCPSQIRGTL
Sbjct:   173 RELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTL 232

Query:   234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
             ISLKELFIVLGILLG+ VGSFQI+ VGGWRYMYG   P+ALLMG+GM             
Sbjct:   233 ISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLR 292

Query:   294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
             AVQGKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D  +S+K++Y DEKS G+FLEVF
Sbjct:   293 AVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVF 352

Query:   354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMT 413
             QGPNLKA  IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MT
Sbjct:   353 QGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMT 412

Query:   414 WIAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFG 473
             W+AVAKVDDLGRRPLLIGGV                  GFPLVAV ALLLYVGCYQISFG
Sbjct:   413 WVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFG 472

Query:   474 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXX 533
             PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN           
Sbjct:   473 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALV 532

Query:   534 XXXXXXRTVPETKGLSLEEIESKILK 559
                     VPETKGLSLEEIESKILK
Sbjct:   533 SLLFVILVVPETKGLSLEEIESKILK 558

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 239/444 (53%), Positives = 290/444 (65%)

Query:   115 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR 174
             Y+IGATS ATISLQSP LSG +W+NLS+V +GLV SGSLYGAL GSI+ ++IAD +GR++
Sbjct:    63 YEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRK 122

Query:   175 ELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLI 234
             ELI+                                  AMH AP+YIAET PS IRG L+
Sbjct:   123 ELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLV 182

Query:   235 SLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXA 294
             SLKE FIVLG++ GY +GS  +N   GWRYMY  S PLA++MGIGM              
Sbjct:   183 SLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRV 242

Query:   295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 354
             +QGKG+++  +E AI +L  LR     D  +E Q+ + L  L  ++  E  E +F E+FQ
Sbjct:   243 IQGKGNVENQREAAIKSLCCLRGPAFVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQ 299

Query:   355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 414
             G  LKA IIGGGLVLFQQITGQPSVLYYA  ILQ+AGFSAA DATRVS+++G+ KL+MT 
Sbjct:   300 GKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTG 359

Query:   415 IAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGP 474
             +AV  +D LGRRPLL+GGV                    P+VAV ALLLYVGCYQ+SFGP
Sbjct:   360 VAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGP 419

Query:   475 ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXX 534
             I WLM+SEIFPL+ RGRG+SLAVL NFG+NA+VTFAFSPLKELLGA              
Sbjct:   420 IGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLS 479

Query:   535 XXXXXRTVPETKGLSLEEIESKIL 558
                    VPETKGL+LEEIE+K L
Sbjct:   480 LVFIFFIVPETKGLTLEEIEAKCL 503

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 234/495 (47%), Positives = 300/495 (60%)

Query:    68 SVG-AQREYSAGG---EDESRISDATNQEAFSWSSVIXXXXXXXXXXXXXXYDIGATSGA 123
             SVG    + S+GG   E E  + +  + E +S  + I              Y+IGATS A
Sbjct:    12 SVGQVVGDSSSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCA 71

Query:   124 TISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXX 183
              +SL+SP LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+     
Sbjct:    72 IMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLY 131

Query:   184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVL 243
                                           MH AP+YIAET PSQIRG +ISLKE   VL
Sbjct:   132 LVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVL 191

Query:   244 GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQE 303
             G++ GY +GS  I  + GWRYMY    P  ++MG GM             A+QG+G+ + 
Sbjct:   192 GMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGEN 251

Query:   304 YKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 363
              ++ AI +L +LR     D  +E Q+ + L  L  S   E  E +F E+F+G  LKA  I
Sbjct:   252 LQQAAIRSLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTI 308

Query:   364 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423
              GGLVLFQQITGQPSVLYYA  ILQ+AGFSAAADATR+S+++G+ KLVMT ++V  +D +
Sbjct:   309 AGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRV 368

Query:   424 GRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 483
             GRRPLL+ GV                    P VAV+ALLLYVGCYQ+SFGPI WLM+SEI
Sbjct:   369 GRRPLLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEI 428

Query:   484 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVP 543
             FPL+ RGRGISLAVL NFG+NA+VTFAFSPLKELLGA                     VP
Sbjct:   429 FPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIVP 488

Query:   544 ETKGLSLEEIESKIL 558
             ETKGL+LEEIE+K L
Sbjct:   489 ETKGLTLEEIEAKCL 503

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005353 "fructose transmembrane transporter activity" evidence=IDA

GO:0005355 "glucose transmembrane transporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009845 "seed germination" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0015755 "fructose transport" evidence=IDA

GO:0015758 "glucose transport" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 140/424 (33%), Positives = 201/424 (47%)

Query:   138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXX 197
             F+LS    G VVS  L GA LG++    +AD++GRKR LII                   
Sbjct:    49 FHLSPQMNGFVVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSIS 108

Query:   198 XXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
                            A + APLYI+E  P   RG L+SL +L + +GI L Y V  +   
Sbjct:   109 WLVIGRIIVGIAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVV-DYYFA 167

Query:   258 AVGGWRYMYGLSA-PLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLR 316
                 WR M+     P ALL+ +GM              +  +G    ++E+A+  L KLR
Sbjct:   168 RHDAWRSMFAAGVIPAALLL-LGMIVLPYSPRW-----IFSRG----HEEKALWILRKLR 217

Query:   317 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376
                P    +E+++E    SL+    D ++   F ++ + P L    I  GL +FQQ+TG 
Sbjct:   218 GHGPH---AEQELEHIRASLQQQKGDWRT--LFSKIIR-PTL---FIAIGLAVFQQVTGI 268

Query:   377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL---IGGV 433
              +VLYYA  IL+  GF A+  A   ++ IG   +++T I++  +D LGRRPLL   +G +
Sbjct:   269 NTVLYYAPTILKMTGFQASQTAILATMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAM 328

Query:   434 CXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493
                                   +A  +LL+++  + IS GPI WLM SEIFPLR RG G 
Sbjct:   329 TVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGA 388

Query:   494 SLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEI 553
             S+   TN+ SN +VT  F  L E LG                     +VPETKG++LE+I
Sbjct:   389 SIGACTNWASNWLVTITFLTLIEYLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQI 448

Query:   554 ESKI 557
             E  +
Sbjct:   449 EENL 452

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
 Identities = 103/321 (32%), Positives = 146/321 (45%)

Query:   119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
             A SG  +  +   +SG      T   L+  +  +VVS  L GALL S++   + D  GR+
Sbjct:    52 AVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRR 111

Query:   174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
               +I+                                  +     +YIAE  P   RG L
Sbjct:   112 AAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLL 171

Query:   234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
             +SL EL IV+GIL  Y       N   GW+YM+GL  PL +L  I M             
Sbjct:   172 VSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230

Query:   294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
                 KG    ++E A   LGKLR       +S+   E T++  KSS  DE  + SF ++F
Sbjct:   231 ----KG----HEEAASKVLGKLRA------ISDTTEELTVI--KSSLKDEY-QYSFWDLF 273

Query:   354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
             +   N++  I IG  LV F QITGQP++L+YA  +L+S GF +   A+  S  +GV K++
Sbjct:   274 RSKDNMRTRIMIGLMLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 333

Query:   412 MTWIAVAKVDDLGRRPLL-IG 431
              T  A   VD +G +  L IG
Sbjct:   334 STIPATLLVDQVGSKTFLCIG 354

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
 Identities = 99/324 (30%), Positives = 145/324 (44%)

Query:   117 IGATSGATISLQSPELSG-----TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 171
             I A SG  +  +   +SG     ++   LS  +  +VVS  L+GAL  S+    + D  G
Sbjct:    16 IAAVSGLLMGYELGLISGALLQMSSILALSCKEQEIVVSSLLFGALFASLTGGFLIDRFG 75

Query:   172 RKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRG 231
             R+  +II                                  +     +YIAE  P   RG
Sbjct:    76 RRFAIIIASSLLVMGSLILLPHESYGILIVGRIAIGISISLSSIATCVYIAEIAPQHRRG 135

Query:   232 TLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMXXXXXXXXXX 290
              L+SL EL IV+GIL  Y + ++   +V  GW+YM+GL  PL  L  I M          
Sbjct:   136 LLVSLNELMIVIGILFAY-ISNYAFASVSHGWKYMFGLVIPLGALQAIAMYFLPPSPRFL 194

Query:   291 XXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 350
                       ++   E A   L +LR     D   E      L  +KSS  DE  + SF+
Sbjct:   195 V---------MKNNDEAARKILERLRET--SDATKE------LTVIKSSLKDEH-QYSFV 236

Query:   351 EVFQGPN-LKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVF 408
             ++F+  N ++A  ++G  LV F Q TGQP++L+YA  +L+S GF +   A+  S  +GV 
Sbjct:   237 DLFRSKNNMRARMLVGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVV 296

Query:   409 KLVMTWIAVAKVDDLGRRPLL-IG 431
             K+V T  A   VD +G +  L IG
Sbjct:   297 KVVSTVPATVFVDKVGSKTFLCIG 320

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 8.5e-38, Sum P(2) = 8.5e-38
 Identities = 101/321 (31%), Positives = 143/321 (44%)

Query:   119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
             A SG  +  +   +SG      T   L+  +  +VVS  L GALL S++   + D  GR+
Sbjct:    52 AVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRR 111

Query:   174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
               +I+                                  +     +YIAE  P   RG L
Sbjct:   112 AAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLL 171

Query:   234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
             +SL EL IV+GIL  Y       N   GW+YM+GL  PL +L  I M             
Sbjct:   172 VSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230

Query:   294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
                 KG    ++E A   LGKLR        +     + L  +KSS  DE  + SF ++F
Sbjct:   231 ----KG----HEEAASKVLGKLR--------AVLDTTEELTVIKSSLKDEY-QYSFWDLF 273

Query:   354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
             +   N++  I IG  LV F QITGQP++L+YA  +L+S GF +   A+  S  +GV K++
Sbjct:   274 RSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 333

Query:   412 MTWIAVAKVDDLGRRPLL-IG 431
              T  A   VD +G +  L IG
Sbjct:   334 STIPATLLVDQVGSKTFLCIG 354

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 101/321 (31%), Positives = 142/321 (44%)

Query:   119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
             A SG  +  +   +SG      T   LS  +  +VVS  + GALL S+    + D  GR+
Sbjct:    48 AVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRR 107

Query:   174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
               +I+                                  +     +YIAE  P   RG L
Sbjct:   108 TAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLL 167

Query:   234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
             +SL EL IV+GIL  Y       N   GW+YM+GL  PL +L  I M             
Sbjct:   168 VSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMK 227

Query:   294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
               +G  S           LG+LR       LS+   E T++  KSS  DE  + SF ++F
Sbjct:   228 GQEGAAS---------KVLGRLRA------LSDTTEELTVI--KSSLKDEY-QYSFWDLF 269

Query:   354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
             +   N++  I IG  LV F QITGQP++L+YA  +L+S GF +   A+  S  +GV K++
Sbjct:   270 RSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 329

Query:   412 MTWIAVAKVDDLGRRPLL-IG 431
              T  A   VD +G +  L IG
Sbjct:   330 STIPATLLVDHVGSKTFLCIG 350

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)]

 Score = 289 (106.8 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 103/321 (32%), Positives = 141/321 (43%)

Query:   119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
             A SG  +  +   +SG      T   L+  +  +VVS  L GA L S+    + D  GR+
Sbjct:    52 AISGLLVGYELGLISGALLQIRTLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRR 111

Query:   174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
               +I+                                  +     +YIAE  P   RG L
Sbjct:   112 LAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLL 171

Query:   234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
             +SL EL IV GIL  Y       N   GW+YM+GL  PL +L  I M             
Sbjct:   172 VSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230

Query:   294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
                 KG  QE  E A   L KLR       +S+   E TL+  KSS  DE  + SF ++F
Sbjct:   231 ----KG--QE--ESAGKVLRKLR------VISDTTEELTLI--KSSLKDEY-QYSFWDLF 273

Query:   354 QGP-NLKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
             +   N++   +IG  LV F Q TGQP++L+YA  +L+S GF +   A+  S  +GV K+V
Sbjct:   274 RSKDNMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVV 333

Query:   412 MTWIAVAKVDDLGRRPLL-IG 431
              T  A   VD +G +  L IG
Sbjct:   334 STIPATLLVDHIGSKTFLCIG 354

GO:0003674 "molecular_function" evidence=ND

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015758 "glucose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1PA43 SLC2A12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
 Identities = 99/321 (30%), Positives = 142/321 (44%)

Query:   119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
             A SG  +  +   +SG      T   L+  +  +VVS  L GALL S+    + D  GR+
Sbjct:    48 AVSGLLVGYELGLISGALLQLRTLLALTCHEQEMVVSSLLIGALLASLTGGVLIDRYGRR 107

Query:   174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
               +I+                                  +     +YIAE  P   RG L
Sbjct:   108 AAIILSSCLLGLGSLILILSLSYEVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLL 167

Query:   234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
             +SL EL IV+GIL  Y       N   GW+YM+GL  P  +L  I M             
Sbjct:   168 VSLNELMIVIGILFAYISNYAFANVSHGWKYMFGLVIPFGVLQAIAMYFLPPSPRFLVM- 226

Query:   294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
                 KG    ++E A   L +LR       +S+   E  L  +KSS  DE  + SF ++F
Sbjct:   227 ----KG----HEEAASKVLRRLRA------ISDTTEE--LTGIKSSLKDEY-QYSFWDLF 269

Query:   354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
             +   N++  I IG  LV F Q+TGQP++L+YA  +L+S GF +   A+  S  +GV K++
Sbjct:   270 RSKDNMRTRIMIGLTLVFFVQVTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 329

Query:   412 MTWIAVAKVDDLGRRPLL-IG 431
              T  A   VD +G +  L IG
Sbjct:   330 STIPATLLVDHVGSKTFLCIG 350

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WWW9	XYLL3_ARATH	No assigned EC number	0.7460	0.9910	0.9928	yes	no
P0AEP2	GALP_ECOL6	No assigned EC number	0.3256	0.8014	0.9655	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_802528.1 annotation not avaliable (559 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	559
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	9e-87
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	6e-83
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-72
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	9e-23
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-20
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-16
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-13
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	3e-13
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-11
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	1e-09
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-08
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-08
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-08
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	9e-08
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	2e-05
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	1e-04
PRK15075	434	PRK15075, PRK15075, citrate-proton symporter; Prov	6e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	8e-04
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	0.002
PRK10213	394	PRK10213, nepI, ribonucleoside transporter; Review	0.003
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  275 bits (706), Expect = 9e-87
 Identities = 163/464 (35%), Positives = 257/464 (55%), Gaps = 33/464 (7%)

Query: 104 LFPALGGLLFGYDIGATSGATISLQSPE-----LSGTTWFNLSAVQLGLVVSGSLYGALL 158
           L  ALGG LFGYD G   GA ++L         L+       S V  GL+VS    G L+
Sbjct: 3   LVAALGGFLFGYDTG-VIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 159 GSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLAMHG 216
           GS+    + D  GRK+ L+I  VL+ +GAL   +A G    +L+VGR++ GLG+G     
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYGLSAPLAL 274
            P+YI+E  P ++RG L SL +L I  GIL+   +G    + +   GWR   GL    A+
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334
           L+ IG+  LP SPRWL+L+            E+A + L KL R         ++ +D+L 
Sbjct: 182 LLLIGLLFLPESPRWLVLKGK---------LEEARAVLAKL-RGVSDVDQEIQEEKDSLE 231

Query: 335 SLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS 393
                 + E  + S+LE+F+G  ++   ++G  L +FQQ+TG  ++ YY+  I ++ G S
Sbjct: 232 -----RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS 286

Query: 394 AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 453
              D+  V++++GV   V T+IA+  VD  GRRPLL+ G  G+A+  L+L      +   
Sbjct: 287 ---DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKS 343

Query: 454 P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 510
               +VA+  +LL++  + + +GP+ W++VSE+FPL  R + +++A   N+ +N ++ F 
Sbjct: 344 KGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFL 403

Query: 511 FSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 554
           F  +   +G   +FL+FA +  L +LF+   VPETKG +LEEI+
Sbjct: 404 FPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  266 bits (682), Expect = 6e-83
 Identities = 162/466 (34%), Positives = 252/466 (54%), Gaps = 31/466 (6%)

Query: 104 LFPALGGLLFGYDIGATSGATISLQSP-ELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
           L  A+GGL+FGYD G   GA        + +     + S+   GLVVS  L G  +G++ 
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPL 219
              ++D  GRK+ L+I A+L+ +GA+    A     + +L+VGR+L G+G+G+A    P+
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 220 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGS--FQINAVGGWRYMYGLSAPLALLMG 277
           Y++E  P  +RG L SL +L I  GIL+ Y  GS    +N   GWR   GL    A L+ 
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210

Query: 278 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK 337
           +G++ LP SPRWL+    +G+       E+A  +L +LR    G    ++++ D L  + 
Sbjct: 211 LGLFFLPESPRWLVG---KGR------VEEARKSLARLR----GTSGEDKELLDELELID 257

Query: 338 SSYTDEK-----SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 392
              + EK     S GS     +    + F+ G  L  FQQ TG  +++YY+  I ++AG 
Sbjct: 258 IKRSIEKRSVQPSWGSLFSSTRRIRRRLFL-GVVLQWFQQFTGINAIMYYSPTIFENAGV 316

Query: 393 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 452
           S    A  VS+++G      T++A+  VD  GRRPLL+ G  G+A+ L +L         
Sbjct: 317 STD-HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT 375

Query: 453 FPL-----VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507
                   VA+  +LL++  + + +GP+ W++VSEIFPL  R +GIS+AV  N+ +N IV
Sbjct: 376 GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV 435

Query: 508 TFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 553
            F F  + E +G   +F+ F  +  L ++F+   +PETKG +LEEI
Sbjct: 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  239 bits (611), Expect = 1e-72
 Identities = 156/482 (32%), Positives = 250/482 (51%), Gaps = 56/482 (11%)

Query: 104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTW-FNLSAVQLGLVVSGSLYGALLGSIL 162
           L   LGGLLFGYD    SG   SL +  ++      + +   LG  V+ +L G ++G  L
Sbjct: 15  LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74

Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVG-------------RLLYGLG 209
               ++  GR+  L IAAVL+ + AL +A+ P  G   +G             R++ G+G
Sbjct: 75  GGYCSNRFGRRDSLKIAAVLFFISALGSAW-PEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 262
           +GLA   +P+YIAE  P+ IRG L+S  +  I+ G L+ YFV  F   +         GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193

Query: 263 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 322
           RYM+   A  ALL  + ++ +P +PR+L+ R  Q         EQA   L K+     G+
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ---------EQAEGILRKIM----GN 240

Query: 323 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 382
            L+ + +++    +K S    +  G  L +F    +   +IG  L +FQQ  G   VLYY
Sbjct: 241 TLATQALQE----IKHSLDHGRKTGGKLLMF---GVGVIVIGVMLSVFQQFVGINVVLYY 293

Query: 383 AGPILQSAGFSAAADATRV-SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 441
           A  I ++ G  A+ D   + ++++GV  L  T +A+  VD  GR+PL I G  G+A+ + 
Sbjct: 294 APEIFKTLG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 351

Query: 442 LLS--AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499
            L    Y +  G   +VA+ ++L YV  + +S+GP+ W+++SEIFP   RG+ +++AV  
Sbjct: 352 SLGTAFYTQAPG---IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408

Query: 500 NFGSNAIVTFAFSPLKELLGAENIF------LLFAAIAFLAVLFIVRTVPETKGLSLEEI 553
            + +N  V++ F  + +       F       ++  +  LA LF+ + VPETKG +LEE+
Sbjct: 409 QWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468

Query: 554 ES 555
           E+
Sbjct: 469 EA 470

Length = 479

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  101 bits (253), Expect = 9e-23
 Identities = 119/473 (25%), Positives = 199/473 (42%), Gaps = 79/473 (16%)

Query: 111 LLFGYDIGATSGATISLQSPELSGTTW------------FNL---SAVQLGLVVSGSLYG 155
            L G +    S   ++   P L G  +            ++L    A ++ L  S    G
Sbjct: 80  SLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVG 139

Query: 156 ALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI-GLAM 214
            LLGS +   ++D  GRK+ L+++ ++ A+  + TA++P   V LV RLL G+GI G+ +
Sbjct: 140 VLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV 199

Query: 215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 274
               L   E  P + R  + +L ++F  LG++L   V  F    +  WR++    +    
Sbjct: 200 QAVVLN-TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF----IPDWRWLQLAVSLPTF 254

Query: 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334
           L  +  W +P SPRWL+    QG+       E+A+  L ++ +   G KL     E   +
Sbjct: 255 LFFLLSWFVPESPRWLIS---QGRI------EEALKILQRIAKI-NGKKLP---AEVLSL 301

Query: 335 SLKSSYTDEKSEGSFLEVFQGPNLKA---------FIIG---GGLVLFQQITGQPSVLYY 382
           SL+   +  K + SFL++F+ PNL+          F       GLVL     G       
Sbjct: 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------- 354

Query: 383 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 442
            G I      S   +      +       +T +    +D LGRR  +   +    ++LLL
Sbjct: 355 -GNIYLDLFISGLVE------LPAKL---ITLLL---IDRLGRRYTMAASLLLAGVALLL 401

Query: 443 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNF 501
           L     +      +  +  +L       +F  + +L  +E++P   R  G+ +   +   
Sbjct: 402 L---LFVPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMARV 457

Query: 502 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV--PETKGLSLEE 552
           GS        SP    LG + +FL       LA+L  + T+  PETKG+ L E
Sbjct: 458 GS------IISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 70/190 (36%), Positives = 93/190 (48%), Gaps = 8/190 (4%)

Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
            L   LG  L G D G  S A   L            LSA Q GL+VS    G  LGS+L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLA-------EDLGLSASQAGLIVSAFSLGYALGSLL 53

Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
              ++D  GR+R L++  +L+ALG+L  A+A  L +LLVGR L GLG G     A   IA
Sbjct: 54  AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113

Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
           E  P + RG  + L      LG LLG  +G   +    GWR+++ + A L LL+ + +  
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGL-LAESLGWRWLFLILAILGLLLALLLLF 172

Query: 283 LPPSPRWLLL 292
           L      L L
Sbjct: 173 LLRLLLLLAL 182

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 100/412 (24%), Positives = 158/412 (38%), Gaps = 55/412 (13%)

Query: 97  SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGA 156
                  +   L  L+ GYD+     A +   +P +S    + L  VQLG + S  L G 
Sbjct: 13  RYQWRAIILSFLIMLMDGYDL-----AAMGFAAPAISAE--WGLDPVQLGFLFSAGLIGM 65

Query: 157 LLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216
             G++    +AD +GR+R L+ + +L+++  L  A A  +  LL+ R L GLG+G  M  
Sbjct: 66  AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125

Query: 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY--GLSAPLAL 274
               ++E  P + RGT + L      +G  +G F+  + I  V GWR ++  G  APL L
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLL 184

Query: 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334
           L+ +  + LP S  +L+ +  + +   +     A        +      L E        
Sbjct: 185 LLLLMRF-LPESIDFLVSK--RPETVRRIVNAIAPQM-----QAEAQSALPE-------- 228

Query: 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG---PIL---Q 388
                 T       F  +FQG   +  ++   L     +      +Y+     P L    
Sbjct: 229 ---QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVEL 280

Query: 389 SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448
               S AA    +    GV     + I     D LG R             LLLL A + 
Sbjct: 281 GFSLSLAATGGALFNFGGVIG---SIIFGWLADRLGPRVT---------ALLLLLGAVFA 328

Query: 449 ILGGFPLVAVSALLLYVGCYQI-SFGPISWLMVS--EIFPLRTRGRGISLAV 497
           +L G  L + + LLL          G  S L       +P   R  G+  A+
Sbjct: 329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 80/369 (21%), Positives = 133/369 (36%), Gaps = 51/369 (13%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
             +S  ++GL+++    G  L   L   ++D  GR+R L+I  +L+ALG L   +A  L 
Sbjct: 27  LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86

Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
           +LLV R+L GLG G     A   IA+  P + RG  + L      LG  LG  +G   + 
Sbjct: 87  LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL-LA 145

Query: 258 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 317
           ++ GWR  + + A LALL  +                                    L  
Sbjct: 146 SLFGWRAAFLILAILALLAAV--------------------------------LAALLLP 173

Query: 318 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 377
           RPP +    +  E+    L  ++     +     +                L        
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL--------------ALLLFGFAFF 219

Query: 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 437
           ++L Y     +  G SA      + +   +   +   +     D LGRR  L+  +  + 
Sbjct: 220 ALLTYLPLYQEVLGLSALLAGLLLGLAGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLI 278

Query: 438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 497
           L+ L L+    +      + +   LL +G       P    +VS++ P   RG    L  
Sbjct: 279 LAALGLAL---LSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYN 335

Query: 498 LTNFGSNAI 506
                  A+
Sbjct: 336 TAGSLGGAL 344

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 10/158 (6%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
           F L   Q+G   S  + G L G++L   +AD +GRKR LI++  L+ L +L TA A    
Sbjct: 45  FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104

Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIA---ETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254
            LLV RLL G+G+G A+   P  IA   E    ++RGT +SL    +  G  L   +G  
Sbjct: 105 SLLVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161

Query: 255 QINAVGGWRYMY--GLSAPLALLMGIGMWSLPPSPRWL 290
                  WR+++  G   PL L+  +  W LP S  + 
Sbjct: 162 AAGD-AAWRHIFYVGGVGPLLLVPLLMRW-LPESRAFA 197

Length = 406

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 96/396 (24%), Positives = 150/396 (37%), Gaps = 71/396 (17%)

Query: 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLG 209
           LG+I+     D +GRK+ L+I  ++  +G L     P           +LL+ RL+ G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 262
           +G    GA LY+AE  P   RG   S +++   +G+LL           +G       GW
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 263 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 322
           R  + +SA L L   IG++                                 LRR     
Sbjct: 170 RIPFLVSAVLVL---IGLY---------------------------------LRRN---- 189

Query: 323 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 382
                 +E+T V  K+    +K  G   E     + K F++G GLV+    T      Y 
Sbjct: 190 ------LEETPVFEKAQEKHKKKRGPIAETLTK-HRKPFLLGLGLVIATTTTFYLITTYL 242

Query: 383 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLL 441
              + Q+ G SA   A  V ++  +   +   ++ A  D +GRRP L+I  V    L++ 
Sbjct: 243 PTYLTQTLGLSAN-SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301

Query: 442 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL----AV 497
           LL A   +  G   +    +L       +  GP+   +  E+FP   R  G SL    A 
Sbjct: 302 LLMAL--LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNLAG 358

Query: 498 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 533
               G    +  A   +     A   +L   A+  L
Sbjct: 359 AIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 93/407 (22%), Positives = 156/407 (38%), Gaps = 71/407 (17%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
             +S    G +++    G  LG+ L+  +   L R+R L+    L+ +  L +A AP   
Sbjct: 43  LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA 102

Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
           VLL+ R L GL  G+    A    A   P   RG  ++L    + L  +LG  +G+F + 
Sbjct: 103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF-LG 161

Query: 258 AVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 316
            + GWR  +   A LALL  + +W  LPPS              +       +  L +L 
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLPPS-------------EISGSLPGPLRTLLRLL 208

Query: 317 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376
           RRP                +                          + G   L+      
Sbjct: 209 RRP---------------GVLLGLL----------------ATFLFMTGHFALYT----- 232

Query: 377 PSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 435
                Y  P L+S AGFS +A  + V +  G+   +   +   ++ D G R  LI  +  
Sbjct: 233 -----YIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLL-GGRLADRGPRRALIAALLL 285

Query: 436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 495
           +AL+LL L+      G  P +A++ L L    +  +F P    + + +  L      ++ 
Sbjct: 286 LALALLALT----FTGASPALALALLFL----WGFAFSPALQGLQTRLARLAPDAADLAG 337

Query: 496 AVLT---NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 539
           ++     N G  A+       + + LG      + AA+  LA+L  +
Sbjct: 338 SLNVAAFNLG-IALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383

Length = 394

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 108/464 (23%), Positives = 168/464 (36%), Gaps = 79/464 (17%)

Query: 146 GLVVSGSLYGALLGSILVYSIADFLGRKR----ELIIAAVLYALGALTTAYAPG--LGVL 199
             V   +  G L G +    +AD LGRKR    ELII  +      L+   +P   +  L
Sbjct: 59  AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATL 118

Query: 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-------- 251
              R   G+GIG     + +  +E    + RG +++        GIL G  V        
Sbjct: 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGF 178

Query: 252 --------------GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL---RA 294
                         GS        WR + G  A  ALL      ++P +PR+        
Sbjct: 179 KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238

Query: 295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 354
            Q    +    +  I A          D++ E+      V   S          F   F+
Sbjct: 239 EQAASDMSAVLQVKIEA--------EPDEV-EKASTAVEVPKASWS------DFFTHFFK 283

Query: 355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT---RVSVVIGVFKLV 411
             + K  ++G     F        V      IL + G+S  A             V  L+
Sbjct: 284 WRHGKH-LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI 342

Query: 412 MT--------WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLL 463
           +         W+ V  VD +GR+P+ + G   + +   +L   Y  L     +A+  L  
Sbjct: 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ 402

Query: 464 YVGCYQISFGP--ISWLMVSEIFPLRTRG--RGISLAVLTNFGSNAIVTFAFSPLKE--- 516
           +      +FGP   ++++  E+FP R R    GIS A     G+  I  F F  L +   
Sbjct: 403 FFA----NFGPNATTFIVPGEVFPTRYRSTAHGIS-AASGKAGA-IIGQFGFLYLAQHGD 456

Query: 517 -------LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 553
                   +   ++  +FA   FL +LF +  +PETKG SLEE+
Sbjct: 457 PTKGYPTGIWMGHVLEIFALFMFLGILFTL-LIPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 5/179 (2%)

Query: 362 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 421
           ++   L  F    G   +L Y    LQ     +AA+A  +  + G+  ++   +     D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236

Query: 422 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS 481
            LGRR LL+     +A   LLL A    L    +  +         +     P    + S
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-----PALLTLAS 291

Query: 482 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 540
           E+ P   RG    L         A+       L +  G   +FL+ AA+A LA L ++ 
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 113 FGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR 172
            G+ + A     ++L   E++G   F L+ V    ++S +L     G+++     D  GR
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGE--FGLTTVDAASLISAALISRWFGALMFGLWGDRYGR 76

Query: 173 KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT 232
           +  ++ + VL++ G L   +APG   + + RL+ G+G+G     +  Y+ E+ P  +R  
Sbjct: 77  RLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK 136

Query: 233 LISLKELFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGMWSLPPSP 287
                   ++ G  +G  V +   + V      GWR ++ +S    +       ++P + 
Sbjct: 137 ASG----LLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192

Query: 288 RW 289
            W
Sbjct: 193 DW 194

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 146 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 205
           GL+++G   G L+ S L   + D  GRK  L++   ++ L     A +  + VL++ R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 206 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265
            G G   A+      IA+  P + RG  + L    I LG LLG  +G   +    GWR  
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV-LAQFLGWRAP 119

Query: 266 YGLSAPLALLMGIGMWSLPP 285
           +   A LAL   I +  L P
Sbjct: 120 FLFLAILALAAFILLAFLLP 139

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 99  VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALL 158
           ++L FL   L  L   + + +     +    P         LSA + GL++S    G +L
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSAAEAGLLLSLFGLGGIL 226

Query: 159 GSILVYSIADFLGRKRE-LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217
           G++L   ++D LGR+R  L+I  +L ALG L  A AP L +LLV  LL G G+G A    
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 277
               +E  P + RGT   L   F  LG  LG  +    +   GG+  ++ + A LALL  
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL-LLDTGGYGGVFLILAALALLAA 345

Query: 278 IGMWSLP 284
           + +  LP
Sbjct: 346 LLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 16/163 (9%)

Query: 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 167
           LG LL G+D        I+L   E+ G   F L+ VQ   ++S +      G +L+ ++ 
Sbjct: 27  LGYLLDGFDF-----VLITLVLTEVQGE--FGLTTVQAASLISAAFISRWFGGLLLGAMG 79

Query: 168 DFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPS 227
           D  GR+  ++I+ VL+++G L   +APG   L + RL+ G+G+      +  Y+ E+ P 
Sbjct: 80  DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK 139

Query: 228 QIR----GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 266
            +R    G LIS       +G ++   V S  +  V GWR ++
Sbjct: 140 HLRNKASGFLIS----GFSIGAVVAAQVYSL-VVPVWGWRALF 177

Length = 496

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 123 ATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182
           A +S  +P L       LSA Q G V S   +G ++G      + D  G ++ L +  V+
Sbjct: 11  ANLSFAAPMLQ--EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVI 68

Query: 183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIV 242
           + +     A+A     L + R+L G        G  L +A   P+  R T +S+      
Sbjct: 69  WGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG 128

Query: 243 LG-ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 278
           LG I+ G  VG   I+    W++ + +   L ++ G+
Sbjct: 129 LGGIIGGPLVGWILIHF--SWQWAFIIEGVLGIIWGV 163

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 54.6 bits (131), Expect = 9e-08
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 22/171 (12%)

Query: 133 SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 192
           SG        V LG++V    +G L         AD LGRK+ L+I   +    A  +++
Sbjct: 202 SGKGMLG-LIVYLGMMVGAFFWGGL---------ADKLGRKQCLLICLSVNGFFAFFSSF 251

Query: 193 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-------- 244
             G G  L  RLL G GIG A+     Y AE    + RG  +S   +F ++G        
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311

Query: 245 -ILLGYFVGSFQINAV---GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 291
             ++ ++  SFQ+ +      WR    + A   +     +  +P SPR+ L
Sbjct: 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 108/420 (25%), Positives = 169/420 (40%), Gaps = 92/420 (21%)

Query: 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLG 209
           +G  L   IAD  GRK+ ++I+  +   G+L  A  PG           LL+ RL  GL 
Sbjct: 78  IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137

Query: 210 IGLAMHGAPLYIAETCPSQIRG--------TLISLKELFIVLGILLGYFVGSFQINAVGG 261
           +G     +  Y++E      +G        TLI  + L +++ ++L   +   ++    G
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE-WG 196

Query: 262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 321
           WR  + L A LA++              L LR       L E  +Q   AL     +  G
Sbjct: 197 WRIPFALGAVLAVVA-------------LWLRR-----QLDETSQQETRAL-----KEAG 233

Query: 322 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLY 381
                        SLK  + + ++   F+ V        F   G L  +   T      Y
Sbjct: 234 -------------SLKGLWRNRRA---FIMVL------GFTAAGSLCFYTFTT------Y 265

Query: 382 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVCGIALSL 440
               ++ +AG  A   +  ++  + VF L+   I  A  D +GRR  +L  G      ++
Sbjct: 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSLAALFTV 324

Query: 441 LLLSAYYKI---LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP--LRTRGRGISL 495
            +LSA   +      F LV  +  LL V  Y      IS ++ +E+FP  +R  G G+S 
Sbjct: 325 PILSALQNVSSPYAAFGLVMCA--LLIVSFYT----SISGILKAEMFPAQVRALGVGLSY 378

Query: 496 AVLTN-FGSNAIVTFAFSPLKELLGAENIFL----LFAAIAFLAVLFIVRTVPETKGLSL 550
           AV    FG +A   +    LK  +G E  F     L A +AFL  L + R   + KG+ L
Sbjct: 379 AVANALFGGSA--EYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLMLHR---KGKGMRL 432

Length = 432

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL- 196
           F+L+  +  L+      G  + S+    +   LG K  +++  +LYA+GA     A    
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 197 --GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254
             G  LV   +   GIGL    A  Y+      +     ++L + F  LG +LG  +GS 
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162

Query: 255 QI 256
            I
Sbjct: 163 LI 164

Length = 422

>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 17/122 (13%)

Query: 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG---LGVL-----LVGRLLYGLG 209
           LG+I++ +  D +GR++ LI+   + A G L  A+ PG   +G+      L+GRLL G  
Sbjct: 71  LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130

Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISL----KELFIVLGILLGYFVGSF----QINAVGG 261
            G+ + G  +Y+AE      +G   S     +++ +V   LLGY +  +    Q+    G
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE-WG 189

Query: 262 WR 263
           WR
Sbjct: 190 WR 191

Length = 434

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 4/180 (2%)

Query: 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 199
           L+ ++   + + +  G   G  L   +AD  GRK  ++ + V Y++G   +  A G+ +L
Sbjct: 50  LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109

Query: 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS-LKELFIVLGILLGYFVGSFQINA 258
            + R + G+G+      A  Y  E+ P  ++    + L   F +  I+  YF+ SF    
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA--E 167

Query: 259 VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR-AVQGKGSLQEYKEQAISALGKLRR 317
             GWR  + +     LL+       P S  W   + + +GK S   +   ++S  G   R
Sbjct: 168 AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227

Length = 426

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
           F  S    GL++S   YG ++  I V  +A     K  + I   L ++ ++   +A G G
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 198 VLLV--GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255
           + LV   R++ GL  G         I +  P + R  L+ +       G  LG F+    
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM----STSGFQLGTFI---- 182

Query: 256 INAVGGWRYMYGLSAP 271
              + GW        P
Sbjct: 183 FLPISGWLCESWGGWP 198

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 146 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 205
           G  V+ + + A+  S+ +        R+  +I+ AVL  L  L  ++A    +LL+GR  
Sbjct: 58  GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117

Query: 206 YGLGIG--------LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
            GL +G        L M   P        S I G +     + +V+   LG F+G     
Sbjct: 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV----SIALVIAAPLGSFLG----- 168

Query: 258 AVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 287
            + GWR ++  +A + +L    +  SLP  P
Sbjct: 169 ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 6/173 (3%)

Query: 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 437
            +L  A P+L      +A+ A  +     +   + + +A    D  GRR +L+ G+   A
Sbjct: 16  GLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFA 75

Query: 438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 497
           L  LLL+          L+ V   L  +G    +  P +  +++E FP + RGR + L  
Sbjct: 76  LGSLLLAF----ASSLWLLLVGRFL--LGLGGGALYPAAAALIAEWFPPKERGRALGLFS 129

Query: 498 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 550
                   +       L E LG   +FL+ A +  L  L ++  +     L+L
Sbjct: 130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	559
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK12382	392	putative transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
PRK11010	491	ampG muropeptide transporter; Validated	99.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.98
PRK10054	395	putative transporter; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PTZ00207	591	hypothetical protein; Provisional	99.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.92
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
PRK09669	444	putative symporter YagG; Provisional	99.89
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.89
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.87
PRK10429	473	melibiose:sodium symporter; Provisional	99.86
KOG2563	480	consensus Permease of the major facilitator superf	99.86
PF13347	428	MFS_2: MFS/sugar transport protein	99.86
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.84
PRK09848	448	glucuronide transporter; Provisional	99.84
PRK11462	460	putative transporter; Provisional	99.84
COG2211	467	MelB Na+/melibiose symporter and related transport	99.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.79
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.78
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.77
KOG3626	735	consensus Organic anion transporter [Secondary met	99.75
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.68
PRK10642	490	proline/glycine betaine transporter; Provisional	99.67
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.62
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.51
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.48
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.46
PRK03545	390	putative arabinose transporter; Provisional	99.45
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.45
PRK05122	399	major facilitator superfamily transporter; Provisi	99.45
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.45
TIGR00895	398	2A0115 benzoate transport.	99.44
PRK11663	434	regulatory protein UhpC; Provisional	99.44
PRK10054	395	putative transporter; Provisional	99.43
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.42
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.42
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.42
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.41
PRK12382	392	putative transporter; Provisional	99.4
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.4
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.4
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.39
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.39
PRK10489	417	enterobactin exporter EntS; Provisional	99.39
TIGR00893	399	2A0114 d-galactonate transporter.	99.39
PRK10091	382	MFS transport protein AraJ; Provisional	99.38
PRK09874	408	drug efflux system protein MdtG; Provisional	99.38
PRK10504	471	putative transporter; Provisional	99.37
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.37
TIGR00891	405	2A0112 putative sialic acid transporter.	99.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.36
TIGR00900	365	2A0121 H+ Antiporter protein.	99.36
PRK03699	394	putative transporter; Provisional	99.36
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.36
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.35
PLN00028	476	nitrate transmembrane transporter; Provisional	99.35
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.35
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.34
PRK03633	381	putative MFS family transporter protein; Provision	99.34
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.33
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.33
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.32
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.32
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.31
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.31
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.31
PRK12307	426	putative sialic acid transporter; Provisional	99.3
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.3
PRK11043	401	putative transporter; Provisional	99.3
PRK03893	496	putative sialic acid transporter; Provisional	99.29
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.29
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.27
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
PRK09952	438	shikimate transporter; Provisional	99.27
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.26
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.26
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.25
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.25
PRK09705	393	cynX putative cyanate transporter; Provisional	99.25
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.24
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.24
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.24
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.22
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.22
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.22
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.2
PRK11010	491	ampG muropeptide transporter; Validated	99.19
KOG3762	618	consensus Predicted transporter [General function	99.19
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.18
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.18
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.17
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.15
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.12
TIGR00898	505	2A0119 cation transport protein.	99.12
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.1
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.09
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.09
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.08
TIGR00805	633	oat sodium-independent organic anion transporter.	99.08
TIGR00901	356	2A0125 AmpG-related permease.	99.08
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.07
PTZ00207	591	hypothetical protein; Provisional	99.06
PRK15075	434	citrate-proton symporter; Provisional	99.05
PRK10133	438	L-fucose transporter; Provisional	99.05
PRK11902	402	ampG muropeptide transporter; Reviewed	99.05
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.02
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.02
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.01
PRK09848	448	glucuronide transporter; Provisional	99.0
KOG2615	451	consensus Permease of the major facilitator superf	98.98
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.98
KOG0569	485	consensus Permease of the major facilitator superf	98.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.96
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.95
KOG0637	498	consensus Sucrose transporter and related proteins	98.92
KOG2532	466	consensus Permease of the major facilitator superf	98.92
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.91
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.91
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.9
COG0477	338	ProP Permeases of the major facilitator superfamil	98.84
PRK10429	473	melibiose:sodium symporter; Provisional	98.8
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.79
PRK09669	444	putative symporter YagG; Provisional	98.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.79
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.79
PF13347	428	MFS_2: MFS/sugar transport protein	98.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.75
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.74
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.7
KOG3810	433	consensus Micronutrient transporters (folate trans	98.65
COG2211	467	MelB Na+/melibiose symporter and related transport	98.65
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.65
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.64
KOG0254	513	consensus Predicted transporter (major facilitator	98.63
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.61
KOG2533	495	consensus Permease of the major facilitator superf	98.59
KOG3762	618	consensus Predicted transporter [General function	98.53
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.48
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.42
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.41
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.37
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.31
PRK11462	460	putative transporter; Provisional	98.3
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.24
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.18
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.17
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.17
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.13
COG3202	509	ATP/ADP translocase [Energy production and convers	98.07
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.02
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	98.0
PF12832	77	MFS_1_like: MFS_1 like family	97.89
PF12832	77	MFS_1_like: MFS_1 like family	97.73
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.54
KOG2563	480	consensus Permease of the major facilitator superf	97.54
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.46
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.43
PRK03612	521	spermidine synthase; Provisional	97.36
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.28
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.16
KOG3626	735	consensus Organic anion transporter [Secondary met	97.07
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.07
KOG3880	409	consensus Predicted small molecule transporter inv	96.97
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.81
COG0477	338	ProP Permeases of the major facilitator superfamil	96.71
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.51
PRK03612	521	spermidine synthase; Provisional	96.42
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.38
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.07
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.97
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.82
KOG0637	498	consensus Sucrose transporter and related proteins	95.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.19
KOG3097	390	consensus Predicted membrane protein [Function unk	94.98
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.45
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.14
COG4262	508	Predicted spermidine synthase with an N-terminal m	92.99
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.05
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.42
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.21
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	90.09
COG3202	509	ATP/ADP translocase [Energy production and convers	90.06
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	88.75
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	84.41
KOG3880	409	consensus Predicted small molecule transporter inv	84.23
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	82.07

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-44  Score=342.44  Aligned_cols=447  Identities=31%  Similarity=0.542  Sum_probs=373.4

Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccC---CCCCCccccc--cchh----HHHHHHHHHHHHHHHHHHHHHHhh
Q 008615           97 SSVILPFLFPALGGLLFGYDIGATSGATISLQS---PELSGTTWFN--LSAV----QLGLVVSGSLYGALLGSILVYSIA  167 (559)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~s~~----~~g~~~s~~~l~~~i~~~~~g~l~  167 (559)
                      ++...+.+.++++.+-+||..+.+++....+..   +...+.  +|  +++.    ..+.+.+++.+|.++|+++.|+++
T Consensus         7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r--~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la   84 (485)
T KOG0569|consen    7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIER--YGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA   84 (485)
T ss_pred             HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566667779999999998887554432   111111  33  3433    357889999999999999999999


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHh---chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHH
Q 008615          168 DFLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG  244 (559)
Q Consensus       168 dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  244 (559)
                      ||+|||..++++.++..++.++..+   .+++.+++++|++.|+..|......+.++.|..|.+.||......+.+..+|
T Consensus        85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g  164 (485)
T KOG0569|consen   85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG  164 (485)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence            9999999999998888887777766   4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhc-ccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCc
Q 008615          245 ILLGYFVGSF-QINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK  323 (559)
Q Consensus       245 ~~~g~~l~~~-l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (559)
                      ..++..++.. +......|++.+.+..+++++..+...++||||+|+..+        +++.++|++.++++++..+.++
T Consensus       165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~--------k~~~~~A~~sl~~y~G~~~~~~  236 (485)
T KOG0569|consen  165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK--------KGDEEEARKALKFYRGKEDVEA  236 (485)
T ss_pred             HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--------cCCHHHHHHHHHHHhCCCcchh
Confidence            9999777643 343444899999999999999999999999999999985        5789999999999999876555


Q ss_pred             hhhHHHHHHHHHhhhccccccccccchhhcccCchh-HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHH
Q 008615          324 LSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS  402 (559)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (559)
                      ..+...++..    ++...+++..+++++++++..+ ...++..+....++.+.+...+|...++.+.|++. ..+.+..
T Consensus       237 ~~e~~~~e~~----~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~-~~a~~an  311 (485)
T KOG0569|consen  237 EIEEMLREIE----EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTP-EEAQYAN  311 (485)
T ss_pred             HHHHHHHHHH----HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCH-HHHHHHH
Confidence            4433333222    2222334667899999998766 46666778888999999999999999999999998 8899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCc-h---hHHHHHHHHHHHHhhcccccccce
Q 008615          403 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-P---LVAVSALLLYVGCYQISFGPISWL  478 (559)
Q Consensus       403 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~  478 (559)
                      ...++..++..+++.++.||+|||++++.+..++.+..+++.......... .   +..+...+++...++.+.+|+.+-
T Consensus       312 ~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~f  391 (485)
T KOG0569|consen  312 LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWF  391 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence            999999999999999999999999999999999988888777655443332 2   234566777888899999999999


Q ss_pred             eecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHhhhh
Q 008615          479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL  558 (559)
Q Consensus       479 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (559)
                      +.+|++|++.|+.++++..+++++..++....+..+.+..|. ..|+.+.+.+++..++.++++||||+|+..|+.++++
T Consensus       392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999997 8888999999999999999999999999999888766


Q ss_pred             C
Q 008615          559 K  559 (559)
Q Consensus       559 ~  559 (559)
                      |
T Consensus       471 ~  471 (485)
T KOG0569|consen  471 K  471 (485)
T ss_pred             h
Confidence            4

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7.2e-43  Score=358.77  Aligned_cols=426  Identities=19%  Similarity=0.202  Sum_probs=318.3

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH
Q 008615           99 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII  178 (559)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~  178 (559)
                      .+.++++++++.+..+++...++..+|.+..+       ++++..+.+++.+++.++++++++++|+++||+|||+++++
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii  237 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI  237 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34455666777788899888888888888766       99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          179 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       179 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      +++++++++++++++++++.++++|+++|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+...
T Consensus       238 ~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~  317 (742)
T TIGR01299       238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH  317 (742)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877655432


Q ss_pred             C------------CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCc-hh
Q 008615          259 V------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK-LS  325 (559)
Q Consensus       259 ~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  325 (559)
                      .            .+||+.+++.++++++.+++.+++||+|+|+..+         ++.+++.+.++++...+.... .+
T Consensus       318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~---------gr~~eA~~iL~~i~~~n~~~~~~~  388 (742)
T TIGR01299       318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLEN---------GKHDEAWMILKLIHDTNMRAKGHP  388 (742)
T ss_pred             ccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHC---------CCHHHHHHHHHHHhcCCCCCcCch
Confidence            1            2799999999988888887888899999999874         567888888888876553321 11


Q ss_pred             hHHH--HHHHH--Hhh---hcccccc----------------ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHh
Q 008615          326 ERQI--EDTLV--SLK---SSYTDEK----------------SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY  382 (559)
Q Consensus       326 ~~~~--~~~~~--~~~---~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (559)
                      ....  .....  ...   +......                .+.+++++|+.+..+.. +...+.++....+++++..|
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~t-l~l~~~wf~~~~~yygl~~w  467 (742)
T TIGR01299       389 EKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREIT-IKLMGVWFTLSFGYYGLSVW  467 (742)
T ss_pred             hHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            1110  00000  000   0000000                01135566665544444 44445556666677889999


Q ss_pred             HHHHHHHc------------------------------------------CC-----C---------------C------
Q 008615          383 AGPILQSA------------------------------------------GF-----S---------------A------  394 (559)
Q Consensus       383 ~~~~~~~~------------------------------------------~~-----~---------------~------  394 (559)
                      .|.++.+.                                          |+     .               .      
T Consensus       468 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (742)
T TIGR01299       468 FPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFK  547 (742)
T ss_pred             HHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhh
Confidence            99876441                                          00     0               0      


Q ss_pred             ----------------------------------------------chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Q 008615          395 ----------------------------------------------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL  428 (559)
Q Consensus       395 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  428 (559)
                                                                    .........+..++.+++.+++|+++||+|||++
T Consensus       548 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~  627 (742)
T TIGR01299       548 NCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM  627 (742)
T ss_pred             ccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence                                                          0012344566778899999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 008615          429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT  508 (559)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~  508 (559)
                      +.++.++.+++++++.+.     ......++..+++. ++..+..+....+++|++|++.|++++|+.+....+|++++|
T Consensus       628 l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~l~g-~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp  701 (742)
T TIGR01299       628 LAGSMVLSCISCFFLSFG-----NSESAMIALLCLFG-GLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGI  701 (742)
T ss_pred             HHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888887776642     12222333333333 333334456668899999999999999999999999999999


Q ss_pred             HhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008615          509 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLS  549 (559)
Q Consensus       509 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (559)
                      ++.+.+.+. +...+|++++++.++++++.+ ++||++++.
T Consensus       702 ~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       702 LIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence            999988775 455677777777777666544 568988764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.5e-41  Score=345.61  Aligned_cols=435  Identities=23%  Similarity=0.291  Sum_probs=309.3

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 008615          101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~  180 (559)
                      .++.+++++.+.++|+...++...+.+..+....+  .+.+..+.+++.+.+.+++.++++++|+++||+|||+++.+++
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGK--GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            34566777889999999998888887654322122  4567778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchh------HhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhc
Q 008615          181 VLYALGALTTAYAPG------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF  254 (559)
Q Consensus       181 ~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  254 (559)
                      +++.++.++++++++      ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++.++..
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998765      78999999999999999999999999999999999999999999999999999988765


Q ss_pred             ccC----------------------CCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHH
Q 008615          255 QIN----------------------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISAL  312 (559)
Q Consensus       255 l~~----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~  312 (559)
                      +..                      ...+||+.|.+.++++++.++..+++||||+|+..|++        +++++++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~--------~~~~a~~~~  245 (502)
T TIGR00887       174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK--------DVEQAASDM  245 (502)
T ss_pred             HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCc--------chHHHHHHH
Confidence            421                      01279999999988888887778889999999987521        122344444


Q ss_pred             HhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC---chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 008615          313 GKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS  389 (559)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (559)
                      ++..+.+..+..+  +.++    .+++  ++..+.+++++++++   +.++..+.....++.....++....|.|.++++
T Consensus       246 ~~~~~~~~~~~~~--~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~  317 (502)
T TIGR00887       246 SAVLQVKIEAEPD--EVEK----ASTA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA  317 (502)
T ss_pred             HHHhccccccCcc--cccc----hhcc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH
Confidence            4443322111100  0000    0000  011123466777642   222233322233333322334566678888888


Q ss_pred             cCCCCchh-----------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          390 AGFSAAAD-----------ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       390 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      .|++....           .........++.+++.++.++++||+|||++++.+..+.++++.++....... . .....
T Consensus       318 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~-~~~~~  395 (502)
T TIGR00887       318 IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-S-THGFL  395 (502)
T ss_pred             HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-c-hhHHH
Confidence            88764211           01123334456677889999999999999999888877777766665432110 1 11112


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh----------cCchhhHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL----------LGAENIFLLFA  528 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~----------~g~~~~~~~~~  528 (559)
                      ...++...++..+..++.+.+..|.+|++.|+++.|+.+.++.++++++|.+.+.+.+.          .++...+++++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~  475 (502)
T TIGR00887       396 AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFA  475 (502)
T ss_pred             HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHH
Confidence            22222233334455667778889999999999999999999999999999999999884          34456778888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCHHHHHhh
Q 008615          529 AIAFLAVLFIVRTVPETKGLSLEEIESK  556 (559)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (559)
                      ++++++.++ ++++||++++++||+++|
T Consensus       476 ~~~~~~~i~-~~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       476 LFMFLGILF-TLLIPETKGKSLEELSGE  502 (502)
T ss_pred             HHHHHHHHH-heEeccCCCCCHHhhhCC
Confidence            887777664 467799999999888654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=7.7e-40  Score=333.18  Aligned_cols=433  Identities=34%  Similarity=0.569  Sum_probs=316.6

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCC---CCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH
Q 008615          101 LPFLFPALGGLLFGYDIGATSGATISLQSPE---LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI  177 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~  177 (559)
                      .+.++++++.+.++++...+++..+.+.++.   ...+  ++.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLS--ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHHHHHHHhccccccc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3445566778999999999998887766542   1222  5889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc------------hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHH
Q 008615          178 IAAVLYALGALTTAYA------------PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI  245 (559)
Q Consensus       178 ~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  245 (559)
                      ++.++++++.++++++            +.++.++++|+++|++.|...+...+++.|++|+++|++++++.+.+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9999999998888763            2356788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccc--------CCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcC
Q 008615          246 LLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR  317 (559)
Q Consensus       246 ~~g~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (559)
                      ++++.+++.+.        ... +||+.|++.+++.++..+..+++||+|+|+..+         ++.+++++..++..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~---------~~~~~~~~~~~~~~~  239 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSR---------GKQEQAEGILRKIMG  239 (479)
T ss_pred             HHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHc---------CCHHHHHHHHHHHcC
Confidence            99988766543        234 899999999888888777778899999887543         233344444444332


Q ss_pred             CCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchh
Q 008615          318 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAAD  397 (559)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (559)
                      ..+..    ...++.....+.   +..   ..+..+. ..............+....+.+...++.|.+.++.|.+. ..
T Consensus       240 ~~~~~----~~~~~~~~~~~~---~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~  307 (479)
T PRK10077        240 NTLAT----QALQEIKHSLDH---GRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-DI  307 (479)
T ss_pred             ChhHH----HHHHHHHHHHHH---hhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-ch
Confidence            21110    001111000000   000   0011111 111122222233344445555667778899988888876 55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccc
Q 008615          398 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW  477 (559)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (559)
                      ........++..+++.++.++++||+|||++++.+.++.+++.+++...... ...........+++.+++.....+..+
T Consensus       308 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (479)
T PRK10077        308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVCW  386 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccccchhH
Confidence            6677777888899999999999999999999999998888887776543211 112222333333444444444556777


Q ss_pred             eeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH------HhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 008615          478 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------ELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE  551 (559)
Q Consensus       478 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (559)
                      .++.|.+|++.|++++|+.+....++.++++.+++.+.      +..++...|++++++++++.++.+++.+|+|+++.+
T Consensus       387 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  466 (479)
T PRK10077        387 VLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  466 (479)
T ss_pred             HHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence            89999999999999999999999999999887776544      567777888888888888888777888999999998


Q ss_pred             HHHhhhh
Q 008615          552 EIESKIL  558 (559)
Q Consensus       552 ~~~~~~~  558 (559)
                      |.+++++
T Consensus       467 ~~~~~~~  473 (479)
T PRK10077        467 EMEALWE  473 (479)
T ss_pred             HHHHHHh
Confidence            8877655

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=331.55  Aligned_cols=446  Identities=41%  Similarity=0.630  Sum_probs=358.7

Q ss_pred             HHHHHHHHHHHHHhhhccc--ccccccccccccCCCCCCccccccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhchH
Q 008615           98 SVILPFLFPALGGLLFGYD--IGATSGATISLQSPELSGTTWFNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRK  173 (559)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr  173 (559)
                      ..........++.+.+|++  .+..++....+..+....+  ...+.  .+.+|+.+.+.++..++++++|+++|++|||
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk  119 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK  119 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3445556677788888987  6666666666665432222  22233  5679999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhh
Q 008615          174 RELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS  253 (559)
Q Consensus       174 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~  253 (559)
                      +.++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.+++|..|++.||...+..+....+|..++..++.
T Consensus       120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977766


Q ss_pred             cccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Q 008615          254 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL  333 (559)
Q Consensus       254 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (559)
                      ...+...+||..+.+..+++++..+..+++||+|+|+.++         ++.+++++.+.++++..+.+..  .+..+..
T Consensus       200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~---------g~~~~a~~~l~~l~g~~~~~~~--~~~~~~~  268 (513)
T KOG0254|consen  200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK---------GRLEEAKRSLKRLRGLSPEDVE--VELELLK  268 (513)
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc---------CChHHHHHHHHHHhCCCCcchH--HHHHHHH
Confidence            6543312899999999999999888888899999999984         7889999999999885422221  1111111


Q ss_pred             HHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHH
Q 008615          334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMT  413 (559)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (559)
                      ..........+.+..+.++++....++..++..+..+.++++++...+|.+.+++..|.....  .......++..+++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t  346 (513)
T KOG0254|consen  269 IKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGT  346 (513)
T ss_pred             HHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHH
Confidence            111111111122224566666456667888889999999999999999999999999988632  666777778888888


Q ss_pred             HHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc-------CchhHHHHHHHHHHHHhhcccccccceeecccCCc
Q 008615          414 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL  486 (559)
Q Consensus       414 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  486 (559)
                      +++.++.||+|||++++.+...+.++.++++.......       ...+..+...+++...+..+..++.+.+..|.+|.
T Consensus       347 ~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~  426 (513)
T KOG0254|consen  347 LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL  426 (513)
T ss_pred             HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence            99999999999999999999999999988887654432       23566777788888899999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH-HHHhhccCCCCCCHHHHHhhhh
Q 008615          487 RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL-FIVRTVPETKGLSLEEIESKIL  558 (559)
Q Consensus       487 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  558 (559)
                      +.|+.+.++...++++...+....+..+.+..+....|..+++++.+... +.++++||+|+++++|+++.++
T Consensus       427 ~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  427 RLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence            99999999999999999888877777777765545667777777776666 7888999999999999988664

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=6.5e-40  Score=334.76  Aligned_cols=441  Identities=36%  Similarity=0.602  Sum_probs=321.4

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCC-CccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH
Q 008615           99 VILPFLFPALGGLLFGYDIGATSGATISLQSPELS-GTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI  177 (559)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~  177 (559)
                      .+...+++.++.++.+++...+....+.+..+.-. .+..-+.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~  105 (481)
T TIGR00879        26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL  105 (481)
T ss_pred             HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence            33445566667788888988888888777655100 00001244899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc---hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhh--
Q 008615          178 IAAVLYALGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--  252 (559)
Q Consensus       178 ~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--  252 (559)
                      ++.++++++.+++.+.   .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.++  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  185 (481)
T TIGR00879       106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG  185 (481)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999654   34568999999999999999999999999999999999999999999999999999999  


Q ss_pred             -hcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHH
Q 008615          253 -SFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIED  331 (559)
Q Consensus       253 -~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (559)
                       ....... +||+.|++.++..++..+..+++||+|+++..++         +.++..+..++.....+...........
T Consensus       186 ~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (481)
T TIGR00879       186 KVSLNNTL-GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGEDKELLDELEL  255 (481)
T ss_pred             hhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence             6655555 9999999977777777777788999998765431         1122222222222222111111110000


Q ss_pred             HHHHhhhccccccccccchhhcccC--chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHH
Q 008615          332 TLVSLKSSYTDEKSEGSFLEVFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFK  409 (559)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (559)
                      ....  ...+.+..+..+.+.++..  ..++..+...+.++..........++.|.++++.|++. ...+.......++.
T Consensus       256 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~  332 (481)
T TIGR00879       256 IDIK--RSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVN  332 (481)
T ss_pred             HHHH--HHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence            0000  0000111111133333322  13444444555555555556667888899999999887 77888888899999


Q ss_pred             HHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCc-----hhHHHHHHHHHHHHhhcccccccceeecccC
Q 008615          410 LVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-----PLVAVSALLLYVGCYQISFGPISWLMVSEIF  484 (559)
Q Consensus       410 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (559)
                      +++.++.+++.||++||+.+..+.++.+++++++..........     ....+...+++.++++.+..+....+..|.+
T Consensus       333 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (481)
T TIGR00879       333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF  412 (481)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccC
Confidence            99999999999999999999888777777766665322111111     3333444455555566666677777889999


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 008615          485 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE  552 (559)
Q Consensus       485 p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (559)
                      |++.|++++|+.+...+++++++|.+.+.+.+..|+...|++.++++++++++.+++.+|+++++.+|
T Consensus       413 p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       413 PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            99999999999999999999999999999999999999999999888888888777788888766543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.1e-40  Score=300.11  Aligned_cols=401  Identities=18%  Similarity=0.130  Sum_probs=304.5

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 008615          101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~  180 (559)
                      -++..+.++...+.+..-.++.+.|.+.++       .++|.+|+|++.+++.+.|+++.++.|.++||.++|+.+.+++
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            345566677777777777777777777766       8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhh--hcccCC
Q 008615          181 VLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQINA  258 (559)
Q Consensus       181 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l~~~  258 (559)
                      ++.++.+++++++++++.+.++.+++|..+|..+|.+...+..|+++++||+..++++++.++|..+.|++.  +++..+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998  887777


Q ss_pred             CCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhh
Q 008615          259 VGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK  337 (559)
Q Consensus       259 ~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (559)
                      . +||..|++.++++++..+.. +..+++|+-.-.          +..|+.       ++++         .+.. ++.+
T Consensus       182 ~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL----------P~ie~~-------~~d~---------~e~~-~~~~  233 (448)
T COG2271         182 G-GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL----------PPIEEY-------RGDP---------LEIY-EEEK  233 (448)
T ss_pred             c-chhHHHHHHHHHHHHHHHHHHHHhCCCccccCC----------CCHHHh-------hcCc---------hhhh-hhhc
Confidence            7 99999999999998876655 557777741100          001110       0000         0000 0000


Q ss_pred             hccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008615          338 SSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAV  417 (559)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  417 (559)
                      +...-.....-++.+++||..|.+.+...+.+..-+    .+..|.|.|+.+...-+...+......+-+++++|.+++|
T Consensus       234 ~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~----gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~G  309 (448)
T COG2271         234 ENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY----GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAG  309 (448)
T ss_pred             cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            000000111224567889988888777777776665    5889999999775444448899999999999999999999


Q ss_pred             HHhhhc--CCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH
Q 008615          418 AKVDDL--GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL  495 (559)
Q Consensus       418 ~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  495 (559)
                      +++||+  |||....+.+.+....+++..+.   ..+.+......+++..|++..+..-+.-....|+.|++..|++.|+
T Consensus       310 wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~---~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf  386 (448)
T COG2271         310 WLSDKLFKGRRGPMALIFMLLITASLVLYWL---APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGF  386 (448)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhch
Confidence            999996  56655544333332222222221   2223344455555555555544444555678899999999999999


Q ss_pred             HHHHHHH-HHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          496 AVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       496 ~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      ...+.++ |++.+....|.+.|.+||...|+++.+.++++.+++....+
T Consensus       387 ~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         387 VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 99999999999999999999999888888877776655444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.6e-38  Score=291.59  Aligned_cols=371  Identities=24%  Similarity=0.253  Sum_probs=296.0

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 008615          104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  183 (559)
                      +.+.++.|..+.+.......+|.+.++       +|+|..++|++.|+|.++++++.++...+.||+.||++++..+.++
T Consensus        16 ~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814          16 LALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             HHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            445566788888888888899988888       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcch
Q 008615          184 ALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWR  263 (559)
Q Consensus       184 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr  263 (559)
                      .++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.++|.++-+.. |||
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR  167 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWR  167 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998888 999


Q ss_pred             HHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccc
Q 008615          264 YMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD  342 (559)
Q Consensus       264 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (559)
                      +.|++.++++++..+.. ..+|  |+-                                                ...+.
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP--~~~------------------------------------------------~~~~~  197 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP--PSE------------------------------------------------ISGSL  197 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--Ccc------------------------------------------------CCCCC
Confidence            99999999999877665 5577  210                                                00001


Q ss_pred             ccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008615          343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVD  421 (559)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  421 (559)
                      +.+..+..+++|+|..+..++...+.+..++    ....|...++++ .|++. ...++....++++.++|++++|++.|
T Consensus       198 ~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F----~~ftYi~P~L~~v~g~s~-~~vs~~Ll~~Gv~~~~Gn~~gGrl~d  272 (394)
T COG2814         198 PGPLRTLLRLLRRPGVLLGLLATFLFMTGHF----ALYTYIRPFLESVAGFSV-SAVSLVLLAFGIAGFIGNLLGGRLAD  272 (394)
T ss_pred             CcchhHHHHHhcCchHHHHHHHHHHHHcchh----hhHHhHHHHHHHccCCCH-hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            1112235677888887777665555544443    344555555554 56665 88999999999999999999999999


Q ss_pred             hcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHH
Q 008615          422 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF  501 (559)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  501 (559)
                      | +.++.+.....+.++..+.+.+..    .+.+..+....+ .++..............+.. ++.+..+.+++....+
T Consensus       273 r-~~~~~l~~~~~l~a~~~l~l~~~~----~~~~~~~~~~~~-wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~n  345 (394)
T COG2814         273 R-GPRRALIAALLLLALALLALTFTG----ASPALALALLFL-WGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFN  345 (394)
T ss_pred             c-cchhHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHH-HHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHH
Confidence            9 888888888777777777766432    333333333333 22222222222223444433 4889999999999999


Q ss_pred             HHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          502 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       502 ~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      +|..+|..+.|.+.|+.|+....++.+.+.+++.++.+...+.
T Consensus       346 lgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         346 LGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999998888888887766654443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=3.1e-37  Score=312.76  Aligned_cols=394  Identities=18%  Similarity=0.209  Sum_probs=267.4

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCccccccc--hh--HHHH--HHHHHHHHHHHHHHHHHHhhhhhchHHHH
Q 008615          103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLS--AV--QLGL--VVSGSLYGALLGSILVYSIADFLGRKREL  176 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~--~~g~--~~s~~~l~~~i~~~~~g~l~dr~Grr~~~  176 (559)
                      +....++.++++||...++...+.+.++       ++.+  +.  .++.  +.++.++++.++++++|+++||+|||+++
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   90 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL   90 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            3455678899999999988888877665       4322  21  1222  25788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhHhH--------HHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHH
Q 008615          177 IIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG  248 (559)
Q Consensus       177 ~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  248 (559)
                      .+++++++++++++++++|+++        ++++|+++|++.|..++...+++.|++|+++|+++.++...+..+|..+|
T Consensus        91 ~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         91 AITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875        88999999999999999999999999999999999999998888888888


Q ss_pred             HHhhhccc--------CCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCC
Q 008615          249 YFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP  320 (559)
Q Consensus       249 ~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (559)
                      +.+...+.        ..+ |||+.|++.++++++.+++...+||+|+|...+++.         ++.       ..+  
T Consensus       171 ~~~~~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~---------~~~-------~~~--  231 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKL---------EQG-------DRE--  231 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhh---------hhh-------ccc--
Confidence            86654432        234 999999998877776666667789999875432100         000       000  


Q ss_pred             CCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHH
Q 008615          321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT  399 (559)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  399 (559)
                                        . ..+.++.++++++++ +.+........ .+.....++.+..|.|.++++ .+.+. ....
T Consensus       232 ------------------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~-~~~~  289 (490)
T PRK10642        232 ------------------G-LQDGPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSE-DHGV  289 (490)
T ss_pred             ------------------c-ccccccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHH
Confidence                              0 000112234555553 22222222222 222223344567788988854 57665 5566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccccccccee
Q 008615          400 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM  479 (559)
Q Consensus       400 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (559)
                      +......++.+++.++.|+++||+|||+.+..+.++..+....+....  ........+...++...+.+.. ......+
T Consensus       290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~-~g~~~~~  366 (490)
T PRK10642        290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NSNVIGLIFAGLLMLAVILNCF-TGVMAST  366 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            777777888999999999999999999988776654433322211111  1122222222222222222222 2233356


Q ss_pred             ecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615          480 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKGL  548 (559)
Q Consensus       480 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (559)
                      ..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ +..++++..+.++++.+.. ++.||++++
T Consensus       367 ~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~  435 (490)
T PRK10642        367 LPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANR  435 (490)
T ss_pred             HHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence            6789999999999998766677778899999999988765 4445555555555554443 445776554

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=3.1e-37  Score=315.75  Aligned_cols=383  Identities=26%  Similarity=0.341  Sum_probs=283.0

Q ss_pred             cccc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhh
Q 008615          138 FNLS---AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM  214 (559)
Q Consensus       138 ~~~s---~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  214 (559)
                      +|++   ..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+...
T Consensus       119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  198 (505)
T TIGR00898       119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW  198 (505)
T ss_pred             ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchH
Confidence            9999   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhh
Q 008615          215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA  294 (559)
Q Consensus       215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~  294 (559)
                      +...+++.|++|+++|+++.++...+..+|.++++.++..+.    +||+.|++.+++.++..+..+++||+|+|+..+ 
T Consensus       199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~-  273 (505)
T TIGR00898       199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQ-  273 (505)
T ss_pred             HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHC-
Confidence            999999999999999999999999999999999999987652    599999999999888877778899999998764 


Q ss_pred             ccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhh
Q 008615          295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT  374 (559)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (559)
                              ++.+++.+.+++....+......+. ......   ++.++++++..++++++++.++...+...+.++....
T Consensus       274 --------~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  341 (505)
T TIGR00898       274 --------GRIEEALKILQRIAKINGKKLPAEV-LSLSLE---KDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF  341 (505)
T ss_pred             --------CCHHHHHHHHHHHHHHcCCCCCHHH-Hhhhhh---hhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence                    3444555555444433322211111 000000   0001112235678899998887776655554444322


Q ss_pred             ChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCch
Q 008615          375 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP  454 (559)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (559)
                      .++.    .+.+....+.+    ........++..+++.++.+++.||+|||+.+.++.++.+++++++....   ....
T Consensus       342 ~~~~----~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~~  410 (505)
T TIGR00898       342 SYYG----LVLDLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDLY  410 (505)
T ss_pred             HHHH----HhccccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCch
Confidence            1211    22223333333    33444566778889999999999999999999988888777776665421   1212


Q ss_pred             hHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHH
Q 008615          455 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA  534 (559)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  534 (559)
                      +......++..++. ....+..+.+..|.+|++.|++++|+.++...+|++++|.+.+ + +..+...++.+++++.+++
T Consensus       411 ~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       411 FLRTALAVLGKFGI-TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence            22222222222222 2333455688899999999999999999999999999999998 4 4456667777877777777


Q ss_pred             HHHHHhhccCCCCCCHHH
Q 008615          535 VLFIVRTVPETKGLSLEE  552 (559)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~  552 (559)
                      .++. +++||+++++++|
T Consensus       488 ~~~~-~~lpet~~~~l~~  504 (505)
T TIGR00898       488 GILT-LFLPETKGVPLPE  504 (505)
T ss_pred             HHHH-HcCcCCCCCCCCC
Confidence            6654 4578998877653

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=7.3e-37  Score=302.09  Aligned_cols=361  Identities=19%  Similarity=0.186  Sum_probs=269.6

Q ss_pred             hhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 008615          111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  190 (559)
                      +..........+.+|.+.++       +|++..++|++.+.+.+++.++++++|+++||+|||+++..+.++++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   91 (390)
T PRK03545         19 FIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLS   91 (390)
T ss_pred             HHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence            33333333444455666655       99999999999999999999999999999999999999999999999999999


Q ss_pred             HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhH
Q 008615          191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA  270 (559)
Q Consensus       191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~  270 (559)
                      ++++|+++++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.. |||+.|++.+
T Consensus        92 ~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~  170 (390)
T PRK03545         92 ALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIG  170 (390)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988877 9999999999


Q ss_pred             HHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccc
Q 008615          271 PLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF  349 (559)
Q Consensus       271 ~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (559)
                      +++++..+.. ..+||.|+         +    +                                       +....+.
T Consensus       171 ~~~~l~~~~~~~~~~~~~~---------~----~---------------------------------------~~~~~~~  198 (390)
T PRK03545        171 GGALITLLLLIKLLPLLPS---------E----H---------------------------------------SGSLKSL  198 (390)
T ss_pred             HHHHHHHHHHHHhCCCCCC---------C----C---------------------------------------cchHHHH
Confidence            8887765544 34555331         0    0                                       0000113


Q ss_pred             hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Q 008615          350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL  428 (559)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  428 (559)
                      ++.+|++.++.......+......    ....+.+.++++ .|.+. ..++.......++.+++.++.+++.||+++|..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~  273 (390)
T PRK03545        199 PLLFRRPALVSLYLLTVVVVTAHF----TAYSYIEPFVQQVAGLSE-NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL  273 (390)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence            456777766654443333222222    233455555555 56665 678888888999999999999999999998764


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 008615          429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT  508 (559)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~  508 (559)
                      . .+..+..++...+...    ..+.+... ...+..+.......+.......+..| +.+++++|+.+...++|..+||
T Consensus       274 ~-~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~  346 (390)
T PRK03545        274 L-IAIALLLVCLLLLLPA----ANSEWHLS-VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGA  346 (390)
T ss_pred             H-HHHHHHHHHHHHHHHH----hchHHHHH-HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence            3 3433333433333221    12222222 23333333333334444466677766 6889999999999999999999


Q ss_pred             HhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          509 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       509 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      .+.|.+.|..|++..+.+.+++.+++.++.+...+
T Consensus       347 ~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        347 LLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999888888877766554

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.3e-36  Score=303.71  Aligned_cols=396  Identities=15%  Similarity=0.129  Sum_probs=277.3

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  185 (559)
                      ..++.++..++...++..+|.+.++       +|++..+.|++.+.+.+++++++++.|+++||+|||+++.++.+++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            3444555556665666677777665       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      +.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++++.+.. |||+.
T Consensus       101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~  179 (434)
T PRK11663        101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYG  179 (434)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988877 99999


Q ss_pred             HhhhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615          266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK  344 (559)
Q Consensus       266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (559)
                      |++.++++++..+ ..++++|+|++...+   +..+.+   ++..+      ..                  ++..+.+.
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~---~~~~~------~~------------------~~~~~~~~  229 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLP---SVGEWR---HDALE------LA------------------QQQEGAGL  229 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhhcCCC---Cccccc---ccccc------cc------------------hhccccCC
Confidence            9998887766544 445678876532100   000000   00000      00                  00000000


Q ss_pred             cccc-c-hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008615          345 SEGS-F-LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD  421 (559)
Q Consensus       345 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  421 (559)
                      +... + ...++++.++...+...+..+.    ...+..|.|.++. +.|++. .+++.......++.++++++.|++.|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~l~d  304 (434)
T PRK11663        230 SRKEILTKYVLLNPYIWLLSFSYVLVYVV----RAAINDWGNLYMSETLGVDL-VTANSAVSMFELGGFIGALVAGWGSD  304 (434)
T ss_pred             ChhhhHHHHHhcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            0000 1 1245566555544433333322    2346678888885 457776 77888888899999999999999999


Q ss_pred             hc--CCcchhh-hhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHH
Q 008615          422 DL--GRRPLLI-GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL  498 (559)
Q Consensus       422 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~  498 (559)
                      |+  ++|+... ...+...+....+...   ....... .....+..+++..+.......+..|.+|++.++++.|+.++
T Consensus       305 r~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  380 (434)
T PRK11663        305 KLFNGNRGPMNLIFAAGILLSVGSLWLM---PFASYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGL  380 (434)
T ss_pred             HhccCCccHHHHHHHHHHHHHHHHHHHc---ccccHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHH
Confidence            98  3333322 2222222222111111   1111222 22222222222222222223456799999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615          499 TNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL  548 (559)
Q Consensus       499 ~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (559)
                      ..++|.+++|.+.|.+.|..|+...|.+.+++.+++.+..+...++++++
T Consensus       381 ~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        381 FAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            99999999999999999999999999999888888877666666555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=5.6e-37  Score=309.41  Aligned_cols=399  Identities=17%  Similarity=0.101  Sum_probs=278.0

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH
Q 008615           99 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII  178 (559)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~  178 (559)
                      .+.++.+..++.+....+...++...|.+.++       +|++..+.|++.+++.+++++++++.|+++||+|||+++.+
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   99 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF   99 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence            44445566666677777888888888887776       99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-----chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhh
Q 008615          179 AAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS  253 (559)
Q Consensus       179 ~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~  253 (559)
                      ++++++++.++.++     +++++.++++|+++|++.+...+...+++.||+|+++|+++++++..+.++|.++++++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            88888877776665     6899999999999999999999999999999999999999999999999999999999887


Q ss_pred             cccCCC--CcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHH
Q 008615          254 FQINAV--GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE  330 (559)
Q Consensus       254 ~l~~~~--~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (559)
                      ++....  .+||..|.+.++++++..++. ++.+++|+...         ..+. ++   .   ..+....+        
T Consensus       180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~---------~~~~-~~---~---~~~~~~~~--------  235 (467)
T PRK09556        180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG---------WGKA-EE---I---FGEPISEE--------  235 (467)
T ss_pred             HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC---------CCCh-hh---c---ccCccchh--------
Confidence            655432  269999998888877765554 44566654110         0000 00   0   00000000        


Q ss_pred             HHHHHhhhcccccccccc-chhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHH
Q 008615          331 DTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVF  408 (559)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  408 (559)
                      +   +..+. ++...... .+..++++.++...+..++....    ...+..|.|.|+++ .|.+. .+++.......++
T Consensus       236 ~---~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~p~yl~~~~g~s~-~~a~~~~~~~~~~  306 (467)
T PRK09556        236 D---KETES-TDMTKWQIFVEYVLKNPVIWLLCFANIFLYIV----RIGIDNWSPVYAFQELGFSK-EDAINTFTLFEIG  306 (467)
T ss_pred             h---hcccc-ccCcHHHHHHHHHHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHH
Confidence            0   00000 00000000 12357777666555443333332    23467789988865 67776 7788888888899


Q ss_pred             HHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccc
Q 008615          409 KLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT  488 (559)
Q Consensus       409 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  488 (559)
                      .+++.++.|+++||++||+.+.....+..++..++...   ...+.+...+. .+..+....+..........|.+|++.
T Consensus       307 ~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~p~~~  382 (467)
T PRK09556        307 ALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---HATSEYMYLAS-LFALGFLVFGPQLLIGVAAVGFVPKKA  382 (467)
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---hcCcHHHHHHH-HHHHHHHHhhHHHHHHHHHHhhcchhh
Confidence            99999999999999999987765544433332222211   11222222222 222222221221122245669999999


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHhhHHHHH------------hcCchhhHHHHHHHHHHHHHHHHhh
Q 008615          489 RGRGISLAVLTNFG-SNAIVTFAFSPLKE------------LLGAENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       489 ~~~~~g~~~~~~~~-g~~i~~~i~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      +|++.|+.+..+++ |.+++|.+.|.+.|            ..||...|.+.+++.+++.++.++.
T Consensus       383 ~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        383 IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999886 77999999999999            5778889988887777776655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4.1e-36  Score=297.55  Aligned_cols=392  Identities=18%  Similarity=0.201  Sum_probs=271.8

Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q 008615          102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV  181 (559)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~  181 (559)
                      .+.+++++.++.++|...++...+.+.++       +|++..++|++.+++.+++++++++.|+++||+|||+++..+++
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~   81 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV   81 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence            34455566778888888888888877666       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC---
Q 008615          182 LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---  258 (559)
Q Consensus       182 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---  258 (559)
                      +++++++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++++...   
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887632   


Q ss_pred             --CCcchHHHhhhHHHHHHHHHH-hhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Q 008615          259 --VGGWRYMYGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS  335 (559)
Q Consensus       259 --~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (559)
                        ..|||+.|++.++++++..++ .+++||+|+..         +... .++.+...+..+....+.+.....       
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~---------~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-------  224 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA---------KWLD-EEDKKALKEMIDNDQLTLEQPEGA-------  224 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC---------CCCC-HHHHHHHHHHHHhccccccccccc-------
Confidence              129999999988888765544 46678887410         0000 001111111111100000000000       


Q ss_pred             hhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc--CCCCchhHHHHHHHHHHHHHHHH
Q 008615          336 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA--GFSAAADATRVSVVIGVFKLVMT  413 (559)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  413 (559)
                      .++  +....+..+++++ ++.++...    +.+++.......+..|.|.++++.  +.+. ..++.......++.+++.
T Consensus       225 ~~~--~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~-~~~~~~~~~~~l~~~~g~  296 (412)
T TIGR02332       225 FAH--AAMPQRSMLREIF-TPAIMLYT----LAYFCLTNTLSAINIWTPQILQSFNQGSSN-IMIGLLAAIPQFCTIFGM  296 (412)
T ss_pred             ccc--ccccHHHHHHHhc-ChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHhHHHhhHHHHHHHHHH
Confidence            000  0000011233333 34333332    223333334456788999999885  3444 678888899999999999


Q ss_pred             HHHHHHhhhcCCcchh-hhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhH
Q 008615          414 WIAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG  492 (559)
Q Consensus       414 ~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  492 (559)
                      ++.|+++||+++|+.. .....+..++. ++...    .......+...++. +.......+..+....|.+|++.|+++
T Consensus       297 l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~a  370 (412)
T TIGR02332       297 IWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA----TDHNLIQLLGIIMA-SMGSFSAMAIFWTTPDQSISLQARAIA  370 (412)
T ss_pred             HHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh----cCCHHHHHHHHHHH-HHHhhhhhhHHHhhcccccchHHHHHH
Confidence            9999999999987753 33333333332 22211    11222222111111 111111223334555678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHH
Q 008615          493 ISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIA  531 (559)
Q Consensus       493 ~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~  531 (559)
                      .|+.+..+++|++++|.+.|.+.|..| |...+.+.+++.
T Consensus       371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            999999999999999999999999886 777777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.2e-36  Score=298.91  Aligned_cols=379  Identities=23%  Similarity=0.257  Sum_probs=279.9

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 008615          100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA  179 (559)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~  179 (559)
                      +..+.++.+..++++++....+...|.+.++       +|.++.+.+++.+++.++..+++++.|+++||+|||+++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (406)
T PRK11551         14 ALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            3344555566788888888888888887766       999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC
Q 008615          180 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV  259 (559)
Q Consensus       180 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~  259 (559)
                      .++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551         87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877776


Q ss_pred             CcchHHHhhhHHHHHHHHHH-hhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhh
Q 008615          260 GGWRYMYGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS  338 (559)
Q Consensus       260 ~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (559)
                       +||+.|++.+++.++..++ ..++||+|++...++         +.++                  ..           
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~------------------~~-----------  207 (406)
T PRK11551        167 -AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG---------AGKQ------------------RA-----------  207 (406)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC---------cchh------------------hh-----------
Confidence             9999999988776665544 356788775321100         0000                  00           


Q ss_pred             ccccccccccchhhcccC---chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHH
Q 008615          339 SYTDEKSEGSFLEVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI  415 (559)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (559)
                              ...+..++.+   ..+...+..    +...........|.|.++++.|.+. ...+.......++.+++.++
T Consensus       208 --------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~  274 (406)
T PRK11551        208 --------PVLRALFGEGRATATLLLWISY----FFTLIVLYFLLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSLL  274 (406)
T ss_pred             --------hhHHHHhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHHH
Confidence                    0000111111   111111111    1111222346667889998888877 77888888999999999999


Q ss_pred             HHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH
Q 008615          416 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL  495 (559)
Q Consensus       416 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  495 (559)
                      .|++.||+++|+.+..+.+...++++++...     ...+... ...+..++...+..+...++..|.+|++.|+++.|+
T Consensus       275 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  348 (406)
T PRK11551        275 IGALMDRLRPRRVVLLIYAGILASLAALAAA-----PSFAGML-LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGA  348 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhH
Confidence            9999999999998887666555554444321     2222222 223333333333445556788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhcCc-hhhHHHHHHHHHHHHHHHHhhcc
Q 008615          496 AVLTNFGSNAIVTFAFSPLKELLGA-ENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       496 ~~~~~~~g~~i~~~i~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      .+....+|..++|.+.|.+.+..+. ...++..+.+.+++.++.+...+
T Consensus       349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999987653 34444444445454444444433

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7.5e-36  Score=299.13  Aligned_cols=369  Identities=16%  Similarity=0.173  Sum_probs=272.4

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 008615          104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  183 (559)
                      ..+.++.+..+++.....+..+.+.++       +|+++.+.+++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            445566677788888878888877766       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcch
Q 008615          184 ALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWR  263 (559)
Q Consensus       184 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr  263 (559)
                      +++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.. +||
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~  172 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GWR  172 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998888777 999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccc
Q 008615          264 YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE  343 (559)
Q Consensus       264 ~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (559)
                      +.|++.++..++...+....||++++...+.                     +.+.+..+                ...+
T Consensus       173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~---------------------~~~~~~~~----------------~~~~  215 (426)
T PRK12307        173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKL---------------------SGKGKHSQ----------------SAWS  215 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCChHHHHhhh---------------------hccccccc----------------cchh
Confidence            9999865544433333333566554321100                     00000000                0000


Q ss_pred             cccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                      .....++++++++.++.......+.+. .+.....+..+.|.++++.+.+. ...+.......++.+++.++.+++.||+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~  293 (426)
T PRK12307        216 VFSLSMKGLFNRAQFPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDT-GVVSNLMTAAAFGTVLGNIVWGLCADRI  293 (426)
T ss_pred             hhhHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            011235677777766654443332222 22222235567888888888776 6778888888899999999999999999


Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 008615          424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS  503 (559)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  503 (559)
                      +||+.+..+.++..+..+.+...    .......+....+..+....+..+....++.|.+|++.|++++|+.+....++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~  369 (426)
T PRK12307        294 GLKKTFSIGLLMSFLFIFPLFRI----PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATS  369 (426)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHH
Confidence            99998887776665554433321    11222222222222222222333344467789999999999999999999999


Q ss_pred             HHHHHHhhHHHHHhcCchhh
Q 008615          504 NAIVTFAFSPLKELLGAENI  523 (559)
Q Consensus       504 ~~i~~~i~g~l~~~~g~~~~  523 (559)
                      +.++|.+.|.+.+..|+...
T Consensus       370 ~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        370 GTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             HHHHHHHHHHHHHcccHHHH
Confidence            99999999999999886544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=3.5e-35  Score=289.48  Aligned_cols=360  Identities=16%  Similarity=0.105  Sum_probs=269.8

Q ss_pred             cccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHh
Q 008615          118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG  197 (559)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  197 (559)
                      ..+++.+|.+.++       +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..++.+++++.++++++++++
T Consensus        26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~   98 (393)
T PRK09705         26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA   98 (393)
T ss_pred             hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence            4556777877776       999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHH
Q 008615          198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG  277 (559)
Q Consensus       198 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~  277 (559)
                      .++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.+...+||+.+.+.++..++..
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997 78999999999999999999999999887765489999877666555443


Q ss_pred             HHhhccC-CchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC
Q 008615          278 IGMWSLP-PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP  356 (559)
Q Consensus       278 ~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (559)
                      +..++.. +.|+                                .+                  +++  +...++.++++
T Consensus       178 ~~~~~~~~~~~~--------------------------------~~------------------~~~--~~~~~~~l~~~  205 (393)
T PRK09705        178 FAWWWQSAREVA--------------------------------SS------------------HKT--TTTPVRVVFTP  205 (393)
T ss_pred             HHHHHHhcCCCc--------------------------------cc------------------cCC--CcCCcccccCH
Confidence            3332221 1110                                00                  000  00123344555


Q ss_pred             chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHH
Q 008615          357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI  436 (559)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  436 (559)
                      ..+...+...+..    ..+.....|.|.++++.+.+. ..++.......++.++++++.+++.||++||+....+..+.
T Consensus       206 ~~~~l~~~~~~~~----~~~~~~~~~lp~~l~~~g~s~-~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        206 RAWTLGVYFGLIN----GGYASLIAWLPAFYIEIGASA-QYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            5444433332222    233457778889998888776 78889999999999999999999999999999888887776


Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccC-CccchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 008615          437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF-PLRTRGRGISLAVLTNFGSNAIVTFAFSPLK  515 (559)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  515 (559)
                      .++..++...    ...... ... .+. +.......+.......+.. |++.+++..|+.+...++++.++|.+.|++.
T Consensus       281 ~~~~~~~~~~----~~~~~~-~~~-~l~-g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~  353 (393)
T PRK09705        281 LVGFCGFIWL----PLQLPV-LWA-MVC-GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR  353 (393)
T ss_pred             HHHHHHHHHc----cchHHH-HHH-HHH-HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665544321    111111 111 122 2222223333334444555 4678999999999999999999999999999


Q ss_pred             HhcC-chhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008615          516 ELLG-AENIFLLFAAIAFLAVLFIVRTVPETKGLS  549 (559)
Q Consensus       516 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (559)
                      |..| +...|.+.++++++..++.+.+.+|++.+.
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            9987 666677777777777777777788877654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=4e-35  Score=293.06  Aligned_cols=375  Identities=21%  Similarity=0.239  Sum_probs=253.2

Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCCCCCcccc---ccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 008615          102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWF---NLSAVQLGL---VVSGSLYGALLGSILVYSIADFLGRKRE  175 (559)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~---~~s~~~l~~~i~~~~~g~l~dr~Grr~~  175 (559)
                      .+...+++.+++.+|...++...+.+.++       +   +.+..+.+.   +.++.+++..++++++|+++||+|||++
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHI-------FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34455667788899998888887777665       4   345554444   4444555556999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhHh--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHH
Q 008615          176 LIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL  247 (559)
Q Consensus       176 ~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  247 (559)
                      +..++++++++++++++++++.        .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.++
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998874        58899999999999999999999999999999999999999888888888


Q ss_pred             HHHhhhccc--------CCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCC
Q 008615          248 GYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP  319 (559)
Q Consensus       248 g~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (559)
                      ++.++..+.        ..+ |||++|++.++++++...+...+||+|++...+                          
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~--------------------------  228 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQQETRA--------------------------  228 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh--------------------------
Confidence            887655432        134 999999998888877665555677766421000                          


Q ss_pred             CCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhH
Q 008615          320 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADA  398 (559)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  398 (559)
                                             .++..+++++++++..+...+...+   .....++.+..|.|.++++ .+.+. .+.
T Consensus       229 -----------------------~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~lp~~l~~~~g~s~-~~~  281 (432)
T PRK10406        229 -----------------------LKEAGSLKGLWRNRRAFIMVLGFTA---AGSLCFYTFTTYMQKYLVNTAGMHA-NVA  281 (432)
T ss_pred             -----------------------hcccccHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCH-HHH
Confidence                                   0001235566666544433322221   1112233466788888865 56665 667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccce
Q 008615          399 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL  478 (559)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (559)
                      +.......++..++.++.|+++||++||+.+....++.++....+..... ........+....+...+.+ ...+....
T Consensus       282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  359 (432)
T PRK10406        282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVSSPYAAFGLVMCALLIVS-FYTSISGI  359 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            77777777788888899999999999998876655543333222211111 11122222211211111111 12233457


Q ss_pred             eecccCCccchhhHHHHHHHHHHH-HHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHHHHHh
Q 008615          479 MVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       479 ~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      +..|.+|++.|+++.|+.+...+. .+...|.+.+ +.+..| +...+++.+++.+++.+..++
T Consensus       360 ~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        360 LKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999987664 3445777777 446666 444455555555555554444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=2.9e-42  Score=348.01  Aligned_cols=433  Identities=33%  Similarity=0.564  Sum_probs=329.8

Q ss_pred             HHHHHhhhcccccccccccccccC--CCCCCc-cc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQS--PELSGT-TW-FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV  181 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~  181 (559)
                      +.++.+..||+...++...+....  ....++ ++ .+.+..+.+++.+...+|..+|++++|.++||+|||+.++++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            345567888888777655544441  111111 00 11145678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhch---hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          182 LYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       182 ~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      +..+++++.++++   +++.++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+...
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999999998887665332


Q ss_pred             C--CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHh
Q 008615          259 V--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL  336 (559)
Q Consensus       259 ~--~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (559)
                      .  .+||+.+++.++++++..+..+++||||+|+..|         ++.+++++.++++++.+..++...    +..++ 
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~---------~~~~~A~~~l~~~~~~~~~~~~~~----~~~~~-  230 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSK---------GRDEEAEKVLRKLRGKEIEDEEIE----EIKAE-  230 (451)
T ss_pred             cccccccccccccccccccccccccccccccceeccc---------cccccccccccccccccccccccc----ccccc-
Confidence            2  1599999999999988888888999999999875         555677777777554422221111    11111 


Q ss_pred             hhccccccccccchhhcccCc-hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHH
Q 008615          337 KSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI  415 (559)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (559)
                        ..+.++.+..++++++++. .++..+...+..+....+.....+|.+.++++.+.++.   ........+..+++.++
T Consensus       231 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~  305 (451)
T PF00083_consen  231 --KKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLL  305 (451)
T ss_pred             --cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc
Confidence              1111112256778888765 34555555566666666767788888888888887763   34444555667778888


Q ss_pred             HHHHhhhcCCcchhhhhHHHHHHHHHHHH-HHHHhhcC---chhHHHHHHHHHHHHhhcccccccceeecccCCccchhh
Q 008615          416 AVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR  491 (559)
Q Consensus       416 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  491 (559)
                      +.++.||+|||++++.+..+.+++.+.++ ........   .....+...++....+..+..++.+.+..|++|++.|++
T Consensus       306 ~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~  385 (451)
T PF00083_consen  306 AIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST  385 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccc
Confidence            88999999999999998888887777664 11111111   133344444445556666777888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHhhh
Q 008615          492 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI  557 (559)
Q Consensus       492 ~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (559)
                      +.|+...++.+++++++.+...+.+..+....+.++++++++..++.++++||+|+++++|+++++
T Consensus       386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            999999999999999999999988888756778888888888888889999999999999998864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=5.2e-35  Score=261.04  Aligned_cols=391  Identities=18%  Similarity=0.224  Sum_probs=290.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.+..|..++......|..+++..||.++|++|||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+ .|..
T Consensus       108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~  186 (528)
T KOG0253|consen  108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVD  186 (528)
T ss_pred             hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHh
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccC
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG  297 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~  297 (559)
                      .++-.|..|..+|...+-.. ..+.+|.++...+........ ||||.......+..+..+..+++||||||...+    
T Consensus       187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~----  260 (528)
T KOG0253|consen  187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK----  260 (528)
T ss_pred             HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc----
Confidence            99999999999998887777 999999999999998888888 999999888888888888888999999999885    


Q ss_pred             CCchhhhHHHHHHHHHhhcCCCCCCchh---------hHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHH
Q 008615          298 KGSLQEYKEQAISALGKLRRRPPGDKLS---------ERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV  368 (559)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (559)
                           ++++++.+.++++.+.|...-..         ..+.++......+....++......+++.. .+++..+.....
T Consensus       261 -----G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp-~lrkttlllw~i  334 (528)
T KOG0253|consen  261 -----GDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSP-KLRKTTLLLWRI  334 (528)
T ss_pred             -----CChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcCh-HHHHHHHHHHHH
Confidence                 67777877777766554432110         011111000111111223334445566654 344333333333


Q ss_pred             HHHHhhChhhHHHhHHHHHHHc--------------------CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Q 008615          369 LFQQITGQPSVLYYAGPILQSA--------------------GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL  428 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  428 (559)
                      ++.+-..++........+++..                    ..+. .....-.....+..+.|.++.++++||+|||+.
T Consensus       335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~~iverlGRKkT  413 (528)
T KOG0253|consen  335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITGVIVERLGRKKT  413 (528)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence            3333222233333333333221                    1111 222334555668889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 008615          429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT  508 (559)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~  508 (559)
                      +...+++++++.+++...     ..........+..-.+..+++. +.+.|..|++|+..|+++.|.+..++.+|+++.|
T Consensus       414 Mal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p  487 (528)
T KOG0253|consen  414 MALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSP  487 (528)
T ss_pred             HHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhh
Confidence            999999888887776653     2233334444444445554544 5679999999999999999999999999999999


Q ss_pred             HhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008615          509 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL  550 (559)
Q Consensus       509 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (559)
                      .+.  +........+..+++++++++.+...++..|+|+|+.
T Consensus       488 ~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  488 VIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             HHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            988  4444455677788888999998888888889998864

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=4.3e-34  Score=289.91  Aligned_cols=395  Identities=15%  Similarity=0.070  Sum_probs=280.4

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 008615          100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA  179 (559)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~  179 (559)
                      +..+..++++.++..+|..+++.++|.+..+       +|.+..+.+|+.+.|.++++++.+++|+++||+|||++++++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~   77 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG   77 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3456677788899999999999999999877       999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccC-CcccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          180 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       180 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      .++++++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.+.
T Consensus        78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999888888887766 678999999999999999999999999999988


Q ss_pred             CCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHH---HHHhhcCCCCCCchhhHHHHH---
Q 008615          259 VGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAIS---ALGKLRRRPPGDKLSERQIED---  331 (559)
Q Consensus       259 ~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---  331 (559)
                      . +|||.|++...++++..++. +++|+.+.     ++.++.+..+.......   ....+................   
T Consensus       158 ~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~~-----~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (495)
T PRK14995        158 F-YWGSVFLINVPIVLVVMGLTARYVPRQAG-----RRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT  231 (495)
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            7 99999999888877765544 55676542     00111111111000000   000111111111100000000   


Q ss_pred             ----HHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHH
Q 008615          332 ----TLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIG  406 (559)
Q Consensus       332 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  406 (559)
                          .......+. +.+.+.-..+++|++.+....+..+......    ....++.|.+++. .|+++ .++++...+..
T Consensus       232 ~~~~l~~f~~~e~-~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lq~v~g~s~-~~ag~~~~~~~  305 (495)
T PRK14995        232 GALLLGLFIRTQL-AASRPMIDMRLFTHRIILSGVVMAMTAMITL----VGFELLMAQELQFVHGLSP-LEAGMFMLPVM  305 (495)
T ss_pred             HHHHHHHHHHHHh-cCCCCCcCHHHhCCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence                000000000 1111122246788877665554433333322    2456677888877 46665 89999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCc
Q 008615          407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL  486 (559)
Q Consensus       407 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  486 (559)
                      ++..++.++.|++.||+++|+.+..+.++.+++.+++....  .....+......++.+.+.+. ..+.......+..|+
T Consensus       306 ~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~G~g~g~-~~~~~~~~~~~~~~~  382 (495)
T PRK14995        306 VASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD--FSTQQWQAWGLMALLGFSAAS-ALLASTSAIMAAAPP  382 (495)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCH
Confidence            99999999999999999999988888777776665554321  112222223233333333333 333334566778899


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008615          487 RTRGRGISLAVLTNFGSNAIVTFAFSPLKE  516 (559)
Q Consensus       487 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  516 (559)
                      ++++.+.++.++.+.+|+.+|+.+.|.+.+
T Consensus       383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        383 EKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998865

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=8.3e-34  Score=283.45  Aligned_cols=384  Identities=17%  Similarity=0.161  Sum_probs=256.8

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCcccc-ccchhHHHHHH-----HHHHHHHHHHHHHHHHhhhhhchHHHH
Q 008615          103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWF-NLSAVQLGLVV-----SGSLYGALLGSILVYSIADFLGRKREL  176 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~-----s~~~l~~~i~~~~~g~l~dr~Grr~~~  176 (559)
                      .....++.+++++|...++...+....++.     + +.++. .+++.     ++.+++..+++++.|+++||+|||+++
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         24 ALGSFAGAVVDWYDFLLYGITAALVFNREF-----FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            445566778899998887766553322210     1 34444 34443     455677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhHh--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHH
Q 008615          177 IIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG  248 (559)
Q Consensus       177 ~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  248 (559)
                      +++.+++++++++++++++++        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        588899999999999999999999999999999999999999999999998


Q ss_pred             HHhhhcccC--------CCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCC
Q 008615          249 YFVGSFQIN--------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP  320 (559)
Q Consensus       249 ~~l~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (559)
                      ..+...+..        .. |||++|++.+++.++...+....||+|+|...+++.+                       
T Consensus       178 ~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~-----------------------  233 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA-----------------------  233 (438)
T ss_pred             HHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc-----------------------
Confidence            877665432        34 9999999988877665555556788887543210000                       


Q ss_pred             CCchhhHHHHHHHHHhhhcccccccccc-chhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhH
Q 008615          321 GDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADA  398 (559)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  398 (559)
                                           +.+++.+ .+.++++++.+...+..   .+......+....|.|.++++ .+.+. ...
T Consensus       234 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~~~~g~s~-~~~  288 (438)
T PRK09952        234 ---------------------AAKKRIPVIEALLRHPGAFLKIIAL---RLCELLTMYIVTAFALNYSTQNLGLPR-ELF  288 (438)
T ss_pred             ---------------------cccccCCHHHHHHHchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCH-HHH
Confidence                                 0000001 11234444333332211   111122223455677777654 55554 344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccce
Q 008615          399 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL  478 (559)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (559)
                      .......++..+++.++.|+++||++||+.+..+.++..++.+.+....  ...+....+....+..++......+..++
T Consensus       289 ~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  366 (438)
T PRK09952        289 LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EAQSIFWIVFFSIMLANIAHDMVVCVQQP  366 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556677788889999999999999988877665544433332211  11222222222222222222222344567


Q ss_pred             eecccCCccchhhHHHHHHHHH-HHHHHHHHHhhHHHHHhcC--chhhHHHHHHHHHHHHHHHHhhccC
Q 008615          479 MVSEIFPLRTRGRGISLAVLTN-FGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       479 ~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      +..|.+|++.|+++.|+.+... .+++.++|.+.+.+.+..+  |...+.+.+++.+++.+..+ ..++
T Consensus       367 ~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~  434 (438)
T PRK09952        367 MFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKD  434 (438)
T ss_pred             HHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence            8899999999999999976664 4888999999999998653  55666666666666655544 3454

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6.1e-35  Score=282.74  Aligned_cols=348  Identities=18%  Similarity=0.086  Sum_probs=246.0

Q ss_pred             cccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHH
Q 008615          120 TSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL  199 (559)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  199 (559)
                      +++.+|.+.++       +|+|..+.|++.+++.+++.+++++.|+++||+|||++++.+++....+.+.....++++++
T Consensus        10 ~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903        10 FSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44566666666       99999999999999999999999999999999999998776665555544433344799999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHH
Q 008615          200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       200 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~  279 (559)
                      +++|+++|++.+. .+.....+.|++|+++|++++++...+..+|.++++++++++.+.. |||+.|++.++++++..++
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHH
Confidence            9999999999986 5566666799999999999999999999999999999999998877 9999999988888776554


Q ss_pred             h-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          280 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       280 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      . +++||+|++..      +                      ..+  .   ++             ...+++++++++.+
T Consensus       161 ~~~~lp~~p~~~~------~----------------------~~~--~---~~-------------~~~~~~~ll~~~~~  194 (368)
T TIGR00903       161 VLAALPALPFQAA------E----------------------GFG--F---KD-------------AVKEFGALAGRKDL  194 (368)
T ss_pred             HHHHcCCCCCCCC------C----------------------Ccc--h---HH-------------HHHHHHHHHcChhH
Confidence            4 56888875210      0                      000  0   00             00125678888877


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---chhhh-hHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---PLLIG-GVC  434 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~  434 (559)
                      +...+..++.....    +.+..|.|.++++.+++. . .+.......+.+.++   .+++.||..||   +.... ...
T Consensus       195 ~~~~~~~~~~~~~~----~~~~~wlp~~L~~~g~s~-~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       195 WIIGAILGFGVALF----DNLAIWLEAALRPAGLED-I-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAAL  265 (368)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCh-H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHH
Confidence            76665544444333    457789999998887664 3 455555544544444   47788877654   32222 222


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 008615          435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL  514 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l  514 (559)
                      +.++....+..     .......+... ...+++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+
T Consensus       266 ~~a~~~~~~~~-----~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~  339 (368)
T TIGR00903       266 LIAAFFLALAF-----ELNRLALFAFI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF  339 (368)
T ss_pred             HHHHHHHHHHH-----ccccHHHHHHH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence            22332222221     11222222222 2222333333344567889999999999999999999999999999999888


Q ss_pred             HHhcCchhhHHHHHHHHHHHHHHHH
Q 008615          515 KELLGAENIFLLFAAIAFLAVLFIV  539 (559)
Q Consensus       515 ~~~~g~~~~~~~~~~~~~~~~~~~~  539 (559)
                      ..  |....|.++++..+++.+..+
T Consensus       340 ~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       340 IS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hc--CHHHHHHHHHHHHHHHHHHHH
Confidence            73  667788888888877777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.1e-34  Score=288.61  Aligned_cols=385  Identities=19%  Similarity=0.202  Sum_probs=273.7

Q ss_pred             ccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch
Q 008615          115 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP  194 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  194 (559)
                      ++...++...|.+.++       +|.+..+.+++.+++.++..++.+++|+++||+|||+++.++.++.+++.+++++++
T Consensus         8 ~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893         8 LDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             HHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence            3444455555655555       999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHH
Q 008615          195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL  274 (559)
Q Consensus       195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~  274 (559)
                      +++.++++|+++|++.+...+....++.|++|+++|++++++.....++|..+++.+++.+.+.. +||+.|++.+++.+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  159 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGI  159 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888877 89999999988887


Q ss_pred             HHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhc
Q 008615          275 LMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF  353 (559)
Q Consensus       275 ~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (559)
                      +..+.. ++.+|+|+.         .+...++++ ....+..+.+                 .+++.+++..+...++.+
T Consensus       160 ~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~  212 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQK---------AKWLTEEEK-YIVVGGLLAE-----------------QQGKGPSTPKKYQIKELL  212 (399)
T ss_pred             HHHHHhhheecCCCCc---------cccCCHHHH-hhcchhhccc-----------------cccccccCCCccchHHHh
Confidence            766555 445655420         000000000 0000000000                 000011122233466777


Q ss_pred             ccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhh-
Q 008615          354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG-  431 (559)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-  431 (559)
                      +++.++...+..++....    ...+..+.|.++++ .+.+. .+.+.......++.+++.++.+++.||++||+.... 
T Consensus       213 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  287 (399)
T TIGR00893       213 KDRRVWGLALGQFLVNIG----LGFFLTWFPTYLVQERGLSI-LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF  287 (399)
T ss_pred             cCHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhcccH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            777665555444333332    23466677877765 45555 778888889999999999999999999999862211 


Q ss_pred             hHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 008615          432 GVCGIALSLLLLSAYYKILG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA  510 (559)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i  510 (559)
                      ......++.+.......... ........... ..+++..+..+....+..|.+|++.|+++.|+.+.+..+|..++|.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i  366 (399)
T TIGR00893       288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALV-ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV  366 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHH-HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence            11111111111111110111 11222222222 22233333566777899999999999999999999999999999999


Q ss_pred             hHHHHHhcC-chhhHHHHHHHHHHHHHHHHh
Q 008615          511 FSPLKELLG-AENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       511 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      .|.+.+..| +...+.+.+++.+++.++.++
T Consensus       367 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       367 IGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            999999988 888888888777776665443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=5.2e-34  Score=284.39  Aligned_cols=383  Identities=19%  Similarity=0.221  Sum_probs=269.9

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 008615          103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~  182 (559)
                      +..+.++.+..+++....+...+.+.++       +|++..+.+++.+++.++..+++++.|+++||+|||++++++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4455667788888888888888887766       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCC-c
Q 008615          183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-G  261 (559)
Q Consensus       183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~  261 (559)
                      .+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ +
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  166 (405)
T TIGR00891        87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG  166 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998876651 4


Q ss_pred             chHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccc
Q 008615          262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT  341 (559)
Q Consensus       262 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (559)
                      ||+.|++.++..++..+....+||++++...++         +.++.++..++..+..+..       +...        
T Consensus       167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-------~~~~--------  222 (405)
T TIGR00891       167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHA---------GKALVRTMVDILYGGEHRI-------ANIV--------  222 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhh---------hhhhhhhHHHHHhccchhh-------hhhh--------
Confidence            999999877777666666667888775432210         0000011111111000000       0000        


Q ss_pred             cccccccchhhcccCchhHHHH-HHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008615          342 DEKSEGSFLEVFQGPNLKAFII-GGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAK  419 (559)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  419 (559)
                       ++.....++..  +..+.... ......+... .......+.|.++. +.+.+. .+.+.+.....++.+++.++.+++
T Consensus       223 -~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l  297 (405)
T TIGR00891       223 -MTLAAAMVQSA--GKRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSP-HTVANIVVFSNIGAIVGGCVFGFL  297 (405)
T ss_pred             -hhhhHHhhhhh--hhhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00000011111  11111111 1111111111 11234445666664 457666 788888889999999999999999


Q ss_pred             hhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHH
Q 008615          420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT  499 (559)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~  499 (559)
                      .||++||+.+..+.++..+....+...    ..+.+. +....+..++......+....++.|.+|++.|++++|+.+.+
T Consensus       298 ~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  372 (405)
T TIGR00891       298 GDWLGRRKAYVCSLLAGQLLIIPVFAI----GANVAV-LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQL  372 (405)
T ss_pred             HHHhCchhhhHHHHHHHHHHHHHHHHh----CCchHH-HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHH
Confidence            999999998887766543332222211    122222 222222223333333445557889999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHhcC-chhhHHH
Q 008615          500 NFGSNAIVTFAFSPLKELLG-AENIFLL  526 (559)
Q Consensus       500 ~~~g~~i~~~i~g~l~~~~g-~~~~~~~  526 (559)
                      ..+++.++|.+.|.+.|..| |...+..
T Consensus       373 ~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       373 GNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            99999999999999999998 6554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.5e-33  Score=277.48  Aligned_cols=344  Identities=19%  Similarity=0.231  Sum_probs=252.7

Q ss_pred             cccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHH
Q 008615          122 GATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLV  201 (559)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  201 (559)
                      +.+|.+.++       +|.++.+.|+..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++
T Consensus        41 ~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (394)
T PRK10213         41 SLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLI  113 (394)
T ss_pred             hhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence            345555555       9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhh
Q 008615          202 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW  281 (559)
Q Consensus       202 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  281 (559)
                      +|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+.. +||+.|++.++++++..+..+
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l~~~  192 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIFWII  192 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887 999999998877766554433


Q ss_pred             -ccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhH
Q 008615          282 -SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA  360 (559)
Q Consensus       282 -~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (559)
                       ..||.|+.                                                    +++.....++.+++|.++.
T Consensus       193 ~~~p~~~~~----------------------------------------------------~~~~~~~~~~~l~~~~~~~  220 (394)
T PRK10213        193 KSLPSLPGE----------------------------------------------------PSHQKQNTFRLLQRPGVMA  220 (394)
T ss_pred             HHCCCCCcc----------------------------------------------------cccchhHHHHHhcCHHHHH
Confidence             35554310                                                    0000011335566766665


Q ss_pred             HHHHHHHHHHHHhhChhhHHHh-HHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHH
Q 008615          361 FIIGGGLVLFQQITGQPSVLYY-AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS  439 (559)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  439 (559)
                      ..+...+.+...+    ....+ .|.+.++.|++. ...+......+++.+++.++.+++.||.+ ++.+..+..+..+.
T Consensus       221 ~~~~~~~~~~~~~----~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~  294 (394)
T PRK10213        221 GMIAIFMSFAGQF----AFFTYIRPVYMNLAGFGV-DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHH
Confidence            5443333332222    23334 477777788877 67888888899999999999999999954 44433333333332


Q ss_pred             HHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 008615          440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG  519 (559)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  519 (559)
                      .+.+...    ....+......++. ++......+...+++.+..| +.++...++.....++|..+|+.+.|.+.|..|
T Consensus       295 ~~~l~~~----~~~~~~~~~~~~l~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g  368 (394)
T PRK10213        295 ALVLTLW----GSDKIVATGVAIIW-GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG  368 (394)
T ss_pred             HHHHHHH----hhhHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2222211    12233333333333 33333334444456677777 556777788888889999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHH
Q 008615          520 AENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~  537 (559)
                      +...+...+++.++..++
T Consensus       369 ~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        369 LTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            877777766665555443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=7.4e-34  Score=284.15  Aligned_cols=358  Identities=20%  Similarity=0.277  Sum_probs=241.5

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHH-HHHH-----HHHHHHHHHHHHHhhhhhchHHHH
Q 008615          103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLV-VSGS-----LYGALLGSILVYSIADFLGRKREL  176 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~l~~~i~~~~~g~l~dr~Grr~~~  176 (559)
                      ...++++.+++.+|...++...|.+.++       ++.++.+.+.+ .+..     .++..+++++.|+++||+|||+++
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            4566678899999999999999988877       88877765543 3332     233357899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhHh--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHH
Q 008615          177 IIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG  248 (559)
Q Consensus       177 ~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  248 (559)
                      +.+.+++++++++++++++++        .++++|+++|++.+...+....++.|++|+++|++++++...+.++|..++
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        468899999999999999999999999999999999999999888888888


Q ss_pred             HHhhhccc--------CCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCC
Q 008615          249 YFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP  320 (559)
Q Consensus       249 ~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (559)
                      +.+++.+.        +.. |||++|++..+...+........||++++...+                       .   
T Consensus       170 ~~~g~~l~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-----------------------~---  222 (434)
T PRK15075        170 ALLGYLLNQWLSPAQMAEW-GWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-----------------------H---  222 (434)
T ss_pred             HHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-----------------------h---
Confidence            88777652        344 999999986544332222222233432210000                       0   


Q ss_pred             CCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHH
Q 008615          321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT  399 (559)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  399 (559)
                                           +.+.+..++...+++   +..+...+..+.....+.....|.|.++++ .|.+. .+.+
T Consensus       223 ---------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~-~~~~  277 (434)
T PRK15075        223 ---------------------RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSA-ADSL  277 (434)
T ss_pred             ---------------------ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHH
Confidence                                 000000011122222   122111122222233345677889999876 57776 6677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccccccccee
Q 008615          400 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM  479 (559)
Q Consensus       400 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (559)
                      +...+..++.+++.++.|+++||++||+.+..+.++..+.........  .............+..+.......+....+
T Consensus       278 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (434)
T PRK15075        278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL--VAAPSFARMLAVELWLSFLYGSYNGAMVVA  355 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            888888899999999999999999999987766544332221111111  111222111111111111222233334467


Q ss_pred             ecccCCccchhhHHHHHHHHHH-HHHHHHHHhhHHHHHhcCch
Q 008615          480 VSEIFPLRTRGRGISLAVLTNF-GSNAIVTFAFSPLKELLGAE  521 (559)
Q Consensus       480 ~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~i~g~l~~~~g~~  521 (559)
                      ..|.+|++.|+++.|+.+.+.. +++.++|.+.|.+.|..|+.
T Consensus       356 ~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        356 LTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            8899999999999999766555 45788999999999998864

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=1.2e-34  Score=286.08  Aligned_cols=354  Identities=16%  Similarity=0.054  Sum_probs=264.9

Q ss_pred             ccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhH
Q 008615          119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV  198 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  198 (559)
                      ..++..|.+.++       +|++..++|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++++++.
T Consensus        21 ~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~   93 (377)
T TIGR00890        21 TWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA   93 (377)
T ss_pred             hhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence            345566666665       9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHH
Q 008615          199 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       199 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~  278 (559)
                      ++++|++.|++.+...+.....+.+++| ++|++++++...+.++|..+++++.+.+.+.. +||+.|++.++++++..+
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890        94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888888999987 57999999999999999988777766666666 999999999988887766


Q ss_pred             Hhh-ccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCc
Q 008615          279 GMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN  357 (559)
Q Consensus       279 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (559)
                      ..+ +++++|+...                        +++.  +                   .++++...++.++++.
T Consensus       172 ~~~~~~~~~~~~~~------------------------~~~~--~-------------------~~~~~~~~~~~~~~~~  206 (377)
T TIGR00890       172 LGAFLIGYPPGQLI------------------------KTNI--E-------------------VSVKDYTVWEMLRTPQ  206 (377)
T ss_pred             HHHHheecCchhcc------------------------ccCc--c-------------------cchhhhhHHHHHcCcc
Confidence            554 4444332000                        0000  0                   0000112345667776


Q ss_pred             hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHH
Q 008615          358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA  437 (559)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  437 (559)
                      ++...+......+..    .....+.+.+.++.+.+. ...+.......++.++++++.|++.||++||+.+..+.++..
T Consensus       207 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  281 (377)
T TIGR00890       207 FWVLYLSFFLNAVSG----LLLIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISA  281 (377)
T ss_pred             HHHHHHHHHHHhHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            665544333332222    123345556667777665 677888888999999999999999999999999888877777


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008615          438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL  517 (559)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  517 (559)
                      ++.+.+....   .......+....+. +.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+.
T Consensus       282 ~~~~~~~~~~---~~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       282 VGMAAMLFIP---MLNDVLFLATVALV-FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             HHHHHHHHcc---cchhHHHHHHHHHH-HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7766554321   11112221222222 2222233344456788999999999999999999999999999999999999


Q ss_pred             cCchhhHHHHHHHHHHHH
Q 008615          518 LGAENIFLLFAAIAFLAV  535 (559)
Q Consensus       518 ~g~~~~~~~~~~~~~~~~  535 (559)
                      .|+...|.+.+++.+++.
T Consensus       358 ~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       358 IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hchhhHHHHHHHHHHHhc
Confidence            999988888877766554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=284.18  Aligned_cols=389  Identities=15%  Similarity=0.115  Sum_probs=256.4

Q ss_pred             HHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 008615          108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  187 (559)
                      +.......+...++...|.+. +       .|++..+.+++.+++.++++++++++|+++||+|||++++++.++++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~p~l~-~-------~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~  107 (452)
T PRK11273         36 FGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  107 (452)
T ss_pred             HHHHHHHHHHHHHHHhhHHHH-H-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHH
Confidence            344444444433444455443 2       37899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhch----hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHH-HHHHhhhcccCCCCcc
Q 008615          188 LTTAYAP----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL-LGYFVGSFQINAVGGW  262 (559)
Q Consensus       188 ~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~l~~~~~~w  262 (559)
                      +++++++    +++.+++.|++.|++.+...+.....+.+++|+++|+++++++..+.++|.. .+++++..+.... +|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw  186 (452)
T PRK11273        108 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DW  186 (452)
T ss_pred             HHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cH
Confidence            9888763    7888999999999999988888888899999999999999999999999874 5555543333333 99


Q ss_pred             hHHHhhhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccc
Q 008615          263 RYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT  341 (559)
Q Consensus       263 r~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (559)
                      |+.|++.++++++..+ ..+++||+|+....+         . .++.++   +......              . ++. +
T Consensus       187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~---------~-~~~~~~---~~~~~~~--------------~-~~~-~  237 (452)
T PRK11273        187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLP---------P-IEEYKN---DYPDDYN--------------E-KHE-Q  237 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC---------C-hhhhhh---ccccccc--------------c-ccC-C
Confidence            9999998888777544 446678876521000         0 000000   0000000              0 000 0


Q ss_pred             cccccccc-hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008615          342 DEKSEGSF-LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAK  419 (559)
Q Consensus       342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  419 (559)
                      +.+.+..+ ..++|++.++...+...+.....    +....|.|.++++ .+++. ..++....+..++.+++.++.|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~G~l  312 (452)
T PRK11273        238 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWM  312 (452)
T ss_pred             CccHHHHHHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000011 23566776666555444443332    2466788999987 46665 677788888889999999999999


Q ss_pred             hhhc--CCcchhhh-hHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHH
Q 008615          420 VDDL--GRRPLLIG-GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA  496 (559)
Q Consensus       420 ~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~  496 (559)
                      +||+  +||..... ...+..++.+.+..   ....+.+...... +..+....+.......+..|.+|++.+|++.|+.
T Consensus       313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  388 (452)
T PRK11273        313 SDKVFRGNRGATGVFFMTLVTIATIVYWL---NPAGNPTVDMACM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  388 (452)
T ss_pred             HHHHccCCcchHHHHHHHHHHHHHHHHHH---hcccChHHHHHHH-HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHH
Confidence            9999  44443222 22222222222211   1112222222222 2222221121222224567899999999999999


Q ss_pred             HHHHHHHHHH-HHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          497 VLTNFGSNAI-VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       497 ~~~~~~g~~i-~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      +...++|+.+ +|.+.|.+.|..|+...|++.++++++++++...+.+
T Consensus       389 ~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  436 (452)
T PRK11273        389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  436 (452)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            9988888765 7999999999999999999888887777665554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1.9e-33  Score=276.55  Aligned_cols=368  Identities=15%  Similarity=0.162  Sum_probs=263.7

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  185 (559)
                      .++..+..+.......+.+|.+.++       +|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            3344566666666777777777766       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      +.++++++++++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++++.+.. +||+.
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~  159 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYT  159 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999999999988877 99999


Q ss_pred             HhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615          266 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK  344 (559)
Q Consensus       266 f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (559)
                      |++.+++.++..+.. +++||.++         +    .+                 ..     .+              
T Consensus       160 f~~~~~~~~~~~~~~~~~lp~~~~---------~----~~-----------------~~-----~~--------------  190 (382)
T PRK10091        160 FLLIAVFNIAVLASIYFWVPDIRD---------E----AK-----------------GG-----LR--------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCc---------c----cc-----------------cC-----HH--------------
Confidence            999988877665543 45666431         0    00                 00     00              


Q ss_pred             ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                         ...+.++++..+.......+...    +......+.+.++. ..|.+. ...+.......++.+++.++.+++.||+
T Consensus       191 ---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~~r~  262 (382)
T PRK10091        191 ---EQFHFLRSPAPWLIFAATMFGNA----GVFAWFSYIKPYMMFISGFSE-TSMTFIMMLVGLGMVLGNLLSGRLSGRY  262 (382)
T ss_pred             ---HHHHHhcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhHHHheecccc
Confidence               00123344443433222222111    11123334444554 467776 7888999999999999999999999999


Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 008615          424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS  503 (559)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  503 (559)
                      ++|+.+..+..+.+++.+++....    +..+..+...++...+......+.......+..|++.++.+  ..+....+|
T Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g  336 (382)
T PRK10091        263 SPLRIAAVTDFIIVLALLMLFFFG----GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLG  336 (382)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHH
Confidence            999998888777776665543321    12222222222222222222222222334454455555544  346678899


Q ss_pred             HHHHHHhhHHHHHh-cCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          504 NAIVTFAFSPLKEL-LGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       504 ~~i~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      .+++|.+.|.+.|. .++...+.+.++++++.......+.++
T Consensus       337 ~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (382)
T PRK10091        337 SAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRY  378 (382)
T ss_pred             HHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999996 578888888777666665555444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=4.8e-33  Score=270.27  Aligned_cols=362  Identities=15%  Similarity=0.112  Sum_probs=259.6

Q ss_pred             cccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc----
Q 008615          118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----  193 (559)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----  193 (559)
                      ...++..+.+.+++      +|+|.+|.+++.+++.++++++.++.|++.||+|.|+++.++.+++++.+++++++    
T Consensus        51 ~~~~~l~~~~~~~~------~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~  124 (462)
T PRK15034         51 MLFSAVTVNLNKIG------FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP  124 (462)
T ss_pred             HHHHHHHHHhhhhh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc
Confidence            33444455554421      99999999999999999999999999999999999999999999999999999987    


Q ss_pred             -hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc-----CC---------
Q 008615          194 -PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-----NA---------  258 (559)
Q Consensus       194 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-----~~---------  258 (559)
                       ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++++++..+.     ..         
T Consensus       125 ~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~  203 (462)
T PRK15034        125 NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQA  203 (462)
T ss_pred             CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence             8999999999999998 6688999999999999999999999998777777776665554322     10         


Q ss_pred             ---CCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Q 008615          259 ---VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS  335 (559)
Q Consensus       259 ---~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (559)
                         ..+||..+++..++.++..++.+++.++++                                               
T Consensus       204 ~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~-----------------------------------------------  236 (462)
T PRK15034        204 DGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA-----------------------------------------------  236 (462)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-----------------------------------------------
Confidence               115888888888888777666654322211                                               


Q ss_pred             hhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHH
Q 008615          336 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI  415 (559)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (559)
                           +.+.+..+..+.+|+|..|.+.+.+++.+.    ++..+.++.|+++++ .++. ........+..+...+.+++
T Consensus       237 -----~~~~~~~~~~~vlk~~~~Wllslly~~tFG----~fvg~s~~lp~~~~~-~~~~-~~~l~~~~l~~l~~~l~rpl  305 (462)
T PRK15034        237 -----SSRASIADQLPVLQRLHLWLLSLLYLATFG----SFIGFSAGFAMLAKT-QFPD-VNILRLAFFGPFIGAIARSV  305 (462)
T ss_pred             -----ccccCHHHHHHHhCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHH-HcCh-HHHHHHHHHHHHHHHHHHHh
Confidence                 001111235568888887776655544333    334577788888866 3332 23333344556788899999


Q ss_pred             HHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHhhcccccccceeecccCCc--------
Q 008615          416 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP-LVAVSALLLYVGCYQISFGPISWLMVSEIFPL--------  486 (559)
Q Consensus       416 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------  486 (559)
                      +|+++||+|+++++.++++++.++...+..........+ +.....++....+.+.+.. ..+-++.+.+|+        
T Consensus       306 gG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~  384 (462)
T PRK15034        306 GGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKM  384 (462)
T ss_pred             hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccc
Confidence            999999999999999888777776544433321111112 2222222222233333332 333556666663        


Q ss_pred             -------------cchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          487 -------------RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       487 -------------~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                                   ++.|.+.|+..+.+.+|+++.|.++|...+..| +...|+.+.+..+++.++.|..+.++
T Consensus       385 ~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        385 KGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             cccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                         157889999999999999999999999999877 66778888888888888887765443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.5e-33  Score=279.75  Aligned_cols=361  Identities=22%  Similarity=0.168  Sum_probs=256.9

Q ss_pred             hhhcccccccccccccc-cCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q 008615          111 LLFGYDIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT  189 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  189 (559)
                      ++...+.++..+.++.. .++       +|.|+.++|++.+++.+++.+++++.|+++||+|||++++.+.++++++.++
T Consensus        25 ~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (399)
T PRK05122         25 FISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL   97 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence            44444555556666653 334       8999999999999999999999999999999999999999999998887776


Q ss_pred             HHhc--------hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCc
Q 008615          190 TAYA--------PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG  261 (559)
Q Consensus       190 ~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~  261 (559)
                      +.++        .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+.+.. |
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g  176 (399)
T PRK05122         98 YLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-G  176 (399)
T ss_pred             HHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-c
Confidence            6553        257789999999999999999999999999999999999999999999999999999999988877 9


Q ss_pred             chHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccc
Q 008615          262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT  341 (559)
Q Consensus       262 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (559)
                      ||+.+++.+++.++..+.....|+++.             ++                 .                    
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------------~--------------------  206 (399)
T PRK05122        177 LAGLGLLIMLLALLGLLLARPRPAVPP-------------VK-----------------G--------------------  206 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCC-------------CC-----------------c--------------------
Confidence            999988877665544433332332210             00                 0                    


Q ss_pred             cccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008615          342 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD  421 (559)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  421 (559)
                         ++.++++.+++  .+.......+..+.    +.....+.+.++.+.+.+   ..+.......++.+++.++.+++.|
T Consensus       207 ---~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~  274 (399)
T PRK05122        207 ---ERLPFRRVLGR--VWPYGMGLALASIG----FGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLIN  274 (399)
T ss_pred             ---cchhHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence               00001111111  11111111111111    123445666677666553   3455666778888999999999999


Q ss_pred             hcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHH
Q 008615          422 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF  501 (559)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  501 (559)
                      |+++|+.+..+..+.+++..++...     .+.+..+....+.+.+.+ ...+.......|.+|++.|+++.|+.+....
T Consensus       275 r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (399)
T PRK05122        275 RLGGLRVAIVSLLVEILGLLLLWLA-----PSPWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLD  348 (399)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999998888777777666555431     223333332222322222 2333433556688899999999999999999


Q ss_pred             HHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615          502 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL  548 (559)
Q Consensus       502 ~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (559)
                      +|..+++.+.|.+.+..|++..+++.+++.+++.++.+++ +++++|
T Consensus       349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  394 (399)
T PRK05122        349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRAPR  394 (399)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence            9999999999999999999999998888887777655554 333333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.7e-33  Score=283.29  Aligned_cols=399  Identities=15%  Similarity=0.102  Sum_probs=271.1

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCC---------------ccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008615          104 LFPALGGLLFGYDIGATSGATISLQSPELSG---------------TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD  168 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d  168 (559)
                      .++.++......|...++.+.+.+..+.-..               +.+++++..+.|++.+++.+++.+++++.|+++|
T Consensus        22 ~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  101 (465)
T TIGR00894        22 FLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAG  101 (465)
T ss_pred             HHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHH
Confidence            3344444556667777776766665421110               0028999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHhc--hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHH
Q 008615          169 FLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL  246 (559)
Q Consensus       169 r~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  246 (559)
                      |+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.+
T Consensus       102 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  181 (465)
T TIGR00894       102 KYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF  181 (465)
T ss_pred             HhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887654  56888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc-cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchh
Q 008615          247 LGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS  325 (559)
Q Consensus       247 ~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (559)
                      +++++++.+.+...+||+.|++.++++++..+++++ .+|+|+..        . ..++.++ + ..++           
T Consensus       182 i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--------~-~~~~~~~-~-~i~~-----------  239 (465)
T TIGR00894       182 IFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--------P-CISKFEK-K-YINS-----------  239 (465)
T ss_pred             HHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--------C-CCCHHHH-H-HHHh-----------
Confidence            999999998876239999999999988877666644 55555310        0 0000000 0 0000           


Q ss_pred             hHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHH
Q 008615          326 ERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVV  404 (559)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  404 (559)
                               ..+++.++.+.+.+++++++++.++...+..+....    ....+..|.|.++++ .+.+. ...++....
T Consensus       240 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~-~~~g~~~~~  305 (465)
T TIGR00894       240 ---------SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSG-KENGLLSSL  305 (465)
T ss_pred             ---------hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcCh-HHhHHHHHH
Confidence                     000000011123457788888776665544433333    334577788988866 56666 788888888


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcchhhh---hHHHHHHHH---HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccce
Q 008615          405 IGVFKLVMTWIAVAKVDDLGRRPLLIG---GVCGIALSL---LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL  478 (559)
Q Consensus       405 ~~~~~~~~~~~~g~l~d~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (559)
                      ..++.+++.++.|+++||+++|+....   ..+...++.   .+..+.........+..+..+++..++. ....+....
T Consensus       306 ~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~  384 (465)
T TIGR00894       306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS-SGPLAGVLI  384 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh-hhhhhhhhh
Confidence            899999999999999999765432210   011111111   1111111111122222222222222222 222233334


Q ss_pred             eecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc--C-chhhHHHHHHHHHHHHHHHHh
Q 008615          479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--G-AENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       479 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--g-~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      ...|..| +.+|.+.|+.++.+.+++.++|.+.|.+.+..  + |...|.+.+++.+++.++..+
T Consensus       385 ~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       385 NSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             chhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            5567766 58999999999999999999999999988753  3 667788877777777665444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.1e-34  Score=287.23  Aligned_cols=375  Identities=16%  Similarity=0.104  Sum_probs=280.8

Q ss_pred             cccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh-----
Q 008615          118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----  192 (559)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----  192 (559)
                      ......+|....+       ++.+..+.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++.+.     
T Consensus        34 ~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~  106 (417)
T PRK10489         34 GLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP  106 (417)
T ss_pred             HHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence            3344455555544       7789999999999999999999999999999999999999988888877665542     


Q ss_pred             chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHH
Q 008615          193 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL  272 (559)
Q Consensus       193 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~  272 (559)
                      .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +|++.|++.++.
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~  185 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAG  185 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            5678999999999999999888999999999999999999999999999999999999999988776 899999998888


Q ss_pred             HHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhh
Q 008615          273 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV  352 (559)
Q Consensus       273 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (559)
                      .++..++.+.+|++++..       +    +               . .+.  .                ++.+..++.+
T Consensus       186 ~~~~~~~~~~l~~~~~~~-------~----~---------------~-~~~--~----------------~~~~~~~~~~  220 (417)
T PRK10489        186 TFITLLPLLRLPALPPPP-------Q----P---------------R-EHP--L----------------RSLLAGFRFL  220 (417)
T ss_pred             HHHHHHHHHhCCCCCCCC-------c----c---------------c-ccc--h----------------HHHHHHHHHH
Confidence            777766666677643200       0    0               0 000  0                0000123345


Q ss_pred             cccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhh
Q 008615          353 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG  431 (559)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  431 (559)
                      +++|.++...+...+..+     ......+.|.++++ .+.+. ...+++.....++.+++.++.+++.||.++++.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~  294 (417)
T PRK10489        221 LASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQMGA-AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLL  294 (417)
T ss_pred             HcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCCCh-hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHH
Confidence            566655444333222211     12355577888877 67766 778888889999999999999999999777777777


Q ss_pred             hHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          432 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      +.++.+++.+++..      ...+.......+..+.......+...++..|..|++.||+++|+.+....+|..+++.+.
T Consensus       295 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~  368 (417)
T PRK10489        295 STLGSFLAVGLFGL------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL  368 (417)
T ss_pred             HHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence            77666666554432      112222222223333333333345557788999999999999999999999999999999


Q ss_pred             HHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHhhh
Q 008615          512 SPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI  557 (559)
Q Consensus       512 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (559)
                      |.+.+..|+...++..+++.++..++.+..+++.|+++.+|.+++.
T Consensus       369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (417)
T PRK10489        369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA  414 (417)
T ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            9999999988888888888777777777888898988888887764

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5.6e-33  Score=283.98  Aligned_cols=407  Identities=17%  Similarity=0.207  Sum_probs=273.7

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 008615          103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~  182 (559)
                      +..+.++.++.+++.....+.++.+..+       +|++..+.+++.+.+.+++.++.++.|+++||+|||++++++.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         22 FSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            3344456677777887877778877766       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 008615          183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW  262 (559)
Q Consensus       183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~w  262 (559)
                      .+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.. +|
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-GW  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877 99


Q ss_pred             hHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccc
Q 008615          263 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD  342 (559)
Q Consensus       263 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (559)
                      |+.|++.++..++.++....+||++++...++.+.+      .   ++..+.....+. .....................
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  243 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAP------V---RTMVDILYRGEH-RIINILLTLAAAAALWFCFAG  243 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhhhcccccc------c---hhHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHh
Confidence            999988655555444444567777654222110000      0   000000000000 000000000000000000000


Q ss_pred             ccccccch-------------h--hcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHH
Q 008615          343 EKSEGSFL-------------E--VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIG  406 (559)
Q Consensus       343 ~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  406 (559)
                      . ....+.             .  ....+..+..........+..+........+.|.+++ +.|.+. .+.+.+.....
T Consensus       244 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~-~~~g~~~~~~~  321 (496)
T PRK03893        244 N-LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP-HTVANVLFFSG  321 (496)
T ss_pred             h-hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH-HHHHHHHHHHH
Confidence            0 000000             0  0000011111111111112221112235567888885 677776 78899999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCc
Q 008615          407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL  486 (559)
Q Consensus       407 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  486 (559)
                      ++.+++.++.|++.||+++|+.+..+..+..+..+.+...    ............+..++...+..+....++.|.+|+
T Consensus       322 ~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (496)
T PRK03893        322 FGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT  397 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH
Confidence            9999999999999999999998887765555444333221    112222222222222233333344555678899999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHH
Q 008615          487 RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL  533 (559)
Q Consensus       487 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  533 (559)
                      +.|++++|+.+....+|+.++|.+.|.+.+..|+...+...++++.+
T Consensus       398 ~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        398 EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988777665544433

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=7.1e-33  Score=273.72  Aligned_cols=366  Identities=15%  Similarity=0.145  Sum_probs=265.7

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  185 (559)
                      +.++.++.+.+....+...|.+.++       +|++..+.+++.+.+.+++.++++++|++.||+|||++++.+.++.++
T Consensus        12 ~~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i   84 (394)
T PRK03699         12 SFLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL   84 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3445566777777777778887766       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      +.++++++++++.++++|+++|++.+...+....++.|++|+++|+++++.......+|..++|.+.+.+.....+||+.
T Consensus        85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~  164 (394)
T PRK03699         85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV  164 (394)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988776543399999


Q ss_pred             HhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccc
Q 008615          266 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS  345 (559)
Q Consensus       266 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (559)
                      |++.+++.++..++.++. +.|+.            +++              .+++                  +++. 
T Consensus       165 f~~~~~~~~~~~~~~~~~-~~p~~------------~~~--------------~~~~------------------~~~~-  198 (394)
T PRK03699        165 YACIGLVYVAIFILTLFS-EFPAL------------GKH--------------APKA------------------DKPV-  198 (394)
T ss_pred             HHHHHHHHHHHHHHHHhc-CCccc------------ccc--------------Cccc------------------cCcc-
Confidence            999888777665544432 22210            000              0000                  0000 


Q ss_pred             cccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008615          346 EGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG  424 (559)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  424 (559)
                         .++.+ ++.++...+..++    .......+..|.|.++++ .+.+. .+++.+.....++..+++++.+++.||++
T Consensus       199 ---~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~  269 (394)
T PRK03699        199 ---AKEKW-GIGVLFLAIAALL----YILAQLTFISWVPEYAQKKFGMSL-EDAGNLVSNFWMAYMVGMWIFSFIVRFFD  269 (394)
T ss_pred             ---ccccC-ChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCh-HHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               00011 1222222222222    222233567789999855 57766 77888888888999999999999999999


Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHH
Q 008615          425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN  504 (559)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  504 (559)
                      +|+.+.....+..+.+.++..     ..+....... .+..++......+...++..+..| +.++...+.......+|.
T Consensus       270 ~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~  342 (394)
T PRK03699        270 LQRILTVLAGLALVLMYLFVN-----TDDPSHLLYA-ILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGT  342 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH-----cCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHH
Confidence            999887766655554443322     1222222222 222333333333444455566655 446778888888999999


Q ss_pred             HHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHh
Q 008615          505 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       505 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      .++|.+.|.+.+..|+...+++.+++++++.+++..
T Consensus       343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999988888888777776554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1e-32  Score=274.19  Aligned_cols=387  Identities=17%  Similarity=0.114  Sum_probs=276.6

Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH
Q 008615           97 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL  176 (559)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~  176 (559)
                      ++.++..+++.+..++..++...+.+.++.+.++       +|.+..+.++..+.+.+++.+++++.|+++||+|||+++
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l   81 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM   81 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            4555666667777777777777777777777666       999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008615          177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI  256 (559)
Q Consensus       177 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  256 (559)
                      +++.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++......+|..+||.+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402         82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888999999999999999999999999888999999999999988


Q ss_pred             CCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Q 008615          257 NAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS  335 (559)
Q Consensus       257 ~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (559)
                      +.. +||+.|++.+++.++..+.. +..||+++..            ++.                .  ..         
T Consensus       162 ~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----------------~--~~---------  201 (406)
T PRK15402        162 HVL-PWRGMFVLFAALAALSFFGLWRAMPETAGRV------------GEK----------------L--SL---------  201 (406)
T ss_pred             Hcc-CccHHHHHHHHHHHHHHHHHHHhCCCCCccc------------ccc----------------c--cH---------
Confidence            876 99999999888887766544 4466643200            000                0  00         


Q ss_pred             hhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Q 008615          336 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTW  414 (559)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (559)
                             ++...+++.++++|.++...+...+......    ....+.|.++. ..+.++ .+.+.......++.+++.+
T Consensus       202 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~~~~~g~~  269 (406)
T PRK15402        202 -------KELGRDYKLVLKNRRFVAGALALGLVSLPLL----AWIALSPVILISGEQLSS-YEYGLLQVPVFGALIAGNL  269 (406)
T ss_pred             -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHH
Confidence                   0001124566777766655544333332221    23445566654 467765 6677777777788899999


Q ss_pred             HHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHH
Q 008615          415 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS  494 (559)
Q Consensus       415 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  494 (559)
                      +.+++.||+++|+.+..+.++..++.+++...........++.+....+...+.+.. .+......... +++++|++.+
T Consensus       270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~-~~~~~g~~~~  347 (406)
T PRK15402        270 TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLFS-SDVSKGTVSA  347 (406)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH-hhhHHHHHhhh-ccccccHHHH
Confidence            999999999999998888777777666665432111122222222222232222222 22222333333 4488999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          495 LAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       495 ~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      +.+..+.++..+++.+.+.+.+..+........++..++..++...+.++
T Consensus       348 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        348 AMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999888775444444333333333333333433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=3e-32  Score=268.16  Aligned_cols=357  Identities=16%  Similarity=0.161  Sum_probs=263.0

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 008615          105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  184 (559)
                      +..++.++.+.+.....+.+|.+..+       +|.|..++|++.+.+.+++.++++++|+++||+|||+++..+.++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633         10 LLLCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455677778888888888888876       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchH
Q 008615          185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY  264 (559)
Q Consensus       185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~  264 (559)
                      ++.++++++++++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+.. .|..
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~  161 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSVL  161 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cchH
Confidence            999999999999999999999999999988888888888999999999999999999999999999999987653 3333


Q ss_pred             HHhhhHHHHHHHHHHhh-ccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccc
Q 008615          265 MYGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE  343 (559)
Q Consensus       265 ~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (559)
                      .+ ..+........+.+ ..++++.                                                     ++
T Consensus       162 ~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~  187 (381)
T PRK03633        162 PW-VTGLVLAAILPLLFTRILNQQA-----------------------------------------------------EN  187 (381)
T ss_pred             HH-HHHHHHHHHHHHHHhcccCCCC-----------------------------------------------------CC
Confidence            33 32222222111111 1111100                                                     00


Q ss_pred             cccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                      ++..+.++.++++.++..........+..    .....+.|.++++.+.+. ...+.......++.+++++..|++.||+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~  262 (381)
T PRK03633        188 HDSTSIWPMLKLRQARLGVNGCIISGIVL----GSLYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRF  262 (381)
T ss_pred             CCCCCHHHHHHhcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence            00112445667766554333222222211    234557888888887776 6778888888899999999999999999


Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 008615          424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS  503 (559)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  503 (559)
                      ++|+.+..+..+..++...+..      . ... .....+ .+.......|.......|..|+++++...+..+...++|
T Consensus       263 ~~~~~l~~~~~~~~~~~~~~~~------~-~~~-~~~~~l-~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG  333 (381)
T PRK03633        263 GRLLVLRVQVFVVILGSIAMLS------Q-AAM-APALFI-LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVG  333 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhh------h-HHH-HHHHHH-HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            9999888777766665543321      1 111 111112 222222344556577788888888888888888889999


Q ss_pred             HHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          504 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       504 ~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      ..++|.+.|.+.|+.|+.+.|.+.+++.++..++
T Consensus       334 ~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        334 SLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888887777655543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=282.16  Aligned_cols=394  Identities=21%  Similarity=0.216  Sum_probs=292.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +..+.....+..+++++|.++|++++|+++||+|||+++++++++..++.+++++++|++.+++.|+++|++.+....+.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccC
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG  297 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~  297 (559)
                      ..++.|++++++|+.++.+ ......++.+++++++++..   +||+.+++..+++++.++..++.||+|||+..+    
T Consensus       193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~----  264 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK----  264 (521)
T ss_pred             HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc----
Confidence            9999999999999999999 77777777888888887765   899999999999998888877778999999985    


Q ss_pred             CCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChh
Q 008615          298 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP  377 (559)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (559)
                           ++.+++.+.+++....++.......................+++..+.++++.|+++...+...+.++.....++
T Consensus       265 -----g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~  339 (521)
T KOG0255|consen  265 -----GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYY  339 (521)
T ss_pred             -----CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHH
Confidence                 556777777777655442222222222221111111112223345688899988666555544444433222111


Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      +.    +......|    ..........+..........+...|++|||.....+..+..++++..++....  ...+..
T Consensus       340 gl----~~~~~~lg----~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  409 (521)
T KOG0255|consen  340 GL----SLNVSGLG----GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--LGGWLH  409 (521)
T ss_pred             hh----hhhhhhcC----chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--chhHHH
Confidence            11    11222223    244555555666788888888999999999999999999999998888875431  111233


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      .+...+..++...++... +.+..|++|+..|..+.+.......++++++|.+...... ......+.+++.+..+.+++
T Consensus       410 ~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~  487 (521)
T KOG0255|consen  410 WILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLL  487 (521)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHH
Confidence            444444444444444444 6889999999999999999999999999999987754444 33333344457777777777


Q ss_pred             HHhhccCCCCCCHHHHHhh
Q 008615          538 IVRTVPETKGLSLEEIESK  556 (559)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~  556 (559)
                      ...++||++++.+.+..++
T Consensus       488 ~~~~lpet~~~~l~~t~~~  506 (521)
T KOG0255|consen  488 SLLLLPETKGKPLPGTLLD  506 (521)
T ss_pred             HHhcCcccCCCCCchhHHH
Confidence            7788999999887655443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.4e-35  Score=268.96  Aligned_cols=445  Identities=22%  Similarity=0.297  Sum_probs=318.6

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008615           92 EAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTW-FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL  170 (559)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~  170 (559)
                      ....|+... .+.++.++.+.++||...++...+-+..-+..+++. =+.++...+.+..+..+|..+|++++|+++||+
T Consensus        33 ~g~qw~~fk-~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~  111 (538)
T KOG0252|consen   33 EGLQWKHFK-AIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF  111 (538)
T ss_pred             cchhHHHHH-HHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334555544 456788899999999998887777665544332210 125667788999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhch-------hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHH
Q 008615          171 GRKRELIIAAVLYALGALTTAYAP-------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVL  243 (559)
Q Consensus       171 Grr~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  243 (559)
                      |||+++...++++.+++++++++.       -++++.+.|++.|+|.|+-+|...++.+|...+++||...+...+..++
T Consensus       112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~  191 (538)
T KOG0252|consen  112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF  191 (538)
T ss_pred             cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence            999999999999999999888853       2578889999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHhhhcccC----CC----------CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHH
Q 008615          244 GILLGYFVGSFQIN----AV----------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAI  309 (559)
Q Consensus       244 G~~~g~~l~~~l~~----~~----------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~  309 (559)
                      |...|.+++..+..    ..          .=||..|.+.++++++.+...+.+||+++|.....        ++.+.+.
T Consensus       192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~--------~~~~~a~  263 (538)
T KOG0252|consen  192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVS--------KKLKQAA  263 (538)
T ss_pred             hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhh--------cCHhhhh
Confidence            88887777655431    11          14999999999999998888899999999864331        1111111


Q ss_pred             HHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 008615          310 SALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS  389 (559)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (559)
                         ++.+...+.      ..++...........++....+...+..+ .-..+++.+..++..-..++....+...++++
T Consensus       264 ---~d~~k~~~~------~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~  333 (538)
T KOG0252|consen  264 ---GDMKKVLSV------DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA  333 (538)
T ss_pred             ---hcccccccc------ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence               111111100      00000000000000111111133333322 22556666777777767777788888889988


Q ss_pred             cCCCCchhHH-------H-HHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008615          390 AGFSAAADAT-------R-VSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL  461 (559)
Q Consensus       390 ~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (559)
                      .++.+..+..       . -..+...+.+.|..+...++|++||++..+.+++++.+..+.++..+... .......+..
T Consensus       334 ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~-~~~~Gf~v~y  412 (538)
T KOG0252|consen  334 IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL-ENTIGFVVLY  412 (538)
T ss_pred             hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc-cccCceeehH
Confidence            8876633222       1 12222233344666777889999999999999999999888887643211 1222233344


Q ss_pred             HHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH-----hcCchhhHHHHHHHHHHHHH
Q 008615          462 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-----LLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-----~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+...+...+.+.....+.+|.+|++.|++..|+..+.+..|++++...+.++.+     ..|..+++++++++++++.+
T Consensus       413 ~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~  492 (538)
T KOG0252|consen  413 SLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGIL  492 (538)
T ss_pred             HHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHh
Confidence            4455566667777788999999999999999999999999999999999999999     78889999999999988887


Q ss_pred             HHHhhccCCCCCCHHHHHhhh
Q 008615          537 FIVRTVPETKGLSLEEIESKI  557 (559)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~  557 (559)
                      +.+ ++||+++++++|++++.
T Consensus       493 ~T~-l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  493 FTL-LIPETKGKSLEEISNEE  512 (538)
T ss_pred             eeE-EeecccccCHHHhcChh
Confidence            654 46699999999986654

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=2.4e-32  Score=270.38  Aligned_cols=351  Identities=18%  Similarity=0.152  Sum_probs=249.6

Q ss_pred             cccccccccccc-cCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---
Q 008615          116 DIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---  191 (559)
Q Consensus       116 ~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---  191 (559)
                      ..+...+.+|.. .++       +|.+..++|++.+++.+++.++++++|+++||+|||++++.+.++..++.+.+.   
T Consensus        30 ~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~  102 (392)
T PRK12382         30 TVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAA  102 (392)
T ss_pred             HHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhh
Confidence            344555555543 334       899999999999999999999999999999999999999999888777654332   


Q ss_pred             h-----chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHH
Q 008615          192 Y-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY  266 (559)
Q Consensus       192 ~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f  266 (559)
                      +     .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++++.+.. |||+.+
T Consensus       103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~  181 (392)
T PRK12382        103 ILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALA  181 (392)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHH
Confidence            2     3588999999999999999999999999999999999999999999999999999999999988777 999887


Q ss_pred             hhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccccc
Q 008615          267 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE  346 (559)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (559)
                      ++..+..++........||.+.         +                    + +.                       +
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~---------~--------------------~-~~-----------------------~  208 (392)
T PRK12382        182 LTTMVLPLLAWAFNGTVRKVPA---------H--------------------A-GE-----------------------R  208 (392)
T ss_pred             HHHHHHHHHHHHHHHhccCCCC---------C--------------------c-cc-----------------------C
Confidence            7665554433332222222110         0                    0 00                       0


Q ss_pred             ccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 008615          347 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR  426 (559)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  426 (559)
                      .+.++.++.  .+...+...+...    .......+.+.++++.+.+.   .+.......++.+++.++.|++.||+++|
T Consensus       209 ~~~~~~~~~--~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~  279 (392)
T PRK12382        209 PSLWSVVGL--IWKPGLGLALQGV----GFAVIGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGV  279 (392)
T ss_pred             chHHHHHHH--HHHhHHHHHHHHH----HHhHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            001111110  1111111111111    12234556677777766543   45556667778889999999999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHH
Q 008615          427 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI  506 (559)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i  506 (559)
                      +.+..+..+.+++.+++...     .+.+..+....+. +.......+.......|.+|+++|+++.|+.+....+|..+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i  353 (392)
T PRK12382        280 KVAIVSLLVETVGLLLLWLA-----PTAWVALAGAALT-GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV  353 (392)
T ss_pred             eehHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887777776654431     2223222222222 22222233444466678889999999999999999999999


Q ss_pred             HHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhc
Q 008615          507 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV  542 (559)
Q Consensus       507 ~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (559)
                      +|.+.|.+.|..|+...|.+.+++.+++.++.+...
T Consensus       354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998888887777665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=4.1e-33  Score=279.41  Aligned_cols=371  Identities=13%  Similarity=0.104  Sum_probs=256.3

Q ss_pred             cccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHH
Q 008615          120 TSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL  199 (559)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  199 (559)
                      ++..++.+..+       +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++++++++.+
T Consensus        38 ~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l  110 (455)
T TIGR00892        38 VTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIEL  110 (455)
T ss_pred             hhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence            34455555555       99999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HH-HHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHH
Q 008615          200 LV-GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       200 ~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~  278 (559)
                      ++ .|+++|++.+...+....++.++++ ++|++++++...+..+|..++|++++.+.+.. |||+.|++.+++.++..+
T Consensus       111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCV  188 (455)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence            75 5799999999877777888899995 78999999999999999999999999988877 999999999988876655


Q ss_pred             Hhhcc-CCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCc
Q 008615          279 GMWSL-PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN  357 (559)
Q Consensus       279 ~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (559)
                      ..+++ ++.+....           .+.++ .   +......  .. ....        .....++..+....++++++.
T Consensus       189 ~~~~~~~~~~~~~~-----------~~~~~-~---~~~~~~~--~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~  242 (455)
T TIGR00892       189 CGALMRPVGPSQRV-----------SKSKS-K---EGLPPDG--ST-KKLS--------KKSTAEKINRFLDFSLFTHRG  242 (455)
T ss_pred             HHHHhCCCCccccc-----------ccccc-c---ccCCCCC--cc-cccc--------ccchhhhhhhhcchHHhcCch
Confidence            54443 22111000           00000 0   0000000  00 0000        000000000111124677777


Q ss_pred             hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCcchhhhhH--
Q 008615          358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGV--  433 (559)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~--  433 (559)
                      ++...+..++..+..    .....+.+.++++.+++. ..++....+.+++.++++++.+++.||.  ++++......  
T Consensus       243 ~~~~~~~~~l~~~~~----~~~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  317 (455)
T TIGR00892       243 FLVYLSGNVIMFLGF----FAPIIFLVPYAKDKGVDE-YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL  317 (455)
T ss_pred             HHHHHHHHHHHHHHc----cchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence            665554443333322    235567788888888876 7888899999999999999999999974  3333333322  


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 008615          434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP  513 (559)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~  513 (559)
                      ++.+++.+++..     ..+.+. +....+..++......+...+++.|.+|++++++++|+.+....+|.+++|.+.|.
T Consensus       318 ~~~~l~~ll~~~-----~~~~~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~  391 (455)
T TIGR00892       318 LFNGLTHLLCAL-----AGDYTG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR  391 (455)
T ss_pred             HHHHHHHHHHHH-----hchHHH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence            222222222211     122332 22333333333334445556778899999999999999999999999999999999


Q ss_pred             HHHhcC-chhhHHHHHHHHHHHHH
Q 008615          514 LKELLG-AENIFLLFAAIAFLAVL  536 (559)
Q Consensus       514 l~~~~g-~~~~~~~~~~~~~~~~~  536 (559)
                      +.+..| +...|++.+++.+++.+
T Consensus       392 l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       392 LVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eehhcCCcchHHHHhhHHHHHHHH
Confidence            999885 87888887776666554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=2e-32  Score=275.89  Aligned_cols=362  Identities=14%  Similarity=0.114  Sum_probs=239.2

Q ss_pred             ccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhH
Q 008615          119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV  198 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  198 (559)
                      ...+..+.+.++       +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.
T Consensus        54 ~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~  126 (476)
T PLN00028         54 AAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATG  126 (476)
T ss_pred             HHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            344556666655       9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc----CC----CCcchHHHhhhH
Q 008615          199 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI----NA----VGGWRYMYGLSA  270 (559)
Q Consensus       199 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~----~~----~~~wr~~f~~~~  270 (559)
                      ++++|+++|++.+... ....++.|++|+++|++++++.....++|..+++.+.+.+.    ..    ..|||+.|++.+
T Consensus       127 l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g  205 (476)
T PLN00028        127 FIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG  205 (476)
T ss_pred             HHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            9999999999988654 45667899999999999999998877777777766554432    11    128999999999


Q ss_pred             HHHHHHHHHhhccCC-chHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccc
Q 008615          271 PLALLMGIGMWSLPP-SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF  349 (559)
Q Consensus       271 ~~~~~~~~~~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (559)
                      +++++..++.+++++ .|+              ++.++.+       ++.+                   .++.+....+
T Consensus       206 ~l~l~~~l~~~~~~~~~p~--------------~~~~~~~-------~~~~-------------------~~~~~~~~~~  245 (476)
T PLN00028        206 LLHIIMGILVLTLGQDLPD--------------GNYRELK-------KSGT-------------------MPKDSFSKVL  245 (476)
T ss_pred             HHHHHHHHHHHHHcCcCCC--------------CchhhHH-------hcCc-------------------cccccHHHHH
Confidence            988877666655543 221              0000000       0000                   0000001124


Q ss_pred             hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-
Q 008615          350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-  427 (559)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-  427 (559)
                      ++.++++..+...+..++.....    ..+..+.|.++.+ .|++. ..++.+.....++.++++++.|+++||++||+ 
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~  320 (476)
T PLN00028        246 RYGVTNYRTWILALTYGYSFGVE----LTMDNIIAEYFYDRFGLSL-ETAGAIAASFGLMNLFARPAGGYLSDVAARRFG  320 (476)
T ss_pred             HHHHcCchhHHHHHHHHHHHHHH----HHHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence            55667776665544333322222    2355567777654 57776 77888999999999999999999999998652 


Q ss_pred             ----h--hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHH
Q 008615          428 ----L--LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF  501 (559)
Q Consensus       428 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  501 (559)
                          .  .....++.++.++++..     ..+....+...+++..+...+ .+..+.+..+..| +.+|++.|+.+..+.
T Consensus       321 ~~~r~~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~  393 (476)
T PLN00028        321 MRGRLWALWIVQTLGGVFCIWLGR-----ANSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGN  393 (476)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhcccc
Confidence                1  11122222222221111     122222222222222222222 2233455666654 789999999888777


Q ss_pred             HHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhh
Q 008615          502 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       502 ~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      +|+.+++.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus       394 lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        394 VGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            77777776654 1123357788888887877776655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.7e-32  Score=273.16  Aligned_cols=375  Identities=16%  Similarity=0.148  Sum_probs=255.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc----hhHhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~  213 (559)
                      +|++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++.    .+++.+++.|++.|++.+..
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~  135 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG  135 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence            68999999999999999999999999999999999999999999999998888764    46778889999999999999


Q ss_pred             hhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHH-HhhccCCchHHHHH
Q 008615          214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLL  292 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~  292 (559)
                      .+.....+.|++|+++|++++++++.+..+|..+++.+.+.......+||+.|++.++++++..+ ..+++||+|+....
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            99899999999999999999999999999999999887765444323899999999888877554 44567777642100


Q ss_pred             hhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHH
Q 008615          293 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQ  372 (559)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (559)
                      +        +  .++       .+.+.+.+..      +   + .+. +.+.+....+.++|++.++...+...+.....
T Consensus       216 ~--------~--~~~-------~~~~~~~~~~------~---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T TIGR00712       216 P--------P--IEE-------YRNDYPDDYN------E---K-AEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLR  267 (438)
T ss_pred             C--------C--chh-------cccccccccc------c---c-ccc-ccchHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            0        0  000       0000000000      0   0 000 00000001123667777776654443333322


Q ss_pred             hhChhhHHHhHHHHHHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc
Q 008615          373 ITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG  451 (559)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (559)
                          ..+..|.|.++++. |.+. ..+++...+..+..+++.++.|++.||+++++....+.....+.............
T Consensus       268 ----~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T TIGR00712       268 ----YGVLDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA  342 (438)
T ss_pred             ----HHHHHhHHHHHHHccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC
Confidence                34667889998874 6665 67888888888999999999999999996544333332222221111111111111


Q ss_pred             CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHH-HHHHHhhHHHHHhcCchhhHHHHHHH
Q 008615          452 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLGAENIFLLFAAI  530 (559)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~i~g~l~~~~g~~~~~~~~~~~  530 (559)
                      .+.+.... ..+..+....+..........|.+|++.|+++.|+.+..+++++ +++|.+.|.+.|..|+...+.+.+++
T Consensus       343 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~  421 (438)
T TIGR00712       343 GNPLVDMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  421 (438)
T ss_pred             CchHHHHH-HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHH
Confidence            12222221 12222221111111212356788999999999999998888775 68999999999999999999888888


Q ss_pred             HHHHHHHHHhhccCCC
Q 008615          531 AFLAVLFIVRTVPETK  546 (559)
Q Consensus       531 ~~~~~~~~~~~~~~~~  546 (559)
                      .+++.++.++..+|.|
T Consensus       422 ~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       422 SILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            8888887777777655

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.3e-31  Score=265.41  Aligned_cols=377  Identities=17%  Similarity=0.131  Sum_probs=260.9

Q ss_pred             hhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 008615           96 WSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE  175 (559)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~  175 (559)
                      +...........+..++..++.....+.+|.+.++       ++.+..+.++..+++.++++++++++|+++||+|||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~   83 (413)
T PRK15403         11 HAATLFFPMALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV   83 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH
Confidence            33334444445666677777888888888887766       99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          176 LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       176 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      ++.+.+++++++++++++++++.++++|+++|++.+...+....++.|++++++|++++++...+..+|..+||++++.+
T Consensus        84 l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l  163 (413)
T PRK15403         84 LITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL  163 (413)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877777888899999999999999999999999999999999998


Q ss_pred             cCCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Q 008615          256 INAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV  334 (559)
Q Consensus       256 ~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (559)
                      .+.. |||+.|++.+++.++..+.. +++||+++.   +   ++                     +.+            
T Consensus       164 ~~~~-gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~---~~---------------------~~~------------  203 (413)
T PRK15403        164 MHFV-HWKVLFAIIAVMGLIAFVGLLLAMPETVKR---G---AV---------------------PFS------------  203 (413)
T ss_pred             HHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCccc---c---CC---------------------CCC------------
Confidence            8776 99999999998887766553 457775420   0   00                     000            


Q ss_pred             HhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCCCchhHHHHHHHHHHHHHHHH
Q 008615          335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMT  413 (559)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  413 (559)
                             .+.....+++++|+|.++...+...+.....    ..+..+.|.++++. +.+. .+.++.......+.+++.
T Consensus       204 -------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~gl~~~~~~~~~~i~~  271 (413)
T PRK15403        204 -------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPM----MSWVAVSPVILIDAGGMTT-SQFAWTQVPVFGAVIVAN  271 (413)
T ss_pred             -------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHhChHHHHHhcCCCH-HHHHHHHHHHHHHHHHHH
Confidence                   0000113556778877776555444433332    24555678887765 5665 778888888888888888


Q ss_pred             HHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHH
Q 008615          414 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI  493 (559)
Q Consensus       414 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  493 (559)
                      .+.+++.++..+++.......+..++..++........+..+..+...++...+.+.. .|......-.. ....+|++.
T Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~-~p~~~~~al~~-~~~~~G~a~  349 (413)
T PRK15403        272 AIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI-FPTLFRFTLFS-NNLPKGTVS  349 (413)
T ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH-hHHHHHHHhcc-CCCCCcHHH
Confidence            8888876555444443333223333333222211011122211222222232222222 22222111111 223479999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHH
Q 008615          494 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA  534 (559)
Q Consensus       494 g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  534 (559)
                      ++.+.....+..+++...+++.+. +....|...++++.+.
T Consensus       350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence            999999999999999999888776 5556666555554443

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.1e-31  Score=272.28  Aligned_cols=389  Identities=19%  Similarity=0.186  Sum_probs=271.7

Q ss_pred             HHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 008615          107 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALG  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  186 (559)
                      +++.++..++...+.+.+|.+.++       +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         16 AFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            344566677777777778877766       9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHH
Q 008615          187 ALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY  266 (559)
Q Consensus       187 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f  266 (559)
                      .++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998877 999999


Q ss_pred             hhhHHHHHHHHHHhh-ccCCchHHHHHhhccCCCchhhhHHHHHHHHH---hhcCCCCCCchhhHHHHHH---------H
Q 008615          267 GLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALG---KLRRRPPGDKLSERQIEDT---------L  333 (559)
Q Consensus       267 ~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~  333 (559)
                      ++..++.++..++.. ..|+.+.      ...|.+..+..........   ...+...... ........         .
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  240 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTM------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGL-SPLAIAGLVAVGVVALLL  240 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc-chHHHHHHHHHHHHHHHH
Confidence            998887776655543 3444321      0011111111100000000   0011111000 00000000         0


Q ss_pred             HHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHH
Q 008615          334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM  412 (559)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  412 (559)
                      ...++. +.+++.. ..+++|++.++...+..++..+..    .....+.|++++. .|.+. ...++......++.+++
T Consensus       241 ~~~~~~-~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~  313 (471)
T PRK10504        241 YLLHAR-NNNRALF-SLKLFRTRTFSLGLAGSFAGRIGS----GMLPFMTPVFLQIGLGFSP-FHAGLMMIPMVLGSMGM  313 (471)
T ss_pred             HHHHHh-cCCCCcc-CHHHhcccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHH
Confidence            000011 1111112 235788887776655444443332    2455677888875 66665 78888888888888889


Q ss_pred             HHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhH
Q 008615          413 TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG  492 (559)
Q Consensus       413 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  492 (559)
                      .++.+++.||+++|+++..+..+.++...++....   ............+..+.......+....+..+.+|++.++.+
T Consensus       314 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  390 (471)
T PRK10504        314 KRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA---LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSG  390 (471)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccch
Confidence            89999999999999999888877777666554321   111222122222222222222223334667788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhcCc
Q 008615          493 ISLAVLTNFGSNAIVTFAFSPLKELLGA  520 (559)
Q Consensus       493 ~g~~~~~~~~g~~i~~~i~g~l~~~~g~  520 (559)
                      .|+.++...+|..+++.+.|.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999888775

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=5.2e-32  Score=269.34  Aligned_cols=375  Identities=23%  Similarity=0.280  Sum_probs=260.1

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  185 (559)
                      ..+..+..+++........|.+.++       +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        22 SFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            3334455666666666666766665       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      +.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.. +||+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~  173 (398)
T TIGR00895        95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSL  173 (398)
T ss_pred             HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988877 99999


Q ss_pred             HhhhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615          266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK  344 (559)
Q Consensus       266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (559)
                      |++.+++.++..+ ..+++||++++...+          +.++..+..++.......+....  .      .+++.+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~  235 (398)
T TIGR00895       174 FYVGGIAPLLLLLLLMRFLPESIDFLVSK----------RPETVRRIVNAIAPQMQAEAQSA--L------PEQKATQGT  235 (398)
T ss_pred             hhhhhhHHHHHHHHHHHhCCCCChHHHhc----------CHHHHHHHHHHHHHhcccccccc--c------cccccccch
Confidence            9998766555444 446688887654332          01111111111111100000000  0      000000000


Q ss_pred             ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008615          345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG  424 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  424 (559)
                      .+...+.+++++..+...... +..+...........+.|.+.++.+.+. ...+.......++.+++.++.+++.||++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (398)
T TIGR00895       236 KRSVFKALFQGKTARITVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLG  313 (398)
T ss_pred             hhHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            111122233333223222222 2222223333456677887888888876 77888889999999999999999999999


Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHH
Q 008615          425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN  504 (559)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  504 (559)
                      +|+.. ....+.++...++...    ..+.+..+...++ .+.......+...++..|.+|++.|+++.|+.+.+..+|.
T Consensus       314 ~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  387 (398)
T TIGR00895       314 PRVTA-LLLLLGAVFAVLVGST----LFSPTLLLLLGAI-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA  387 (398)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHH----hhCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            98443 3333333333333221    1223333333333 3333333445566889999999999999999999999999


Q ss_pred             HHHHHhhHHH
Q 008615          505 AIVTFAFSPL  514 (559)
Q Consensus       505 ~i~~~i~g~l  514 (559)
                      .++|.+.|.+
T Consensus       388 ~~g~~~~G~l  397 (398)
T TIGR00895       388 IIGPILAGYL  397 (398)
T ss_pred             HHHHHhHHhc
Confidence            9999998875

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=8e-32  Score=274.96  Aligned_cols=395  Identities=17%  Similarity=0.198  Sum_probs=279.2

Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 008615          103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~  182 (559)
                      +..++++.++..++....+..+|.+..+       +|.+..+.+|+.+.+.++..++.++.|+++||+|||++++++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            3455566777888888888888888877       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 008615          183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW  262 (559)
Q Consensus       183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~w  262 (559)
                      ++++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.+.. +|
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w  155 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HW  155 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998887 99


Q ss_pred             hHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHH--HHHH-HhhcCCCCCCchhhHHHHHHH-----
Q 008615          263 RYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQA--ISAL-GKLRRRPPGDKLSERQIEDTL-----  333 (559)
Q Consensus       263 r~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-----  333 (559)
                      |+.|++.++++++..++. +++||+++     +..++.+..+..-..  .... ......++.+..+........     
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       156 RWIFLINVPIGIIVVVVAFFILPRDKP-----AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             eehhhhhhHHHHHHHHHHHHHcCCccc-----cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence            999999888877765554 44565432     000111110000000  0000 001111111111111110000     


Q ss_pred             ---HHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHH
Q 008615          334 ---VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFK  409 (559)
Q Consensus       334 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  409 (559)
                         .....+. +.+++....++++++.++...+..++..+..+    ....+.|.++++ .|.++ .+++....+..++.
T Consensus       231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~s~-~~~g~~~~~~~~~~  304 (485)
T TIGR00711       231 AIIAFVVWEL-TDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLY----GSFYLLPLYLQQVLGYTA-LQAGLHILPVGLAP  304 (485)
T ss_pred             HHHHHHHHHH-cCCCCccCHHHHcCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence               0000000 11111222457788877766555444444332    456678888876 46665 78899999999999


Q ss_pred             HHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccch
Q 008615          410 LVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR  489 (559)
Q Consensus       410 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  489 (559)
                      +++.++.|++.||++||+.+..+..+.+++..++..... .....+.......+.+.+.+....+.. ....+..|++++
T Consensus       305 ~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~  382 (485)
T TIGR00711       305 MLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKI  382 (485)
T ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHH
Confidence            999999999999999999988888777777666552111 111222222222222222222223333 455677899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Q 008615          490 GRGISLAVLTNFGSNAIVTFAFSPLKELL  518 (559)
Q Consensus       490 ~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  518 (559)
                      +++.|+.++.+.+|+.+++.+.+.+.++.
T Consensus       383 g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       383 ARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.5e-31  Score=266.72  Aligned_cols=369  Identities=18%  Similarity=0.129  Sum_probs=261.8

Q ss_pred             HhhhcccccccccccccccCCCCCCccccccchhH-----HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQ-----LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA  184 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  184 (559)
                      .++.++......+.+|.+.++       +|++..+     .|++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         23 CFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            445555555666677777655       7777544     5899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchH
Q 008615          185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY  264 (559)
Q Consensus       185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~  264 (559)
                      ++.++++++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.+++|.+++.+.+.. +||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~  173 (408)
T PRK09874         96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLRP  173 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHH
Confidence            999999999999999999999999865 56777888999999999999999999999999999999999988777 9999


Q ss_pred             HHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccc
Q 008615          265 MYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE  343 (559)
Q Consensus       265 ~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (559)
                      .|++.+++.++..+.. ++++|.++.             .+.++                  ..+               
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~------------------~~~---------------  207 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQP-------------VSKKE------------------MLH---------------  207 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccc-------------ccchh------------------hhH---------------
Confidence            9999988877665544 445553210             00000                  000               


Q ss_pred             cccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCch---hHHHHHHHHHHHHHHHHHHHHHHh
Q 008615          344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA---DATRVSVVIGVFKLVMTWIAVAKV  420 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~  420 (559)
                        ..+..+.++++.++...+...+....   .......+.+.+..+.+.....   ..+.+....+++.+++.+..|++.
T Consensus       208 --~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~  282 (408)
T PRK09874        208 --MREVVTSLKNPKLVLSLFVTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLG  282 (408)
T ss_pred             --HHHHHHhCcCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00012234455443322221111111   1112334455555554333211   234555666778888899999999


Q ss_pred             hhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHH
Q 008615          421 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN  500 (559)
Q Consensus       421 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  500 (559)
                      ||++||+.+..+..+..++.+.+...     .+.+...+ ..+..+.......+...++..+..|++.+|+.+++.+...
T Consensus       283 dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  356 (408)
T PRK09874        283 DRIGPEKILITALIFSVLLLIPMSFV-----QTPLQLGI-LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFR  356 (408)
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHh-----ccHHHHHH-HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHH
Confidence            99999999888777666555444321     22232222 2233333333344444466677788899999999999999


Q ss_pred             HHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          501 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       501 ~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      .+|..++|.+.|.+.+..|+...|.+.+++.+++.++.++..++
T Consensus       357 ~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        357 DIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988888887766654443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=2.7e-32  Score=268.06  Aligned_cols=349  Identities=15%  Similarity=0.095  Sum_probs=260.9

Q ss_pred             hhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 008615          111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  190 (559)
                      ++..+........+|....+       ++.+..+++++.+++.++..++++++|+++||+|||++++.+.++.+++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         9 LISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555       78899999999999999999999999999999999999999999999999888


Q ss_pred             Hhch-----hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          191 AYAP-----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       191 ~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      ++++     +++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++||.+++.+.+.. +||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            8887     99999999999999999999999999999999999999999999999999999999999988877 99999


Q ss_pred             HhhhHHHHHHHHHHhhcc--CCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccc
Q 008615          266 YGLSAPLALLMGIGMWSL--PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE  343 (559)
Q Consensus       266 f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (559)
                      |++.++..++..+..+.+  ||.++         +   +.                  ++.+...             .+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~------------------~~~~~~~-------------~~  197 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPELAA---------S---EI------------------QALSNAV-------------LR  197 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCC---------c---cc------------------cccchhH-------------HH
Confidence            999887776655544433  22111         0   00                  0000000             00


Q ss_pred             cccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008615          344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD  422 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  422 (559)
                      +....++.++|++.++...+...+..+....   ....+.|.+.++ .+.+. .+.+.......++.+++.++.+++.||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (365)
T TIGR00900       198 DTREGIKFVLKNPLLRTLLLLALLFNLVFAP---AIVALFPYVQSKYLGRGS-THYGWVLAAFGLGALLGALLLGLLGRY  273 (365)
T ss_pred             HHHhHHHHHHcCcHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011245567777666555544443333221   223567777776 56666 778888999999999999999999999


Q ss_pred             cCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 008615          423 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG  502 (559)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  502 (559)
                      ++|++.+..+..+.+++...+...    ..+ ........+..++......+...++..|.+|++.|+++.|+.+....+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (365)
T TIGR00900       274 FKRMALMTGAIFVIGLAILVVGLT----PPN-FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA  348 (365)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHhh----chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            999998887766666665555432    111 222233333333433344556668889999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHhcC
Q 008615          503 SNAIVTFAFSPLKELLG  519 (559)
Q Consensus       503 g~~i~~~i~g~l~~~~g  519 (559)
                      +..+++.+.|.+.|..|
T Consensus       349 ~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       349 AWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            99999999999998764

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-31  Score=259.46  Aligned_cols=363  Identities=21%  Similarity=0.239  Sum_probs=274.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch--hHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      ++.+..+-+++.+.+++|+.+++++.|+++||||.|+++..+.++.++++++..++.  +++.+++.|++||++.|..+|
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p  147 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP  147 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence            899999999999999999999999999999999999999999999999999999875  556789999999999999999


Q ss_pred             hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhh-ccCCchHHHHHhh
Q 008615          216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLRA  294 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~  294 (559)
                      +...+...|.|++||++..++..++..+|.+++.+++|++.+...||++.|++.++++++..++++ +..|+|..     
T Consensus       148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-----  222 (466)
T KOG2532|consen  148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-----  222 (466)
T ss_pred             hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-----
Confidence            999999999999999999999999999999999999999998834999999999999999888874 45566641     


Q ss_pred             ccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhh
Q 008615          295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT  374 (559)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (559)
                                                +......|.+...+...++..+++.+.+++++++++.+|..++..+....    
T Consensus       223 --------------------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~----  272 (466)
T KOG2532|consen  223 --------------------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW----  272 (466)
T ss_pred             --------------------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----
Confidence                                      01111111111111111111222257789999999988877765554444    


Q ss_pred             ChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--------c-hhhhhHHHHHHHHHHHH
Q 008615          375 GQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--------P-LLIGGVCGIALSLLLLS  444 (559)
Q Consensus       375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~-~~~~~~~~~~~~~~~~~  444 (559)
                      +...+..|.|.|+++ ++++- ...|++.++..+...+..+++|.++||+.+|        + .-.++....+++++.+.
T Consensus       273 ~~~~l~~y~PtY~~~VL~f~v-~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~  351 (466)
T KOG2532|consen  273 GFYLLLTYLPTYLKEVLGFDV-RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA  351 (466)
T ss_pred             HHHHHHHHhhHHHHHHhCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee
Confidence            344688999999987 45555 8899999999999999999999999998663        1 12233444444444444


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH---hcCch
Q 008615          445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---LLGAE  521 (559)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---~~g~~  521 (559)
                      +.   .....+..++.+.+..++.+....... .-..+. -+++.+..+|+.+.+..+.++++|.+.|.+..   ...|+
T Consensus       352 ~~---~~~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~  426 (466)
T KOG2532|consen  352 FT---SDEHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR  426 (466)
T ss_pred             ec---CCCcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence            32   122333334333333333333222221 223333 44889999999999999999999999999984   23588


Q ss_pred             hhHHHHHHHHHHHHHHHHhh
Q 008615          522 NIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~  541 (559)
                      ..|++.+++.+++.++..++
T Consensus       427 ~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  427 IVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHhchheeEe
Confidence            99999999988888655554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=4e-31  Score=261.66  Aligned_cols=344  Identities=16%  Similarity=0.185  Sum_probs=255.0

Q ss_pred             hhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 008615          111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  190 (559)
                      +..........+..|.+.++       +|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            34455566666777777666       99999999999999999999999999999999999999999999999999999


Q ss_pred             HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhH
Q 008615          191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA  270 (559)
Q Consensus       191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~  270 (559)
                      +++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.+
T Consensus        88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~  166 (385)
T TIGR00710        88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLS  166 (385)
T ss_pred             HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988877 9999999988


Q ss_pred             HHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccc
Q 008615          271 PLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF  349 (559)
Q Consensus       271 ~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (559)
                      ++.++..+.. ++.||+++.        +    ++                 ++                  .++....+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~--------~----~~-----------------~~------------------~~~~~~~~  199 (385)
T TIGR00710       167 LAGILLSALIFFILPETLPY--------E----AR-----------------IQ------------------ISTYFETF  199 (385)
T ss_pred             HHHHHHHHHHHHhCCCCCCC--------c----cc-----------------CC------------------HHHHHHHH
Confidence            8877765554 445654320        0    00                 00                  00001124


Q ss_pred             hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Q 008615          350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL  428 (559)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  428 (559)
                      ++.++++.++...+...+.....    .....+.|.+++ +.+.++ ...+.......++.+++.++.+++.||+++|+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  274 (385)
T TIGR00710       200 LLLLKSKMFWGYALIYGASFGGF----FAFFSGAPFVYIDIMGVSP-SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL  274 (385)
T ss_pred             HHHHcCchhHHHHHHHHHHHHHH----HHHHHcChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            45667776665554433333222    235556677665 566666 788888888999999999999999999999998


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 008615          429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT  508 (559)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~  508 (559)
                      +..+..+..++..++...... ....+..........+.......+....+..|..| +.++++.++.+.....++.+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~  352 (385)
T TIGR00710       275 LRMGLILFAVSAVLLEITAIL-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVG  352 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHH
Confidence            888777766666555433211 11222222222223333223333444466677776 6789999999988887777777


Q ss_pred             HhhHHHHH
Q 008615          509 FAFSPLKE  516 (559)
Q Consensus       509 ~i~g~l~~  516 (559)
                      .+.+.+.+
T Consensus       353 ~~~~~~~~  360 (385)
T TIGR00710       353 YLVSLIHG  360 (385)
T ss_pred             HHHHhccc
Confidence            77774433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=6.4e-31  Score=260.37  Aligned_cols=350  Identities=16%  Similarity=0.165  Sum_probs=245.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---h-chhHhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---Y-APGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~  213 (559)
                      +|.++.+.|++.+.+.+++.++++++|+++||+|||+++..+.++++++++++.   + .++++.+++.|+++|++.+..
T Consensus        43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~  122 (402)
T TIGR00897        43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF  122 (402)
T ss_pred             hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence            899999999999999999999999999999999999999999999998877653   3 357888999999999999888


Q ss_pred             hhhhhhhhhccCCcccchhhhhHHHHHHHHHH-HHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHH
Q 008615          214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGI-LLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLL  291 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~  291 (559)
                      .+...+.+.+++|+++|++++|+..++.++|. ++++++++.+.+.. ||+..+|......++..++. ++.++.++   
T Consensus       123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  198 (402)
T TIGR00897       123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNKDIFT---  198 (402)
T ss_pred             HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCC---
Confidence            88888889999999999999999999999997 68999998888777 87766665444433333333 33333211   


Q ss_pred             HhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHH
Q 008615          292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ  371 (559)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (559)
                           ++    .+ +          ++   .+                  .++.+..+++++|+|.++...+..++... 
T Consensus       199 -----~~----~~-~----------~~---~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  236 (402)
T TIGR00897       199 -----PQ----HM-Q----------TR---EK------------------FSELGKAATILFTNPNVLLGGMVRIINTI-  236 (402)
T ss_pred             -----cc----cc-c----------CC---cc------------------hhhHHHHHHHHHcChhHHHHHHHHHHHHH-
Confidence                 00    00 0          00   00                  00001123457777776655443333222 


Q ss_pred             HhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhh-hhHHHHHHHHHHHHHHHHhh
Q 008615          372 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI-GGVCGIALSLLLLSAYYKIL  450 (559)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  450 (559)
                         ....+..|.|.++++.|.+. .+.+.......++.+++.++.|+++||++||+.+. .+.+...++.+.+.......
T Consensus       237 ---~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  312 (402)
T TIGR00897       237 ---GLFGFAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF  312 (402)
T ss_pred             ---HHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence               23356778899998888877 66778778888999999999999999999888764 22333333322222211111


Q ss_pred             cCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHH
Q 008615          451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI  530 (559)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~  530 (559)
                      ..+.+..+. ..+..+.+.....+.. ....|..| ++|+++.|+.+....+++.++|.+.|.+.+..|+...+++.+++
T Consensus       313 ~~~~~~~~~-~~~~~G~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       313 GHSFAVALI-IAIALGIFLAGYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             CCcHHHHHH-HHHHHHHHHHHHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            112222222 2222222222233333 44556644 68999999999999999999999999999999998999988888


Q ss_pred             HHHHHHHHHh
Q 008615          531 AFLAVLFIVR  540 (559)
Q Consensus       531 ~~~~~~~~~~  540 (559)
                      .+++.++..+
T Consensus       390 ~~i~~~~~~~  399 (402)
T TIGR00897       390 YVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHH
Confidence            7777665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=5.5e-31  Score=261.48  Aligned_cols=341  Identities=19%  Similarity=0.182  Sum_probs=250.9

Q ss_pred             ccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch
Q 008615          115 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP  194 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  194 (559)
                      +....+.+.++.+.++       +|.++.+.+++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++++++
T Consensus        20 ~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         20 LATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            3445556666666655       999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHH
Q 008615          195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL  274 (559)
Q Consensus       195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~  274 (559)
                      +++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.+.. +||+.|++.+++.+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence            99999999999999998888888899999999999999999999999999999999999988877 99999999988888


Q ss_pred             HHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcc
Q 008615          275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ  354 (559)
Q Consensus       275 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (559)
                      +..+..++++|+++.             ++                                     +++++.+++++++
T Consensus       172 ~~~~~~~~~~~~~~~-------------~~-------------------------------------~~~~~~~~~~~~~  201 (401)
T PRK11043        172 LLILPTLRLKPSKKA-------------RK-------------------------------------QSQDALTFKQLLK  201 (401)
T ss_pred             HHHHHHHHcCCCCCc-------------cc-------------------------------------cchHHHHHHHHHc
Confidence            776666555554310             00                                     0000112455666


Q ss_pred             cCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHH
Q 008615          355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC  434 (559)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  434 (559)
                      ++.++...+...+.....    ..+..+.|.++++.+++. ...++......++.+++.++.+++.||+++|+.......
T Consensus       202 ~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~  276 (401)
T PRK11043        202 SKTYLGNVLIFAACSAAF----FAWLTGSPFILEQMGYSP-ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLV  276 (401)
T ss_pred             ChhHHHHHHHHHHHHHHH----HHHHHHhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            666554433332222221    235567788888888876 677887888888899999999999999999887666555


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 008615          435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL  514 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l  514 (559)
                      +.+++.+.+...........+..+....+. ++......+.......+..| +.++++.|+.+.....++..++.+.|.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        277 LFAVSVIAIWLASLLSHPSLVPLLIPFCVM-AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            554444333322111112222222222222 22223334444455556666 6799999999999999999999999999


Q ss_pred             HHhcCc
Q 008615          515 KELLGA  520 (559)
Q Consensus       515 ~~~~g~  520 (559)
                      .+....
T Consensus       355 ~~~~~~  360 (401)
T PRK11043        355 ISTPLL  360 (401)
T ss_pred             cCCChh
Confidence            875433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.8e-32  Score=270.80  Aligned_cols=372  Identities=19%  Similarity=0.116  Sum_probs=257.5

Q ss_pred             hhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 008615          111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  190 (559)
                      +...++...++...|.+.++       +|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   77 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF   77 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence            33444555566666666655       89999999999999999999999999999999999999999999999999999


Q ss_pred             HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHH-HhhhcccCCCCcchHHHhhh
Q 008615          191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY-FVGSFQINAVGGWRYMYGLS  269 (559)
Q Consensus       191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~l~~~l~~~~~~wr~~f~~~  269 (559)
                      +++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+.. +||+.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~  156 (379)
T TIGR00881        78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVP  156 (379)
T ss_pred             HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999 5666666655 999999998


Q ss_pred             HHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccccccc
Q 008615          270 APLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS  348 (559)
Q Consensus       270 ~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (559)
                      +++.++..+.. ++.+|+|+....+   ++  .+.+.++           .+.+.            .+++.+.+..+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~-----------~~~~~------------~~~~~~~~~~~~~  208 (379)
T TIGR00881       157 GIIAIIVSLICFLLLRDSPQSCGLP---PA--EEMPNEE-----------PDGDA------------EKKEEELTKKQIF  208 (379)
T ss_pred             HHHHHHHHHHHheeeCCCccccccC---cc--ccCcccc-----------ccccc------------ccccccccchHHH
Confidence            88777654444 5566655310000   00  0000000           00000            0000001111223


Q ss_pred             chhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 008615          349 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP  427 (559)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  427 (559)
                      .+++++++.++...+...+.....    ..+..+.|.++.+ .+.+. .+.+.......++.+++.++.+++.||..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  283 (379)
T TIGR00881       209 LQYVLLNKVLWYISLGYVFVYVVR----TGILDWSPLYLTQEKGFSK-EKASWAFTLYELGGLVGTLLAGWLSDKLFNGR  283 (379)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence            456677777666555444443333    2456677777755 56665 78888899999999999999999999864433


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHH
Q 008615          428 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV  507 (559)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~  507 (559)
                      ...............+...... ............+..+....+..+....+..|.+|++.|+++.|+.+....+|+.++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~  362 (379)
T TIGR00881       284 RGPLAVFFMALIIVSLLVYWLN-PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILA  362 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhh
Confidence            2222222222111111111110 111122222222233333333333444677899999999999999999999999999


Q ss_pred             HHhhHHHHHhcCchhhH
Q 008615          508 TFAFSPLKELLGAENIF  524 (559)
Q Consensus       508 ~~i~g~l~~~~g~~~~~  524 (559)
                      |.+.|.+.|..|++..|
T Consensus       363 ~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       363 GLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhHHHHHHhhcccccC
Confidence            99999999999886543

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=6.4e-31  Score=259.14  Aligned_cols=360  Identities=16%  Similarity=0.115  Sum_probs=256.2

Q ss_pred             Hhhhcccccccccccccc-cCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGA  187 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~  187 (559)
                      .++.++..+...+.++.. .++       +|.+..++|++.+++.+...+.+++.|+++||+||||.++ .+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~   78 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC   78 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            345555556666666653 344       8999999999999999999999999999999999988765 4666667788


Q ss_pred             HHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhh--hhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          188 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL--ISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       188 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      ++++++++++.+++.|+++|.+.+...|...+++.|+.++++|++.  .++...+.++|.++|+.+++.+.+.. +||+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~  157 (375)
T TIGR00899        79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVM  157 (375)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHH
Confidence            8899999999999999999988888888888889999887777654  67888889999999999999988877 99999


Q ss_pred             HhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615          266 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK  344 (559)
Q Consensus       266 f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (559)
                      |++.+++.++..+.. +++||.|+....                         +                         +
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~-------------------------~  187 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPRGAPG-------------------------A-------------------------L  187 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCccc-------------------------c-------------------------c
Confidence            999998877766554 457776531000                         0                         0


Q ss_pred             ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                      +..+.++.++++.++...+...+.+...    .....+.|.++ ++.+.++ .+.+.......+..+++.++.|++.||+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~  262 (375)
T TIGR00899       188 TRLEVRGLLASRDTRLLFVACTLMWGCN----ILYIINMPLLIIHELGLPD-KLAGLMMGTAAGLEIPFMLLAGYLIKRF  262 (375)
T ss_pred             CcchhhhhhcCcchHHHHHHHHHHHHHH----HHHHhhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            0001223455555554444333332222    12334556665 4466665 6677777777777788889999999999


Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHH
Q 008615          424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS  503 (559)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  503 (559)
                      ++|+.+..+.++..+....+...     .+.+..... .+..+.......+....+..|..|+ +++++.++.+...++|
T Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g  335 (375)
T TIGR00899       263 GKRRLMLLAALAGVAFYTGLAAD-----NSLWALLML-QLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVG  335 (375)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHH
Confidence            99998877665544443333221     122222222 2222222222334455677888775 5679999999999999


Q ss_pred             HHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHH
Q 008615          504 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV  539 (559)
Q Consensus       504 ~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  539 (559)
                      ..++|.+.|.+.+..|++..+.+.+++.+++.++..
T Consensus       336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999888887777766543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.9e-33  Score=257.05  Aligned_cols=373  Identities=18%  Similarity=0.169  Sum_probs=257.3

Q ss_pred             hhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 008615           96 WSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE  175 (559)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~  175 (559)
                      ++...+.++++++..++...|...+......++..       +|++++..|++.+.+.+.+.+++|+.|+++|||.||++
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v  100 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV  100 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence            33344455667777899999988887766666654       99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          176 LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       176 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      +.+|.++|.++.++++++..||+++++|.+.|+|.+...|+.+++++|.+|..+|++++++++.+..+|..+|.+++..+
T Consensus       101 ~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  101 IAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCcchHHHhhhHHHHHHHHHHhhc-cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Q 008615          256 INAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV  334 (559)
Q Consensus       256 ~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (559)
                      .+....|||.|++.+++++++.++.++ .+|++|-              ..++       .++.+..             
T Consensus       181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg--------------a~~~-------~~~~~~~-------------  226 (493)
T KOG1330|consen  181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG--------------ARDE-------VDGENKM-------------  226 (493)
T ss_pred             ccCccceEEEEEeehHHHHHHHHHHHhhccCcccc--------------cccc-------cccCCcC-------------
Confidence            887745999999999999998877754 5554430              0000       0000000             


Q ss_pred             HhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH----HcCCCCchhHHHHHHHHHHHHH
Q 008615          335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ----SAGFSAAADATRVSVVIGVFKL  410 (559)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  410 (559)
                          ........++.+.+.|++.+....+......+...    .+.+|.|.+..    -.+.+. ....++..+...++.
T Consensus       227 ----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G----s~sww~p~~~~~~~~~~~~~~-~~~~ifg~vt~~~G~  297 (493)
T KOG1330|consen  227 ----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG----SLSWWAPAFIYYSYELIGFDH-NATLIFGGVTCAGGS  297 (493)
T ss_pred             ----CCCccchHHHHHHHHccCceeeehHHHHHHHHhcc----ccchhhhhHHHHHHHHhCCcc-ccchhhhhHHHhhch
Confidence                00011112223444555555544444333333322    34455554432    244444 566677788888899


Q ss_pred             HHHHHHHHHhhhcCC----cchhhhhHHHHHHH---HHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeeccc
Q 008615          411 VMTWIAVAKVDDLGR----RPLLIGGVCGIALS---LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI  483 (559)
Q Consensus       411 ~~~~~~g~l~d~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (559)
                      +|.+++|.++||+.|    .....+..+..+.+   .+.+.++............+.+++++-...........-+..|+
T Consensus       298 lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~v  377 (493)
T KOG1330|consen  298 LGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEV  377 (493)
T ss_pred             hhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEe
Confidence            999999999999432    12222222211111   11111111111222222222222222222222233444677899


Q ss_pred             CCccchhhHHHHHHHHHH-HHHHHHHHhhHHHHHhc
Q 008615          484 FPLRTRGRGISLAVLTNF-GSNAIVTFAFSPLKELL  518 (559)
Q Consensus       484 ~p~~~~~~~~g~~~~~~~-~g~~i~~~i~g~l~~~~  518 (559)
                      +|++.|.+++++...+.. .|.+-+|++.|.+.|+.
T Consensus       378 V~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  378 VPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             cCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            999999999999887744 45566666999998864

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.4e-31  Score=243.49  Aligned_cols=349  Identities=19%  Similarity=0.208  Sum_probs=277.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHh---HHHHHHHHHHhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG---VLLVGRLLYGLGIGLAM  214 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~  214 (559)
                      +|+|+.|.+++.++..+..++..++.|.+.||||.|++..+++++..+-.+..+++.+++   ++++++.+.|++.+ .+
T Consensus        44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sF  122 (417)
T COG2223          44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SF  122 (417)
T ss_pred             cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-ee
Confidence            999999999999999999999999999999999999999999999999999999986554   99999999999765 78


Q ss_pred             hhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCc---chHHHhhhHHHHHHHHHHh-hccCCchHHH
Q 008615          215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG---WRYMYGLSAPLALLMGIGM-WSLPPSPRWL  290 (559)
Q Consensus       215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~---wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~  290 (559)
                      .+....++.|||++++|.++|+.. ..|+|..+...++..+.... +   ||....+..+..++..++. +.+.|.|...
T Consensus       123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r  200 (417)
T COG2223         123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR  200 (417)
T ss_pred             hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence            889999999999999999999999 99999999999988888777 6   9999999888888866665 4455555310


Q ss_pred             HHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccccc-ccchhhcccCchhHHHHHHHHHH
Q 008615          291 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE-GSFLEVFQGPNLKAFIIGGGLVL  369 (559)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  369 (559)
                      .                                                 ..++.. .+++.++++++.|.+.+.+...+
T Consensus       201 ~-------------------------------------------------~~~~~~~~~~~~v~~~~~~W~lsllY~~tF  231 (417)
T COG2223         201 A-------------------------------------------------SVKPQLPAQLKAVFSNKDTWLLSLLYFATF  231 (417)
T ss_pred             c-------------------------------------------------cccccchhHHHHHhcCcchHHHHHHHHHHH
Confidence            0                                                 000111 34667788888887775554444


Q ss_pred             HHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHH
Q 008615          370 FQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK  448 (559)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (559)
                      .    ++..+..++|.++++ ++.++ ..++.......+.+.+.+.++|+++||+|.+|.+...+..++++..++.....
T Consensus       232 G----~Fvgfs~~l~~~~~~~fg~~~-~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~  306 (417)
T COG2223         232 G----GFVGFSAYLPMYLVTQFGLSP-VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT  306 (417)
T ss_pred             H----HHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence            3    445688899988876 45555 88889999999999999999999999999999999999888888877775432


Q ss_pred             hhc--CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHH
Q 008615          449 ILG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFL  525 (559)
Q Consensus       449 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~  525 (559)
                      ...  .+....+..+.....+.+.+- ...+-++...+| ++.|.+.|+...++.+|++.-|...|...+..| +...|+
T Consensus       307 ~~~~~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~  384 (417)
T COG2223         307 GFGHGGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM  384 (417)
T ss_pred             ccccCcchHHHHHHHHHHHHHhccCc-chheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence            111  222333333333333444443 344577788877 578999999999999999999999999999999 778888


Q ss_pred             HHHHHHHHHHHHHHhhccCC
Q 008615          526 LFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~  545 (559)
                      ++..+.+++.++.+....+.
T Consensus       385 ~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         385 LLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            88888888888776655443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4e-31  Score=259.12  Aligned_cols=388  Identities=21%  Similarity=0.217  Sum_probs=265.5

Q ss_pred             cccchhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008615           91 QEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL  170 (559)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~  170 (559)
                      .++..++..+.++.+++...+....+...++.+...-    +.+|  .++...+.+++.++|+++++++.+++|.|.||+
T Consensus        35 ~~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g----~~ed--l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~  108 (495)
T KOG2533|consen   35 ERKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSG----LKED--LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF  108 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcC----Cccc--cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC
Confidence            3445566666667777777777777765555433322    2233  889999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHH
Q 008615          171 GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF  250 (559)
Q Consensus       171 Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  250 (559)
                      +..+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|++
T Consensus       109 ~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggl  188 (495)
T KOG2533|consen  109 PLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGL  188 (495)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHH
Confidence            99999999999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccc------CCCCcchHHHhhhHHHHHHHHHHh-hccCCchH--HHHHhhccCCCchhhhHHHHHHHHHhhcCCCCC
Q 008615          251 VGSFQI------NAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPR--WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG  321 (559)
Q Consensus       251 l~~~l~------~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (559)
                      ++..+.      ... ||||.|++.++++++..++. +++|+.|.  |+.           ++ +|.+-..++.+..+..
T Consensus       189 iA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl-----------~~-~ek~~~~~~~~~~~~~  255 (495)
T KOG2533|consen  189 IAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFL-----------TD-EEKELVVERLRESPSG  255 (495)
T ss_pred             HHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhcccc-----------ch-HHHHHHHHHHHhccCC
Confidence            998853      233 99999999999999877655 67899885  111           11 1111111112111111


Q ss_pred             CchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHH
Q 008615          322 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATR  400 (559)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  400 (559)
                      .                 ..++.++..+++.+++|..|.+.++.++....    .+.+.+|+|.++.+ .+++. .++..
T Consensus       256 ~-----------------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~-~~a~~  313 (495)
T KOG2533|consen  256 G-----------------IENKFKWKGFKEALKDPGVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSE-LQANL  313 (495)
T ss_pred             C-----------------cccccCHHHHHHHHhchhHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcCh-HHhcc
Confidence            1                 01114556788899999888777655444443    34688999999998 34666 88999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc----CCcchhhhhHHHHHHHH-HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccc
Q 008615          401 VSVVIGVFKLVMTWIAVAKVDDL----GRRPLLIGGVCGIALSL-LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI  475 (559)
Q Consensus       401 ~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (559)
                      +.++..++++++.+++|+++||+    .+|........+..+.. ..+..     ...... ....++..........++
T Consensus       314 ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~-----~~~~~~-~~~~~~~~~~~~~~~~~~  387 (495)
T KOG2533|consen  314 LSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA-----AAVLPG-AYGAFLIGPYGLIATAII  387 (495)
T ss_pred             ccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hccchH-HhHHHHhcchhhHHHHHH
Confidence            99999999999999999999994    44544444444433332 22221     111111 111122222222222334


Q ss_pred             cceeecccCCccch-hhHHHHHHHHHHHHHHHHHHhhHHH-HHhcCchhhHH
Q 008615          476 SWLMVSEIFPLRTR-GRGISLAVLTNFGSNAIVTFAFSPL-KELLGAENIFL  525 (559)
Q Consensus       476 ~~~~~~~~~p~~~~-~~~~g~~~~~~~~g~~i~~~i~g~l-~~~~g~~~~~~  525 (559)
                      .....++....+.+ -+..+........++.++|.+.-.. ...+++...|.
T Consensus       388 ~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~  439 (495)
T KOG2533|consen  388 ALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFY  439 (495)
T ss_pred             HHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHH
Confidence            44455555444433 3344444444555555555544332 23356666773

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=2.4e-30  Score=257.36  Aligned_cols=364  Identities=16%  Similarity=0.114  Sum_probs=253.8

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 008615          105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  184 (559)
                      ...+..+..+++....+...|.++++       +|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..++++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~  102 (438)
T PRK10133         30 LLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            33344566677777777777777655       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccC-C--
Q 008615          185 LGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-A--  258 (559)
Q Consensus       185 i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~--  258 (559)
                      ++.+++   +++++++.++++|+++|+|.|...+....++.|+.++++|.+.+++.+..+.+|..+|+.+++.+.. .  
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~  182 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999886   4688999999999999999999999999999998777777778999999999999999998875431 0  


Q ss_pred             ---------------C-------CcchHHHhhhHHHHH-HHHHH-hhccCCchHHHHHhhccCCCchhhhHHHHHHHHHh
Q 008615          259 ---------------V-------GGWRYMYGLSAPLAL-LMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGK  314 (559)
Q Consensus       259 ---------------~-------~~wr~~f~~~~~~~~-~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (559)
                                     .       .+||++|+....+.. +..++ ...+||.+.              ++          
T Consensus       183 ~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~--------------~~----------  238 (438)
T PRK10133        183 HQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--------------DN----------  238 (438)
T ss_pred             ccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------------cc----------
Confidence                           0       156666764333333 32222 222443211              00          


Q ss_pred             hcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HH-cCC
Q 008615          315 LRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QS-AGF  392 (559)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~  392 (559)
                        ..                    +.+........++++++|.++...+..++.....    .....|.+.++ ++ .|.
T Consensus       239 --~~--------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~g~  292 (438)
T PRK10133        239 --HS--------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGM  292 (438)
T ss_pred             --cc--------------------cccccchhhhHHHHHhCchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCCC
Confidence              00                    0000001122456778887765554433333322    23444666564 43 566


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccc
Q 008615          393 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISF  472 (559)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (559)
                      ++ ..+++......++.++|+++++++.||+++|+++..+.++..+.+++..+.     ... ..+..+. ..+++....
T Consensus       293 s~-~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~-l~glg~~~i  364 (438)
T PRK10133        293 TA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGH-VGLIALT-LCSAFMSIQ  364 (438)
T ss_pred             CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CCh-HHHHHHH-HHHHHHHHH
Confidence            66 889999999999999999999999999999999888766665554443321     111 2222222 333344445


Q ss_pred             ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHH
Q 008615          473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAV  535 (559)
Q Consensus       473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~  535 (559)
                      .|..++...+..|+ ..+.+.++..+ ..+|+.++|.+.|.+.|..| .+..|++...+.+...
T Consensus       365 ~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        365 YPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            56666778887774 46778888764 55788999999999999887 5667765444443333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=1.2e-30  Score=256.93  Aligned_cols=348  Identities=14%  Similarity=0.037  Sum_probs=245.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      ++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.+++++++++++++.+.   ++.|+++|++.+...|..
T Consensus        33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~  109 (393)
T PRK11195         33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAK  109 (393)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999888877664   788999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccC
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG  297 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~  297 (559)
                      .+++.|++|+++|++++++.+....+|.++||.+++++.+.  .|+..+++.+...++..+..+.+||+|....      
T Consensus       110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~------  181 (393)
T PRK11195        110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGARRP------  181 (393)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccc------
Confidence            99999999999999999999999999999999999998874  5888887776665555555566777653100      


Q ss_pred             CCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChh
Q 008615          298 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP  377 (559)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (559)
                      + + +.+..   .                 ..++.             +..++.+++++.++...+...+.+....    
T Consensus       182 ~-~-~~~~~---~-----------------~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~----  222 (393)
T PRK11195        182 G-Q-SWNPI---A-----------------LLRDF-------------FHACRVLWRDKLGRFSLAGTTLFWGAGA----  222 (393)
T ss_pred             c-c-CCCHH---H-----------------HHHHH-------------HHHHHHHHhCchhHHHHHHHHHHHHHHH----
Confidence            0 0 00000   0                 00000             0012456677766554443333222221    


Q ss_pred             hHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          378 SVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       378 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      ...+..+.++++ .+.++ .+.+......+++.+++.++.+++.||.++++.+..+. +.++....+..     ..+.+.
T Consensus       223 ~~~~~~~~~~~~~lg~s~-~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~-----~~~~~~  295 (393)
T PRK11195        223 TLRFLVLAWAPVALGITL-NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL-----QHSLLP  295 (393)
T ss_pred             HHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH-----HhHHHH
Confidence            233344445544 46665 78999999999999999999999999998888776664 33333222221     122222


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccc-hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV  535 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  535 (559)
                      ......+.+.+.+.. .+...+...+..|++. +|++.++.+..++++..++..+.+.+ +..|....+.+.+...+++.
T Consensus       296 ~~~~~~~~G~~~g~~-~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        296 AYPLLILIGALGGFF-VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             HHHHHHHHHHhhhhh-hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            222222232222222 3333466677766554 79999999999999999999998855 77888888777766666666


Q ss_pred             HHHHhhccC
Q 008615          536 LFIVRTVPE  544 (559)
Q Consensus       536 ~~~~~~~~~  544 (559)
                      .+.+.+..+
T Consensus       374 ~~~~~~~~~  382 (393)
T PRK11195        374 AMALLWRWH  382 (393)
T ss_pred             HHHHHHHHH
Confidence            655555433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.98  E-value=2.9e-30  Score=252.24  Aligned_cols=342  Identities=34%  Similarity=0.417  Sum_probs=281.3

Q ss_pred             HHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 008615          108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  187 (559)
                      +..+..+++.....+..+...++       +|.+..+.+++.+.+.++..++.+++|+++||+|||+.+..+.++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~   78 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGS   78 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHH
Confidence            33455566666666777777665       78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHh
Q 008615          188 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG  267 (559)
Q Consensus       188 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~  267 (559)
                      +++.++++++.++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+.. +||+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~  157 (352)
T cd06174          79 LLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFL  157 (352)
T ss_pred             HHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988877 8999999


Q ss_pred             hhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccc
Q 008615          268 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG  347 (559)
Q Consensus       268 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (559)
                      +.+++.++..+...+++                                                               
T Consensus       158 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  174 (352)
T cd06174         158 ILAILGLLLALLLLFLL---------------------------------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence            99888887766655431                                                               


Q ss_pred             cchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 008615          348 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR  426 (559)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  426 (559)
                              |.++...+..    +...........+.+.+.++. +.++ .+.+.......++.+++.++.+++.||++||
T Consensus       175 --------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  241 (352)
T cd06174         175 --------RLLLLLALAF----FLLSFGYYGLLTYLPLYLQEVLGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGRR  241 (352)
T ss_pred             --------HHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    1122222222    222233345677788888776 6665 7889999999999999999999999999999


Q ss_pred             c-hhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHH
Q 008615          427 P-LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA  505 (559)
Q Consensus       427 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~  505 (559)
                      + .+..+..+..++.+.+...     .+ ........+..+.......+....+..|..|+++|++.+|+.+....++..
T Consensus       242 ~~~~~~~~~~~~i~~~~~~~~-----~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (352)
T cd06174         242 RLLLLIGLLLAALGLLLLALA-----PS-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA  315 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-----cc-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence            9 8888888887777766642     22 233333444444444455667778999999999999999999999999999


Q ss_pred             HHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHH
Q 008615          506 IVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV  539 (559)
Q Consensus       506 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  539 (559)
                      +++.+.|.+.+..++...+.+.+++.+++.++.+
T Consensus       316 i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         316 LGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999998888887776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.98  E-value=3.4e-30  Score=254.97  Aligned_cols=344  Identities=17%  Similarity=0.186  Sum_probs=242.2

Q ss_pred             ccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhH
Q 008615          117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL  196 (559)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  196 (559)
                      .....+.+|.+.++       +|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.+++++
T Consensus        19 ~~~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~   91 (392)
T PRK10473         19 IDMYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS   91 (392)
T ss_pred             HHHHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH
Confidence            33444567776666       99999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHH
Q 008615          197 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM  276 (559)
Q Consensus       197 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~  276 (559)
                      +.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.+++.++.
T Consensus        92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~  170 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999877766 9999999998887776


Q ss_pred             HHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhccc
Q 008615          277 GIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG  355 (559)
Q Consensus       277 ~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (559)
                      .++. +++||++..        +   ++                 .+                    .......++.+++
T Consensus       171 ~~~~~~~~~~~~~~--------~---~~-----------------~~--------------------~~~~~~~~~~~~~  202 (392)
T PRK10473        171 LLLSLFILKETRPA--------R---AP-----------------AA--------------------SSKPRENSESLLN  202 (392)
T ss_pred             HHHHHHHcCCCCCc--------c---cC-----------------Cc--------------------cchHHHHHHHHhC
Confidence            5554 456664320        0   00                 00                    0000012234555


Q ss_pred             CchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHH
Q 008615          356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC  434 (559)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  434 (559)
                      +.++...+...+......    .+..+.|.++ ++.|.+. ...+......+++.+++.++.+++.||+++|+.+..+.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        203 RFFLSRLVITTLSVTVIL----TFVNTSPVLLMEQMGFSR-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHhCHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            554443333222222211    2334455555 4457766 678888888899999999999999999999999888887


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 008615          435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL  514 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l  514 (559)
                      +..++.+.+....     ..........+...+...+.. .  ....+..|.+.++   |.......++..+++.+.+.+
T Consensus       278 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l  346 (392)
T PRK10473        278 LFLAAGITLALSP-----SHAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWL  346 (392)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHH
Confidence            7777666655432     112222222222222222221 1  2223444544443   444455567777888888888


Q ss_pred             HHhcCchhhHHHHHHHHH
Q 008615          515 KELLGAENIFLLFAAIAF  532 (559)
Q Consensus       515 ~~~~g~~~~~~~~~~~~~  532 (559)
                      .+..|+.....+.+.+.+
T Consensus       347 ~~~~g~~~~~~~~~~~~~  364 (392)
T PRK10473        347 AAVLGISAWNMLIGILIA  364 (392)
T ss_pred             HHHhccchhHHHHHHHHH
Confidence            888887655554444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=6.7e-31  Score=256.75  Aligned_cols=344  Identities=27%  Similarity=0.363  Sum_probs=252.4

Q ss_pred             Hhhhcccccccccccc-cccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATI-SLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  188 (559)
                      .++.+++.....+.++ .+.++       +|.+..+++++.+++.++..++.++.|+++||+|||++++++.++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~   77 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSL   77 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHH
Confidence            3444555555666666 55555       999999999999999999999999999999999999999999999999977


Q ss_pred             HHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhh
Q 008615          189 TTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGL  268 (559)
Q Consensus       189 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~  268 (559)
                      +..++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.+.+.. +||+.|++
T Consensus        78 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~~  156 (352)
T PF07690_consen   78 LLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFLI  156 (352)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHHH
T ss_pred             HhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-cccccccc
Confidence            77777888899999999999999999999999999999999999999999999999999999999998776 89999999


Q ss_pred             hHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccc
Q 008615          269 SAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG  347 (559)
Q Consensus       269 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (559)
                      .+++.++..++. ++++++++....+        +                  +.+. .             .+.+++..
T Consensus       157 ~~~~~~~~~il~~~~~~~~~~~~~~~--------~------------------~~~~-~-------------~~~~~~~~  196 (352)
T PF07690_consen  157 SAILSLIAAILFILFLPEPPPPRERE--------S------------------PKES-E-------------SKKPKPLK  196 (352)
T ss_dssp             HHHHHHHHHHHHHCCC---STTTT----------S------------------STTT-T---------------HHHCCC
T ss_pred             ccchhhhhhhhHhhhhhhcccccccc--------c------------------cccc-c-------------cccccccc
Confidence            999999887653 4454443200000        0                  0000 0             00111112


Q ss_pred             -cchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008615          348 -SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR  425 (559)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  425 (559)
                       .++.+++++.++..++......+..    .....+.|.+ .+..+.+...+.+.......+..+++.++.+++.||+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  272 (352)
T PF07690_consen  197 PGFKSLFKNPVLWILLIAFFLFFFVF----SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGR  272 (352)
T ss_dssp             H-CTHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccchhhhhhhhhhHHHHHH----HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence             2566777776663333333332222    2467777877 556677622688888999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHH
Q 008615          426 RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA  505 (559)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~  505 (559)
                      ++..........+..+.+......  .+....+....+ .+.......+....+..+.+|++++|++.|+.+...++++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~  349 (352)
T PF07690_consen  273 RRRLLIAILLLILGALGLLLLPFS--SSPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI  349 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSHHH--CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            887777666666655555432211  222333333333 33333344566678899999999999999999999999999


Q ss_pred             HHH
Q 008615          506 IVT  508 (559)
Q Consensus       506 i~~  508 (559)
                      ++|
T Consensus       350 igP  352 (352)
T PF07690_consen  350 IGP  352 (352)
T ss_dssp             HHH
T ss_pred             HCC
Confidence            887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.98  E-value=6.1e-30  Score=258.10  Aligned_cols=370  Identities=14%  Similarity=0.066  Sum_probs=259.4

Q ss_pred             hhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----chHHH-HHHHHHHHH
Q 008615          111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYA  184 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~  184 (559)
                      +..|.......+.++....+       .|.+..++|.+ +...+.+ ++.+++|+++||+     |||+. ++.+.++.+
T Consensus        22 ~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         22 FASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            44555555666667766655       78999999997 4444444 6899999999999     99885 667777777


Q ss_pred             HHHHHHHhc---hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCc
Q 008615          185 LGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG  261 (559)
Q Consensus       185 i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~  261 (559)
                      ++.+++++.   ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+...|
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            787777775   47889999999999999999999999999999999999999999999999999999999998873239


Q ss_pred             chHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccc
Q 008615          262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT  341 (559)
Q Consensus       262 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (559)
                      ||..|++.+++.++..+..+++||+++..      ++                      ++.  .               
T Consensus       173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~------~~----------------------~~~--~---------------  207 (491)
T PRK11010        173 WQGMYWLMAALLIPCIIATLLAPEPTDTI------PV----------------------PKT--L---------------  207 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccc------cc----------------------ccc--h---------------
Confidence            99999999988877766666677754200      00                      000  0               


Q ss_pred             cccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhHHHHH-HHHHHHHHHHHHHHHHH
Q 008615          342 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVS-VVIGVFKLVMTWIAVAK  419 (559)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l  419 (559)
                      ++....++++.++++..+...+..++......    ....+.+.++ ++.|++. .+.+... ....++.+++.+++|++
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~-~~~g~~~~~~g~i~~iiG~ll~G~L  282 (491)
T PRK11010        208 EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDA----FAMSLTTTFLIRGVGFDA-GEVGLVNKTLGLLATIVGALYGGIL  282 (491)
T ss_pred             hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00001124456666665544443333222221    2333445554 5578777 6777776 45567899999999999


Q ss_pred             hhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHH
Q 008615          420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT  499 (559)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~  499 (559)
                      .||+++|+.+.++.++.++..+.+..... ...+.+......++...+++.... ...++..++.+++.+++..|+.+..
T Consensus       283 ~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~  360 (491)
T PRK11010        283 MQRLSLFRALMIFGILQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSAL  360 (491)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999988877666555554433322111 111222222222222222222222 2346777888989999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhh
Q 008615          500 NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       500 ~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      ..+|..+++.+.|.+.|..||...|.+.+++.+++.++.+..
T Consensus       361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888888888888877666554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.98  E-value=4.4e-30  Score=253.50  Aligned_cols=337  Identities=17%  Similarity=0.165  Sum_probs=243.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.+..++|++.+.+.++..+..++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++.+...+..
T Consensus        41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~  120 (400)
T PRK11646         41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR  120 (400)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhcc
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQ  296 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~  296 (559)
                      .+++.|++|+++|++++++.....++|..+||.+++++. .. +||+.|++.+++.++..++. ++.||.+.        
T Consensus       121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~--------  190 (400)
T PRK11646        121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL--------  190 (400)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc--------
Confidence            999999999999999999999999999999999999988 55 99999999888777655443 44443210        


Q ss_pred             CCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhCh
Q 008615          297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ  376 (559)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (559)
                            ++                 .                   +++.+..++++++++.++...+.....+...    
T Consensus       191 ------~~-----------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  224 (400)
T PRK11646        191 ------ST-----------------V-------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLA----  224 (400)
T ss_pred             ------cc-----------------c-------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHH----
Confidence                  00                 0                   0000112455667766554433322222211    


Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchh
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL  455 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (559)
                      .....+.|.++++.+.++ ...+.......++...+....+++.| |++.++.+..+.++.+++.+++...     ++.+
T Consensus       225 ~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~  298 (400)
T PRK11646        225 VQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----SNLQ  298 (400)
T ss_pred             HHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----hhHH
Confidence            123456788888876655 67777777776666655555565555 5665666666666666665544421     2222


Q ss_pred             HHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC----chhhHHHHHHHH
Q 008615          456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----AENIFLLFAAIA  531 (559)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g----~~~~~~~~~~~~  531 (559)
                      ......++...+. ....|...++..+..|++.+|+++|+.+....+|..++|.+.|.+.|..+    ....+.+.+++.
T Consensus       299 ~~~~~~~l~~~g~-~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~  377 (400)
T PRK11646        299 QLFTLICLFYIGS-IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIG  377 (400)
T ss_pred             HHHHHHHHHHHHH-HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHH
Confidence            2222222222222 23334555778899999999999999999999999999999999998753    234455545555


Q ss_pred             HHHHHH
Q 008615          532 FLAVLF  537 (559)
Q Consensus       532 ~~~~~~  537 (559)
                      +++.+.
T Consensus       378 ~~~~~~  383 (400)
T PRK11646        378 LITLLA  383 (400)
T ss_pred             HHHHHH
Confidence            555443

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=4.8e-30  Score=252.72  Aligned_cols=340  Identities=16%  Similarity=0.154  Sum_probs=247.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|++..++|++.+++.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+..
T Consensus        38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  117 (395)
T PRK10054         38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL  117 (395)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998888888889


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhcc
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQ  296 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~  296 (559)
                      .++..|.+++++|++++++.....++|.++||.+++++.. . +|+..|++.+++.++..++. +++||+++        
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~--------  187 (395)
T PRK10054        118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRSEK--------  187 (395)
T ss_pred             HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            9999999999999999999999999999999999998875 4 89999999888877765544 33544321        


Q ss_pred             CCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhCh
Q 008615          297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ  376 (559)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (559)
                           +++.+               +                     ++..+.++.+|++.++...+..++..+....  
T Consensus       188 -----~~~~~---------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  224 (395)
T PRK10054        188 -----AIATE---------------T---------------------GSVWSPSVLLQDKALLWFTCSGFLASFVSGA--  224 (395)
T ss_pred             -----ccccc---------------h---------------------hhhhhhhhhccCceehHHHHHHHHHHHHHHH--
Confidence                 00000               0                     0000124567777777665544443333221  


Q ss_pred             hhHHHhHHHHHH---HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCc
Q 008615          377 PSVLYYAGPILQ---SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF  453 (559)
Q Consensus       377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (559)
                        +..+.+.+..   +.+.+. ...+.......+..+......+++.||.++|+.+..+..+..++...+...    .++
T Consensus       225 --~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~  297 (395)
T PRK10054        225 --FASCISQYVMVVADSDFAE-KVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS----GNS  297 (395)
T ss_pred             --hhhhHHHHHHHhcccchHH-HHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc----chH
Confidence              2223333332   233333 455666666666667777888999999999998888877777666555431    122


Q ss_pred             hhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHH
Q 008615          454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL  533 (559)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~  533 (559)
                      .+...+. .+..+.......|....++.+..|++.++++.+..+ ...+|..++|.+.|.+.|..|+...|++.+++..+
T Consensus       298 ~~~~~~~-~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        298 LLLWGMS-AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            2222222 223333333334555577888889999999988765 57789999999999999999988888776665555


Q ss_pred             HHHHHH
Q 008615          534 AVLFIV  539 (559)
Q Consensus       534 ~~~~~~  539 (559)
                      ..++..
T Consensus       376 ~~~~~~  381 (395)
T PRK10054        376 AWLLML  381 (395)
T ss_pred             HHHHHH
Confidence            544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=1.1e-29  Score=250.36  Aligned_cols=359  Identities=17%  Similarity=0.116  Sum_probs=259.7

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 008615          104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  183 (559)
                      +++++..+..|+..+..++.+|.++++       +|++..+.|++.+.+.+++.+++++.|++.||+|||++++++++++
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~   78 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            345556678888888888888888766       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh---chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC-
Q 008615          184 ALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-  259 (559)
Q Consensus       184 ~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-  259 (559)
                      +++.+++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+|+.+++.+.... 
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~  158 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL  158 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999988654   4689999999999999999999999999999999999999999999999999999999988764221 


Q ss_pred             ------------------------CcchHHHhhhHHHHHHHHHHhhc--cCCchHHHHHhhccCCCchhhhHHHHHHHHH
Q 008615          260 ------------------------GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALG  313 (559)
Q Consensus       260 ------------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (559)
                                              .+||++|++.+++.++..++..+  +||.+.                 ++      
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----------------~~------  215 (410)
T TIGR00885       159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----------------SD------  215 (410)
T ss_pred             ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------------cc------
Confidence                                    15999999988877766554433  232110                 00      


Q ss_pred             hhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCC
Q 008615          314 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS  393 (559)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (559)
                              +                  ++.....+.++++|+|.++...+..++....+.    ....|.+.+.++.+..
T Consensus       216 --------~------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~~  265 (410)
T TIGR00885       216 --------A------------------KQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIPG  265 (410)
T ss_pred             --------c------------------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCC
Confidence                    0                  000001123456777776665554444433332    3456777777665332


Q ss_pred             C-chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccc
Q 008615          394 A-AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISF  472 (559)
Q Consensus       394 ~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (559)
                      . ...+.........+..+|+++++++.||+++|+.+.+..++..+.+++....     . .......+.+..++.... 
T Consensus       266 ~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~-~~~~~~~l~~~glf~s~~-  338 (410)
T TIGR00885       266 MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----G-GHVGLYCLTLCSAFMSLM-  338 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----C-ChHHHHHHHHHHHHHHHH-
Confidence            2 1334445555667789999999999999999998887777766665555531     1 222233333344444333 


Q ss_pred             ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc------CchhhHHHHHHHH
Q 008615          473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL------GAENIFLLFAAIA  531 (559)
Q Consensus       473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~------g~~~~~~~~~~~~  531 (559)
                      .|..++...+..+++.+..+.++....  +|+++.|++.|.+.|..      ++...|++...+.
T Consensus       339 fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       339 FPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            367778888888876655455555543  99999999999999964      3556666544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.3e-29  Score=249.92  Aligned_cols=333  Identities=20%  Similarity=0.237  Sum_probs=235.8

Q ss_pred             ccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhH
Q 008615          117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL  196 (559)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  196 (559)
                      .....+.+|.+.++       +|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+++++
T Consensus         7 ~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~   79 (377)
T PRK11102          7 IDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI   79 (377)
T ss_pred             HHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            33445666766665       89999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHH
Q 008615          197 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM  276 (559)
Q Consensus       197 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~  276 (559)
                      +.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+.. +||+.|++.+++.++.
T Consensus        80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  158 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988877 9999999988888776


Q ss_pred             HHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhccc
Q 008615          277 GIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG  355 (559)
Q Consensus       277 ~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (559)
                      .+.. +++||+++..      ++                    + ..+                  .++...++++.+++
T Consensus       159 ~~~~~~~~~~~~~~~------~~--------------------~-~~~------------------~~~~~~~~~~~~~~  193 (377)
T PRK11102        159 AALVFFFIPETLPKE------RR--------------------Q-PFH------------------LRTTIRNFASLFRH  193 (377)
T ss_pred             HHHHHHhCCccCccc------cc--------------------C-CCC------------------hHHHHHHHHHHHcC
Confidence            5544 5566643200      00                    0 000                  00001123456666


Q ss_pred             CchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHH
Q 008615          356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC  434 (559)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  434 (559)
                      +..+...+...+.+.    +...+..+.|.++. ..+.++ .+.+.......++.+++.++.+++.||+++|+.+..+..
T Consensus       194 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  268 (377)
T PRK11102        194 KRVLGYMLASGFSFA----GMFSFLTAGPFVYIELNGVSP-QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLW  268 (377)
T ss_pred             hHHHHHHHHHHHHHH----HHHHHHHcCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            655544333222222    22234445555554 467776 788899999999999999999999999999998888776


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHH-HHHHHHHHh
Q 008615          435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFA  510 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~i  510 (559)
                      +..+..+.+..... .....+.......+..+.... ..+....+..|..| +.++++.++.+.... ++..+++.+
T Consensus       269 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        269 IQFIMGIWLVVSAL-LDLGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            55443333322211 111222222222222222222 22223345667766 789999999877644 444444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=9.7e-30  Score=252.66  Aligned_cols=338  Identities=25%  Similarity=0.298  Sum_probs=232.6

Q ss_pred             cchhHHHHHHHH-----HHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHh--------HHHHHHHHH
Q 008615          140 LSAVQLGLVVSG-----SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLY  206 (559)
Q Consensus       140 ~s~~~~g~~~s~-----~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~  206 (559)
                      .++.+.+.+.+.     ..++..+++++.|+++||+|||++++.+.++.+++.++++++++++        .++++|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            445555554443     3344457899999999999999999999999999999999998875        478899999


Q ss_pred             HhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc--------CCCCcchHHHhhhHHHHHHHHH
Q 008615          207 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~~  278 (559)
                      |++.+...+....++.|++++++|++..++...+..+|.++++.++..+.        ... +||+.|++.+++.++..+
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc-chHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876543        234 899999988877776665


Q ss_pred             HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          279 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       279 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      +...++|++++...++                                              ++++.+.+.++.++++..
T Consensus       186 ~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~  219 (394)
T TIGR00883       186 LRRNLEETPVFEKAQE----------------------------------------------KHKKKRGPIRETLTKHRK  219 (394)
T ss_pred             HHHhcCCChhHHHHHh----------------------------------------------ccccccCCHHHHHHhchH
Confidence            5566777654211100                                              000112234455555431


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA  437 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  437 (559)
                      . ....... .+...........+.|.+++ +.+.+. ...+.......++.+++.++.|++.||++||+.+.....+..
T Consensus       220 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  296 (394)
T TIGR00883       220 P-FLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAA  296 (394)
T ss_pred             H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            1 1111111 12222223345667888884 456665 678888888889999999999999999999998775544443


Q ss_pred             HHH-HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHH-HHHHHHHHHHHHhhHHHH
Q 008615          438 LSL-LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLK  515 (559)
Q Consensus       438 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~l~  515 (559)
                      +.. ..+....  ...+.+...... +..++......+...++..|.+|++.|+++.++.. ....+|..++|.+.|.+.
T Consensus       297 ~~~~~~~~~~~--~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       297 LLAVPLLMALL--DSGSFTLFFFLV-LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             HHHHHHHHHHh--cCCchHHHHHHH-HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence            332 2222111  112222222222 33333332334455688899999999999999854 456678889999999999


Q ss_pred             HhcC-chhhHHHHHHH
Q 008615          516 ELLG-AENIFLLFAAI  530 (559)
Q Consensus       516 ~~~g-~~~~~~~~~~~  530 (559)
                      +..| +...++..+++
T Consensus       374 ~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       374 AMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHcCcchhHHHHHHHH
Confidence            9988 55555544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=9.6e-29  Score=244.81  Aligned_cols=336  Identities=15%  Similarity=0.119  Sum_probs=238.4

Q ss_pred             cccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchh
Q 008615          116 DIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG  195 (559)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  195 (559)
                      ......+.+|.+.++       +|.++.+.+++.+++.+++.++++++|+++||+|||++++++.++..++.+++.++++
T Consensus        23 ~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   95 (394)
T PRK11652         23 AQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS   95 (394)
T ss_pred             HHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            344555666666655       9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHH
Q 008615          196 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL  275 (559)
Q Consensus       196 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~  275 (559)
                      ++.+++.|++.|++.+...+....++.|+++++++++++++...+..+|..++|.+++.+.+.. +||+.|++.+++.++
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~~  174 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHH
Confidence            9999999999999999888888889999999999999999999999999999999999988776 999999998887766


Q ss_pred             HHHH-hhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcc
Q 008615          276 MGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ  354 (559)
Q Consensus       276 ~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (559)
                      ..+. .+++||+++..            ++.                                     .+.+..+++.++
T Consensus       175 ~~~~~~~~~~~~~~~~------------~~~-------------------------------------~~~~~~~~~~~~  205 (394)
T PRK11652        175 VTFSMARWMPETRPAD------------ARR-------------------------------------TRVLASYRTLLS  205 (394)
T ss_pred             HHHHHHHhCCccCccc------------cch-------------------------------------hHHHHHHHHHHc
Confidence            5444 35567654200            000                                     000112345566


Q ss_pred             cCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhH
Q 008615          355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV  433 (559)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  433 (559)
                      ++.++...+........    ...+..+.+.++++ .+.+. ...++......++.+++.++.+++.||.+++.  ....
T Consensus       206 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~~~  278 (394)
T PRK11652        206 NRRFNCYLLMLIGTLAG----IAVFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV  278 (394)
T ss_pred             ChHHHHHHHHHHHHHHH----HHHHHHhChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            66655544433222221    12334445556665 66666 67788888888888899999999999988322  2222


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 008615          434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP  513 (559)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~  513 (559)
                      ....++.+.+...........+......++...+.+ ...+....+..|.+| +.++++.++.+....+|+.+++.+.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~  356 (394)
T PRK11652        279 ICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM  356 (394)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222211110111222333333333333333 334555567778877 678999999999999999999998887


Q ss_pred             HHHh
Q 008615          514 LKEL  517 (559)
Q Consensus       514 l~~~  517 (559)
                      +.+.
T Consensus       357 ~~~~  360 (394)
T PRK11652        357 LPQT  360 (394)
T ss_pred             ccCC
Confidence            7554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=2e-28  Score=241.80  Aligned_cols=337  Identities=15%  Similarity=0.089  Sum_probs=223.8

Q ss_pred             cccchhHHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHH-HHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKREL-IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +|.+.+++|++.+.+.+ ++.++.+++|+ .||+||||.+ +.+.++.+++.++.+++++++.+++.+.+.|...+...+
T Consensus        46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  124 (393)
T PRK15011         46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANP  124 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            89999999999876655 55566655555 9999999875 566666678888888999999887776655555566788


Q ss_pred             hhhhhhhccCCcccc--hhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHH
Q 008615          216 GAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLL  292 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~  292 (559)
                      ...+++.++.++++|  +...++.+++.++|.++||++++.+.+.. |||+.|++.++.+++..+.. +++||.++-   
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---  200 (393)
T PRK15011        125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---  200 (393)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhhcCccCCC---
Confidence            888888888776655  34457888999999999999999998877 99999999988877765554 456765420   


Q ss_pred             hhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC-chhHHHHHHHHHHHH
Q 008615          293 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKAFIIGGGLVLFQ  371 (559)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  371 (559)
                           +     + +            .+ .                   +      .....+++ ..+.........+. 
T Consensus       201 -----~-----~-~------------~~-~-------------------~------~~~~~~~~~~~~~~~~~~~~~~~-  230 (393)
T PRK15011        201 -----L-----P-L------------AT-G-------------------T------LEAPRRNRRDTLLLFVICTLMWG-  230 (393)
T ss_pred             -----C-----c-c------------cc-c-------------------c------ccccccccccHHHHHHHHHHHHH-
Confidence                 0     0 0            00 0                   0      00000111 11212111111111 


Q ss_pred             HhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 008615          372 QITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL  450 (559)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (559)
                         ....+..+.|.++++ .+.+. .+.+.+.....++.+++.++.|+++||++||+.+..+.....+....+..     
T Consensus       231 ---~~~~~~~~~p~~l~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----  301 (393)
T PRK15011        231 ---TNSLYIINMPLFIINELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-----  301 (393)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----
Confidence               122344567777754 56665 66777777777778889999999999999998777665544443322221     


Q ss_pred             cCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHH
Q 008615          451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI  530 (559)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~  530 (559)
                      .++.+..+....+...+.+.. .+....+..|..|+ .++++.++.+...++|..+++.+.|.+.+..|+...+.+.+++
T Consensus       302 ~~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~  379 (393)
T PRK15011        302 AHSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM  379 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            122222222222111121111 12223556788884 5999999999999999999999999999999998888877777


Q ss_pred             HHHHHHHHHh
Q 008615          531 AFLAVLFIVR  540 (559)
Q Consensus       531 ~~~~~~~~~~  540 (559)
                      .+++.++.+.
T Consensus       380 ~~~~~~~~~~  389 (393)
T PRK15011        380 IIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHh
Confidence            7666655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=8.9e-29  Score=243.29  Aligned_cols=357  Identities=14%  Similarity=0.095  Sum_probs=259.4

Q ss_pred             HhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH----HHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL----IIAAVLYAL  185 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~i  185 (559)
                      .+.+.+..+...|.+|.+.++       +|.+..++|++.+++.+...++++++|+++||+|||+..    ..+..+..+
T Consensus        13 ~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902        13 FFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            344445556667777777766       899999999999999999999999999999999985433    233222222


Q ss_pred             HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                        .++..+++++.+++.|+++|.+.+...|...+++.++  .++|+++++....+.++|.+++|++++.+.+.. |||..
T Consensus        86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~  160 (382)
T TIGR00902        86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNI  160 (382)
T ss_pred             --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHH
Confidence              3445678999999999999999988899988887765  477899999999999999999999999999888 99999


Q ss_pred             HhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccc
Q 008615          266 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS  345 (559)
Q Consensus       266 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (559)
                      |++.++..++..+ .+.++|+++        ++    ++.+               +                  ++.++
T Consensus       161 f~~~~~~~~~~~~-~~~~~~~~~--------~~----~~~~---------------~------------------~~~~~  194 (382)
T TIGR00902       161 LAILTAGLAFMLI-GFLIKPTIP--------PK----DAIP---------------E------------------DESQG  194 (382)
T ss_pred             HHHHHHHHHHHHH-HHHcCCCCC--------CC----cccc---------------c------------------ccccc
Confidence            9887665333333 333333211        00    0000               0                  00011


Q ss_pred             cccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008615          346 EGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR  425 (559)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  425 (559)
                      ..++++++|+|+++...+...+.....    ..+..+.|.++++.|.+. ...+.......++.+++.++.+++.||++.
T Consensus       195 ~~~~~~~l~~~~~~~~l~~~~l~~~~~----~~~~~~~~~~l~~~g~s~-~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~  269 (382)
T TIGR00902       195 DSAFIALLKNPMNLRFLAAVCLIQGAH----AAYYGFSAIYWQAAGISA-SATGLLWGIGVLAEIIIFAFSNKLFQNCSA  269 (382)
T ss_pred             chhHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHhHHHHhhCCH
Confidence            123567888888777665554444433    245567788888888887 788888888889999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHH-HHHHHH
Q 008615          426 RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL-TNFGSN  504 (559)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~  504 (559)
                      |+.+.++.++..+....+...     ++.+..+....+-...++. ..+....++.+. |++.++++.++.+. ...+|.
T Consensus       270 ~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~l~g~~~~~-~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~  342 (382)
T TIGR00902       270 RDLLLISAIACVGRWAIIGAI-----EAFPLIFLLQILHCGTFAV-CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI  342 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhH-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH
Confidence            999998888888887766542     2333333333333333333 333445777787 88899999999874 567899


Q ss_pred             HHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          505 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       505 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      .+++.+.|.+.|..|. ..|++.+++.+++.++
T Consensus       343 ~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       343 AIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999999985 6677777777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=2.9e-28  Score=237.83  Aligned_cols=332  Identities=18%  Similarity=0.133  Sum_probs=240.6

Q ss_pred             cccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHh
Q 008615          118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG  197 (559)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  197 (559)
                      ....+.+|.+.++       +|++..+.|++.+++.+++.++.++.|+++||+|||+++.++.++.+++.+++ .+++++
T Consensus        17 ~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~   88 (355)
T TIGR00896        17 TSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA   88 (355)
T ss_pred             ccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence            3456677777766       99999999999999999999999999999999999999999999988888887 778999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCC-cchHHHhhhHHHHHHH
Q 008615          198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLM  276 (559)
Q Consensus       198 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~  276 (559)
                      .+++.|++.|++.+...+....++.|+++ ++|++++++...+.++|..+++.+++.+.+... +||+.|.+.+++.++.
T Consensus        89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999888888888999986 689999999999999999999999888776542 4999998776655443


Q ss_pred             HHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC
Q 008615          277 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP  356 (559)
Q Consensus       277 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (559)
                      .+  .++|+.++        ++                  .+                      +++..+...++++|+|
T Consensus       168 ~~--~~~~~~~~--------~~------------------~~----------------------~~~~~~~~~~~~~~~~  197 (355)
T TIGR00896       168 LL--AWIPQVRR--------RV------------------AA----------------------NQTTTRLTPVRIWRSP  197 (355)
T ss_pred             HH--HHhhhhcc--------cc------------------CC----------------------CCCCCCCCCchhhcCH
Confidence            22  22333211        00                  00                      0000112345667777


Q ss_pred             chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CcchhhhhHHH
Q 008615          357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-RRPLLIGGVCG  435 (559)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~  435 (559)
                      .++...+...+.....    .....|.|.++++.+.+. ...+.......++.++++++.|++.||++ ||+.+..+..+
T Consensus       198 ~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~~g~~~-~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~  272 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLY----YSLIGWLPAILISHGASA-ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVL  272 (355)
T ss_pred             hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Confidence            6665444333322222    245678898998888776 78889999999999999999999999995 55566666666


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeec-ccCCccchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 008615          436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS-EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL  514 (559)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l  514 (559)
                      .+++.+.+.+..    ... ... .. +..+.......+...+... +..+++.++...++.+...+++..++|.+.|.+
T Consensus       273 ~~~~~~~~~~~~----~~~-~~~-~~-~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       273 QLVGLCGLLFAP----MHG-LWA-WA-LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             HHHHHHHHHHhh----hhH-HHH-HH-HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655444321    111 111 12 2223333333344334444 334456778999999999999999999999999


Q ss_pred             HHhcCc
Q 008615          515 KELLGA  520 (559)
Q Consensus       515 ~~~~g~  520 (559)
                      .|..|.
T Consensus       346 ~~~~g~  351 (355)
T TIGR00896       346 HDISGN  351 (355)
T ss_pred             HHHhcc
Confidence            998873

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=3.4e-28  Score=240.92  Aligned_cols=352  Identities=13%  Similarity=0.080  Sum_probs=243.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhch-HHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..++.+.++++.+++.|++.|++.+...+.
T Consensus        33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  112 (418)
T TIGR00889        33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL  112 (418)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence            89999999999999999999999999999999965 78889999999899999999999999999999999988777776


Q ss_pred             hhhhhh--------ccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchH
Q 008615          217 APLYIA--------ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR  288 (559)
Q Consensus       217 ~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~  288 (559)
                      ..++..        |......|.+.+|      .+|.++||.+++.+.... .|+ +|++.++..++..++.+++||+|+
T Consensus       113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~~~~~~~~~~~~~~e~~~  184 (418)
T TIGR00889       113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNI-QLYITAGSSALLGVFALTLPDIPV  184 (418)
T ss_pred             HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhH-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence            655432        2222233455555      467888888888763322 455 455666666665555667787653


Q ss_pred             HHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHH
Q 008615          289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV  368 (559)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (559)
                      -   +   ++     +                +..                 .++....+.++++|+|.++...+..++.
T Consensus       185 ~---~---~~-----~----------------~~~-----------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~  220 (418)
T TIGR00889       185 A---K---ST-----A----------------KMS-----------------IKVMLGLDAFILFKNKRMAIFFFFSMLL  220 (418)
T ss_pred             C---c---cc-----c----------------ccC-----------------HHHHhhhhHHHHhcCCCeeeHHHHHHHH
Confidence            0   0   00     0                000                 0000011234567777776655544443


Q ss_pred             HHHHhhChhhHHHhHHHHHHHcCCCC-------chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHH
Q 008615          369 LFQQITGQPSVLYYAGPILQSAGFSA-------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL  441 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  441 (559)
                      .....    ....+.+.++++.+.++       ....+.......+..+++.++.|++.||+|+|+++..+.++.+++..
T Consensus       221 ~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~  296 (418)
T TIGR00889       221 GAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG  296 (418)
T ss_pred             HhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33221    23355566777766443       14568888888889999999999999999999999998888777765


Q ss_pred             HHHHHHHhhcCc-hhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHH-HHHHHHHHHHHHhhHHHHHhc-
Q 008615          442 LLSAYYKILGGF-PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELL-  518 (559)
Q Consensus       442 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~l~~~~-  518 (559)
                      ++...   .... ....+....+..+.......+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.|.+.|.. 
T Consensus       297 l~~~~---~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       297 FFAYG---DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHc---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            55431   0111 12222222222332222333444577889999999999999997 567889999999999999984 


Q ss_pred             -----CchhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615          519 -----GAENIFLLFAAIAFLAVLFIVRTVPETKGL  548 (559)
Q Consensus       519 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (559)
                           ||+..|.+.+++.++++++.+++.+|+++.
T Consensus       374 ~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       374 AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence                 477888888888888888888888876543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.2e-29  Score=249.88  Aligned_cols=425  Identities=18%  Similarity=0.170  Sum_probs=292.2

Q ss_pred             cccchhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008615           91 QEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL  170 (559)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~  170 (559)
                      +..|.|-.....++..   .+.+|..... +...+.+.++       ++.+..+++|+.++....+.+..++.+.+.|||
T Consensus        40 dGG~gWvV~~a~fl~~---~~~~g~~~~~-Gv~~~~~~~~-------f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf  108 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVN---LSTDGLINSF-GLLFEELMDY-------FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF  108 (509)
T ss_pred             CCCeeeeeeHhHHHHH---Hhhhcchhee-hhhHHHHHHH-------hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc
Confidence            4556665444333222   2333433322 2334444444       899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhchhHhHHHHH-HHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHH
Q 008615          171 GRKRELIIAAVLYALGALTTAYAPGLGVLLVG-RLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY  249 (559)
Q Consensus       171 Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  249 (559)
                      |.|.+.++|.++.+++.++.++++++|++++. -++.|+|.|..+.....++..|| +|+|+.+.|+..++.++|.++-|
T Consensus       109 g~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~  187 (509)
T KOG2504|consen  109 GCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFP  187 (509)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHH
Confidence            99999999999999999999999999999886 58999999999999999999887 56799999999999999999999


Q ss_pred             HhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc-CCchHHHHHhhccCCCchhhhHHHHHHHHH-hhcCCCCCCchhhH
Q 008615          250 FVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLLLRAVQGKGSLQEYKEQAISALG-KLRRRPPGDKLSER  327 (559)
Q Consensus       250 ~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  327 (559)
                      .+.-.+.+.+ |||+.+++.+.+.+-.++....+ |.++.....+.++.+. .....+......+ .....+........
T Consensus       188 ~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (509)
T KOG2504|consen  188 PLLKYLLSKY-GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN-SAASVESTPKPVELRISERDSGLKKLSL  265 (509)
T ss_pred             HHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-ccccccccccccccccccCCCCCCcccc
Confidence            9999999998 99999999988887766655443 3232200000000000 0000000000000 00000000000000


Q ss_pred             HHHHHHHHhhhcccc-cccccc---chhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHH
Q 008615          328 QIEDTLVSLKSSYTD-EKSEGS---FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV  403 (559)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (559)
                      .......+.+.+... ..+...   ..++++++.++.+.+...+..+..    .....++|.+.++.+++. .++..+..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~----~~p~~~l~~~~~~~g~~~-~~aa~l~S  340 (509)
T KOG2504|consen  266 SNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGF----NVPFVYLPSYAKSLGLSS-NDAAFLLS  340 (509)
T ss_pred             cchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCCh-hhhHHHHH
Confidence            000000111111110 111112   257888877776665555555444    457788899999988888 88999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcc--hhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeec
Q 008615          404 VIGVFKLVMTWIAVAKVDDLGRRP--LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS  481 (559)
Q Consensus       404 ~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (559)
                      ..++..++++++.|++.|+...++  +..++.++.+++.+.+..      ...+..++..+++.++....+..+....+.
T Consensus       341 iigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~  414 (509)
T KOG2504|consen  341 IIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF------ATTYVGLIVFSILFGFCVGSFSSLTPVILV  414 (509)
T ss_pred             HHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988444  344444555555433333      234455556666666666666666656888


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHHHHHh
Q 008615          482 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       482 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      |+++.++-..+.|+...+..++..++|++.|.+.|..| |...|++.+++.+++.++.++
T Consensus       415 ~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  415 DLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             HHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 888888888888877765443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=3.7e-28  Score=242.44  Aligned_cols=352  Identities=16%  Similarity=0.087  Sum_probs=225.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---hchh-----HhHHHHHHHHHHhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPG-----LGVLLVGRLLYGLG  209 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~-----~~~l~~~r~l~G~~  209 (559)
                      +|++..++|++.+++.+++.++++++|+++||+|||++++++..+.+++.....   .++.     +...++.+++.|.+
T Consensus        41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (420)
T PRK09528         41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG  120 (420)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            899999999999999999999999999999999999999887666655433221   1111     11122233333333


Q ss_pred             hhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHH
Q 008615          210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW  289 (559)
Q Consensus       210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~  289 (559)
                      .....+....+..+ . .+++++.++......++|..++|++++.+.+.  +|++.|++.++++++..++.++++++++-
T Consensus       121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  196 (420)
T PRK09528        121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAKPDAPS  196 (420)
T ss_pred             hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence            33333333333222 2 34577888999999999999999999988763  89999999888887766666554332210


Q ss_pred             HHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHH
Q 008615          290 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL  369 (559)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (559)
                                    +.+..++     ...+                     +++......++.+|+|.++...+......
T Consensus       197 --------------~~~~~~~-----~~~~---------------------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~  236 (420)
T PRK09528        197 --------------TAKVANA-----LGAN---------------------ASAVSLKDALALLKLPKFWFLVLYVIGVA  236 (420)
T ss_pred             --------------hhhhccc-----hhcc---------------------cccccHHHHHHHccCCCeEeehHHHHHHH
Confidence                          0000000     0000                     00001112345677777665444332222


Q ss_pred             HHHhhChhhHHHhHHHHHHH----cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHH
Q 008615          370 FQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA  445 (559)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  445 (559)
                      ....    ....+.|.++.+    .+.+. ...+.+.....++..++.++.|++.||+++|+.+..+.++.+++.+++.+
T Consensus       237 ~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~  311 (420)
T PRK09528        237 CFYD----VFDQQFPNFFASFFATPEQGT-RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF  311 (420)
T ss_pred             HHHH----HHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence            2211    122233433332    23333 56778888888888999999999999999999988888777776666553


Q ss_pred             HHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH-HHHHHHHHHHHHHHhhHHHHHhcCchhhH
Q 008615          446 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELLGAENIF  524 (559)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~i~g~l~~~~g~~~~~  524 (559)
                      .     .+.+..+. ..+..+.......+....+..|.+|++.+++..+. .++...+|.++++.+.|.+.|..|++..|
T Consensus       312 ~-----~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f  385 (420)
T PRK09528        312 A-----TGPLEVSI-LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY  385 (420)
T ss_pred             c-----ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence            1     23333322 22222222222223334677888899999888765 56778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccC
Q 008615          525 LLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~  544 (559)
                      .+.+++.++..++.++..++
T Consensus       386 ~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        386 LILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99888887777666655554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=8.2e-28  Score=236.63  Aligned_cols=352  Identities=16%  Similarity=0.096  Sum_probs=247.7

Q ss_pred             cccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchH----HHHHHHHHHHHHHHHH
Q 008615          114 GYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK----RELIIAAVLYALGALT  189 (559)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~  189 (559)
                      ....+.+.|.+|...++       +|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  ....
T Consensus        17 ~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~   87 (382)
T PRK11128         17 FFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF   87 (382)
T ss_pred             HHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence            34445666777777666       899999999999999999999999999999999984    3333322222  2233


Q ss_pred             HHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhh
Q 008615          190 TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLS  269 (559)
Q Consensus       190 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~  269 (559)
                      +..+++++.+++.|++.|++.+...+...+++.++  .++|+++++......++|..+||++++++.+.. |||..|++.
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~  164 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWIL  164 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHH
Confidence            44568899999999999999998999888887776  456888999999999999999999999998888 999999988


Q ss_pred             HHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccc
Q 008615          270 APLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF  349 (559)
Q Consensus       270 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (559)
                      ++..++..+..++.||.++             +++.+                                 .+.++...++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~-------------~~~~~---------------------------------~~~~~~~~~~  198 (382)
T PRK11128        165 TAGVASMLLGQLLRPTIMP-------------QGESR---------------------------------QQESAGWPAW  198 (382)
T ss_pred             HHHHHHHHHHHHccCCCCC-------------ccccc---------------------------------cccccccchH
Confidence            7655554444444444211             00000                                 0000112346


Q ss_pred             hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchh
Q 008615          350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL  429 (559)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  429 (559)
                      ++++|+|.++...+..++......    ....+.+.++++.|.+. ...+.......++.++..++.+++.||+++|+.+
T Consensus       199 ~~i~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l  273 (382)
T PRK11128        199 KALLKEPTVWRFLLCVSLLQGSHA----AYYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL  273 (382)
T ss_pred             HHHHcChhHHHHHHHHHHHHHHhH----hHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            788888887776655444433322    34456677778888876 6788888888889999999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHH-HHHHHHHHH
Q 008615          430 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVT  508 (559)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~  508 (559)
                      ..+.++.+++.+++...     ++.+..+...++.+.+... ..+....+..+. +++++++..++.+.. ..+|..++|
T Consensus       274 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~  346 (382)
T PRK11128        274 LLSAICGVVRWGLMGST-----TALPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMT  346 (382)
T ss_pred             HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88888777766555431     2334333333333333333 233444666666 556678888888644 566778999


Q ss_pred             HhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          509 FAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       509 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+.|.+.|..|. ..++..+++.+++.+
T Consensus       347 ~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        347 VLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            999999999986 556666655554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=1.2e-27  Score=237.11  Aligned_cols=372  Identities=18%  Similarity=0.095  Sum_probs=257.1

Q ss_pred             HhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----chHH-HHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKR-ELIIAAVLY  183 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~  183 (559)
                      .+..|+..+.....+|...++       .|++.+++|++..+...  .+..+++|+++||+     |||| +++++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~   78 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL   78 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence            455666677777778877776       79999999999777775  69999999999999     8875 788888888


Q ss_pred             HHHHHHHHhc---hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCC
Q 008615          184 ALGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG  260 (559)
Q Consensus       184 ~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~  260 (559)
                      +++..++++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...
T Consensus        79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~  158 (402)
T PRK11902         79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL  158 (402)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence            8888887776   4578888888888998998999999999999999999999999999999999999999988877534


Q ss_pred             cchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcc
Q 008615          261 GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY  340 (559)
Q Consensus       261 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (559)
                      |||..|++.+++.++..+..+++||+++..       +     +.++.                     .          
T Consensus       159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~-------~-----~~~~~---------------------~----------  195 (402)
T PRK11902        159 GWGNTYLLMAGLMLAGALTTLWAPEPEVPA-------R-----PPRSL---------------------G----------  195 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCcccc-------c-----ccchh---------------------H----------
Confidence            999999998888777666556667654210       0     00000                     0          


Q ss_pred             ccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHH-HHHHHHHHHHHHH
Q 008615          341 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAK  419 (559)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l  419 (559)
                        ++.+..+++++|+|.++...+...+.......   ......+.+.++.|.+. ...++.....+ ++.+++.++++++
T Consensus       196 --~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~-~~~g~~~~~~~~~~~i~g~~~~g~l  269 (402)
T PRK11902        196 --EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSA-GEVGIVNKTLGLAATIVGALAGGTL  269 (402)
T ss_pred             --HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence              00011356678888877666544443332221   11222344455577776 67777765544 5688999999999


Q ss_pred             hhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHH---HHHHHhhcccccccceeecccCCccchhhHHHHH
Q 008615          420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL---LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA  496 (559)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~  496 (559)
                      .||+++|+.+..+..+..+..+.+...... .++.+.......   +..+............++.+.+|.+    ..++.
T Consensus       270 ~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~  344 (402)
T PRK11902        270 MVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALL  344 (402)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHH
Confidence            999999988776666655554433322111 122232222221   1222222233344446666766644    44555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          497 VLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       497 ~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      +....++..+++.+.|.+.|..|+...|.+.+++++++.++.+...+.
T Consensus       345 ~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        345 SALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            656667777777889999999999999998888888777665544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=3.2e-28  Score=239.01  Aligned_cols=334  Identities=18%  Similarity=0.162  Sum_probs=226.5

Q ss_pred             cccccccccc-ccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch-
Q 008615          117 IGATSGATIS-LQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-  194 (559)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-  194 (559)
                      .....+..|. +.++       +|++..+.+++.+++.++++++++++|+++||+|||++++++.++.+++.+++++++ 
T Consensus        17 ~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~   89 (366)
T TIGR00886        17 WFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ   89 (366)
T ss_pred             HHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445556664 5444       999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC---------CCcchHH
Q 008615          195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYM  265 (559)
Q Consensus       195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---------~~~wr~~  265 (559)
                      +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+...         ..+||+.
T Consensus        90 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~  168 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA  168 (366)
T ss_pred             hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999999999998664 566788999999999999999999988888887777776655431         1289999


Q ss_pred             Hh-hhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccc
Q 008615          266 YG-LSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE  343 (559)
Q Consensus       266 f~-~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (559)
                      |+ +.+++..+..+ ...+.+|.|+..             ++++ +.     +.......                 .++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~-----~~~~~~~~-----------------~~~  212 (366)
T TIGR00886       169 FVIVPAGILLLPALLIFFVGADTPPGK-------------PATG-KL-----SFKGARWS-----------------VGT  212 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCccc-------------ccch-hc-----cccccccc-----------------ccc
Confidence            94 44555444333 334556655300             0000 00     00000000                 000


Q ss_pred             cccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008615          344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD  422 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  422 (559)
                      +......+.++++.++...+...+.....    ..+..+.|.++++ .+.+. .+++.+.....+..++++++.|++.||
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r  287 (366)
T TIGR00886       213 GALGDQLKVFRDRHTWILALLYSVTFGSF----LGVSSIFAMFFKDQFGLSK-VTAGAYASLGGLLGSLARPLGGAISDR  287 (366)
T ss_pred             hhHHHHHHHHhccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhhccchHHHh
Confidence            00012445677776665554433333322    2456677777765 46666 778888888889999999999999999


Q ss_pred             cCCcchhhhhHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHH
Q 008615          423 LGRRPLLIGGVCGIALSLLLLSAYYKILGG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF  501 (559)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  501 (559)
                      +++|+.+..+......+..++....  ... +.+.......+...+.+.. .+..+.+..+..| +.+|+++|+.+..++
T Consensus       288 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  363 (366)
T TIGR00886       288 LGGARKLLMSFLGVAMGAFLVVLGL--VSPLSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGN  363 (366)
T ss_pred             hccchhHHHHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhcc
Confidence            9999887777666655554444321  111 2222222222233333333 3345577788877 689999999988876


Q ss_pred             HH
Q 008615          502 GS  503 (559)
Q Consensus       502 ~g  503 (559)
                      +|
T Consensus       364 ~g  365 (366)
T TIGR00886       364 LG  365 (366)
T ss_pred             CC
Confidence            65

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-29  Score=226.87  Aligned_cols=346  Identities=15%  Similarity=0.087  Sum_probs=259.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .+-..+++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++...++++++.++++.++++|.+||+|.++..+..
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCccc-chhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhcc
Q 008615          218 PLYIAETCPSQI-RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ  296 (559)
Q Consensus       218 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~  296 (559)
                      .++++|.+|+++ |++++|+.-.+.++|.++||++||.+.+.. |.+.+|++.++++++-..+.+++-|..+        
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~--------  251 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE--------  251 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence            999999998755 799999999999999999999999999988 9999999999999998887766544221        


Q ss_pred             CCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhCh
Q 008615          297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ  376 (559)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (559)
                                                               .+.+...+..++++++++|..+..............   
T Consensus       252 -----------------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~la---  287 (464)
T KOG3764|consen  252 -----------------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLA---  287 (464)
T ss_pred             -----------------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHH---
Confidence                                                     000122334467888888866544433222222111   


Q ss_pred             hhHHHhHHHH-HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHH--HHHHHHHHHhhcCc
Q 008615          377 PSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS--LLLLSAYYKILGGF  453 (559)
Q Consensus       377 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  453 (559)
                       ..---++.+ .++.. .+..+.|+......+...++..+.|.+.||++..+.+.....+..++  +....+....  ..
T Consensus       288 -fLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~--~~  363 (464)
T KOG3764|consen  288 -FLEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI--AQ  363 (464)
T ss_pred             -HhCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH--HH
Confidence             111122232 33444 55458899999999999999999999999999555444433333333  3333322110  11


Q ss_pred             hhHHHHHHHHHHHHhhcccccccceeecccCCcc---chhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHH
Q 008615          454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI  530 (559)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~  530 (559)
                      .+.....+++.++.......|.. .++.|.-..+   ..|...++......+|.++||.+.|.+.+..|+.|...+.++.
T Consensus       364 L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~  442 (464)
T KOG3764|consen  364 LWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGIL  442 (464)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHH
Confidence            22233334444444444455554 4444544444   7799999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHhh
Q 008615          531 AFLAVLFIVRT  541 (559)
Q Consensus       531 ~~~~~~~~~~~  541 (559)
                      .++...++.++
T Consensus       443 n~iyapvl~ll  453 (464)
T KOG3764|consen  443 NLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHH
Confidence            88777655543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.96  E-value=2.8e-27  Score=234.33  Aligned_cols=347  Identities=15%  Similarity=0.091  Sum_probs=235.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---Hhc-----hhHhHHHHHHHHHHhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-----PGLGVLLVGRLLYGLG  209 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-----~~~~~l~~~r~l~G~~  209 (559)
                      +|.+..+.|++.+++.+++.++++++|+++||+|||+.++.+.+..+++....   .+.     +.+..+++.|++.|++
T Consensus        33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  112 (396)
T TIGR00882        33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV  112 (396)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999988777665544332   112     1234456678889998


Q ss_pred             hhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc-cCCchH
Q 008615          210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPR  288 (559)
Q Consensus       210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~  288 (559)
                      .+...+....++.+..  +++++.++......++|.++||.+++.+.+ . +||++|++.+++.++..++.++ .+|+|+
T Consensus       113 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (396)
T TIGR00882       113 FSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGSGFALILMLLLMFAKPKAPS  188 (396)
T ss_pred             hccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            8888888887777643  334567788888899999999999998765 4 8999999998888876655544 333322


Q ss_pred             HHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHH
Q 008615          289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV  368 (559)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (559)
                      .                ++.++.   .+.                      .+++++..+.++++|++.++...+.....
T Consensus       189 ~----------------~~~~~~---~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  227 (396)
T TIGR00882       189 S----------------ATVANA---LGA----------------------NASAFSLKLALELFRQRKFWMFVLYVVGV  227 (396)
T ss_pred             h----------------hhhhcc---ccc----------------------ccCCCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence            0                000000   000                      00111112356778888766554433222


Q ss_pred             HHHHhhChhhHHHhHHHHHHHc----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHH
Q 008615          369 LFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS  444 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  444 (559)
                      ....    .....+.+.++.+.    +.+. ...+.......+...++.+..+++.||+++|+.+.++.++.++...+..
T Consensus       228 ~~~~----~~~~~~~~~y~~~~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~  302 (396)
T TIGR00882       228 ACVY----DVFDQQFANFFTSFFATPQQGT-RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS  302 (396)
T ss_pred             HHHH----HHHHHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            2221    12333445555443    2333 4567778888888888999999999999999999888877777665544


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH-HHHHHHHHHHHHHHhhHHHHHhcCchhh
Q 008615          445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELLGAENI  523 (559)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~i~g~l~~~~g~~~~  523 (559)
                      .     ..+.+..+... +..+............+..+..|++.++++.+. .+....+|+.+++.+.|.+.|..|+...
T Consensus       303 ~-----~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~  376 (396)
T TIGR00882       303 F-----ATTALEVVILK-MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA  376 (396)
T ss_pred             h-----cCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence            2     12333333222 222222222222233456677788888887766 5678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 008615          524 FLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       524 ~~~~~~~~~~~~~~~~~  540 (559)
                      |.+.+++.++..++..+
T Consensus       377 f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       377 YLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988888777765543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.7e-27  Score=214.68  Aligned_cols=364  Identities=19%  Similarity=0.210  Sum_probs=278.1

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 008615          105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  184 (559)
                      .+....+++|+........+|.+.+-       |+++..|.+++..+++.+|.+.+++.|.+.+|+|+|+.+++|+.+++
T Consensus        17 ~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a   89 (422)
T COG0738          17 LLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA   89 (422)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence            34444678888888888888888876       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC---
Q 008615          185 LGALTTA---YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---  258 (559)
Q Consensus       185 i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---  258 (559)
                      +++.+..   ...+|..++++-++.|.|.+...+.+..++....++++..+.+++.+..+++|.++||++++.++..   
T Consensus        90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~  169 (422)
T COG0738          90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA  169 (422)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence            9999984   5678999999999999999999999999999999998889999999999999999999999988762   


Q ss_pred             ---------------CCcchHHHhhhHHHHHHHHHHhhc--cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCC
Q 008615          259 ---------------VGGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG  321 (559)
Q Consensus       259 ---------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (559)
                                     ...||++|...+...++..+....  +|+.+.                                 
T Consensus       170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------  216 (422)
T COG0738         170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------  216 (422)
T ss_pred             hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc---------------------------------
Confidence                           115888888888877776666544  333221                                 


Q ss_pred             CchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHH
Q 008615          322 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV  401 (559)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (559)
                                     ..+.+.++++....+++++|+++...++.+++.....    ....|.+.++.+....+..++...
T Consensus       217 ---------------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~~g~~~~~aa~~  277 (422)
T COG0738         217 ---------------AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEELLGLNEQQAAYY  277 (422)
T ss_pred             ---------------ccccccccccchHHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhcCCccHHHHHHH
Confidence                           0000111111146788999988888877666666554    577788888888444333889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeec
Q 008615          402 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS  481 (559)
Q Consensus       402 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (559)
                      .+....+.++|++++.++..|+...+.+....++..+.++...+.     + ....+. ..+..+++.....|..++...
T Consensus       278 ~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-----~-g~v~~~-~l~~ig~F~simfPTIfslal  350 (422)
T COG0738         278 LSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-----G-GVVALY-ALFLIGLFNSIMFPTIFSLAL  350 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-----c-ChHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999888877665554444444431     2 233333 333444555556677778888


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          482 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       482 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      +..| ++...+ |....+..+|+++.|++.|++.|..|....+.....+|.+..+
T Consensus       351 ~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~  403 (422)
T COG0738         351 KNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVL  403 (422)
T ss_pred             hccC-cccccc-ceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            8888 443333 3344456788899999999999999987777655555555543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=4.6e-27  Score=263.25  Aligned_cols=345  Identities=15%  Similarity=0.028  Sum_probs=242.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH---HHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhh
Q 008615          142 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII---AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP  218 (559)
Q Consensus       142 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~  218 (559)
                      ....++..+++.+.+.++++++|+++||+|||+++..   +.++.++..+++...+++++++++|+++|++.+...|+..
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence            3568899999999999999999999999999998633   3333333333344458999999999999999999999999


Q ss_pred             hhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCC
Q 008615          219 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGK  298 (559)
Q Consensus       219 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~  298 (559)
                      +++.+++++++|++++++.+++.++|.++||++++++.... +|++.|++.++..++.+++.+++|+++.-        +
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  201 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA--------A  201 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--------C
Confidence            99999999999999999999999999999999999998877 99999966666666666666667665320        0


Q ss_pred             CchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhh
Q 008615          299 GSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPS  378 (559)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (559)
                      ...+.                  +.   ....             .....++.+++++.++...+...+.++...    .
T Consensus       202 ~~~~~------------------~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  243 (1140)
T PRK06814        202 PDLKI------------------DR---NIIR-------------STITLLKYAKADKRIWLAILGISWFWLVGA----V  243 (1140)
T ss_pred             CCCee------------------cc---chHH-------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHH----H
Confidence            00000                  00   0000             001135566777777776665555444332    3


Q ss_pred             HHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHH----------
Q 008615          379 VLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY----------  447 (559)
Q Consensus       379 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------  447 (559)
                      +..+.|.++++ ++.+. ...+++....+++.++|.++.|++.++..+++.+..+.++.+++.+.+.+..          
T Consensus       244 ~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  322 (1140)
T PRK06814        244 VLSQLPLLAKETLGGDE-NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQL  322 (1140)
T ss_pred             HHHHhHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccc
Confidence            55577888766 46665 7899999999999999999999999888777766665555555444333210          


Q ss_pred             -----HhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-cCch
Q 008615          448 -----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAE  521 (559)
Q Consensus       448 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~  521 (559)
                           .....+.+...+..+++ +++.....+...+++++..|++.+|+++|+.+++..++..+++.+.|.+.+. .++.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~  401 (1140)
T PRK06814        323 KSILVFLSKRHGWRILIDLFGL-AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP  401 (1140)
T ss_pred             cchhhhhcccccHHHHHHHHHH-HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence                 00012223333333333 3333334444568889999999999999999999999999999999998753 3444


Q ss_pred             hhHHHHHHHHHHHH
Q 008615          522 NIFLLFAAIAFLAV  535 (559)
Q Consensus       522 ~~~~~~~~~~~~~~  535 (559)
                      ..+++.+++.++..
T Consensus       402 ~~~~~~~~~~~~~~  415 (1140)
T PRK06814        402 WIILFIALANLIVA  415 (1140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55554444433333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.96  E-value=2.6e-26  Score=227.62  Aligned_cols=396  Identities=15%  Similarity=0.106  Sum_probs=240.7

Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH
Q 008615           97 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL  176 (559)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~  176 (559)
                      ++.+..+...++......+.....+..++.+..+       +|- .....|+.+.+.++.+++.++.|+++|.||||.++
T Consensus        40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~  111 (599)
T PF06609_consen   40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-------IGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF  111 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Confidence            3344333334443333333444445555666655       774 57788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008615          177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI  256 (559)
Q Consensus       177 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  256 (559)
                      +.+.++..+|++.++.++|...++++..+.|+|.|.... ....++|..|.|.|....++.....-....+++.++..+.
T Consensus       112 i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  112 IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence            999999999999999999999999999999999886664 5566899999999988887777665555557777777665


Q ss_pred             CCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHh------------------hcCC
Q 008615          257 NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGK------------------LRRR  318 (559)
Q Consensus       257 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~  318 (559)
                      ... +|||.|++.++...+.+++.+++..+|++-..+.+     ...+.++ .+.++.                  ..+.
T Consensus       191 ~~~-~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~-----~~s~~~~-l~~lD~IG~~L~~~Gl~LfLlgl~wgG~  263 (599)
T PF06609_consen  191 AHS-GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGR-----KLSKREQ-LKELDWIGIFLFIAGLALFLLGLSWGGY  263 (599)
T ss_pred             cCC-CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccc-----cCcHHHH-HHHhhHHHHHHHHHHHHHHHHHHhccCC
Confidence            555 99999999998877766555333233332211110     0011111 111111                  0111


Q ss_pred             CCCCchhhHHHHHHH---HH-----hhhccccccccccchhhcccCc-hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 008615          319 PPGDKLSERQIEDTL---VS-----LKSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS  389 (559)
Q Consensus       319 ~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (559)
                      ...++.+..-+.-..   .-     .-|.....+++.--.++||+++ +...+++.++....+    +....+-|.....
T Consensus       264 ~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~----~s~~~l~p~~~~~  339 (599)
T PF06609_consen  264 PYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNF----FSVNILWPQQVVN  339 (599)
T ss_pred             CCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Confidence            112222221111100   00     0011111122233456777743 222222222222222    2333344443333


Q ss_pred             -cCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchh-hhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 008615          390 -AGFSAA--ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYV  465 (559)
Q Consensus       390 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (559)
                       ++.+..  ...++...+.+++..+|.++.|.+..+++|-|.. +++.+++.+++.++....   .++....+...++..
T Consensus       340 vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---~~n~~~~i~~~~l~g  416 (599)
T PF06609_consen  340 VFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---PDNKNAAIAFLVLAG  416 (599)
T ss_pred             hccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc---CCCcchHHHHHHHHH
Confidence             222221  2467788888899999999999999988875554 456555555545554332   222222233333333


Q ss_pred             HHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008615          466 GCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE  516 (559)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  516 (559)
                      .+.+.... ......+-..|++.-|++.|+..+++.+|+.++..++..+..
T Consensus       417 ~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  417 FGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333322 333566667899999999999999999999999999876553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=2.9e-26  Score=258.02  Aligned_cols=342  Identities=17%  Similarity=0.054  Sum_probs=236.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH---hchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       141 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +....+++.+++.+++.++++++|+++||+|||++++++.++.+++.+++.   .+++++.++++|+++|++.+...+..
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  124 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK  124 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence            456689999999999999999999999999999999998877666555443   45789999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC--------CCcchHHHhhhHHHHH-HHHHHhhccCCchH
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--------VGGWRYMYGLSAPLAL-LMGIGMWSLPPSPR  288 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~~~wr~~f~~~~~~~~-~~~~~~~~~~e~p~  288 (559)
                      .+++.|++|+++|++++++...+..+|.++|+++++++...        ..+|++.+.+.++... +.+++.+.+||+|.
T Consensus       125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (1146)
T PRK08633        125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA  204 (1146)
T ss_pred             HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            99999999999999999999999999999999999998765        3245555544443333 33444456777653


Q ss_pred             HHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHH
Q 008615          289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV  368 (559)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (559)
                      ....+         .               +.....                ........++.+++++.++..++...+.
T Consensus       205 ~~~~~---------~---------------~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~  244 (1146)
T PRK08633        205 AAPEV---------F---------------DKKKYL----------------FPKLLWRNLKLLRSDRVLWLAIIGLSYF  244 (1146)
T ss_pred             CCccc---------c---------------cccccc----------------cHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            11000         0               000000                0000011245567777666555544443


Q ss_pred             HHHHhhChhhHHHhHHHHHH-HcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHH
Q 008615          369 LFQQITGQPSVLYYAGPILQ-SAGFSAAA-DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY  446 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  446 (559)
                      ++...    .+..+.|.++. ..+.+. . ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++.+.
T Consensus       245 ~~~~~----~~~~~~~~~~~~~~g~s~-~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  319 (1146)
T PRK08633        245 WFISQ----LAQANFPAYAKEVLGLDN-TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA  319 (1146)
T ss_pred             HHHHH----HHHHhhHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence            33322    34445566654 467766 5 78889999999999999999999999999988887777777666655532


Q ss_pred             HHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC--chhhH
Q 008615          447 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIF  524 (559)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~~  524 (559)
                           .+.+..++.. ++.+++.....+...+++.+..|++.||+++|+.+++..++.++++.+.+.+.. .+  +...+
T Consensus       320 -----~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~  392 (1146)
T PRK08633        320 -----PSLASVLVLF-FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLF  392 (1146)
T ss_pred             -----hhHHHHHHHH-HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHH
Confidence                 1222222333 333333333334445788899999999999999999999998877776655543 33  33445


Q ss_pred             HHHHHHHHHH
Q 008615          525 LLFAAIAFLA  534 (559)
Q Consensus       525 ~~~~~~~~~~  534 (559)
                      ++.+.+.++.
T Consensus       393 ~~~~~~~~~~  402 (1146)
T PRK08633        393 YLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=7.2e-26  Score=226.04  Aligned_cols=378  Identities=21%  Similarity=0.203  Sum_probs=273.5

Q ss_pred             cchhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 008615           93 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR  172 (559)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr  172 (559)
                      +...+..|..-++..++..+......++       ..+       ..-|+..++++..+..+...+.++++|.++||+.|
T Consensus         9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wl-------v~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr   74 (524)
T PF05977_consen    9 NRNFRRLWIAQLISNLGDWMQTVALAWL-------VTQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDR   74 (524)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            3445556666666666666665544442       222       45589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-----hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHH
Q 008615          173 KRELIIAAVLYALGALTTAYA-----PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL  247 (559)
Q Consensus       173 r~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  247 (559)
                      |++++.+.++.++..++.++.     .+.+.+++.-++.|++.+...|...+++.|..|+++...++++.+...++..++
T Consensus        75 rrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i  154 (524)
T PF05977_consen   75 RRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII  154 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc
Confidence            999999998877665555432     478899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhH
Q 008615          248 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSER  327 (559)
Q Consensus       248 g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (559)
                      ||.++|.++... |-.+.|++.++..++.++.....++.+.       +.+.    ..|   +.                
T Consensus       155 GPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~-------~~~~----~~e---~~----------------  203 (524)
T PF05977_consen  155 GPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPP-------PSSL----PRE---RF----------------  203 (524)
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccc-------cccc----chh---hh----------------
Confidence            999999988877 8888999888776665544443332111       0000    000   00                


Q ss_pred             HHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHH
Q 008615          328 QIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIG  406 (559)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  406 (559)
                                    .+.-+..++-+.++|..+..++...+..+..    ..+...+|.+.++ .+.++ ...|++....+
T Consensus       204 --------------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~----~a~~aLlPl~a~~~l~~~a-~~yGll~a~~g  264 (524)
T PF05977_consen  204 --------------FSALREGLRYVRSSPPLRSVLLRSFLFNLFA----SAVWALLPLFARDVLGGGA-SGYGLLLAAFG  264 (524)
T ss_pred             --------------hhhHHHHHHHHhcchHHHHHHHHHHHHHHhh----hHHHHhhhHHHHHHhCCcH-HHHHHHHHHHH
Confidence                          0000112334444555554443333322221    1234456777655 55555 78999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCc
Q 008615          407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL  486 (559)
Q Consensus       407 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  486 (559)
                      ++.++|.++.+++.+|+++++++..+.++.+++++.+++.     .+.+.....+++. |...........+..++..|+
T Consensus       265 vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-----~~~~~~~~~l~l~-G~~~~~~~~~~~t~~Q~~~P~  338 (524)
T PF05977_consen  265 VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-----PSFWLALIALFLA-GAAWIIANSSLNTLVQLSVPD  338 (524)
T ss_pred             HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999999998888888877777666642     2334333333333 333333344445778899999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHh
Q 008615          487 RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       487 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      +.||+++++.++....+..+|..+.|.+.+..|....+.+.+++.+++.++.+.
T Consensus       339 ~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  339 WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888888777666666554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7e-25  Score=197.83  Aligned_cols=355  Identities=22%  Similarity=0.195  Sum_probs=271.3

Q ss_pred             cccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchh
Q 008615          116 DIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG  195 (559)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  195 (559)
                      ....++|.++.+..+       +|+|.+.+|+++++..+..++.+++..+++.|+|.++.+..++++.++|.++-... +
T Consensus        27 ~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~   98 (395)
T COG2807          27 AITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G   98 (395)
T ss_pred             hhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c
Confidence            345566677766666       99999999999999999999999999999999999999999999999999998887 7


Q ss_pred             HhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHH
Q 008615          196 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL  275 (559)
Q Consensus       196 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~  275 (559)
                      .+.++.+-.+.|.|.+......+.++.+.|| |+-+..+++|.+..++|..+++.+...+.++..+||....+.+.++++
T Consensus        99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all  177 (395)
T COG2807          99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL  177 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999997 558999999999999999999999988887766899999999999998


Q ss_pred             HHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhccc
Q 008615          276 MGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG  355 (559)
Q Consensus       276 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (559)
                      .++.++.-.  .|.                            +                    ....+.+..+...++|+
T Consensus       178 Al~~WlPq~--~r~----------------------------~--------------------~~~~~~~~~~~~~vw~~  207 (395)
T COG2807         178 ALLIWLPQA--LRE----------------------------Q--------------------AASIATKLVSVRKVWRS  207 (395)
T ss_pred             HHHHHhhhc--ccc----------------------------c--------------------ccccccccccccccccC
Confidence            887776421  110                            0                    00112222344568999


Q ss_pred             CchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cchhhhhHH
Q 008615          356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVC  434 (559)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~  434 (559)
                      |.-|.+.+.+.+..+.+    +....|+|.++.+.|++. .++|.+.....+..++.++....+.+|... |+..+....
T Consensus       208 ~~aW~vtLfmGlqS~~~----Y~~~~WLP~ili~~G~sa-~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~  282 (395)
T COG2807         208 PLAWQVTLFMGLQSLLY----YIVIGWLPAILIDRGLSA-AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL  282 (395)
T ss_pred             chhHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCCCH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            98888776665555544    468899999999999998 899999999999999999999999997654 555555555


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeeccc-CCccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 008615          435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSP  513 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~  513 (559)
                      ++.++.+.+.+.   + .+.+...   .+..+....+..++..+.+... -.++..+.-.|+.+.++++-++.+|.++|.
T Consensus       283 ~~l~G~~G~~~~---P-~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         283 LMLVGLVGLLLA---P-GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             HHHHHHHHHHHh---h-hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence            555655555432   1 2222222   1222333233344443444443 345777888899999999999999999999


Q ss_pred             HHHhcC-chhhHHHHHHHHHHHHHHHHhh
Q 008615          514 LKELLG-AENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       514 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      +.|..| |...+..++.+.++..+.-+..
T Consensus       356 lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         356 LHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            999988 5555655555555555544443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.95  E-value=2.4e-25  Score=223.40  Aligned_cols=391  Identities=12%  Similarity=0.083  Sum_probs=237.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhchhHhH-HHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGV-LLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~  215 (559)
                      +|++..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++.+... ++++|+++|+|.|...+
T Consensus        45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~  124 (489)
T PRK10207         45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA  124 (489)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence            89999999999999999999999999999999 99999999999999999999999876554 55789999999999999


Q ss_pred             hhhhhhhccCCcc--cchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHh
Q 008615          216 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR  293 (559)
Q Consensus       216 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~  293 (559)
                      ...+++.|.+|++  +|+++++++..+.++|.++||.+++++.+.. |||+.|++.++..++..+..++.++..+   .+
T Consensus       125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~~~~~---~~  200 (489)
T PRK10207        125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACRGMVK---DI  200 (489)
T ss_pred             CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcchhhc---cc
Confidence            9999999999877  4578999999999999999999999999888 9999999965543333333333332111   00


Q ss_pred             hccCCCchhhhHHHHHH---------HHHhhcCCCCCCchhhHHH-HHHHHHh-hhccccccccccchhhcccCchhHHH
Q 008615          294 AVQGKGSLQEYKEQAIS---------ALGKLRRRPPGDKLSERQI-EDTLVSL-KSSYTDEKSEGSFLEVFQGPNLKAFI  362 (559)
Q Consensus       294 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (559)
                      +.+++.+..+.......         .........   ....... ....... .--.++.+    ..+.+|++.+....
T Consensus       201 ~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~f~~~~~~----~~~~~r~r~~~~~~  273 (489)
T PRK10207        201 GSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV---EVANLVLIVLSIVVTIIFFREAFK----LDKTGRNKMFVAFV  273 (489)
T ss_pred             CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Confidence            00000000000000000         000000000   0000000 0000000 00000000    01344544333222


Q ss_pred             HH--HHHHHHHHhhChhhHHHhHHHHHHH-cCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch-------h
Q 008615          363 IG--GGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-------L  429 (559)
Q Consensus       363 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~  429 (559)
                      +.  ..+.+..+    ....+..+.+.++ ....   -......+.....+..++..++.+++.||+++|+.       +
T Consensus       274 l~~~~~~f~~~~----~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~  349 (489)
T PRK10207        274 LMLEAVVFYILY----AQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHH----HHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            11  11122222    2232333444442 2111   00133445555556676778888999999998873       6


Q ss_pred             hhhHHHHHHHHHHHHHHH---H-hhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHH
Q 008615          430 IGGVCGIALSLLLLSAYY---K-ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA  505 (559)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~  505 (559)
                      .+++++.+++++.+....   . .....+.+.++...++.+.......+....++.+..|++.++.++|+.+....+|+.
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~  429 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL  429 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            677777776665443211   1 111122333334444455555556666668888889999999999999999999999


Q ss_pred             HHHHhhHHHHH----------hcCchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          506 IVTFAFSPLKE----------LLGAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       506 i~~~i~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      ++..+......          ...+.+.|...++..+++.++.+...|
T Consensus       430 lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        430 LGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98887754421          112345666666666666655554433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=207.86  Aligned_cols=357  Identities=19%  Similarity=0.148  Sum_probs=224.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .+.+....|.+.+.|++++.+.++.+|.++||+|||+++++|++..++..++.+.+.||..++++|++.|+..| ...+.
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~  141 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI  141 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence            34577788999999999999999999999999999999999999999999999999999777777999999988 67888


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccC---CCCcchHH--HhhhHHHHHH-HHHHhhccCCchHHHH
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN---AVGGWRYM--YGLSAPLALL-MGIGMWSLPPSPRWLL  291 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---~~~~wr~~--f~~~~~~~~~-~~~~~~~~~e~p~~~~  291 (559)
                      .++++|.+++|+|+++++.....+++|.++||.+|+++..   ..+.+...  -++..++... .....+++||+-....
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk  221 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK  221 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence            9999999999999999999999999999999999999877   22112111  1222222222 3334577899842100


Q ss_pred             HhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHH---HHHH
Q 008615          292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG---GGLV  368 (559)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  368 (559)
                      ++      +.+....++.+...                     +..    +. ....-...+||+.....+..   +.+.
T Consensus       222 ~~------~~~~~~~~~~~~~~---------------------~~~----~~-~~~~~v~~lrn~p~~~~i~~~~i~~l~  269 (451)
T KOG2615|consen  222 RN------DEHSTLQEAADDRL---------------------ALL----KF-ARIFKVAALRNPPLLDFISVLRIFGLH  269 (451)
T ss_pred             hc------ccccchhhhhhhhh---------------------hhc----ch-hhhhhhhhhcCccccchHHHHHHHHHH
Confidence            00      00000000000000                     000    00 00011123334332221111   1122


Q ss_pred             HHHHhhChhhHHHhHHHH-HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CcchhhhhHHHHHHHHHHHHH
Q 008615          369 LFQQITGQPSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGGVCGIALSLLLLSA  445 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~  445 (559)
                      .+.+...+..+.++...+ -..+|+++ .+.|.+....++...+......+..+|.+  .+..+..+..++.-.++++..
T Consensus       270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss-~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~  348 (451)
T KOG2615|consen  270 YFLYLELFSGLENTVLFLTHGRFGYSS-MQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL  348 (451)
T ss_pred             HHHHHHHHHHHHhhHHHhhcCccCCCh-hhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc
Confidence            222222222333333333 15578888 77888887777777777766666666655  333444444444443333332


Q ss_pred             HHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchhhH
Q 008615          446 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIF  524 (559)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-g~~~~~  524 (559)
                           ...+..+.....+....... ..+....+.....|+++||+++|+....+.++-++||.+.|.+..+. +-+..+
T Consensus       349 -----~~~~~~l~~~s~l~sf~~A~-~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~  422 (451)
T KOG2615|consen  349 -----ARTPVVLYLGSTLKSFSTAS-VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAY  422 (451)
T ss_pred             -----cccchhhhHHHHHHHHHHHH-hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCcee
Confidence                 12233333333444333333 34445578888999999999999999999999999999998887643 333444


Q ss_pred             HHHHHHHHHH
Q 008615          525 LLFAAIAFLA  534 (559)
Q Consensus       525 ~~~~~~~~~~  534 (559)
                      ...+.+.++.
T Consensus       423 ~~~~~L~~~~  432 (451)
T KOG2615|consen  423 IAWGALLLIP  432 (451)
T ss_pred             eehHHHHHHH
Confidence            4444444444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=4.3e-26  Score=234.98  Aligned_cols=373  Identities=18%  Similarity=0.198  Sum_probs=255.6

Q ss_pred             HHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 008615          109 GGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  188 (559)
                      ..+..+...+.++..++.+.++       |+++..+.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            4444455566777777777666       999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhch---------------------------------------------------hHhHHHHHHHHHHhhhhhhhhhh
Q 008615          189 TTAYAP---------------------------------------------------GLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       189 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      ++++.+                                                   .+..++++|+++|+|.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            998763                                                   24567889999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCC---------------------cchHHHhhhHHHHHHH
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG---------------------GWRYMYGLSAPLALLM  276 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~---------------------~wr~~f~~~~~~~~~~  276 (559)
                      .+++.|++|+++|+++++++..+..+|.++|+++++++.+.+.                     +||..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998775321                     2777888888888877


Q ss_pred             HHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC
Q 008615          277 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP  356 (559)
Q Consensus       277 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (559)
                      .+.++++|+..+.        +... .+.+..++.  ......+..+   ....         ...+.....++.++++|
T Consensus       274 ~v~l~~~p~~lp~--------~~~~-~~~~~~~~~--~~~~~~~~~~---~~~~---------~~~~~~~~~~~~Ll~n~  330 (633)
T TIGR00805       274 SIPFFFFPKALPK--------EGKR-VNVDVHETE--KLEKSEDKSR---KKNS---------DITKDFPKIIKRLLCNP  330 (633)
T ss_pred             HHHHHhCccccCC--------cccc-cchhhhhhh--cccccccccc---hhhh---------hhHHHHHHHHHHHHcCc
Confidence            6666667664210        0000 000000000  0000000000   0000         00011123466789998


Q ss_pred             chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhcCC--cchhhhh
Q 008615          357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLIGG  432 (559)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~  432 (559)
                      .++...+..++.....    ..+..|.|.++++ ++.+. ..++++.....+ +.++|.+++|+++||++.  |+.+..+
T Consensus       331 ~f~~~~l~~~~~~~~~----~~~~~~lP~yl~~~~g~s~-~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~  405 (633)
T TIGR00805       331 IYMLVILAQVIDSLAF----NGYITFLPKYLENQYGISS-AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFA  405 (633)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHH
Confidence            7776666555544433    3577789999875 66665 778877776665 568999999999999985  4555555


Q ss_pred             HHHHHHHHHHHHHHHHh-----------------------h----------c----------------------------
Q 008615          433 VCGIALSLLLLSAYYKI-----------------------L----------G----------------------------  451 (559)
Q Consensus       433 ~~~~~~~~~~~~~~~~~-----------------------~----------~----------------------------  451 (559)
                      .++..++.++.......                       .          .                            
T Consensus       406 ~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~  485 (633)
T TIGR00805       406 ICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGT  485 (633)
T ss_pred             HHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCC
Confidence            55555554332210000                       0          0                            


Q ss_pred             ----------------------C------ch-hH-HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHH-H
Q 008615          452 ----------------------G------FP-LV-AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-N  500 (559)
Q Consensus       452 ----------------------~------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~  500 (559)
                                            .      .. .. .++.+++...+......|.. ..+-..+|+++|+.+.|+...+ +
T Consensus       486 ~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~r  564 (633)
T TIGR00805       486 GSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMR  564 (633)
T ss_pred             CCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHHH
Confidence                                  0      00 11 11222222233333444555 5666788999999999999876 6


Q ss_pred             HHHHHHHHHhhHHHHHh
Q 008615          501 FGSNAIVTFAFSPLKEL  517 (559)
Q Consensus       501 ~~g~~i~~~i~g~l~~~  517 (559)
                      -+|.+-+|+++|.++|.
T Consensus       565 llg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       565 VFATIPAPILFGLLIDV  581 (633)
T ss_pred             HhcCCChhHHHhhhhhc
Confidence            66889999999999985

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=9.9e-26  Score=226.83  Aligned_cols=329  Identities=16%  Similarity=0.109  Sum_probs=226.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hchH-HHHHHHHHHHHHHHHHHHhchh------HhHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY  206 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~  206 (559)
                      +|+++.++|++.++..+..++..|+.|+++||    +||| +.++.+...++++.+++.+.++      +..+++.+++.
T Consensus        30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (437)
T TIGR00792        30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL  109 (437)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999997    6874 4677888888888888877654      45667788889


Q ss_pred             HhhhhhhhhhhhhhhhccC-CcccchhhhhHHHHHHHHHHHHHHHhhhcccC------CCCcchHHHhhhHHHHHHHHHH
Q 008615          207 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~~wr~~f~~~~~~~~~~~~~  279 (559)
                      +++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+..      ...+||+.+++.++++++..+.
T Consensus       110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  189 (437)
T TIGR00792       110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII  189 (437)
T ss_pred             HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            9988887778888888887 46889999999999888888777666544432      1228999999999888876655


Q ss_pred             h-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          280 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       280 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      . +..+|.++.              +              +..+                 .++.+.+..++.++++|.+
T Consensus       190 ~~~~~~e~~~~--------------~--------------~~~~-----------------~~~~~~~~~~~~l~~~~~~  224 (437)
T TIGR00792       190 CFFGTKERYSE--------------I--------------PKNI-----------------EKKLSLKQIFKALFKNDQL  224 (437)
T ss_pred             HHcCCEecCCC--------------C--------------Cccc-----------------ccCCCHHHHHHHHhCCHHH
Confidence            4 445553310              0              0000                 0000011234567778777


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +...+..++..+...    ....+.+.+.+....+. ...+.+.....++.+++.++.+++.||+|+|+.+..+.++.++
T Consensus       225 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       225 LILCLAYLFYNLAFN----IKNGVQVYYFTYVLGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHH----HHcchhheeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            665554444433322    22223333333322222 5566677777899999999999999999999999888877777


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      +.+.+.+.    .++.+...+ ..+..++......+..+++..|..+       ++.+|.+.|+.+++..+|..+++.+.
T Consensus       300 ~~~~~~~~----~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       300 GYLIFFFA----GSNLPLILV-LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHc----chhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555431    122222222 2222333323334455566677654       56689999999999999999999999


Q ss_pred             HHHHHhcCch
Q 008615          512 SPLKELLGAE  521 (559)
Q Consensus       512 g~l~~~~g~~  521 (559)
                      |.+.+..|+.
T Consensus       375 g~ll~~~G~~  384 (437)
T TIGR00792       375 GLILGIIGYV  384 (437)
T ss_pred             HHHHHHcCCC
Confidence            9999988763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.94  E-value=1.4e-24  Score=217.98  Aligned_cols=393  Identities=12%  Similarity=0.043  Sum_probs=245.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +|++..+.+++.+.+.+++.++++++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~  122 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN  122 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence            78999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCccc---chhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHh
Q 008615          217 APLYIAETCPSQI---RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR  293 (559)
Q Consensus       217 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~  293 (559)
                      ..++++|++|+++   |+++++++..+.++|.++||++++++.+.. |||+.|++.++..++..+..++.++..+   .+
T Consensus       123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~~~~~---~~  198 (475)
T TIGR00924       123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGRHMLR---DI  198 (475)
T ss_pred             HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcccccc---cC
Confidence            9999999998754   888999999999999999999999988877 8999999988665554444433322110   00


Q ss_pred             hccCCCchhhhH-HHHHHHH----------Hh-hcCCCCCCchhhHHHHH---HHHHhhhccccccccccchhhcccC--
Q 008615          294 AVQGKGSLQEYK-EQAISAL----------GK-LRRRPPGDKLSERQIED---TLVSLKSSYTDEKSEGSFLEVFQGP--  356 (559)
Q Consensus       294 ~~~~~~~~~~~~-~~~~~~~----------~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--  356 (559)
                      +.+++ +.+.+. +..+...          .. ....+. ..  ......   ............++  ...+.-|++  
T Consensus       199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  272 (475)
T TIGR00924       199 GSVPD-PLSGQGKTYGKLLLALLAALALVFFCAWLMHHV-VI--ANILLMTVTLAVIIFFFRLAFKP--RLDAVARNKMY  272 (475)
T ss_pred             CCCCC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-HH--HHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhHHH
Confidence            00000 000000 0000000          00 000000 00  000000   00000000000000  011111111  


Q ss_pred             chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----cc
Q 008615          357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-----RP  427 (559)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~  427 (559)
                      .+..+.+...+.+..    +.......+.+.++ .+..   .....+.+.....+..++..++..++-.|..|     +.
T Consensus       273 ~~l~l~~~~~~~~~~----~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~  348 (475)
T TIGR00924       273 AYIVLFLEAVVFWVL----YAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTT  348 (475)
T ss_pred             HHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            111122222222222    22223333333333 2211   11236677777777777776665543333333     33


Q ss_pred             hh--hhhHHHHHHHHHHHHHHHHhhc---CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 008615          428 LL--IGGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG  502 (559)
Q Consensus       428 ~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  502 (559)
                      ..  .+++++.++++..+.+......   ..+.+.++...++.+.......|...++..+..|++.||+.+|+......+
T Consensus       349 ~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~  428 (475)
T TIGR00924       349 PLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM  428 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            33  5677777777666654211111   123334444555555666667778889999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          503 SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       503 g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      |..+++.+.....+..++...|...++++++..++.++..|.
T Consensus       429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988877777777777887777777776666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=1.2e-25  Score=219.47  Aligned_cols=326  Identities=14%  Similarity=-0.002  Sum_probs=222.9

Q ss_pred             ccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----chHHH-HHHHHHHHHHHHHHHHh
Q 008615          119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAY  192 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~  192 (559)
                      .+++.+|.+.++       +|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++..++.++
T Consensus         6 ~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~   76 (356)
T TIGR00901         6 LVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF   76 (356)
T ss_pred             hHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence            344455556555       89999999999766 555555 99999999998     89887 56778888888777777


Q ss_pred             c---hhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCc--------
Q 008615          193 A---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG--------  261 (559)
Q Consensus       193 ~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~--------  261 (559)
                      .   .+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.... +        
T Consensus        77 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~  155 (356)
T TIGR00901        77 LVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITL  155 (356)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc
Confidence            6   466677778888899999899999999999999999999999999999999999999999887776 6        


Q ss_pred             chHHHhhhHHHHHHHHHHhhc-cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcc
Q 008615          262 WRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY  340 (559)
Q Consensus       262 wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (559)
                      ||..|++.++..++..+..++ .+|+.+.        +  .+++ +                     +            
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~--------~--~~~~-~---------------------~------------  191 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEPQED--------A--SVPK-P---------------------L------------  191 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCcc--------c--ccch-h---------------------H------------
Confidence            999999999887776655543 4553210        0  0000 0                     0            


Q ss_pred             ccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHH-HHHHHHHHHHHHH
Q 008615          341 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAK  419 (559)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l  419 (559)
                       .++.+..++++++++..+..........+. .........+.|.++++.|++. .+.+......+ +..+++.++++++
T Consensus       192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~-~~~g~~~~~~~~~~~~~g~~~~g~l  268 (356)
T TIGR00901       192 -TQAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGDSAATVLTTLFLLDMGFSK-EEIALVAKINGLLGAILGGLIGGII  268 (356)
T ss_pred             -HHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence             000011244556665522222222221111 1222345667788888877776 66676666555 6778999999999


Q ss_pred             hhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc-----CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHH
Q 008615          420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-----GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS  494 (559)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  494 (559)
                      .||+|+|+.+..+.++.+++..++.+......     ......+....++.++......+...++..|.+|+++||+.+|
T Consensus       269 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g  348 (356)
T TIGR00901       269 MQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMA  348 (356)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence            99999999988887777766555443211100     0122222323333333333344556689999999999999999


Q ss_pred             HHHHHHH
Q 008615          495 LAVLTNF  501 (559)
Q Consensus       495 ~~~~~~~  501 (559)
                      +.+...+
T Consensus       349 ~~~~~~~  355 (356)
T TIGR00901       349 LLSSLSA  355 (356)
T ss_pred             HHHHHHh
Confidence            9887653

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.94  E-value=8.9e-25  Score=215.93  Aligned_cols=370  Identities=16%  Similarity=0.026  Sum_probs=247.6

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHH--HHHHHHHHHHHHHHHHH-hhhhhchHHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLV--VSGSLYGALLGSILVYS-IADFLGRKRELIIAAVL  182 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~g~-l~dr~Grr~~~~~~~~~  182 (559)
                      +...++..|...+...+.+|...++       .|.+.+++|++  .+++.+...+.+++++. ..||+||||..++.+.+
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~   78 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQC   78 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHH
Confidence            3344577788888888888888877       89999999997  46678888888888854 78999999987655533


Q ss_pred             H-HHHHHHHH---hchh-HhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccC
Q 008615          183 Y-ALGALTTA---YAPG-LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN  257 (559)
Q Consensus       183 ~-~i~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~  257 (559)
                      . ++.....+   ...+ ..+++..-++.++..+...+....+..|..++++++...+....+..+|.++|+.+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~  158 (390)
T TIGR02718        79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG  158 (390)
T ss_pred             HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 22222222   2222 33445555666777777888888888899988888888999998889999999988888888


Q ss_pred             CCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhh
Q 008615          258 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK  337 (559)
Q Consensus       258 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (559)
                      .. |||..|++.+++.++..+..++++|+++        ++    .+                 .               
T Consensus       159 ~~-gw~~~f~~~a~l~~~~~~~~~~~~~~~~--------~~----~~-----------------~---------------  193 (390)
T TIGR02718       159 KF-GQRPAFLLVACVPLASLVCVLWLKDRAV--------AS----PE-----------------A---------------  193 (390)
T ss_pred             Hh-CHHHHHHHHHHHHHHHHHHHHHcCCCCc--------Cc----cc-----------------c---------------
Confidence            77 9999999999888876666555544321        00    00                 0               


Q ss_pred             hccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHH-HHHHHHHHHH
Q 008615          338 SSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIA  416 (559)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  416 (559)
                          ++++..++++.+|+|..+...+..++......    ....+.+.++++.|++. .+.+......+ ...+++.++.
T Consensus       194 ----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~G~s~-~~ig~~~~~~~~~~~~~g~~~~  264 (390)
T TIGR02718       194 ----PLARRASLFRFFRRPLAWSLLALALLSAMTAV----SGFGLSKLYLVDAGWPL-EWIGRLGMAGGAVTVLLGCGGG  264 (390)
T ss_pred             ----chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHhhHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHH
Confidence                00001125567788776665554444333222    34446677788888887 77787777665 4667788999


Q ss_pred             HHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH-HhhcccccccceeecccCCc-cchhhHHH
Q 008615          417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG-CYQISFGPISWLMVSEIFPL-RTRGRGIS  494 (559)
Q Consensus       417 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~-~~~~~~~g  494 (559)
                      |++.||+++|+.+..+..+.++..+................+....+..+ +.+... +.......+..++ +.+++.++
T Consensus       265 g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~  343 (390)
T TIGR02718       265 AWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVT  343 (390)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHH
Confidence            99999999999888776655333222221110000111111112112211 122222 2223444444554 88999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          495 LAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       495 ~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      +.+....+|..++|.+.|.+.|..|+...|.+.+++.+++.++
T Consensus       344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888877776665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=4.5e-25  Score=209.76  Aligned_cols=350  Identities=14%  Similarity=0.137  Sum_probs=227.8

Q ss_pred             cccchhH-HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQ-LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~-~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +|+|..| .|.+.+++..+|+++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|... +
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A  134 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-A  134 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            9999999 9999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhh---hHHHHHHHHHHhhccCCchHHHHHh
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGL---SAPLALLMGIGMWSLPPSPRWLLLR  293 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~e~p~~~~~~  293 (559)
                      ...++..|+|+++|+++.++..++..+|.+++++++++ +... |||+.+.+   ......+.+++.+++|..++-+.-+
T Consensus       135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~  212 (511)
T TIGR00806       135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN  212 (511)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence            99999999999999999999999999999999999999 4455 89986544   3333344555567888666544333


Q ss_pred             hccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHh
Q 008615          294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI  373 (559)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (559)
                      +++..     +.+    ...+.....+.+........+    ......-..-...+++..+++.+....+...+.    .
T Consensus       213 ~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a----~  275 (511)
T TIGR00806       213 RLEDV-----RGA----LPCELDQMVPGPGGKLEDYLG----TCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFN----S  275 (511)
T ss_pred             ccccc-----ccc----cccccccCCCCCccccchhhh----hhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHH----h
Confidence            11100     000    000000000000000000000    000000001122345556666554443333232    2


Q ss_pred             hChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCc
Q 008615          374 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF  453 (559)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (559)
                      .+++-+..|...+.++...+....-|.+-++..+.+.+..+..|++-.++.+...+.++.+...-+.+++..   ...++
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m---~~t~~  352 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM---SQSHD  352 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh---hcccc
Confidence            334457777777777664432235566667777778888899998866554433333333322222222221   12356


Q ss_pred             hhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      .|...+..+++...+.+...... .-++.....+..|...|+++++..+-..+...+.
T Consensus       353 Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV  409 (511)
T TIGR00806       353 IWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTFVATALKTIITAVV  409 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence            66666777777777765544333 4455555667779999998887766665555443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=99.93  E-value=1.2e-23  Score=210.55  Aligned_cols=389  Identities=16%  Similarity=0.129  Sum_probs=243.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc------hhHhHHHHHHHHHHhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLGVLLVGRLLYGLGIG  211 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g  211 (559)
                      +|++..+++++.++. ..+++++++.|++.||+|||++++++.+++++++++++++      .+++.+++.|++.|+|.+
T Consensus        57 lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~  135 (591)
T PTZ00207         57 YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM  135 (591)
T ss_pred             hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            999999999999874 4556788899999999999999999999999999999997      689999999999999999


Q ss_pred             hhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHH-HHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hc--cCCch
Q 008615          212 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL-GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WS--LPPSP  287 (559)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~--~~e~p  287 (559)
                      ...+.....+.+|+| ++||+++|+...+.++|.++ +++..+++ . . +|++.|++.+++.++..++. ++  .|+.+
T Consensus       136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-~-~-~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~  211 (591)
T PTZ00207        136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF-S-D-NTSAYFFFLMSFALVVGILAIVFMRLPPFH  211 (591)
T ss_pred             HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-H-H-hHHHHHHHHHHHHHHHHHHHHhheeCCcch
Confidence            999999999999996 67999999999999999976 55555544 3 2 78988988888887765555 33  34444


Q ss_pred             HHHHHhhccCCCchhhhH------------------------------------------------HHH---H-HH-H--
Q 008615          288 RWLLLRAVQGKGSLQEYK------------------------------------------------EQA---I-SA-L--  312 (559)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~------------------------------------------------~~~---~-~~-~--  312 (559)
                      +|...++   +.+.+++.                                                ...   . .. +  
T Consensus       212 ~~~~~~~---~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll  288 (591)
T PTZ00207        212 LTGYQEK---HLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTV  288 (591)
T ss_pred             hhccccc---CCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            4432110   00000000                                                000   0 00 0  


Q ss_pred             ---------HhhcCCCCCCchhhHHH---H--HHHHHhhh-----c-c-ccccccccchhhcccCchhHHHHHHHHHHHH
Q 008615          313 ---------GKLRRRPPGDKLSERQI---E--DTLVSLKS-----S-Y-TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ  371 (559)
Q Consensus       313 ---------~~~~~~~~~~~~~~~~~---~--~~~~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (559)
                               +.++...++++.+.+..   +  ......+.     + + ..++...++++.+++..+|.+++.+++....
T Consensus       289 ~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~  368 (591)
T PTZ00207        289 IFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGA  368 (591)
T ss_pred             HHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCc
Confidence                     00000000000000000   0  00000000     0 0 0011112566777777777766554444333


Q ss_pred             HhhChhhHHHhHHHHHHHc-CCCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCcc--------h-hhhhHHHHHHHH
Q 008615          372 QITGQPSVLYYAGPILQSA-GFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRP--------L-LIGGVCGIALSL  440 (559)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--------~-~~~~~~~~~~~~  440 (559)
                      .    ..+...+.++.+.+ |.....+ ...+..+.++++.+|++..|.+.....+|+        . +.+..+ +.++.
T Consensus       369 g----l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~  443 (591)
T PTZ00207        369 H----FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITM  443 (591)
T ss_pred             h----heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHH
Confidence            3    34566677788888 6633122 223788889999999999998873222221        1 222222 33443


Q ss_pred             HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHH-HHhhHHHHHhc-
Q 008615          441 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV-TFAFSPLKELL-  518 (559)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~-~~i~g~l~~~~-  518 (559)
                      +++...     .....+.+..++.+.+++.. .++....+.|+|. ++-|+-.-+.....-+|+.+. ..++|.++|.- 
T Consensus       444 lll~~~-----~p~~~L~~~~~lvg~~~G~~-~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea  516 (591)
T PTZ00207        444 LTLFLT-----LPKAALPLPYFIAAFANGFM-AATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQA  516 (591)
T ss_pred             HHHHHH-----CCccHhHHHHHHHHHHhhHh-HHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433332     11123333444444444443 4455588999999 888988888888788887776 56788888752 


Q ss_pred             ---------C---chhhHHHHHHHHHHHHHHHHhhccCCC
Q 008615          519 ---------G---AENIFLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       519 ---------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                               |   +..+|++.+++++++.++...+.-++|
T Consensus       517 ~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        517 DKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             hhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence                     2   567899999999888887665544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.92  E-value=6.4e-23  Score=207.21  Aligned_cols=392  Identities=13%  Similarity=0.100  Sum_probs=223.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhch-hHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.++++|+++|+|.|...+
T Consensus        52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~  131 (500)
T PRK09584         52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA  131 (500)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence            89999999999988887777777899999999 5999999999999999999999874 566777889999999999999


Q ss_pred             hhhhhhhccCCccc--chhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHh
Q 008615          216 GAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR  293 (559)
Q Consensus       216 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~  293 (559)
                      ...+++.|++|+++  |..+++++..+.++|..+||.+++++.+.. |||+.|++.++..++..+..++..   +++..+
T Consensus       132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~---~~~~~~  207 (500)
T PRK09584        132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQ---RWVKQY  207 (500)
T ss_pred             CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhH---HHhccC
Confidence            99999999998643  456889999999999999999999998877 999999998765555443332211   111110


Q ss_pred             hccCCCchhhhHHHHHH--------HHHhhcCCCCCCchhhHH-HHHHHHHhhhccccccccccchhhcccCchhHHHHH
Q 008615          294 AVQGKGSLQEYKEQAIS--------ALGKLRRRPPGDKLSERQ-IEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG  364 (559)
Q Consensus       294 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (559)
                      +++++.+..+.......        ......-.++ +...... ..............    ....+.-+++......  
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--  280 (500)
T PRK09584        208 GSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EIARMALGVVALGIVVIFGKEA----FAMKGAARRKMIVAFI--  280 (500)
T ss_pred             CCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHH--
Confidence            00000000000000000        0000000000 0000000 00000000000000    0000111111111111  


Q ss_pred             HHHHHHHHhhChhhHHHhHHHHHHH-cC---CCCchhHHHHHHHHHHHHHHHHHHH----HHHhhhcCCcchhhhhHHHH
Q 008615          365 GGLVLFQQITGQPSVLYYAGPILQS-AG---FSAAADATRVSVVIGVFKLVMTWIA----VAKVDDLGRRPLLIGGVCGI  436 (559)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~~~~~~~~~~~~~~  436 (559)
                      .++....++..+.-...+...+..+ ..   .+-....+.+.....+..++..++.    +++.+|.+..+.+.+++++.
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~  360 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLC  360 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHH
Confidence            1111111111111111111111111 10   0111235556666666666666655    44455555556777888888


Q ss_pred             HHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 008615          437 ALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP  513 (559)
Q Consensus       437 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~  513 (559)
                      +++++.+.......+.   .+.+..+...++.+.......|....++.+..|++.||+++|+......+|..++..+.+.
T Consensus       361 ~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~  440 (500)
T PRK09584        361 SGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL  440 (500)
T ss_pred             HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777654321110   1122344445555566666777888889999999999999998877666666666655542


Q ss_pred             HH----------HhcCchhhHHHHHHHHHHHHHHHHh
Q 008615          514 LK----------ELLGAENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       514 l~----------~~~g~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      ..          ...++...|...++++++..++.+.
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        441 MAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             hccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            21          1113556777777666555544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.91  E-value=1.3e-21  Score=189.97  Aligned_cols=352  Identities=19%  Similarity=0.186  Sum_probs=246.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-hHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      .|.|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++..++....++++.+++..++..+......|.
T Consensus        32 ~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl  111 (400)
T PF03825_consen   32 RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPL  111 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHH
Confidence            7899999999999999999999999999999986 578888888888887777788889999999888889888888999


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHh-hhcccCCC--CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHh
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-GSFQINAV--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR  293 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l-~~~l~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~  293 (559)
                      ..++..+...  +++.-.|-.-...++|.+++... ++.+....  .+..+.+++.+..+++.....+.+|+.|.-   +
T Consensus       112 ~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~  186 (400)
T PF03825_consen  112 SDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---R  186 (400)
T ss_pred             HHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---c
Confidence            9998888875  34566677777777777777543 22222211  133456677776666666556677876620   0


Q ss_pred             hccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHh
Q 008615          294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI  373 (559)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (559)
                          +                                      .++..++....+..+++|+|++..+++..++......
T Consensus       187 ----~--------------------------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  187 ----S--------------------------------------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             ----c--------------------------------------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence                0                                      0000011111233578899887776665555544433


Q ss_pred             hChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCc
Q 008615          374 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF  453 (559)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (559)
                          ....|.+.++++.|..+....+....+..+..++.-...+++.+|+|.++++.++.+..++=..++....    ++
T Consensus       225 ----~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----~~  296 (400)
T PF03825_consen  225 ----AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS----DP  296 (400)
T ss_pred             ----HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence                4667778889998843325677777888888999999999999999999999999998888877776531    22


Q ss_pred             hhHHHHHHHH----HHHHhhcccccccceeecccCCccchhhHHHHHHHH-HHHHHHHHHHhhHHHHHhcCchhh-----
Q 008615          454 PLVAVSALLL----YVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAENI-----  523 (559)
Q Consensus       454 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~g~~~~-----  523 (559)
                      .+.......+    -+..++.. ......++.+..|++.|+++.++.+.. ..+|..++..+.|++.|+.|.+..     
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA  375 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence            2222222211    22223222 233447889999999999999998876 678999999999999999885543     


Q ss_pred             -HHHHHHHHHHHHHHHHhhccCC
Q 008615          524 -FLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       524 -~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                       +.+.+++.++..++.+++.||+
T Consensus       376 ~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCC
Confidence             3444444445555555555544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=1.4e-21  Score=191.91  Aligned_cols=368  Identities=16%  Similarity=0.171  Sum_probs=240.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhchHHHHHHH-HHHHHHHHHHHHhchhHh---------------
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELIIA-AVLYALGALTTAYAPGLG---------------  197 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~~~---------------  197 (559)
                      +|++..+.+++..+..+...+.+++.|.++|    |+||||.++++ .+...++.++.+++++++               
T Consensus        34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~  113 (477)
T TIGR01301        34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA  113 (477)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence            8999999999999999999999999999999    59999998774 666667777777776643               


Q ss_pred             --HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccc--hhhhhHHHHHHHHHHHHHHHhhhcc--cCCC------------
Q 008615          198 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQ--INAV------------  259 (559)
Q Consensus       198 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l--~~~~------------  259 (559)
                        .++++-.+..++.....+...+++.|.+|+++|  +.+.++.+...++|.++|+.+++..  .+..            
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~  193 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC  193 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence              223333444557788888899999999998865  5799999999999999999999864  1100            


Q ss_pred             CcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhh
Q 008615          260 GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS  338 (559)
Q Consensus       260 ~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (559)
                      .+.|+.|++.+++.++..++. +..+|.|...              .++..+  ++.++.+  +                
T Consensus       194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--------------~~~~~~--~~~~~~~--~----------------  239 (477)
T TIGR01301       194 ANLKSCFLIDIILLAILTYIALSAVKENPLIG--------------SDDFIN--SEAAPPS--K----------------  239 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--------------cccchh--hhccccc--c----------------
Confidence            156889999888877766655 5577754200              000000  0000000  0                


Q ss_pred             ccccccccccchhhc----ccC-chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH--cCCCCc-----hh----HHHHH
Q 008615          339 SYTDEKSEGSFLEVF----QGP-NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAA-----AD----ATRVS  402 (559)
Q Consensus       339 ~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~----~~~~~  402 (559)
                          ......+++++    +-| ..+.+.+..++.++..+    .+..|...+..+  ++.++.     ++    ..+..
T Consensus       240 ----~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f----~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l  311 (477)
T TIGR01301       240 ----HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWF----PFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGL  311 (477)
T ss_pred             ----cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHH
Confidence                00000112222    222 23344443344444333    344455555443  221110     01    23445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCC-cchhhhhHHHHHHHHHHHHHHHHhhcCc-h--------------hHHHHHHHHHHH
Q 008615          403 VVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGF-P--------------LVAVSALLLYVG  466 (559)
Q Consensus       403 ~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~  466 (559)
                      ....+...+.+++..++.+|+|+ |++..++.++.++++....+.....++. .              .......+...|
T Consensus       312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G  391 (477)
T TIGR01301       312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG  391 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence            55556666777888899999985 6777888888888777776543211100 0              122333333344


Q ss_pred             HhhcccccccceeecccCCc--cchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC--chhhHHHHHHHHHHHHHHHHhhc
Q 008615          467 CYQISFGPISWLMVSEIFPL--RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAVLFIVRTV  542 (559)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~  542 (559)
                      ........+.++++++..++  +..|..+|+.|.+..+...+.....|.+.+..|  ....+.+.++..++++++.++.+
T Consensus       392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence            44444556778888888884  556999999999999999999999999777776  44567777788888888888888


Q ss_pred             cCCCC
Q 008615          543 PETKG  547 (559)
Q Consensus       543 ~~~~~  547 (559)
                      |+++.
T Consensus       472 ~~~~~  476 (477)
T TIGR01301       472 PRPRV  476 (477)
T ss_pred             CCCCC
Confidence            87764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09669 putative symporter YagG; Provisional

Probab=99.89  E-value=1.3e-21  Score=196.55  Aligned_cols=326  Identities=14%  Similarity=0.041  Sum_probs=212.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hchH-HHHHHHHHHHHHHHHHHHhchh------HhHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY  206 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~  206 (559)
                      +|++..++|.+.++..+..++..|+.|.++||    +||| +.++.+.+..+++.+++...++      ++.+++..++.
T Consensus        40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~  119 (444)
T PRK09669         40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL  119 (444)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999998    7874 5566777777777766554432      45666667777


Q ss_pred             HhhhhhhhhhhhhhhhccC-CcccchhhhhHHHHHHHHHHHHHHHhhhcccCC------CCcchHHHhhhHHHHHHHHHH
Q 008615          207 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~------~~~wr~~f~~~~~~~~~~~~~  279 (559)
                      +.+.........++..|+. ++++|.+..++...+..+|..+++.+...+...      ..+|+..+.+.++++++..+.
T Consensus       120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            7777777777778899988 457899888888888888887776654332211      127888888888877766554


Q ss_pred             hhc-cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          280 MWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       280 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      .++ .+|.++                              ++ +                 .++.+....++.++||+.+
T Consensus       200 ~~~~~~e~~~------------------------------~~-~-----------------~~~~~~~~~~~~~~~n~~~  231 (444)
T PRK09669        200 CFFMTKERYT------------------------------PE-V-----------------DNSSSVWKDLKLLLGNSQW  231 (444)
T ss_pred             HhCCeEEecC------------------------------CC-C-----------------cCCCCHHHHHHHHhCCchH
Confidence            433 333210                              00 0                 0001112235677888887


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +...+..++.......    ......++.+. ........+.+.....+..+++.++.+++.||+|+|+.+..+.++.++
T Consensus       232 ~~l~~~~~~~~~~~~~----~~~~~~y~~~~-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        232 RIMFIFNVVLLTAVVT----RGGATLYYVNY-VLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             HHHHHHHHHHHHHHHH----Hhhhhheeeee-ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            7665544433332221    11122222222 222223444555566677888889999999999999998877665554


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      ..+.+...   ..++.+..+ ...+..+.......+..++++.|..+       .+..|...|+.+++..+|.++++.+.
T Consensus       307 ~~~~~~~~---~~~~~~~~~-~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~  382 (444)
T PRK09669        307 LSALIFFI---PPSNVWLIF-ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV  382 (444)
T ss_pred             HHHHHHHh---CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            33322221   122232223 33333344444455667788888764       33456778999999999999999999


Q ss_pred             HHHHHhcCc
Q 008615          512 SPLKELLGA  520 (559)
Q Consensus       512 g~l~~~~g~  520 (559)
                      |.+.+..|+
T Consensus       383 g~ll~~~Gy  391 (444)
T PRK09669        383 GWILAWVDY  391 (444)
T ss_pred             HHHHHHcCC
Confidence            999998876

>TIGR00788 fbt folate/biopterin transporter

Probab=99.89  E-value=1.5e-21  Score=195.56  Aligned_cols=377  Identities=13%  Similarity=0.004  Sum_probs=241.6

Q ss_pred             HhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----hHHHHHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYA  184 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~  184 (559)
                      .+..|.. ......++....++      +|++.++++...++..+...+-.+ +|+++||++     ||+.++++.++.+
T Consensus        35 y~~qGl~-~l~~~~~~~~l~~~------lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~  106 (468)
T TIGR00788        35 LFVKGIA-GLMRLPLSPMLTDD------LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS  106 (468)
T ss_pred             HHHhhHH-HHhhhhhhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH
Confidence            4555665 44444444444332      899999999999999999999666 999999998     7788888877763


Q ss_pred             -HHHHHHHhchhHhHHH-HHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHH---HHHHHHHHHHHHHhhhcccCCC
Q 008615          185 -LGALTTAYAPGLGVLL-VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLK---ELFIVLGILLGYFVGSFQINAV  259 (559)
Q Consensus       185 -i~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~g~~l~~~l~~~~  259 (559)
                       ++....+..++...+. +.+++.+++.+...++..+++.|..+ +++....+..   ....++|.++|+.+++.+.+..
T Consensus       107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~  185 (468)
T TIGR00788       107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT  185 (468)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             4434444445544444 48899999999999999999999998 5554443333   3344589999999999988877


Q ss_pred             CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhc
Q 008615          260 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS  339 (559)
Q Consensus       260 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (559)
                       +||..|++.+++.++..+..++++|++...       +.+  .+.++...          .... .....+   .    
T Consensus       186 -~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~-------~~~--~~~~~~~~----------~~~~-~~~~~~---~----  237 (468)
T TIGR00788       186 -LTRILFLITAALLLLQLFVSNLSKERRAFV-------RPR--IGTYLEMN----------MALL-TLGVLA---N----  237 (468)
T ss_pred             -CcchHHHHHHHHHHHHHHHHHhcccccccc-------ccc--ccccchhh----------hhhh-hhhHHH---H----
Confidence             999999999888887766667777753100       000  00000000          0000 000000   0    


Q ss_pred             cccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008615          340 YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK  419 (559)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  419 (559)
                        .++.....+..+++|..+..++..++.+. ...+.....++  ...+..|+++ ...|......+++.+++..+.+++
T Consensus       238 --~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~~~~~~f~--~~~~~lG~s~-~~~G~~~~~~~v~~i~g~~~~~~~  311 (468)
T TIGR00788       238 --VKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPGASGSVFC--ATTQCLPGGP-SFSGMSKVVGNLGSLCGVGGYDRF  311 (468)
T ss_pred             --HHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCCCCceeEE--EEcccCCCCc-chhhhHHHHHHHHHHHHHHHHHHH
Confidence              00001123444666655554433333111 11111111111  1113578887 889999999999999999999999


Q ss_pred             hhhcCCcchhhhhHHHHHHHHHHHHHHH-Hhh--c--CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHH
Q 008615          420 VDDLGRRPLLIGGVCGIALSLLLLSAYY-KIL--G--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS  494 (559)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  494 (559)
                      .+|++.|+++.++.++.+++.+...... ...  .  ...+.......+...+++....+. ..++.+..|++.+|+..+
T Consensus       312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~a  390 (468)
T TIGR00788       312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFA  390 (468)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHH
Confidence            9999999999888888777664432110 000  0  112222233333344444445555 478889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhcC-----chhhHHHHHHH
Q 008615          495 LAVLTNFGSNAIVTFAFSPLKELLG-----AENIFLLFAAI  530 (559)
Q Consensus       495 ~~~~~~~~g~~i~~~i~g~l~~~~g-----~~~~~~~~~~~  530 (559)
                      +.+.+.++|..+++.+.|.+.+..|     +...+.+..+.
T Consensus       391 l~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~  431 (468)
T TIGR00788       391 LLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGH  431 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence            9999999999999999999999888     65555544333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.7e-22  Score=173.49  Aligned_cols=382  Identities=16%  Similarity=0.134  Sum_probs=237.5

Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHH
Q 008615          100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELII  178 (559)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~  178 (559)
                      ++++++.|+..+-..+.....+     ..+.+...|  .+++.++..++.++|.+...+.++++|++.|| +|.|..-++
T Consensus        43 ~m~lv~mc~lgfgsyfcyd~p~-----alq~~fk~d--~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii  115 (459)
T KOG4686|consen   43 FMALVFMCLLGFGSYFCYDAPG-----ALQIDFKLD--SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII  115 (459)
T ss_pred             HHHHHHHHHhcccceeecCCch-----hhhhhhhcc--cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence            4445555555555544444433     333444444  88899999999999999999999999999995 788877776


Q ss_pred             HHHHHHHHHHHHHh---chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          179 AAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       179 ~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      -+....+|.+.++.   .+.+|.++++||+.|+|.-....+-..++.-||..|+.+.++|+.....-+|..+-..+.+++
T Consensus       116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            66666777777664   689999999999999998888888899999999999999999999999999988777776666


Q ss_pred             cCCCC----cc-hHHH---hhhHHHHHH-HHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhh
Q 008615          256 INAVG----GW-RYMY---GLSAPLALL-MGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE  326 (559)
Q Consensus       256 ~~~~~----~w-r~~f---~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (559)
                      .+...    |- +...   +..+..... ..+...-+    .|              .++.+++.+.+-.+.        
T Consensus       196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~--------------~D~rAerilh~e~g~--------  249 (459)
T KOG4686|consen  196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GL--------------SDDRAERILHLEEGF--------  249 (459)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hh--------------hhhHHHHHHhhhcCc--------
Confidence            54331    00 0000   000000000 00000000    00              011222222211111        


Q ss_pred             HHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhHHHHHHHH
Q 008615          327 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVI  405 (559)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  405 (559)
                                    ..+..+.+-..-++ |.+|.+.+.+.+.+...+    -+....|.++ +++|+++ ..++.+....
T Consensus       250 --------------~Ge~pkLtdv~~f~-ppfw~~~iicv~yyva~f----PFi~lg~~fF~~rfGlS~-~~a~~i~s~v  309 (459)
T KOG4686|consen  250 --------------LGEEPKLTDVNTFY-PPFWVLVIICVLYYVAWF----PFITLGPMFFQKRFGLSA-VSAGNILSTV  309 (459)
T ss_pred             --------------ccCCcccccccccC-ccHHHHHHHHHHHHHHHH----HHhhhhHHHHHHhhCCCh-hhccchhhhh
Confidence                          11111111112222 345555444444333332    2333445555 4578887 6677777777


Q ss_pred             HHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC
Q 008615          406 GVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP  485 (559)
Q Consensus       406 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  485 (559)
                      ...+.+.+.+.|.++||.|++-.++.+..+..+..=.+..+..   .+++.....+.+..-.....    .|..++.++|
T Consensus       310 y~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---lsPy~~m~~lGLsysllAcs----lWP~va~~vp  382 (459)
T KOG4686|consen  310 YGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---LSPYTSMTFLGLSYSLLACS----LWPCVASLVP  382 (459)
T ss_pred             hhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---ccHHHHHHHHhhhHHHHHHH----HhhhhhhhCC
Confidence            7778888899999999999998887765555444333333222   33444333333332222222    3455667789


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chh---hHHHHHHHHHHHHHHHHhh
Q 008615          486 LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AEN---IFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       486 ~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~---~~~~~~~~~~~~~~~~~~~  541 (559)
                      .++.|++.|+++.+.++|-++.|++.|.+.|..| +.+   .|+..+.+.+.+..+++.+
T Consensus       383 E~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  383 EEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            8999999999999999999999999999999876 332   2344444444444444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.87  E-value=1.6e-19  Score=178.20  Aligned_cols=383  Identities=13%  Similarity=0.080  Sum_probs=216.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhch-hHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++... +...++++..+.++|.|...+
T Consensus        40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~  119 (493)
T PRK15462         40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS  119 (493)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence            799999999999999999999999999999999 999999999999999988777543 223344455556667777778


Q ss_pred             hhhhhhhccCCcc--cchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHh
Q 008615          216 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR  293 (559)
Q Consensus       216 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~  293 (559)
                      ...+++.|.+|++  +|..++++...+.++|..++|.+.+++.+.. |||+.|.+.++..++..+..++..+.   +...
T Consensus       120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~---l~~~  195 (493)
T PRK15462        120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRH---FTHT  195 (493)
T ss_pred             cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhh---hccC
Confidence            8889999999875  6999999999999999999999999998877 99999998766444433333322111   0000


Q ss_pred             -hccCCCchhhhHHHHHH------HHH----hhcCCCCCCchhhHHHH-HHHHH---hhhccccccccccchhhcccCch
Q 008615          294 -AVQGKGSLQEYKEQAIS------ALG----KLRRRPPGDKLSERQIE-DTLVS---LKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       294 -~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                       ..+++.. +++ +....      ...    .+....-.+........ .....   .-.....+.++   .+  |+ +.
T Consensus       196 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~e--r~-r~  267 (493)
T PRK15462        196 RGVNKKVL-RAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQ---KQ--RK-EL  267 (493)
T ss_pred             CCCCCCCc-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HH--Hh-hH
Confidence             0000100 000 00000      000    00000000000000000 00000   00000000000   00  11 11


Q ss_pred             h---HHHHHHHHHHHHHhhChhhHHHhHHHHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--cc----
Q 008615          359 K---AFIIGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR--RP----  427 (559)
Q Consensus       359 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~----  427 (559)
                      .   .+.+...+.+..+.-....+..|.....+.  .|+.  ....++..+..+..++.+++..++-.|..+  |.    
T Consensus       268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~--ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~  345 (493)
T PRK15462        268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT--VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW  345 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee--eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence            1   111111111221111112222222221111  1222  346677777777777777777766555522  21    


Q ss_pred             -hhhhhHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHH-HH
Q 008615          428 -LLIGGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN-FG  502 (559)
Q Consensus       428 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~  502 (559)
                       -..+++++.+++++.+.+.....+.   .+...++...++......+..|+..+.++++.|++.+|..+|+..... .+
T Consensus       346 ~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~  425 (493)
T PRK15462        346 GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI  425 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence             2566777788887777543322211   233334555555666777888999999999999999999999986533 45


Q ss_pred             HHHHHHHhhHHHHHh------------cCchhhHHHHHHHHHHH
Q 008615          503 SNAIVTFAFSPLKEL------------LGAENIFLLFAAIAFLA  534 (559)
Q Consensus       503 g~~i~~~i~g~l~~~------------~g~~~~~~~~~~~~~~~  534 (559)
                      |..++..+.+.....            ..+...|...+.+.++.
T Consensus       426 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        426 ANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            555555554433210            12334566666655555

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.86  E-value=5.4e-20  Score=185.85  Aligned_cols=334  Identities=13%  Similarity=0.035  Sum_probs=212.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhch-HHHHHHHHHHHHHHHHHHHhch------hHhHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGR-KRELIIAAVLYALGALTTAYAP------GLGVLLVGRLLY  206 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~------~~~~l~~~r~l~  206 (559)
                      +|++..++|.+..+..+.-++..|++|.++|    |+|| |+.++++.+..+++.+++-..+      .+..+++..++.
T Consensus        37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~  116 (473)
T PRK10429         37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW  116 (473)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999    6698 5667778888777766664433      134556666777


Q ss_pred             HhhhhhhhhhhhhhhhccC-CcccchhhhhHHHHHHHHHHHHHHHhhhccc------CCCCcchHHHhhhHHHHHHHHHH
Q 008615          207 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQI------NAVGGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~------~~~~~wr~~f~~~~~~~~~~~~~  279 (559)
                      +++.....+...+++.|.. ++++|.+..++...+.++|..+.+.+...+.      +...+|+...++.+++.++..+.
T Consensus       117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~  196 (473)
T PRK10429        117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII  196 (473)
T ss_pred             HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888889999998 5789999999877777777665554443221      11115777777777766665444


Q ss_pred             hh-ccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          280 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       280 ~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      .+ ..+|.+..             .  +          ...                  ++.++.+-+..++.+++|+.+
T Consensus       197 ~~~~~~e~~~~-------------~--~----------~~~------------------~~~~~~~~~~~~~~~~~n~~~  233 (473)
T PRK10429        197 TLRNVHEVYSS-------------D--N----------QVS------------------AEGSHLTLKDIVALIYKNDQL  233 (473)
T ss_pred             HHcCceecCCc-------------c--c----------ccc------------------ccccCCCHHHHHHHHhcCHHH
Confidence            43 35543210             0  0          000                  000000111223445677665


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +.+++..++......    ....+.+++.+...... ...+.+.....++.+++.++.+++.||+|+|+.+..+..+..+
T Consensus       234 ~~ll~~~~~~~~~~~----~~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        234 SCLLGMALAYNIASN----IINGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHH----HHhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            555444333333221    23333344444333333 4556666667788899999999999999999999887776665


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      +.+.+.........+.+..+ ...+..++......+..+++.+|..+       .+..|...|...++..++..+++.+.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~  387 (473)
T PRK10429        309 SCGVLLLMGLAAPHNALLIV-IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI  387 (473)
T ss_pred             HHHHHHHHhccCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            55444322111112222222 22222333333334455677778754       44456688999999999999999999


Q ss_pred             HHHHHhcCc
Q 008615          512 SPLKELLGA  520 (559)
Q Consensus       512 g~l~~~~g~  520 (559)
                      |.+.+..|+
T Consensus       388 g~~l~~~Gy  396 (473)
T PRK10429        388 GVVLGLIGY  396 (473)
T ss_pred             HHHHHHcCC
Confidence            999988776

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.86  E-value=1.6e-19  Score=167.96  Aligned_cols=393  Identities=16%  Similarity=0.114  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH
Q 008615           99 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII  178 (559)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~  178 (559)
                      +|++++..++..+..++.-..+++..-....       +++ +....-|+.-+|++.+....+++-|+.|++|-|...++
T Consensus        43 RW~vLl~~slL~~SN~~qWI~ya~i~n~~~~-------~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   43 RWVVLLAFSLLNFSNGMQWIQYAPINNYVNS-------FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             HhHHHHHHHHHHhcCcchheeehhHHHHHHH-------Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            3444455555556555544333333222221       167 77788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhch------hHh--HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHH
Q 008615          179 AAVLYALGALTTAYAP------GLG--VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF  250 (559)
Q Consensus       179 ~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  250 (559)
                      +.++.++|..+-..+.      .++  ....+..+.+.++-........+..-||++++|..+..+-.++..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999999877652      345  66778888888888777777788899999999999999999999999999999


Q ss_pred             hhhcccCCC-----CcchH--HHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCC
Q 008615          251 VGSFQINAV-----GGWRY--MYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD  322 (559)
Q Consensus       251 l~~~l~~~~-----~~wr~--~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (559)
                      +...+..+.     ..|..  .|+....++.+.+++. +..++.|+.-.            ....+              
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp------------s~s~~--------------  248 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP------------SASQA--------------  248 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC------------chhHh--------------
Confidence            998887653     14654  3554444444433333 33333221000            00000              


Q ss_pred             chhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHH
Q 008615          323 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS  402 (559)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (559)
                                      ...+..-..+.++.++++++....+++.+......    .....+...+...|+.. ..+|+..
T Consensus       249 ----------------~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~----~l~~~l~~~l~~sgY~~-~~aG~ig  307 (480)
T KOG2563|consen  249 ----------------ALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFN----SLSTLLNLALCPSGYEG-VFAGYIG  307 (480)
T ss_pred             ----------------hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHH----HHHHHhhhccccccCCc-cccchhH
Confidence                            00001123356788899888777766665554433    23333333334456665 6899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCcchh-hhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeec
Q 008615          403 VVIGVFKLVMTWIAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS  481 (559)
Q Consensus       403 ~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (559)
                      ....++++++.++.|.+.||.+.-+.. ++......++...+..+.. . ....+.+...+...+.+..+..|+..-+..
T Consensus       308 ~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~-~-~~~~viv~~t~~~~g~~~~~~~Pig~Elgv  385 (480)
T KOG2563|consen  308 ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL-F-LGDSVIVFTTCGLLGFFGTGYLPIGFELGV  385 (480)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-c-CCceEehhhhHHHHHHhhcCCCCcceeeee
Confidence            999999999999999999998875543 3333333333222222221 1 222233444455566667778888888888


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC----chhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615          482 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----AENIFLLFAAIAFLAVLFIVRTVPETKGL  548 (559)
Q Consensus       482 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (559)
                      |..-|..-++..|+.+..+++.+.+-..+.+...+..+    +...-+.....+++..++..++.++.+++
T Consensus       386 E~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  386 ETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             eeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            88666778899999999999999999999999988777    44444455555555555555555544443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.86  E-value=1.4e-19  Score=180.77  Aligned_cols=329  Identities=19%  Similarity=0.217  Sum_probs=240.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhchHHH-HHHHHHHHHHHHHHHHhc-h-------hHhHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRE-LIIAAVLYALGALTTAYA-P-------GLGVLLVGRL  204 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~i~~~~~~~~-~-------~~~~l~~~r~  204 (559)
                      +|+++..+|.+..+..+..++..|+.|.++|    |+||||. +++|.+..+++.+++... +       .+..+.+..+
T Consensus        32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~  111 (428)
T PF13347_consen   32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI  111 (428)
T ss_pred             cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence            7999999999999999999999999999999    8997765 457888888888877765 4       2334567777


Q ss_pred             HHHhhhhhhhhhhhhhhhccCC-cccchhhhhHHHHHHHHHHHHHHHhhhcccCCCC------cchHHHhhhHHHHHHHH
Q 008615          205 LYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVG------GWRYMYGLSAPLALLMG  277 (559)
Q Consensus       205 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~------~wr~~f~~~~~~~~~~~  277 (559)
                      +..++.........++..|..+ +++|.+..++-..+..+|.++...+.+.+.+..+      +|++..++.+++.++..
T Consensus       112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~  191 (428)
T PF13347_consen  112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF  191 (428)
T ss_pred             HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence            7799999999999999999997 4789999999999999998777776666554322      69999999888888766


Q ss_pred             HHhh-ccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC
Q 008615          278 IGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP  356 (559)
Q Consensus       278 ~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (559)
                      ++.. ..+|.++                                              +.+++.++.+-+..++.+++||
T Consensus       192 ~i~~~~~ke~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~nr  225 (428)
T PF13347_consen  192 LITFFFVKERSV----------------------------------------------EVTEQEKKISLRDSLRSLFRNR  225 (428)
T ss_pred             hhhhheeeeccc----------------------------------------------cccccccccccccchhhhcccc
Confidence            6654 4555111                                              0000011222344577888888


Q ss_pred             chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHH
Q 008615          357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI  436 (559)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  436 (559)
                      .++.......+..+....    .....+++.+..-..+ ...+.......+..+++.++.++++||+|+|+.+..+.++.
T Consensus       226 ~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~  300 (428)
T PF13347_consen  226 PFRILLLAFFLQWLAFAL----MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLA  300 (428)
T ss_pred             hHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHH
Confidence            877776665555444433    3334444444433333 46677777888999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHH
Q 008615          437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTF  509 (559)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~  509 (559)
                      +++.+++.+...   .+.+..+ ...+..+..........+++..|+.+       ++..|...|+.++...++..+++.
T Consensus       301 ~~~~~~~~~~~~---~~~~~~~-i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~  376 (428)
T PF13347_consen  301 ALGFLLLFFLGP---GSPWLVL-ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA  376 (428)
T ss_pred             HHHHHHHHHHHh---hhHHHHH-HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence            888877765431   2333333 34444444444555677788888876       344689999999999999999999


Q ss_pred             hhHHHHHhcCch
Q 008615          510 AFSPLKELLGAE  521 (559)
Q Consensus       510 i~g~l~~~~g~~  521 (559)
                      +.+.+.+..|+.
T Consensus       377 i~g~~l~~~Gy~  388 (428)
T PF13347_consen  377 IVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHhCcC
Confidence            999998877654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.86  E-value=2.2e-18  Score=170.71  Aligned_cols=361  Identities=17%  Similarity=0.165  Sum_probs=242.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH-HHHHHHHHHHHHHhc-h-hHhHHHHHHHHHHhhhhhhhhhhh
Q 008615          142 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYALGALTTAYA-P-GLGVLLVGRLLYGLGIGLAMHGAP  218 (559)
Q Consensus       142 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~  218 (559)
                      .+..++..++..+..++..|+.|.++|+-|+||.++. ..++..++++++.+. + +++...+.-++.-++.+.......
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557889999999999999999999999987766554 445555566666663 3 455555556666678888888899


Q ss_pred             hhhhccCCcccc--------------------------hhhhhHHHHHHHHHHHHHHHhhhcccCCCC-------cchHH
Q 008615          219 LYIAETCPSQIR--------------------------GTLISLKELFIVLGILLGYFVGSFQINAVG-------GWRYM  265 (559)
Q Consensus       219 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-------~wr~~  265 (559)
                      +++.|..+++++                          ++..+.-.+...+|.++.-++.-.+.....       +-|..
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~  228 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA  228 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            999999999888                          899998888888888887776555432221       34888


Q ss_pred             HhhhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615          266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK  344 (559)
Q Consensus       266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (559)
                      +.+.++.-++..+ ..+++||.|+.        +.. +......+...++                              
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~~--------~~~-~~~~~~~~~g~~~------------------------------  269 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPGP--------RPL-PSGSSYLRFGFKR------------------------------  269 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCC--------CCC-CcchhHHHHHHHH------------------------------
Confidence            8888877666444 44667776530        000 0000000011111                              


Q ss_pred             ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                      -...++++.|.|...++++.    ++.+.-+.+.+......+.. .++++. .+...+.....+.+++|.++.|++.||+
T Consensus       270 l~~t~k~~~~~~~~~~fLia----~~l~~dg~~ti~~~~~i~a~~~lg~s~-~~l~~~~l~~~i~a~~Ga~~~g~l~~r~  344 (477)
T PF11700_consen  270 LWRTFKEIRKLRQLFLFLIA----YFLYSDGVNTIISFAGIYATEVLGMST-TQLIVFGLVVQIVAIIGALLFGWLQDRF  344 (477)
T ss_pred             HHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            01123344444444444433    33333444556666666665 578887 7788888889999999999999999999


Q ss_pred             CCc--chhhhhHHHHHHHHHHHHH--HHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHH
Q 008615          424 GRR--PLLIGGVCGIALSLLLLSA--YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT  499 (559)
Q Consensus       424 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~  499 (559)
                      |.|  +++..+.++..+..+...+  ............+..+.+..+.+.+...+...++.+++.|+++.+..+|+....
T Consensus       345 g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~  424 (477)
T PF11700_consen  345 GPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAIT  424 (477)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            999  7766665554332222111  110001122233444555666666677788889999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHHHHHhhccCCCC
Q 008615          500 NFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKG  547 (559)
Q Consensus       500 ~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (559)
                      +...+.+||.++|.+.+..| .+..+....++.+++.++. ..++..|+
T Consensus       425 gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g  472 (477)
T PF11700_consen  425 GKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG  472 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence            99999999999999999998 6777777777777777655 44444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.86  E-value=5.1e-21  Score=181.76  Aligned_cols=354  Identities=16%  Similarity=0.150  Sum_probs=224.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH--HHHH-HHHHhch----hHh-HHHHHHHHHHhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY--ALGA-LTTAYAP----GLG-VLLVGRLLYGLG  209 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~i~~-~~~~~~~----~~~-~l~~~r~l~G~~  209 (559)
                      .|++.+++|.+.++..+...+.+++.|.++||+|.||-++....+.  ..+. +...+.+    |++ ..+++-+..|++
T Consensus        38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~  117 (412)
T PF01306_consen   38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV  117 (412)
T ss_dssp             H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999666544332222  2222 2222222    222 223333344444


Q ss_pred             hhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc-CCchH
Q 008615          210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPR  288 (559)
Q Consensus       210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~  288 (559)
                      .....|+.-+++.++.  ++.+.-.|-.-.+.++|.+++..++|.+.+.  +-+..||+....+++..++.++. |+.++
T Consensus       118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~  193 (412)
T PF01306_consen  118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPP  193 (412)
T ss_dssp             TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred             HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence            4455555555555543  4456677888889999999999999998764  56778888777666655554443 33221


Q ss_pred             HHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHH
Q 008615          289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV  368 (559)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (559)
                      ....+                          +..               ..++++.+.+...+++|+|++|.+++.....
T Consensus       194 ~~~~~--------------------------~~~---------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~  232 (412)
T PF01306_consen  194 QAEVA--------------------------DAL---------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV  232 (412)
T ss_dssp             SS-SS--------------------------TTS---------------SS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             hhhhh--------------------------ccc---------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence            00000                          000               0000011112345788888888766544443


Q ss_pred             HHHHhhChhhHHHhHHHHHHH----cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHH
Q 008615          369 LFQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS  444 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  444 (559)
                      ...+..    +-...+.|+..    .+.+. ...|++.+...+..++.-.+.+++.+|+|.|+.++++..++.+=..+.+
T Consensus       233 ~~~Y~v----fdqqf~~y~~~~f~~~~~g~-~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~  307 (412)
T PF01306_consen  233 AAIYDV----FDQQFPIYFASFFQSAGQGN-QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG  307 (412)
T ss_dssp             HHHHHH----HHHHHHHHHHHTSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHHHHHHHHHHHhcccccCh-hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence            333322    22223334433    22333 4678888888889999999999999999999999999988888877776


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHH-HHHHHHHHHHHHHhhHHHHHhcCchhh
Q 008615          445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENI  523 (559)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~  523 (559)
                      +.     ++++.....-.+-..-+.....+ ..-|+.+.+|++..++...+. +...+++.++.+.+.|.++|+.|++.+
T Consensus       308 ~~-----~~~~~i~~~klLH~~e~~l~lva-~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~t  381 (412)
T PF01306_consen  308 FA-----TNPWVISLIKLLHALEFPLLLVA-AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHT  381 (412)
T ss_dssp             T-------SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hh-----cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHH
Confidence            42     34444443333333333333333 347889999999999999886 567899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCC
Q 008615          524 FLLFAAIAFLAVLFIVRTVPETKG  547 (559)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~  547 (559)
                      |++.+.+.++..++..+.+++.++
T Consensus       382 ylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  382 YLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHHHHHheeeecCCCc
Confidence            999999888888888877766554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.84  E-value=3.2e-19  Score=168.76  Aligned_cols=277  Identities=17%  Similarity=0.116  Sum_probs=191.0

Q ss_pred             HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC-----------
Q 008615          191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----------  259 (559)
Q Consensus       191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----------  259 (559)
                      +...+|+.++++-++.|.|.+...+....++.+..+++++.+.+++.++++++|.+++|.+++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            345789999999999999999999999999999999999999999999999999999999999877321           


Q ss_pred             ----CcchHHHhhhHHHHHHHHHHhhc--cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Q 008615          260 ----GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL  333 (559)
Q Consensus       260 ----~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (559)
                          .+|+++|++.+.+.++..+.+.+  +||...             +++ ++                          
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-------------~~~-~~--------------------------  124 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-------------ADV-AR--------------------------  124 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-------------ccc-cc--------------------------
Confidence                27999999777666655554433  344211             000 00                          


Q ss_pred             HHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH---cCCCCchhHHHHHHHHHHHHH
Q 008615          334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKL  410 (559)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  410 (559)
                             ..+++....++.+++|.++...    +..+.+......+..|.+.|+.+   .+.++ .+++........+.+
T Consensus       125 -------~~~~~~~~~~~~~~~~~~~l~~----~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~-~~a~~~~s~~~~~~~  192 (310)
T TIGR01272       125 -------VSSGDTTQKTSAFQFTHLVLGA----LGIFVYVGAEVSAGSFLVNFLSDPHALGLPE-DQAAHFTAYTWGGAM  192 (310)
T ss_pred             -------cccccccchhhHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHH
Confidence                   0000000112344444433322    33333443445678888999875   36665 788899999999999


Q ss_pred             HHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchh
Q 008615          411 VMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG  490 (559)
Q Consensus       411 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  490 (559)
                      +|+++.+++.||+++++.+..+..+..++.+++...     . .......+. ..+++.....|...+...+..|+ ..+
T Consensus       193 iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~-~~~~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~-~~~  264 (310)
T TIGR01272       193 VGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----H-GYVAMWFVL-ALGLFNSIMFPTIFSLALNALGR-HTS  264 (310)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----C-CHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh-hhh
Confidence            999999999999999998887776666655433321     1 122222222 33344444455655677777674 456


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHH
Q 008615          491 RGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA  528 (559)
Q Consensus       491 ~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~  528 (559)
                      ++.++. ....+|+++.|.+.|.+.|..|.+..+++..
T Consensus       265 ~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       265 QGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             hhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            677775 5678999999999999999999877776433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.84  E-value=1.4e-18  Score=174.87  Aligned_cols=325  Identities=14%  Similarity=0.020  Sum_probs=196.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh----chHHHH-HHHHHHHHHHHHHH-Hh----ch--hHhHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL----GRKREL-IIAAVLYALGALTT-AY----AP--GLGVLLVGRLL  205 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~-~~----~~--~~~~l~~~r~l  205 (559)
                      +|++..++|.+.+...+..++..+++|+++||.    ||||.+ +++.+...+..++. ..    +.  ..+.+++..++
T Consensus        39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (448)
T PRK09848         39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG  118 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence            799999999999999999999999999999996    777654 55655555444443 22    11  22334445567


Q ss_pred             HHhhhhhhhhhhhhhhhccCCc-ccchhhhhHHHHH-----HHHHHHHHHHhhhcccCCC-CcchHHHhhhHHHHHHHHH
Q 008615          206 YGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKELF-----IVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       206 ~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~  278 (559)
                      .+++.+...+...++..+...+ ++|.+..++-..+     ..++..++|.+++...... .+|.....+.++++++..+
T Consensus       119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~  198 (448)
T PRK09848        119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF  198 (448)
T ss_pred             HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            7888888887777777766644 6788776665543     3355566666665432111 0222222222333333222


Q ss_pred             Hh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCc
Q 008615          279 GM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN  357 (559)
Q Consensus       279 ~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (559)
                      +. ...+|++.                            .+                     .++...+..++.++|++.
T Consensus       199 ~~~~~~~e~~~----------------------------~~---------------------~~~~~~~~~~~~l~~n~~  229 (448)
T PRK09848        199 ICFKSTRENVV----------------------------RI---------------------VAQPSLKISLQTLKRNRP  229 (448)
T ss_pred             HHHcCcEeccC----------------------------CC---------------------ccCCCHHHHHHHHhCCch
Confidence            22 23344321                            00                     000011123566888888


Q ss_pred             hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHH
Q 008615          358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI  436 (559)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  436 (559)
                      ++...+..++.+....    ....+.++++++ .+.+. ...++......++.+++.++.+++.||+++|+.+.++.++.
T Consensus       230 f~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~  304 (448)
T PRK09848        230 LFMLCIGALCVLISTF----AVSASSLFYVRYVLNDTG-LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG  304 (448)
T ss_pred             HHHHHHHHHHHHHHHH----HHhhhheeeEeeecCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            7766655554444332    233345555554 33332 44444444445677889999999999999999999988877


Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCcc-------chhhHHHHHHHHHHHHHHHHHH
Q 008615          437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR-------TRGRGISLAVLTNFGSNAIVTF  509 (559)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~  509 (559)
                      .++.+.+.+.   ...+.+..+. ..+..+.......+...++..|..|.+       ..|...|+.++...+|..+++.
T Consensus       305 ~i~~~~~~~~---~~~~~~~~~~-~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        305 TCGYLLFFWV---SVWSLPVALV-ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             HHHHHHHHHc---CchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence            7776655431   1122222222 222233333333445556777776543       4699999999999999999999


Q ss_pred             hhHHHHHhcCc
Q 008615          510 AFSPLKELLGA  520 (559)
Q Consensus       510 i~g~l~~~~g~  520 (559)
                      +.+.+.+..|+
T Consensus       381 i~g~~l~~~G~  391 (448)
T PRK09848        381 IPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHcCC
Confidence            99999887775

>PRK11462 putative transporter; Provisional

Probab=99.84  E-value=2.4e-18  Score=172.50  Aligned_cols=325  Identities=13%  Similarity=0.048  Sum_probs=204.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hchHHH-HHHHHHHHHHHHHHHHhchh------HhHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRKRE-LIIAAVLYALGALTTAYAPG------LGVLLVGRLLY  206 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~  206 (559)
                      +|+++..+|.+..+.-+--++..|+.|.++||    +||||. ++++.+..+++.+++-..++      +..+++.-++.
T Consensus        40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~  119 (460)
T PRK11462         40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL  119 (460)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999995    798654 55677777777766654442      34556666777


Q ss_pred             HhhhhhhhhhhhhhhhccCC-cccchhhhhHHHHHHHHHHHHHHHhhhcccCCC------CcchHHHhhhHHHHHHHHHH
Q 008615          207 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------~~wr~~f~~~~~~~~~~~~~  279 (559)
                      .++.......-.++..|..+ +++|.+..++...+..+|..+++.+...+....      .+|+....+.+++.+++.++
T Consensus       120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888888889999887 688999999999999999888777654433221      16787777777766665544


Q ss_pred             hhc-cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          280 MWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       280 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      .++ .+|.++                            .  +.                   ++...+..++..++|+.+
T Consensus       200 ~~~~~kE~~~----------------------------~--~~-------------------~~~~~~~~l~~~~~Nk~~  230 (460)
T PRK11462        200 CFFTTKERVE----------------------------A--PP-------------------TTTSMREDLRDIWQNDQW  230 (460)
T ss_pred             HHhcceeccC----------------------------C--Cc-------------------cCCCHHHHHHHHhCChHH
Confidence            433 333211                            0  00                   000011234566777766


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +.+.....+.............+|..++    .... ...+.+.....++.+++.+++++++||+++|+....+..+..+
T Consensus       231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~----~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~  305 (460)
T PRK11462        231 RIVGLLTIFNILAVCVRGGAMMYYVTWI----LGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV  305 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhhhh----cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            6554433333332222111222222222    2222 3445566777788899999999999999999887655444333


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      ..+++.+.   ........+...++ .++......++.+++..|..+       .+..|...+...+...+|.++++.+.
T Consensus       306 ~~~~~~~~---~~~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~  381 (460)
T PRK11462        306 ISLAMFFV---PMQASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI  381 (460)
T ss_pred             HHHHHHHh---chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322211   11222222222222 233333334444566666654       33345556777788999999999999


Q ss_pred             HHHHHhcCc
Q 008615          512 SPLKELLGA  520 (559)
Q Consensus       512 g~l~~~~g~  520 (559)
                      |.+.+..|+
T Consensus       382 g~iL~~~Gy  390 (460)
T PRK11462        382 GWMLAYGGY  390 (460)
T ss_pred             HHHHHHcCC
Confidence            999987665

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.82  E-value=8.7e-18  Score=161.27  Aligned_cols=330  Identities=20%  Similarity=0.145  Sum_probs=230.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hchH-HHHHHHHHHHHHHHHHHHhchh------HhHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY  206 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~  206 (559)
                      +|+++..+|.+..+--+--++..|+.|.+.||    +||+ +.++.+.+-.++.+.++-.+++      ....++.-++.
T Consensus        43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~  122 (467)
T COG2211          43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL  122 (467)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence            89999999999999999999999999999994    8875 5567788888888888877763      44566678889


Q ss_pred             HhhhhhhhhhhhhhhhccCC-cccchhhhhHHHHHHHHHHHHHHHhhhcccC----C--CCcchHHHhhhHHHHHHHHHH
Q 008615          207 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQIN----A--VGGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----~--~~~wr~~f~~~~~~~~~~~~~  279 (559)
                      +++.......-.++..++.+ ++||.+..++-+.+.++|..+...+...+..    .  ..||+..-++.++++.+..+.
T Consensus       123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~  202 (467)
T COG2211         123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF  202 (467)
T ss_pred             HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            99999888888888888885 4889999999999999997665555444332    1  227888888877777776665


Q ss_pred             hhc-cCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          280 MWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       280 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      .++ ..|.+.                            +..+.+                ...+.+.+..+..+++|+.+
T Consensus       203 ~~~~v~ER~~----------------------------~~~~~~----------------~~~~~~~~~~~~~~~~Nrp~  238 (467)
T COG2211         203 CFFNVKERVV----------------------------ETQPTK----------------TGVKLKLKDSFLLIFKNRPL  238 (467)
T ss_pred             HHHHhhcccC----------------------------ccccCc----------------ccccccHHHHHHHHHccchH
Confidence            544 433221                            000000                00011112234467788877


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA  437 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  437 (559)
                      ....+...+.+....    .......+|.+. .+..+ ............+.+++.++..++.+|+|+|+++.++.++.+
T Consensus       239 ~~~l~~~l~~~~~~~----i~~s~~~yy~~y~lg~~~-l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         239 LLLLLMNLLLFIAFN----IRGSIMVYYVTYVLGDPE-LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             HHHHHHHHHHHHHHH----HHhhhhheeEEEEcCChH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            766654333333322    222222333322 23333 556667777777778889999999999999999999998888


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCC-------ccchhhHHHHHHHHHHHHHHHHHHh
Q 008615          438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFA  510 (559)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~i  510 (559)
                      ++.+++.+..    .+....+++..+..+.......++.+++.+|...       .+..|...|...+++.+|.+++..+
T Consensus       314 i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         314 VGYLLLYFTP----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHhhc----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            8888777542    2333333344344444445566788888888754       3456888899999999999999999


Q ss_pred             hHHHHHhcCc
Q 008615          511 FSPLKELLGA  520 (559)
Q Consensus       511 ~g~l~~~~g~  520 (559)
                      .|++.+..|+
T Consensus       390 ~g~~L~~~Gy  399 (467)
T COG2211         390 PGWILGAIGY  399 (467)
T ss_pred             HHHHHHHcCC
Confidence            9999988774

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.79  E-value=2.8e-17  Score=156.12  Aligned_cols=401  Identities=15%  Similarity=0.129  Sum_probs=253.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhch--hHhHHHHHHHHHHhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAM  214 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~  214 (559)
                      +|++++++.-+.+.|..-.-+..+++|+++||+ |+|+.+++|.++..+|.++.+.+.  +...++++-++.++|.|..-
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            679999999999999988889999999999996 999999999999999999999984  78899999999999999999


Q ss_pred             hhhhhhhhccCCcc--cchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHH
Q 008615          215 HGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL  292 (559)
Q Consensus       215 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~  292 (559)
                      +....++.|.+|++  +|-..++++.++.++|.+++|++.+++.+.+ ||...|.+.++-..+.++..++.+..-.+...
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~  214 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG  214 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence            99999999999864  3778899999999999999999999999988 99999999888877776666554321110000


Q ss_pred             hhccCCCchhhhHH-H----HHHHHHhh-cCCCCCCchhhH-HHHHHHHH---hhhccccccccccchhhcccCchhHHH
Q 008615          293 RAVQGKGSLQEYKE-Q----AISALGKL-RRRPPGDKLSER-QIEDTLVS---LKSSYTDEKSEGSFLEVFQGPNLKAFI  362 (559)
Q Consensus       293 ~~~~~~~~~~~~~~-~----~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (559)
                      + .+++....+... .    ........ -.....+..... ........   ..+....++....-++++   ...++.
T Consensus       215 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~---~~~~Lf  290 (498)
T COG3104         215 V-PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLL---AAIPLF  290 (498)
T ss_pred             C-CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH---HHHHHH
Confidence            0 000000000000 0    00001110 000000000000 00000000   000000000000000010   112233


Q ss_pred             HHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--c-----hhhhhHHH
Q 008615          363 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--P-----LLIGGVCG  435 (559)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~-----~~~~~~~~  435 (559)
                      +...+.+..+--..+.+..|.....++..+.-.....+..++..+.-++.+++..++..+.+++  .     -+-+++.+
T Consensus       291 l~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l  370 (498)
T COG3104         291 LFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLIL  370 (498)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHH
Confidence            3333444444444445555554444333121224567777888888888887777777774333  1     23456666


Q ss_pred             HHHHHHHHHHHHHhhc----CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          436 IALSLLLLSAYYKILG----GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       436 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      ++.+++++........    ..+...++...++..+.-.+..|+..+++..+.|+...+..+++.......+..++..+.
T Consensus       371 ~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va  450 (498)
T COG3104         371 AGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVA  450 (498)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceec
Confidence            6666666665422122    234445555566666777778888889999999999999999999888888888888777


Q ss_pred             HH------HHHhcCchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          512 SP------LKELLGAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       512 g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      +.      ..+.......|..++...++...+.+...|
T Consensus       451 ~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~  488 (498)
T COG3104         451 GLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP  488 (498)
T ss_pred             ccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence            63      344445566777777777666665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=3e-16  Score=145.76  Aligned_cols=352  Identities=17%  Similarity=0.188  Sum_probs=238.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHHHHHHhchh--H-hHHHHHHHHHHhhhhhhhhh
Q 008615          141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAYAPG--L-GVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       141 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +.+..+...++..+..++..|+.|.++|+.|+||..+ +...+..+..++..++++  + +..++.-.+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            4567889999999999999999999999999766554 455555556666666554  4 44555678888998889999


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhh--hccc----------------CCCCcchHHHhhhHHHHHHHHH
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQI----------------NAVGGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l~----------------~~~~~wr~~f~~~~~~~~~~~~  278 (559)
                      -.+++.+..++++-++..++-.....+|..+.-++.  ....                +.. .-|..+.+.++..++..+
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGE-DVRITGLLAALWWLLFAL  214 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccc-cchhHHHHHHHHHHHHHh
Confidence            999999999998877777766666666655544332  1111                111 467777777777766554


Q ss_pred             Hh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCc
Q 008615          279 GM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN  357 (559)
Q Consensus       279 ~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (559)
                      -. +..++.++-             .                   ........+.         -++-+.+++++.++++
T Consensus       215 Pm~~~v~~~~~~-------------~-------------------~~~~~~l~~g---------~k~L~~t~k~i~~~~~  253 (438)
T COG2270         215 PMILNVHDAEKI-------------S-------------------SPPPTALRNG---------FKELKSTFKEIRGRKN  253 (438)
T ss_pred             HHHhcccccccc-------------c-------------------ccchHHHHHH---------HHHHHHHHHHHhcccc
Confidence            43 445544320             0                   0000000000         0111224556666666


Q ss_pred             hhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHH
Q 008615          358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI  436 (559)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  436 (559)
                      ...+++..++    +.-+.+....+...+-. ++|.+. .+..++.....+.+++|+++.|++.||+|.|+++.+++++.
T Consensus       254 i~~FLiA~~~----~~DGv~til~~~~~fg~~~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~  328 (438)
T COG2270         254 LVLFLIARFF----YIDGVNTILAMGGVFGAADLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL  328 (438)
T ss_pred             hHHHHHHHHH----HHhhHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence            5655544333    33344556666666666 678887 78889999999999999999999999999999999888877


Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008615          437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE  516 (559)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  516 (559)
                      .+.++.....     . ....+....++.+.+.++......++..+.+|+++.++.+|+++..+...+.++|...+.+.+
T Consensus       329 ~~~~~~~~~~-----~-~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         329 SIAALYLIFL-----E-GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             HHHHHHHHHc-----c-ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            7665555432     1 223333444455555566677778999999999999999999999999999999999999999


Q ss_pred             hcCc-hhhHHHHHHHHHHHHHHHHhhccCCC
Q 008615          517 LLGA-ENIFLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       517 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                      .+|- +..+....++.+++.++ +...|..+
T Consensus       403 iTg~~r~g~~~i~vll~iGl~~-L~~v~~~~  432 (438)
T COG2270         403 ITGSSRAGVLSIIVLLLIGLLL-LLRVKVPG  432 (438)
T ss_pred             HhcchhhHHHHHHHHHHhhHhh-EEeecCCC
Confidence            8874 44455555555555543 33444443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.77  E-value=1e-17  Score=161.14  Aligned_cols=399  Identities=16%  Similarity=0.196  Sum_probs=231.3

Q ss_pred             ccccchhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008615           90 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF  169 (559)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr  169 (559)
                      +.++.+|+..+++.+..    ++.+...+++.+...+..++   -|  .+.+.+..||+.++..++.+++++++|.+..|
T Consensus        27 ~~~~t~wrsi~l~~~~s----fl~~v~~sI~~~s~wpYl~~---lD--~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k   97 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNS----FLVAVQFSIYLTSMWPYLQK---LD--PTATATFFGLVIAASSLGHAIFSLIFGIWSNK   97 (488)
T ss_pred             cccCCchHhHHHHHHHH----HHHhhhheEEEeecchhhhh---cC--CCCCcchhhHHHHHHHHHHHhcchhhcccccc
Confidence            34456677666555544    44444444443333222221   12  57788899999999999999999999999999


Q ss_pred             hch-HHHHHHHHHHHHHHHHHH-Hhc---h-hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHH
Q 008615          170 LGR-KRELIIAAVLYALGALTT-AYA---P-GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVL  243 (559)
Q Consensus       170 ~Gr-r~~~~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  243 (559)
                      .|. |+.++.|.++..+|+++. ++.   + .-+.++++|++.|+|.| ......+|+++....++|.++++....+..+
T Consensus        98 ~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl  176 (488)
T KOG2325|consen   98 TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVL  176 (488)
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence            997 899999999999999998 432   3 67889999999999988 6777889999988889999999999998888


Q ss_pred             HHHHHHHhhhcccCCC-Cc-----------chHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHH
Q 008615          244 GILLGYFVGSFQINAV-GG-----------WRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAIS  310 (559)
Q Consensus       244 G~~~g~~l~~~l~~~~-~~-----------wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~  310 (559)
                      |.++||.++..+.... .|           +-.+-|+.+++.++.++.. +++.|.++--..             ++.++
T Consensus       177 g~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~-------------~~~~~  243 (488)
T KOG2325|consen  177 GIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIID-------------KKKRS  243 (488)
T ss_pred             HHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccc-------------ccccc
Confidence            8888888876654321 02           2345677777777766655 556665430000             00000


Q ss_pred             HHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccC--chhHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 008615          311 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ  388 (559)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (559)
                                     +   ++          .+    .-.+-.+.+  .+...+++....+...+.....-....+....
T Consensus       244 ---------------~---~~----------~~----~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~  291 (488)
T KOG2325|consen  244 ---------------V---EE----------EK----SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMV  291 (488)
T ss_pred             ---------------c---hh----------hc----cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence                           0   00          00    000111111  11222222222222222222222233344444


Q ss_pred             HcCCCCchhHHH---HHHHHHHHHHHHHHHHHHHh-hhcCCcchhhhhHHHHHHHHHHHHHHHHhhcC------------
Q 008615          389 SAGFSAAADATR---VSVVIGVFKLVMTWIAVAKV-DDLGRRPLLIGGVCGIALSLLLLSAYYKILGG------------  452 (559)
Q Consensus       389 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  452 (559)
                      ..+.........   .....++..+...+...+.. .++.+|..+..+.+....+..+....+.....            
T Consensus       292 ~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~  371 (488)
T KOG2325|consen  292 MYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGC  371 (488)
T ss_pred             HhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCc
Confidence            455554333333   33333333333333333332 23344555555544443333333211111000            


Q ss_pred             --------------chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Q 008615          453 --------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL  518 (559)
Q Consensus       453 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  518 (559)
                                    +.+..+....+..+...........+..+|...+..+++..|+.......+..++|.+...+....
T Consensus       372 ~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~  451 (488)
T KOG2325|consen  372 DFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS  451 (488)
T ss_pred             CcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence                          000111111111111111111223356678888999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          519 GAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       519 g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      |+++.+.+.++..++...+...+.+
T Consensus       452 g~~~v~~~~~~~~l~~~~l~~~~~~  476 (488)
T KOG2325|consen  452 GPRPVWIILLCLLLVVAALWIVFLK  476 (488)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988887776666655554444333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=4.2e-16  Score=156.13  Aligned_cols=378  Identities=18%  Similarity=0.215  Sum_probs=252.5

Q ss_pred             HHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 008615          104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  183 (559)
                      ++.++..+..++..+++...+..+.+.       |+++.++.|++.+.+-++..+...+..+..-|.-|-+++-+|.+++
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m  172 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLM  172 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHH
Confidence            444555666777777777777777666       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhch-------------------h--------------------------------Hh-HHHHHHHHHHhhhh
Q 008615          184 ALGALTTAYAP-------------------G--------------------------------LG-VLLVGRLLYGLGIG  211 (559)
Q Consensus       184 ~i~~~~~~~~~-------------------~--------------------------------~~-~l~~~r~l~G~~~g  211 (559)
                      +++++++++-+                   +                                ++ .++++.++.|+|..
T Consensus       173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T  252 (735)
T KOG3626|consen  173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT  252 (735)
T ss_pred             HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence            99999998720                   0                                22 56667999999999


Q ss_pred             hhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC------------------CcchHHHhhhHHHH
Q 008615          212 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------------GGWRYMYGLSAPLA  273 (559)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------------------~~wr~~f~~~~~~~  273 (559)
                      ..++...+|+-|...+++-+..+|+..+...+|+++|.++|+++...+                  +-|..-|++.+.+.
T Consensus       253 pi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~  332 (735)
T KOG3626|consen  253 PIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALL  332 (735)
T ss_pred             CCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999876422                  14666688888888


Q ss_pred             HHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhc
Q 008615          274 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF  353 (559)
Q Consensus       274 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (559)
                      ++..+.++++|....-.             +.+...+..+..+.+++... ......+         +-+.-....+.++
T Consensus       333 ~~~a~p~f~fPk~lp~~-------------~~~~~~~~~~~~k~~~~~~~-~~~~~~~---------~ikdfp~s~~~ll  389 (735)
T KOG3626|consen  333 LFSAVPLFFFPKELPKS-------------QKRKRARDLHVLKTESGGAK-SDKTFGK---------KIKDFPKSIKRLL  389 (735)
T ss_pred             HHHHHHHHhCcccCccc-------------cccchhhhhccccccccccc-CCcchhh---------hHHHHHHHHHHHh
Confidence            88888888888754200             00000000011111100000 0000000         0011123467788


Q ss_pred             ccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCC--cchh
Q 008615          354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIG-VFKLVMTWIAVAKVDDLGR--RPLL  429 (559)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~--~~~~  429 (559)
                      +||.+...++...+-.    ..+..+..|+|.|+++ ++.+. ..+..+....+ .+..+|.+++|++..|+.-  |...
T Consensus       390 ~N~if~~~~l~~~~~~----~~~~G~~tFlPKyLE~Qfg~sa-s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a  464 (735)
T KOG3626|consen  390 SNPIFMLVVLASVIES----LAITGYITFLPKYLETQFGISA-SLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAA  464 (735)
T ss_pred             cCchHHHHHHHHHHHH----HHHhhHHHhhHHHHHHHcCCCH-HHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHH
Confidence            8886665555444433    3445688899999976 55555 56666654444 4567888899999998754  3444


Q ss_pred             hhhHHHHHHHHHHHHHHHH------------------------h------------------------------------
Q 008615          430 IGGVCGIALSLLLLSAYYK------------------------I------------------------------------  449 (559)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~------------------------~------------------------------------  449 (559)
                      ...++...+..+.+.....                        .                                    
T Consensus       465 ~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC  544 (735)
T KOG3626|consen  465 KFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGC  544 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCC
Confidence            4333333333333211100                        0                                    


Q ss_pred             -----hc------------C--------------------chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhH
Q 008615          450 -----LG------------G--------------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG  492 (559)
Q Consensus       450 -----~~------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  492 (559)
                           ..            .                    .....++.+++..+....+..|.. .++...+|++.|..+
T Consensus       545 ~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~-~i~LR~V~~e~ks~A  623 (735)
T KOG3626|consen  545 TESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGM-LIVLRCVPPEEKSFA  623 (735)
T ss_pred             cccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcce-EEEEEccCchhchhh
Confidence                 00            0                    001222222333333333334444 667788999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHhhHHHHHh
Q 008615          493 ISLAVLT-NFGSNAIVTFAFSPLKEL  517 (559)
Q Consensus       493 ~g~~~~~-~~~g~~i~~~i~g~l~~~  517 (559)
                      +|+..++ +-+|.+-+|+++|+++|.
T Consensus       624 lG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  624 LGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             hHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            9998876 667888899999999985

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.70  E-value=2.2e-14  Score=134.06  Aligned_cols=329  Identities=17%  Similarity=0.134  Sum_probs=216.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----hHHHHH-HHHHHHHHHHHHHHhc-----h--------h-Hh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELI-IAAVLYALGALTTAYA-----P--------G-LG  197 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~-~~~~~~~i~~~~~~~~-----~--------~-~~  197 (559)
                      +++...-++.+.++..+.. ...+.+|+.+|+.+     ||..++ .|.++.+.+..+..++     .        . .+
T Consensus        10 L~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g   88 (403)
T PF03209_consen   10 LGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG   88 (403)
T ss_pred             hccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence            8899999999999887765 46999999999999     776554 5666666665555542     2        2 22


Q ss_pred             --HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhH--HHH
Q 008615          198 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA--PLA  273 (559)
Q Consensus       198 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~--~~~  273 (559)
                        ...+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+.+.+..-|..-.+..  ++.
T Consensus        89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~  168 (403)
T PF03209_consen   89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA  168 (403)
T ss_pred             HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence              2334467789999999999999999999999999999999999999999999999998887744444433332  222


Q ss_pred             HHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhc
Q 008615          274 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF  353 (559)
Q Consensus       274 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (559)
                      ++..++..+-.|.+. -            ..           ...                   ++.++..-...+++++
T Consensus       169 ~~l~~ia~wg~E~r~-~------------~~-----------~~~-------------------~~~~~~~f~~a~~~~~  205 (403)
T PF03209_consen  169 LLLNLIALWGQEPRR-S------------RR-----------AAA-------------------AERPRPPFREAWRQVW  205 (403)
T ss_pred             HHHHHHHHHhcccCC-c------------cc-----------ccC-------------------CCCCCccHHHHHHHHH
Confidence            222222233222211 0            00           000                   0001111223466777


Q ss_pred             ccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcchhhhh
Q 008615          354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGG  432 (559)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~  432 (559)
                      .+|+.+++.+..++..+.++.-....-   |+=-+-+|.+. .+...++...+.+.++|-.+.|++.. |.++++...++
T Consensus       206 ~~~~a~~f~~fl~l~t~a~~~QD~iLE---Pygg~Vfgmsv-~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G  281 (403)
T PF03209_consen  206 ASPQARRFFVFLFLGTLAFFMQDVILE---PYGGEVFGMSV-GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG  281 (403)
T ss_pred             hCCChhHHHHHHHHHHHHHHhhHHHcC---CchhHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            788877777655555443322111111   11123356666 78888999999999999999998766 67777877788


Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhH
Q 008615          433 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS  512 (559)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g  512 (559)
                      ..+..+++.++......  .+.+......++++.+.+ .+.....+...++..++..|..+|.....+.++..++..+.|
T Consensus       282 ~~~~~~~f~lii~a~~~--~~~~~~~~~~~l~G~g~G-~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  282 CLLGALAFALIILAGPL--GSPWLFRPGVFLLGLGNG-LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG  358 (403)
T ss_pred             HHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777666654332  234443333333333332 222233355667778899999999999999999999999999


Q ss_pred             HHHHh
Q 008615          513 PLKEL  517 (559)
Q Consensus       513 ~l~~~  517 (559)
                      .+.|.
T Consensus       359 ~~~D~  363 (403)
T PF03209_consen  359 ALRDL  363 (403)
T ss_pred             HHHHH
Confidence            88874

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.68  E-value=3.5e-18  Score=171.70  Aligned_cols=379  Identities=19%  Similarity=0.194  Sum_probs=3.0

Q ss_pred             HhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q 008615          110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  189 (559)
                      .+..+...+++...+..+.+.       |+++.++.|++.+.+-++..+..++..++.+|..|-|++-+|.++.++++++
T Consensus        12 ~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen   12 GLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            344456666666677777666       9999999999999999999999999999999988889999999999999998


Q ss_pred             HHhch--------------------------------------------------hHhHHHHHHHHHHhhhhhhhhhhhh
Q 008615          190 TAYAP--------------------------------------------------GLGVLLVGRLLYGLGIGLAMHGAPL  219 (559)
Q Consensus       190 ~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~  219 (559)
                      +++-+                                                  -+..++++.++.|+|....++...+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            87510                                                  0346788899999999999999999


Q ss_pred             hhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC---------------------CcchHHHhhhHHHHHHHHH
Q 008615          220 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------------------GGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       220 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---------------------~~wr~~f~~~~~~~~~~~~  278 (559)
                      |+-|..++++-+..+|+..+...+|+++|.++|+.+++.+                     +.|..-|++.+++.++..+
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999876421                     1365566777777777666


Q ss_pred             HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCch
Q 008615          279 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL  358 (559)
Q Consensus       279 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (559)
                      .++++|+...-...           ..++.+.  ++.+.++...    +...+...........+.-....+++++||.+
T Consensus       245 pl~~FPk~lp~~~~-----------~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f  307 (539)
T PF03137_consen  245 PLFFFPKKLPGTSE-----------RQEEKES--SERKEEDSDK----DSFKDPKSKKSFGKSIKDFPKALKRLLTNPVF  307 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHcCCccCCCccc-----------ccchhhh--hhcchhhhhh----hcccccccccchhhhhhhHHHHHHHHhcChHH
Confidence            66777764320000           0000000  0000000000    00000000000001112224456788888866


Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCC--cchhhhhHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVI-GVFKLVMTWIAVAKVDDLGR--RPLLIGGVC  434 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~  434 (559)
                      ....++.....+    ....+..|.|.|++. ++.++ ..+.++.... ..+..+|.+++|++.+|++-  |..+....+
T Consensus       308 ~~~~la~~~~~~----~~~G~~tF~pKylE~QF~~sa-s~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v  382 (539)
T PF03137_consen  308 MCLILAGVFESF----IVSGFATFLPKYLESQFGLSA-SQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV  382 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCH-HHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence            655554444333    344678889999876 55554 5555554433 34678899999999999753  444433333


Q ss_pred             HHHHHHHHHHHH--------------HHh-------h--c-------------------------Cchh-HHHHHHHHHH
Q 008615          435 GIALSLLLLSAY--------------YKI-------L--G-------------------------GFPL-VAVSALLLYV  465 (559)
Q Consensus       435 ~~~~~~~~~~~~--------------~~~-------~--~-------------------------~~~~-~~~~~~~~~~  465 (559)
                      ...++.+.+...              ...       .  .                         .... ..++..++..
T Consensus       383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~  462 (539)
T PF03137_consen  383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS  462 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence            333333221100              000       0  0                         0011 1122222223


Q ss_pred             HHhhcccccccceeecccCCccchhhHHHHHHHH-HHHHHHHHHHhhHHHHHhc
Q 008615          466 GCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELL  518 (559)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~i~g~l~~~~  518 (559)
                      .+......|.. ...-..+|+++|+.+.|+...+ +.+|.+-+|+++|.+.|..
T Consensus       463 ~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  463 FFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            33333444444 4556788999999999999876 6668899999999999974

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.67  E-value=1.3e-15  Score=154.75  Aligned_cols=176  Identities=14%  Similarity=0.088  Sum_probs=137.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH---HHhchhHhHHHHHHHHHHhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAPGLGVLLVGRLLYGLGIGLAM  214 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~  214 (559)
                      +|.+..+.++..+...++..++.++.|+++||+|||++++++.++..++.+.   ...+++...+++++++.|++.+...
T Consensus       281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  360 (490)
T PRK10642        281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT  360 (490)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888899999999999999999999999998887654443332   2234567778889999998877777


Q ss_pred             hhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhh
Q 008615          215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA  294 (559)
Q Consensus       215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~  294 (559)
                      .....++.|.+|++.|+.++++......++..++|.+.+++.+...+|+.++++..+++++.++..+++||+|+|+..+.
T Consensus       361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~  440 (490)
T PRK10642        361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA  440 (490)
T ss_pred             HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence            77788889999999999999975555566678888888887765546888887777777777777778899998765431


Q ss_pred             ccCCCchhhhHHHHHHHHHhhcC
Q 008615          295 VQGKGSLQEYKEQAISALGKLRR  317 (559)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~  317 (559)
                          .+.+++.+|+++.++++++
T Consensus       441 ----~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        441 ----TPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             ----cccccchhhHHHHhhcccc
Confidence                1234778889999988873

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.62  E-value=3e-15  Score=124.83  Aligned_cols=136  Identities=31%  Similarity=0.444  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcc
Q 008615          149 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ  228 (559)
Q Consensus       149 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  228 (559)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++.+++.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc-cCC
Q 008615          229 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPP  285 (559)
Q Consensus       229 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e  285 (559)
                      +|++.+++......+|..+++.+++.+.+.. +|++.|++.+++.++..+..++ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999988776 8999999988887776665544 444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.55  E-value=1.2e-13  Score=136.72  Aligned_cols=345  Identities=18%  Similarity=0.121  Sum_probs=210.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----hHHHHHHHHHHHHHHHHHHHhc----hhHhHHHHHHHHHHh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLLYGL  208 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~  208 (559)
                      +|+++.+...+.++..+...+ .+++|.++|-+-     ||+-++++.++.+++.+.++..    .+.....++-++..+
T Consensus        20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~   98 (433)
T PF03092_consen   20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF   98 (433)
T ss_pred             cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            999999999999988887766 677999999763     5556667777776666655553    356677777888899


Q ss_pred             hhhhhhhhhhhhhhccCCc--ccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCc
Q 008615          209 GIGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS  286 (559)
Q Consensus       209 ~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  286 (559)
                      |......++-+++.|...+  +.|+...+.......+|.+++..++|.+.+.. ++|+.|.+.+++.++..+..+++.|.
T Consensus        99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen   99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999998843  34678888888899999999999999998887 89999999888877776655554332


Q ss_pred             hHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHH-HH
Q 008615          287 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII-GG  365 (559)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  365 (559)
                      .+ .       +.     .++.    .....+ +.+.    ....          -++.....++.++.+..+...+ ..
T Consensus       178 ~~-~-------~~-----~~~~----~~~~~~-~~~~----~~~~----------~~~~~~~l~~~~~~~~i~~~~~~~~  225 (433)
T PF03092_consen  178 RK-V-------RP-----ADEV----FSFGKE-EVPC----LFGS----------FREQLSELWRALQQRAIWQPILFFI  225 (433)
T ss_pred             cc-c-------cc-----cchh----hccccc-ccch----hhHH----------HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            10 0       00     0000    000000 0000    0000          0111122445555555554443 11


Q ss_pred             HHHHHHHhhChhh-HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHH
Q 008615          366 GLVLFQQITGQPS-VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS  444 (559)
Q Consensus       366 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  444 (559)
                      ++..+.... ... ..++.......-++++ ...+.+..+..++.++|..+..+...+..-|+++....++..+..+.-.
T Consensus       226 ~~~~~~~~~-~~a~~fy~~~~~~~gp~fs~-~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~  303 (433)
T PF03092_consen  226 FFFNLPPSI-SSASSFYFQTDALGGPHFSP-SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDL  303 (433)
T ss_pred             HHHHhccCC-CCccEEEEEeccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccE
Confidence            111111111 111 1112111111111444 5666666777777777777777666666666666555544433322211


Q ss_pred             HHH-----HhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 008615          445 AYY-----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG  519 (559)
Q Consensus       445 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  519 (559)
                      ...     ...-...+..+.--.+........+.|.. ..++|+.|+..-|+.+++...+.++|..++..+...+.+.+|
T Consensus       304 ~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  304 LLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             EEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            000     00001112233333344444444555555 667899999999999999999999999999999998888766

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=1.3e-13  Score=143.28  Aligned_cols=141  Identities=17%  Similarity=0.130  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 008615          145 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET  224 (559)
Q Consensus       145 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  224 (559)
                      ..+...+..++..++.++.|+++||+|||+++++++++.+++.++.+++++...+++++++.|++.++.++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556777899999999999999999999999999999999999999998888888899999998888999999999999


Q ss_pred             CCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCch
Q 008615          225 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP  287 (559)
Q Consensus       225 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p  287 (559)
                      +|.+.|++++|+..+...+|.++||++++.+...  +...+|++.+++.++..++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999887654  456788888888888777777788864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.52  E-value=1.9e-12  Score=127.04  Aligned_cols=315  Identities=17%  Similarity=0.190  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhh--hhhhhhhhhhhhhccCCcc
Q 008615          151 GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG--IGLAMHGAPLYIAETCPSQ  228 (559)
Q Consensus       151 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~  228 (559)
                      ...+...+..+..|.++||+|||..+...++...+..+...+.. +|.++    +.|+.  .+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            34677889999999999999999999999998888888777765 33333    44432  3446677888999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHH
Q 008615          229 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQ  307 (559)
Q Consensus       229 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~  307 (559)
                      +|...+++.......+..++|.+++.+.... |.-..|++..+..++..+.. +++||+-.-             ++.++
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~-------------~~~~~  210 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQE-------------KERSD  210 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCc-------------ccccc
Confidence            9999999999999999999999999988877 88889999988888876655 567886420             00000


Q ss_pred             HHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcc---cCchhHHHHHHHHHHHHHhhChhhHHHhHH
Q 008615          308 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ---GPNLKAFIIGGGLVLFQQITGQPSVLYYAG  384 (559)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (559)
                           ...+.........                 ......+....+   ++....+.+...+.......+...   ..+
T Consensus       211 -----~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~---~~~  265 (463)
T KOG2816|consen  211 -----ATLRELTPGSLDS-----------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASD---VLL  265 (463)
T ss_pred             -----ccccccCCCcccc-----------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCcee---EEE
Confidence                 0000000000000                 000000111111   122222222222222222111110   011


Q ss_pred             HHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 008615          385 PIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAV-AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL  462 (559)
Q Consensus       385 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (559)
                      .++ ..++++. ...+.+.........++.++.. .+...++.++....|+....+....+++.     +..|..+....
T Consensus       266 ~yl~~~f~w~~-~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~v  339 (463)
T KOG2816|consen  266 LYLKAKFGWNK-KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAGV  339 (463)
T ss_pred             EEEeeecCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHHH
Confidence            122 2356776 6777777777777777777776 77788898888888888888887777763     33443332222


Q ss_pred             HHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008615          463 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL  517 (559)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  517 (559)
                      +  ..+.....|...+.......++.+|++.++...+..+...++|.+.+.+...
T Consensus       340 ~--~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  340 V--VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             H--HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            2  2233344566668888888999999999999999999999999999988654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.51  E-value=5.1e-13  Score=132.12  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=125.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++.|...+..
T Consensus       247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~  326 (393)
T PRK15011        247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG  326 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999888888888999999999999999998888777666665555567788888889999998888777777


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP  285 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  285 (559)
                      ..+..|.+|+ +|++++++++...++|..+++.+++.+.+.. ||+..|++.+++.++..+..++.+|
T Consensus       327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888999875 5999999999999999999999999998877 9999999988888887777776654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.50  E-value=9.3e-13  Score=124.30  Aligned_cols=178  Identities=20%  Similarity=0.178  Sum_probs=151.3

Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +..++...+..|...+......-.+|.+.++++.+. ..+|...+.+.++..++.++...+.+|+.||++++..+.++.+
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~-~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSE-GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            334444445555555555567788899999999998 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL  518 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  518 (559)
                      +.++..+      ..++..+...=+..+.....+.++...+..+++|+++|++++++......++..+|.++..++-|.+
T Consensus        91 ~n~l~al------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~  164 (394)
T COG2814          91 SNLLSAL------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF  164 (394)
T ss_pred             HHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            9888876      3345555555555566666666777789999999999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhhcc
Q 008615          519 GAENIFLLFAAIAFLAVLFIVRTVP  543 (559)
Q Consensus       519 g~~~~~~~~~~~~~~~~~~~~~~~~  543 (559)
                      ||+.+|+..+++.++..+..+..+|
T Consensus       165 GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         165 GWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999898888

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=1.1e-13  Score=138.22  Aligned_cols=147  Identities=16%  Similarity=0.217  Sum_probs=128.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             hhhhhccCCcccchhhhhH-HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCC
Q 008615          218 PLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPP  285 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e  285 (559)
                      ..++.+.+|++.|+...+. ++....+|.++++.++|++.+.. |||..|++.+++.++..++. +.+++
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999988887655 67788999999999999999987 89999999888877655544 33444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.48  E-value=1.6e-13  Score=136.23  Aligned_cols=147  Identities=18%  Similarity=0.301  Sum_probs=126.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch----hHhHHHHHHHHHHhhhhhhhh
Q 008615          140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       140 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      .+....+.+.++..++..++.++.|+++||+|||++++++.++.+++.++.....    +++.+++.+++.|++.+...+
T Consensus       248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~  327 (418)
T TIGR00889       248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI  327 (418)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999999999999999999999999999988877776632    346677889999999998889


Q ss_pred             hhhhhhhccCCcccchhhhhHHH-HHHHHHHHHHHHhhhcccCCCC-----cchHHHhhhHHHHHHHHHHh-hccCCc
Q 008615          216 GAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-WSLPPS  286 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~-----~wr~~f~~~~~~~~~~~~~~-~~~~e~  286 (559)
                      ....++.|++|+++|++++++.+ ...++|.++||+++|.+.+..+     ||+..|++.+++.++..++. ++++|+
T Consensus       328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999997 6789999999999999887631     69999999888888766655 556665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.48  E-value=1.7e-12  Score=128.95  Aligned_cols=181  Identities=14%  Similarity=0.046  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      |...+..++.++.............|.+.++++.+. .+.++......++..++.+..|++.||+|||+.+..+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            344444455555555545556667777778888887 8899999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH--
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE--  516 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~--  516 (559)
                      +.++..+.     .+ ...+...-++.+.......+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+  
T Consensus        86 ~~~~~~~~-----~~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        86 ASTATMFA-----TG-PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHHHHh-----cC-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            87776642     22 23333334444444445556666778999999999999999999999999999999998875  


Q ss_pred             ----hcCchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008615          517 ----LLGAENIFLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       517 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                          ..||++.|++.++..++..++.++++||++
T Consensus       160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence                358999999988877776666666777764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.47  E-value=3.8e-13  Score=132.61  Aligned_cols=139  Identities=19%  Similarity=0.185  Sum_probs=123.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhH--hHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~  215 (559)
                      ++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++.  ..+++..++.|++.+...+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence            78888899999999999999999999999999999999999999998888888776643  3345667888998888888


Q ss_pred             hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHH
Q 008615          216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG  277 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~  277 (559)
                      ....++.|.+|+++|++++++......+|..++|.+++.+.+.. ||++.|++.+++.++..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTSL  375 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHhc
Confidence            88889999999999999999999999999999999999988877 99999999887776643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.46  E-value=9.2e-13  Score=128.50  Aligned_cols=145  Identities=37%  Similarity=0.512  Sum_probs=136.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHH-HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR-ELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+.++..++.++..+.++.+.+++..++.|++.+...+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  285 (352)
T cd06174         206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA  285 (352)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence            4889999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL  283 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  283 (559)
                      ...++.|..|+++|++.+++......+|..+++.+.+.+.+.. +|++.+++.+++.++..+..+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999999999999999998877 99999999999998877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03545 putative arabinose transporter; Provisional

Probab=99.45  E-value=3.1e-12  Score=126.61  Aligned_cols=160  Identities=16%  Similarity=0.113  Sum_probs=125.6

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      .....|.+.++++.+. .+.++......++..++.+..|++.||+|||+++..+.++.+++.+.....     ++.+. +
T Consensus        28 ~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~-l  100 (390)
T PRK03545         28 PVGLLSDIAQSFHMQT-AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFTV-L  100 (390)
T ss_pred             HHcchHHHHhHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHHH-H
Confidence            3345688888899887 888999999999999999999999999999999999988888887766542     22333 3


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  538 (559)
                      ....+..+.......+...+++.|.+|+++|++++|+......+|..++|++.+.+.+..||++.|++.+++.++..++.
T Consensus       101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        101 LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334455557888999999999999999999999999999999999999999999999888877776665


Q ss_pred             HhhccCC
Q 008615          539 VRTVPET  545 (559)
Q Consensus       539 ~~~~~~~  545 (559)
                      +...|+.
T Consensus       181 ~~~~~~~  187 (390)
T PRK03545        181 IKLLPLL  187 (390)
T ss_pred             HHhCCCC
Confidence            5555554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.45  E-value=3.4e-12  Score=125.97  Aligned_cols=160  Identities=21%  Similarity=0.179  Sum_probs=124.9

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      .....|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+.++.+++.++....     .+.+ .+
T Consensus        39 ~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~-~l  111 (394)
T PRK10213         39 PVSLLTPMAQDLGISE-GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----NSFS-LL  111 (394)
T ss_pred             HHhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----ChHH-HH
Confidence            3345677888888887 788888888999999999999999999999999999999888877665532     2223 33


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  538 (559)
                      ...-+..+.......+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..||++.|++.+++.++..++.
T Consensus       112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444556667889999999999999999999999999999999999999999999998877766655554


Q ss_pred             HhhccCC
Q 008615          539 VRTVPET  545 (559)
Q Consensus       539 ~~~~~~~  545 (559)
                      ....||.
T Consensus       192 ~~~~p~~  198 (394)
T PRK10213        192 IKSLPSL  198 (394)
T ss_pred             HHHCCCC
Confidence            4445654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.45  E-value=1.2e-12  Score=129.98  Aligned_cols=141  Identities=21%  Similarity=0.230  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 008615          144 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE  223 (559)
Q Consensus       144 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  223 (559)
                      +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45666778889999999999999999999999999999888888888888888888889999999999888888888889


Q ss_pred             cCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC
Q 008615          224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP  285 (559)
Q Consensus       224 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  285 (559)
                      .+|+++|+++.+++.....+|..+++.+.+.+.+.. ||++.|++.+++.++..+..+++++
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999988877 8999999988888887666655544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.45  E-value=2.2e-12  Score=127.64  Aligned_cols=164  Identities=20%  Similarity=0.087  Sum_probs=128.1

Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      .......|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+.++.+++.+.+...     + ...
T Consensus        22 ~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~   94 (385)
T TIGR00710        22 DMYLPAFPEIAADLSTPA-SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----N-NIE   94 (385)
T ss_pred             HHhcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-cHH
Confidence            344455677888888887 789999999999999999999999999999999999888887777766542     2 222


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+....+..+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+++.+++.++..+
T Consensus        95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (385)
T TIGR00710        95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA  174 (385)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            23333333343333344555678899999999999999999999999999999999999999999999888887777776


Q ss_pred             HHHhhccCCCC
Q 008615          537 FIVRTVPETKG  547 (559)
Q Consensus       537 ~~~~~~~~~~~  547 (559)
                      +.++..||.++
T Consensus       175 ~~~~~~~~~~~  185 (385)
T TIGR00710       175 LIFFILPETLP  185 (385)
T ss_pred             HHHHhCCCCCC
Confidence            66666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=99.44  E-value=1.4e-12  Score=129.65  Aligned_cols=178  Identities=19%  Similarity=0.141  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHH
Q 008615          361 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL  440 (559)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  440 (559)
                      .++...+..+...........+.|.+.++.+.+. .+.++......++.+++.++.|+++||+|||+.+..+.++.+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~   96 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT   96 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3333333333333333456667788888888877 788999999999999999999999999999999998888777776


Q ss_pred             HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCc
Q 008615          441 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA  520 (559)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~  520 (559)
                      +++...     . +...+....++.++......+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..||
T Consensus        97 ~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        97 LLCALA-----T-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHc-----c-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            665532     2 2223333334444444444566668899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          521 ENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      +..+++.+++.++..++.+.+.++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCC
Confidence            9988888766666666666666654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.44  E-value=3.5e-12  Score=127.85  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=124.7

Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      ..+..+.|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+.++.++.+++.+++...     .+.+ 
T Consensus        40 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~-  112 (434)
T PRK11663         40 KSFNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----SSLW-  112 (434)
T ss_pred             hhHHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----hHHH-
Confidence            356677889999999987 788999999999999999999999999999999999988888887766542     2222 


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+....+..+.......+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+..||++.|++.+++.++..+
T Consensus       113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            22222223333333334455578889999999999999999999999999999999999999999999888777665555


Q ss_pred             HHHhhccC
Q 008615          537 FIVRTVPE  544 (559)
Q Consensus       537 ~~~~~~~~  544 (559)
                      +..+..+|
T Consensus       193 ~~~~~~~~  200 (434)
T PRK11663        193 FLCWRLRD  200 (434)
T ss_pred             HHHHHcCC
Confidence            44444444

>PRK10054 putative transporter; Provisional

Probab=99.43  E-value=4.5e-12  Score=125.18  Aligned_cols=161  Identities=12%  Similarity=0.040  Sum_probs=119.4

Q ss_pred             hhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchh
Q 008615          377 PSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL  455 (559)
Q Consensus       377 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (559)
                      .....+.+.+++ +.|.+. .+.++......++.+++.++.|+++||+|||+.+..+.++.+++.+++.+.     ++.+
T Consensus        24 ~~~~~~l~~~l~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~   97 (395)
T PRK10054         24 GATLPFMTIYLSRQYSLSV-DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVT   97 (395)
T ss_pred             HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHH
Confidence            345556666664 568877 889999999999999999999999999999999988888777776665542     2222


Q ss_pred             HHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHH
Q 008615          456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV  535 (559)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  535 (559)
                      ..+....+. +.......+....+..|.+|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|.+.+++.++..
T Consensus        98 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~  175 (395)
T PRK10054         98 LVVLFFALI-NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPL  175 (395)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHH
Confidence            222222222 222223345556778899999999999999999999999999999998875 689999998887777766


Q ss_pred             HHHHhhccCC
Q 008615          536 LFIVRTVPET  545 (559)
Q Consensus       536 ~~~~~~~~~~  545 (559)
                      ++..+..++.
T Consensus       176 i~~~~~~~~~  185 (395)
T PRK10054        176 VFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHhcc
Confidence            5555544443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.42  E-value=1.8e-12  Score=129.10  Aligned_cols=147  Identities=22%  Similarity=0.193  Sum_probs=127.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|++.+...+..
T Consensus       250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  329 (406)
T PRK11551        250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL  329 (406)
T ss_pred             CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence            68889999999999999999999999999999999999988877777777777777888888888889999888888889


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccC
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP  284 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  284 (559)
                      .+++.|.+|+++|++++++......+|..+||.+++.+.+...+|...+++.....++..++.+++.
T Consensus       330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988764677777777766666665555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.42  E-value=1.5e-10  Score=106.93  Aligned_cols=234  Identities=15%  Similarity=0.155  Sum_probs=153.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.+..|++.+....+...++..++.|.++||+|||+.-++..++++++++ +-..++++.++++|++.|++....+.+-
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999988886 5556899999999999999999988887


Q ss_pred             hhhh-hccC----CcccchhhhhHHH-HHHHHHHHHHHHhhhcccCCCC-cchHHHhhhHHHHHHHHHHhh-ccCCchHH
Q 008615          218 PLYI-AETC----PSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMW-SLPPSPRW  289 (559)
Q Consensus       218 ~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~  289 (559)
                      -++. .|.-    |++..+..++... ...++-.+++.+++.++.+..+ |-..+|....++.++..+++. ..+|... 
T Consensus       143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg-  221 (354)
T PF05631_consen  143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG-  221 (354)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence            7764 4432    2222333333333 2233444555666666655441 347889888888877666654 3455321 


Q ss_pred             HHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHH
Q 008615          290 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL  369 (559)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (559)
                              +                    .....    +.            .+.-+..++.++++|+.+.+-   ....
T Consensus       222 --------~--------------------~~~~~----~~------------~~~~~~a~~~i~~d~ril~LG---~~qs  254 (354)
T PF05631_consen  222 --------D--------------------TSSSS----SL------------SGSFREAWRAILSDPRILLLG---LIQS  254 (354)
T ss_pred             --------C--------------------ccccc----ch------------HHHHHHHHHHHHcCchhHHHH---HHHH
Confidence                    0                    00000    00            000011234455565443332   3333


Q ss_pred             HHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          370 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                      +.....+..+..|.|.+-   ..+.....|+++..+.+..++|+.+..++..+.
T Consensus       255 lFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~  305 (354)
T PF05631_consen  255 LFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS  305 (354)
T ss_pred             HHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344444445666777765   222224688999999999999998887665543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.42  E-value=6.3e-11  Score=112.54  Aligned_cols=352  Identities=15%  Similarity=0.139  Sum_probs=214.0

Q ss_pred             cccchhHHH-HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++.-+.++...+.+..++-|++.+ ...+
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence            588888764 55666667788899999999999999999999999999999999999999999999999999888 4777


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC-CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhc
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV  295 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~  295 (559)
                      -.+++-...|+++-.++.+...++..+|..++.++|-.++... .+.+...++......+.++..+++|..++-..-+++
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~  193 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK  193 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence            8889988899999999999999999999999999988776632 255666666666666666666788876643222211


Q ss_pred             cCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhC
Q 008615          296 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG  375 (559)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (559)
                      .+......+.+     .+...+.++.......+...  ........-..-...+++..++|......+...+    ...+
T Consensus       194 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~----atcg  262 (412)
T PF01770_consen  194 PPAEQDANESE-----SDKMNESPESSSSTEKSPST--ESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAF----ATCG  262 (412)
T ss_pred             Ccccccccccc-----ccccccccccccccccCccc--ccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHH----HHhH
Confidence            11000000000     00000000000000000000  0000000000112235556667655544433333    3333


Q ss_pred             hhhHHHhHHHHHHHcC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHH--HHHHHHHHHHHhhc
Q 008615          376 QPSVLYYAGPILQSAG--FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA--LSLLLLSAYYKILG  451 (559)
Q Consensus       376 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  451 (559)
                      +..+..|...+.++..  ......-|.+-....+.+.++.+..|++..++.+..-+..+.+...  ..++++..     .
T Consensus       263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~-----t  337 (412)
T PF01770_consen  263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF-----T  337 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-----h
Confidence            4457777777777761  1122456777777778888888899988666665444443333322  22222222     2


Q ss_pred             CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHH
Q 008615          452 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV  507 (559)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~  507 (559)
                      .+.|...+..+++.+.+........ .-++.....+.-|...|+++++..+-..+.
T Consensus       338 ~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGiNtf~Al~LQtil  392 (412)
T PF01770_consen  338 GNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGINTFVALVLQTIL  392 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence            4556666666666666655443333 334444456777888888777655544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=5.1e-12  Score=124.53  Aligned_cols=145  Identities=17%  Similarity=0.158  Sum_probs=126.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.+...+..
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999888888888899999999999999999988887777666666677888888889999999999888888


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccC
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP  284 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  284 (559)
                      ..++.|..|+ +++++++++.....+|..++|.+++.+.+.. ||+..|++.+++.++..++..+++
T Consensus       310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheec
Confidence            8899998875 5679999999999999999999999988877 899999999988888777766554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=7.2e-12  Score=116.76  Aligned_cols=161  Identities=14%  Similarity=0.103  Sum_probs=137.3

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      .+..-.|.+.++.+++. .+.+.+.+.+.+..-++-++.|.++||.+.|..+..++++.++..+++++.      ++...
T Consensus        47 nF~~a~p~l~e~~~lsk-~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------~s~~~  119 (448)
T COG2271          47 NFNLAMPALIEDGGLSK-TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------PSLFL  119 (448)
T ss_pred             hHhhccHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------hHHHH
Confidence            46666788888888887 899999999999999999999999999999999999999999999999863      34555


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh--HHHHHhcCchhhHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF--SPLKELLGAENIFLLFAAIAFLAV  535 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~--g~l~~~~g~~~~~~~~~~~~~~~~  535 (559)
                      +.++..+.+.+...-.|.....+..-+|+++||+..++.|+..++|+++.|++.  +.+.++.+|+..|++-++++++..
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva  199 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA  199 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            555556666655554555557788899999999999999999999999999999  899998899999999999999888


Q ss_pred             HHHHhhccCC
Q 008615          536 LFIVRTVPET  545 (559)
Q Consensus       536 ~~~~~~~~~~  545 (559)
                      ++.++..+++
T Consensus       200 l~~~~~~rd~  209 (448)
T COG2271         200 LILLFLLRDR  209 (448)
T ss_pred             HHHHHHhCCC
Confidence            8888777654

>PRK12382 putative transporter; Provisional

Probab=99.40  E-value=2.9e-12  Score=126.94  Aligned_cols=137  Identities=21%  Similarity=0.201  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 008615          145 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET  224 (559)
Q Consensus       145 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  224 (559)
                      .++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+...+...+.+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45666778888899999999999999999999999999999888888888888888899999999998888888889999


Q ss_pred             CCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          225 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       225 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      +|+++|++++++++....+|..++|.+.+.+.+.. ||++.|++.+++.++..++.++
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999887 9999999999888776665543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.40  E-value=6.5e-12  Score=124.43  Aligned_cols=172  Identities=16%  Similarity=0.079  Sum_probs=128.9

Q ss_pred             HHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHH
Q 008615          368 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY  447 (559)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (559)
                      ..+....+........|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++..++..++... 
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-   88 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-   88 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-
Confidence            333333344455567888888888887 788888999999999999999999999999999998888877777665532 


Q ss_pred             HhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHH
Q 008615          448 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF  527 (559)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~  527 (559)
                          .+.+..+. ..+..+.......+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+++.
T Consensus        89 ----~~~~~~~~-~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         89 ----ETSSLFLA-GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             ----CcHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence                22222222 2233333333334455678889999999999999999999999999999998888888999999888


Q ss_pred             HHHHHHHHHHHHhhccCCC
Q 008615          528 AAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~  546 (559)
                      +++.++..++.+...+|++
T Consensus       164 ~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        164 AAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            8887777776666666654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.40  E-value=7.4e-12  Score=123.32  Aligned_cols=141  Identities=15%  Similarity=0.048  Sum_probs=128.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.++.++|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++++.+++.+++.|++.+...+..
T Consensus       235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~  314 (382)
T TIGR00902       235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHH-HHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhh
Q 008615          218 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW  281 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  281 (559)
                      ..++.+. |+++|++..++++ ...++|..+|+.++|++.+.. |+ ..|++.++++++..++.+
T Consensus       315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHHH
Confidence            9999998 8989999999986 578899999999999999988 76 667777777776555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.39  E-value=3e-12  Score=130.90  Aligned_cols=165  Identities=19%  Similarity=0.144  Sum_probs=132.1

Q ss_pred             ChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCch
Q 008615          375 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP  454 (559)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (559)
                      .........|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++..++.++...      ..+
T Consensus        17 ~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~   89 (485)
T TIGR00711        17 DSTIVNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV------APN   89 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC------cCC
Confidence            33456677888889998887 78899999999999999999999999999999999998888887776653      123


Q ss_pred             hHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHH
Q 008615          455 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA  534 (559)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~  534 (559)
                      ...+....+..+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..||++.|++.+.+.++.
T Consensus        90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~  169 (485)
T TIGR00711        90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIV  169 (485)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHH
Confidence            33344444444555455556667889999999999999999999999999999999999999999999999888777777


Q ss_pred             HHHHHhhccCCC
Q 008615          535 VLFIVRTVPETK  546 (559)
Q Consensus       535 ~~~~~~~~~~~~  546 (559)
                      .++.++..++.+
T Consensus       170 ~~~~~~~~~~~~  181 (485)
T TIGR00711       170 VVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHcCCcc
Confidence            666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.39  E-value=8.2e-12  Score=127.21  Aligned_cols=179  Identities=15%  Similarity=0.059  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHH
Q 008615          361 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL  440 (559)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  440 (559)
                      .++..++..+....-...+..-.|.+.++++.+. .+.++....+.++..++.+..|+++||+|||+.+..+.++..++.
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~-~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASG-NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3444444444444445567777899999988876 678889999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeeccc-CCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 008615          441 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG  519 (559)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  519 (559)
                      ++....     ++.+. ++..-++.+.......+.....+.+. .|+++|++++|+......+|..++|.+.|.+.+..|
T Consensus        86 ~~~~~a-----~~~~~-li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         86 LAAAFS-----PTASW-LIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHc-----CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            776642     22333 33333333333333444433444444 477999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhccCCC
Q 008615          520 AENIFLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                      |++.|++...+.++..++.+++.|+.+
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999988777777776666666643

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.39  E-value=1.2e-11  Score=123.67  Aligned_cols=189  Identities=15%  Similarity=0.040  Sum_probs=132.7

Q ss_pred             chhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Q 008615          349 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL  428 (559)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  428 (559)
                      ++.+.+++.++...+...+..+..    .......|.+.++.+.+. .+.++......++.+++.++.|+++||++||+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~   84 (417)
T PRK10489         10 LSLLKTHPAFRAVFIARFISIFGL----GLLGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL   84 (417)
T ss_pred             HHHHHhCCChhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence            444556777776665544444433    245667788888877766 789999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 008615          429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT  508 (559)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~  508 (559)
                      +..+..+.+++...+...... ..+....+....+..+.......+....++.+.+|+++++++.++.+....+|..++|
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  163 (417)
T PRK10489         85 ILLARGTCGLGFIGLALNAFL-PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP  163 (417)
T ss_pred             EEehHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence            988877777766555432111 1222223333333333332223344457788999999999999999999999999999


Q ss_pred             HhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          509 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       509 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      .+.+.+.+..|+++.+++.++..+++.++. ...|+
T Consensus       164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  198 (417)
T PRK10489        164 ALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPA  198 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            999999998899888887776666555443 33444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.39  E-value=5.4e-12  Score=125.33  Aligned_cols=162  Identities=17%  Similarity=0.117  Sum_probs=128.3

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      .+....|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.+++..++...     . +...
T Consensus        12 ~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~   84 (399)
T TIGR00893        12 NLSFAAPMLQEDLGLSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G-AYVS   84 (399)
T ss_pred             hhhHhHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c-CHHH
Confidence            35556677778888887 788999999999999999999999999999999999888887777766542     2 2333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      +....++.+.......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|++.|++.+++.++..++
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            33333444444444556666889999999999999999999999999999999999999999999999888877777666


Q ss_pred             HHhhccCCC
Q 008615          538 IVRTVPETK  546 (559)
Q Consensus       538 ~~~~~~~~~  546 (559)
                      .++..++++
T Consensus       165 ~~~~~~~~~  173 (399)
T TIGR00893       165 WLKFIPDPP  173 (399)
T ss_pred             hhheecCCC
Confidence            665555543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.38  E-value=1.2e-11  Score=121.85  Aligned_cols=163  Identities=14%  Similarity=0.040  Sum_probs=126.2

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      ......|.+.++.|.+. .+.++......++..++.++.|++.||+|||+.+..+..+.+++.++....     ++.+. 
T Consensus        21 ~~~~~l~~~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~~~~-   93 (382)
T PRK10091         21 GIMGVLTELAHDVGISI-PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SSYLM-   93 (382)
T ss_pred             HHHhChHHHHHHcCCCH-HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----CcHHH-
Confidence            45567788888888887 788999999999999999999999999999999999988888877766542     22333 


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      +....++.+.......+....++.|.+|+++|++++++......++..+++.+.+.+.+..||++.|.+.+++.++..+.
T Consensus        94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091         94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444667888998899999999999999999999999999999899999999988877766665


Q ss_pred             HHhhccCCCC
Q 008615          538 IVRTVPETKG  547 (559)
Q Consensus       538 ~~~~~~~~~~  547 (559)
                      .++..||.++
T Consensus       174 ~~~~lp~~~~  183 (382)
T PRK10091        174 IYFWVPDIRD  183 (382)
T ss_pred             HHHhCCCCCc
Confidence            5666676543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.38  E-value=3.2e-12  Score=127.55  Aligned_cols=138  Identities=21%  Similarity=0.298  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 008615          144 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE  223 (559)
Q Consensus       144 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  223 (559)
                      ..+.+.+++.++..++.+++|+++||+|||+.+..+.++.+++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence            45677778888899999999999999999999999998888888888888888989999999999999999999999999


Q ss_pred             cCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       224 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      ..++++|++.+++......+|..+||.+++.+.+.. ||++.|++.+++.++..+..++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887 8999999999888877665543

>PRK10504 putative transporter; Provisional

Probab=99.37  E-value=1.7e-11  Score=124.57  Aligned_cols=168  Identities=18%  Similarity=0.108  Sum_probs=127.9

Q ss_pred             HHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHh
Q 008615          370 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI  449 (559)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (559)
                      +........+..+.|.+.++.|.+. .+.++......++..++.++.|+++||+|||+.+..+..+.+++.+.....   
T Consensus        20 ~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---   95 (471)
T PRK10504         20 FMQSLDTTIVNTALPSMAQSLGESP-LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS---   95 (471)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh---
Confidence            3333344456778899999999887 777888888888989999999999999999999988877777766554421   


Q ss_pred             hcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHH
Q 008615          450 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA  529 (559)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~  529 (559)
                        .+.+ .+....++.+.......+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||++.|.+...
T Consensus        96 --~~~~-~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~  172 (471)
T PRK10504         96 --GTLN-ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP  172 (471)
T ss_pred             --CCHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence              2222 2333334444444444556667788999999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHhhccC
Q 008615          530 IAFLAVLFIVRTVPE  544 (559)
Q Consensus       530 ~~~~~~~~~~~~~~~  544 (559)
                      +..++.++.....++
T Consensus       173 ~~~l~~~~~~~~~~~  187 (471)
T PRK10504        173 VGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            777666665555554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.37  E-value=9.6e-12  Score=125.96  Aligned_cols=144  Identities=17%  Similarity=0.056  Sum_probs=112.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH--HHhchhHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT--TAYAPGLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +|++..+.++..+.+.++..++.+++|+++||+|||+.++....+..++..+  ....++.+.+.+.+++.|++......
T Consensus       289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  368 (467)
T PRK09556        289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL  368 (467)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence            7999999999999999999999999999999999998876655444433322  23345666777888888865443333


Q ss_pred             hhhhhhhccCCcccchhhhhHHHHHHHH-HHHHHHHhhhcccC------------CCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          216 GAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQIN------------AVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~------------~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      .....+.|.+|++.|+.+.|+.+....+ |..++|.+.|.+.+            .. +|+..|++.+++.++..+..++
T Consensus       369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHHHHHHHHHHHH
Confidence            3345677999999999999999988886 77999999999988            44 7999999987777776655543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.36  E-value=2.6e-11  Score=120.89  Aligned_cols=179  Identities=14%  Similarity=0.080  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      ++......+.++.............+.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~   89 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTT-VDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA   89 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344444444445444445556667788888888887 7889999999999999999999999999999999988888777


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL  518 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  518 (559)
                      +.++..+.     . ++..+....+..+.......+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus        90 ~~~~~~~~-----~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        90 GTLACGFA-----P-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHh-----c-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77666542     2 22233333344444434444555678889999999999999999999999999999999998877


Q ss_pred             C--chhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          519 G--AENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       519 g--~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      +  |+..|++.++..++. ++.....||.
T Consensus       164 ~~~w~~~f~~~~~~~~~~-~~~~~~~~~~  191 (405)
T TIGR00891       164 GDGWRALFFISILPIIFA-LWLRKNIPEA  191 (405)
T ss_pred             CccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence            6  777777654444433 3333445554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.36  E-value=5.2e-12  Score=127.07  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=120.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh--hchHHHHH--HHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF--LGRKRELI--IAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr--~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~  213 (559)
                      +|.+..+.+++.++..++..++.++.|+++||  +++|+...  .+.++.+++.+++.+.++++.+++.+++.|++.+..
T Consensus       271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~  350 (455)
T TIGR00892       271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV  350 (455)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence            78899999999999999999999999999997  34444333  344444555666777889999999999999999999


Q ss_pred             hhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHH
Q 008615          214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI  278 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~  278 (559)
                      .+...+++.|.+|++++++.+++++....+|.++||.+++.+.+..++|++.|++.+++.++..+
T Consensus       351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999988765699999998887766544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.36  E-value=2e-11  Score=119.81  Aligned_cols=161  Identities=17%  Similarity=0.038  Sum_probs=122.8

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      ......|.+..+.+.+. .+.++......++.+++.++.|+++||+|||+.+..+.++..++.+++........ .+...
T Consensus        17 ~~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   94 (365)
T TIGR00900        17 ITQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-LNIWQ   94 (365)
T ss_pred             HHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHH
Confidence            35556677777877776 78899999999999999999999999999999999888877777666654332111 12333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      +....+..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.++..+++.++
T Consensus        95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900        95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33333344444444455666889999999999999999999999999999999999999999999888877766665554


Q ss_pred             HHh
Q 008615          538 IVR  540 (559)
Q Consensus       538 ~~~  540 (559)
                      .+.
T Consensus       175 ~~~  177 (365)
T TIGR00900       175 IVS  177 (365)
T ss_pred             HHh
Confidence            443

>PRK03699 putative transporter; Provisional

Probab=99.36  E-value=2.9e-11  Score=119.71  Aligned_cols=157  Identities=10%  Similarity=0.044  Sum_probs=117.2

Q ss_pred             hhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchh
Q 008615          376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL  455 (559)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (559)
                      ...+....|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.+++.++....     ++.+
T Consensus        23 ~~~~g~~~~~i~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----~~~~   96 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPV-SSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----HSLA   96 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----chHH
Confidence            3456667788888888887 788899999999999999999999999999999998888877777666542     2223


Q ss_pred             HHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH-hcCchhhHHHHHHHHHHH
Q 008615          456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLA  534 (559)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~~g~~~~~~~~~~~~~~~  534 (559)
                      ..+ ...+..+.......+....++.|.+|+++|+.+.++.+....+++.++|.+.+.+.+ ..||++.|.+.+++.++.
T Consensus        97 ~~~-~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~  175 (394)
T PRK03699         97 LFS-IAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAI  175 (394)
T ss_pred             HHH-HHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            222 222333333333334445778899999999999999888888888999999888775 468999998877776655


Q ss_pred             HHHHH
Q 008615          535 VLFIV  539 (559)
Q Consensus       535 ~~~~~  539 (559)
                      .++.+
T Consensus       176 ~~~~~  180 (394)
T PRK03699        176 FILTL  180 (394)
T ss_pred             HHHHH
Confidence            54433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.36  E-value=2.5e-11  Score=120.83  Aligned_cols=181  Identities=18%  Similarity=0.178  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +...+...+..+........+....+.+.++++.+. .+.+.......++..++.++.|+++||+|||+.+..+..+.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            334444444444333333344445677778888887 7888888899999999999999999999999999988877777


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc
Q 008615          439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL  518 (559)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~  518 (559)
                      +.+.....     .+.+ .+....++.+.......+....++.|.+|++.++++.++......++..++|.+.+.+.+..
T Consensus        91 ~~~~~~~~-----~~~~-~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402         91 TCLAILLA-----QSIE-QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             HHHHHHHH-----ccHH-HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            76665432     2222 22233333333333333455577789999999999999988888889999999999999988


Q ss_pred             CchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008615          519 GAENIFLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       519 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                      ||++.+++.+++.+++.+..++..||++
T Consensus       165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        165 PWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999888887777766666666654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.35  E-value=2.7e-11  Score=120.36  Aligned_cols=158  Identities=15%  Similarity=0.162  Sum_probs=119.8

Q ss_pred             hHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008615          382 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL  461 (559)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (559)
                      -+|.+.++++.+. ...+.....+.++..++.++.|+++||+|||+++..+..+.+++.++....     . +...+...
T Consensus        38 ~l~~i~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~-~~~~l~~~  110 (413)
T PRK15403         38 GIINVVRDFNADV-SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----T-SMTQFLIA  110 (413)
T ss_pred             CHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----C-CHHHHHHH
Confidence            3445666778776 778888888889999999999999999999999998888777776665531     2 22223333


Q ss_pred             HHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhh
Q 008615          462 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      -++.+.......+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.++..++.++.
T Consensus       111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  190 (413)
T PRK15403        111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLA  190 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333332233344456788999999999999999999999999999999999988899999999888877777665666


Q ss_pred             ccCCC
Q 008615          542 VPETK  546 (559)
Q Consensus       542 ~~~~~  546 (559)
                      .||++
T Consensus       191 lp~~~  195 (413)
T PRK15403        191 MPETV  195 (413)
T ss_pred             CCCCc
Confidence            67654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.35  E-value=5.5e-11  Score=120.37  Aligned_cols=159  Identities=9%  Similarity=-0.004  Sum_probs=113.3

Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      .....+.|.+.++++.+. .+.+.......++..++.++.|+++||+|||+.+..+.++.+++.++....     .+.+.
T Consensus        53 ~~~~~~~~~l~~~~gls~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~  126 (476)
T PLN00028         53 FAAAPLLPIIRDNLNLTK-SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATG  126 (476)
T ss_pred             HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHH
Confidence            345556778888899887 778888888888999999999999999999999888887777766655542     22222


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH---------hcCchhhHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---------LLGAENIFLLF  527 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---------~~g~~~~~~~~  527 (559)
                       +....++.++......+. ..++.|.+|+++|++++|+.+....+|..+++.+.+.+..         ..||++.|++.
T Consensus       127 -l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~  204 (476)
T PLN00028        127 -FIAVRFFIGFSLATFVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP  204 (476)
T ss_pred             -HHHHHHHHHHHHHhhHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence             222223333333333333 3467899999999999999998888888877776655432         14799999998


Q ss_pred             HHHHHHHHHHHHhhcc
Q 008615          528 AAIAFLAVLFIVRTVP  543 (559)
Q Consensus       528 ~~~~~~~~~~~~~~~~  543 (559)
                      +++.++..++.+++.+
T Consensus       205 g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        205 GLLHIIMGILVLTLGQ  220 (476)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            8887777665555543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.35  E-value=3.2e-11  Score=119.57  Aligned_cols=161  Identities=14%  Similarity=0.088  Sum_probs=120.2

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      .....|.+.++.+.++ .+.++......++..++.++.|+++||+|||+.+..+.++..++.+.....     .+.+ .+
T Consensus        27 ~~p~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~-~l   99 (394)
T PRK11652         27 YVPAIADMARDLNVRE-GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----HSLT-VL   99 (394)
T ss_pred             HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHH-HH
Confidence            3445677888888887 788999999999999999999999999999999998888777776665431     2222 22


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  538 (559)
                      ....++.+.......+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+..||+..|.+.+++.++..++.
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  179 (394)
T PRK11652        100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM  179 (394)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence            23333333332223344446677888888999999999999999999999999999998899999988877766655555


Q ss_pred             HhhccCCC
Q 008615          539 VRTVPETK  546 (559)
Q Consensus       539 ~~~~~~~~  546 (559)
                      .++.||++
T Consensus       180 ~~~~~~~~  187 (394)
T PRK11652        180 ARWMPETR  187 (394)
T ss_pred             HHhCCccC
Confidence            55566643

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.34  E-value=6.6e-12  Score=122.57  Aligned_cols=159  Identities=19%  Similarity=0.177  Sum_probs=124.4

Q ss_pred             hHHHhHH-HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          378 SVLYYAG-PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       378 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      ......| .+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++.+++.++..+.     .+.+ 
T Consensus        14 ~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~-   86 (352)
T PF07690_consen   14 IISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SNFW-   86 (352)
T ss_dssp             HHHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CCHH-
T ss_pred             HHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hhHH-
Confidence            3455556 5566777777 789999999999999999999999999999999999988888884444421     3334 


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|++.+++.++..+
T Consensus        87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            44444445555545556667788999999999999999999999999999999999999888999999999988888877


Q ss_pred             HHHhhcc
Q 008615          537 FIVRTVP  543 (559)
Q Consensus       537 ~~~~~~~  543 (559)
                      +...+.+
T Consensus       167 l~~~~~~  173 (352)
T PF07690_consen  167 LFILFLP  173 (352)
T ss_dssp             HHHCCC-
T ss_pred             hHhhhhh
Confidence            5444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.34  E-value=1.8e-11  Score=120.63  Aligned_cols=142  Identities=14%  Similarity=0.134  Sum_probs=120.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .|.+..+.+++.+.+.++..+++++.|++.||+|+|+++..+.++.+++.+...   +...++...++.|++.....|..
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p~~  306 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYPVA  306 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHH
Confidence            678889999999999999999999999999999999999988888877665443   22344557788888877788999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL  283 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  283 (559)
                      .+++.|..|+++++.+.+.+....++|.++||.++|++.+.. +|++.|++.+.+.++..+..+..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHhc
Confidence            999999998888888888888899999999999999998887 89999999888887666555543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.33  E-value=4.6e-11  Score=118.23  Aligned_cols=159  Identities=17%  Similarity=0.127  Sum_probs=120.7

Q ss_pred             HHHhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          379 VLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       379 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      +..+.+.++ ++.|.+. ...++......+...+..++.|+++||+|||+.+..+.++.+++++.+...     ++.+..
T Consensus        29 ~~~~~~~~~~~~~g~s~-~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~l  102 (400)
T PRK11646         29 VFPLISIRFVDQLGWAA-VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWLL  102 (400)
T ss_pred             HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence            444555554 5678877 889999999899999999999999999999999999999888887776542     223333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      + ...+..+.......+...+++.+.+|+++|++++|+.+....+|..++|.+.+.+. ..||++.|++.+++.++..++
T Consensus       103 ~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        103 W-LSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            3 33333333333344555577889999999999999999999999999999999998 679999898887777666655


Q ss_pred             HHhhccCC
Q 008615          538 IVRTVPET  545 (559)
Q Consensus       538 ~~~~~~~~  545 (559)
                      .....++.
T Consensus       181 ~~~~~~~~  188 (400)
T PRK11646        181 NAWLLPAY  188 (400)
T ss_pred             HHHhCCcc
Confidence            55555543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.33  E-value=4.9e-11  Score=118.35  Aligned_cols=158  Identities=16%  Similarity=0.091  Sum_probs=115.9

Q ss_pred             ChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhhhhHHHHHHHHHHHHHHHHhhcC
Q 008615          375 GQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKILGG  452 (559)
Q Consensus       375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (559)
                      .++.+..++|.++.+ .|++. .+++...........++.+++|+++||+ |||+.+.++.++..++.+++...    ..
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~-~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~   98 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDD-NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EI   98 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hc
Confidence            344577788888765 57776 7888888888889899999999999999 99999999998888887655421    11


Q ss_pred             chhHHHHHHHHHHHHhhcccccccceeecccCCcc--chhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHH
Q 008615          453 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI  530 (559)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~  530 (559)
                      ..........+.. .......+...++..|.+|++  .|.++.++.+...++|+.++|.+.+.+.+..||+..|.+.++.
T Consensus        99 ~~~~~~l~l~li~-iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig  177 (493)
T PRK15462         99 HPSFLYLSLAIIV-CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG  177 (493)
T ss_pred             chhHHHHHHHHHH-HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            1121222222221 222233344457889999875  6999999999999999999999999999999999999887665


Q ss_pred             HHHHHHHH
Q 008615          531 AFLAVLFI  538 (559)
Q Consensus       531 ~~~~~~~~  538 (559)
                      .+++.+..
T Consensus       178 m~l~li~~  185 (493)
T PRK15462        178 MIAGLVIF  185 (493)
T ss_pred             HHHHHHHH
Confidence            55544433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.32  E-value=5.6e-11  Score=119.87  Aligned_cols=157  Identities=17%  Similarity=0.079  Sum_probs=119.9

Q ss_pred             hChhhHHHhHHHHHHH---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHh
Q 008615          374 TGQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKI  449 (559)
Q Consensus       374 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (559)
                      .+++.+..+++.|+.+   +|.+. .+++.......++..++.+++|+++|| +|||+++..+.++.+++.+++...   
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~-~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---   99 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQ-EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---   99 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence            3444577788888875   57776 789999999999999999999999999 899999999999988887776641   


Q ss_pred             hcCchhHHHHHHHHHHHHhhcccccccceeecccCCccc---hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHH
Q 008615          450 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT---RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL  526 (559)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  526 (559)
                        .+.+.... ...+.+.......+...++..+.+|++.   |+++.++.+...++|.+++|.+.+.+.+..||+..|.+
T Consensus       100 --~~~~~~~~-~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~  176 (475)
T TIGR00924       100 --IYPDLIFY-GLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL  176 (475)
T ss_pred             --ccHhHHHH-HHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence              22222222 2223334444445555677888887654   88899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 008615          527 FAAIAFLAVLF  537 (559)
Q Consensus       527 ~~~~~~~~~~~  537 (559)
                      .++..+++.++
T Consensus       177 ~~~~~~~~~l~  187 (475)
T TIGR00924       177 AAVGMVIGLLT  187 (475)
T ss_pred             HHHHHHHHHHH
Confidence            77665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.3e-12  Score=121.18  Aligned_cols=187  Identities=14%  Similarity=0.075  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHH
Q 008615          360 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS  439 (559)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  439 (559)
                      ..++...+....+.+--+.+..-.+..-+.++.++ ...|++.....++..+.+++.|++.||++|++++.+|..+-.++
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~-s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISD-SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCc-hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            34444444444444444445544555555567777 78899999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 008615          440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG  519 (559)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  519 (559)
                      .+.-++.      ..++.+...-.+.+.+-..+.|+..++++|.+|.++|++++++.++...+|..+|-.+.+.+.+..+
T Consensus       112 v~~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  112 VFASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            8877753      3455566666667777777888888999999999999999999999999999888888888877777


Q ss_pred             -chhhHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 008615          520 -AENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI  553 (559)
Q Consensus       520 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (559)
                       |++.|.+.+++.++.+++..++.+|++++..+|.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~  220 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV  220 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence             9999999999999999988888888776544443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.31  E-value=8.9e-12  Score=123.68  Aligned_cols=138  Identities=27%  Similarity=0.216  Sum_probs=112.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH--HHHHh--chhHhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA--LTTAY--APGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~  213 (559)
                      +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  ++..+  .++.+.+++..++.|++.+..
T Consensus       250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  329 (394)
T TIGR00883       250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY  329 (394)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999998876555444433  22222  246677778889999999889


Q ss_pred             hhhhhhhhhccCCcccchhhhhH-HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHH
Q 008615          214 MHGAPLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL  275 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~  275 (559)
                      .+...+++.|.+|+++|++++++ ......+|..++|.+++.+.+..+.|++.++..+...++
T Consensus       330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l~  392 (394)
T TIGR00883       330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALI  392 (394)
T ss_pred             hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence            99999999999999999999998 456667899999999999988873498887776665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.31  E-value=4.3e-11  Score=116.45  Aligned_cols=161  Identities=14%  Similarity=0.045  Sum_probs=118.6

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      .+....|.+.++.+.+. .+.++......++..++.+..|++.||+|||+++.........+.....     . ..++..
T Consensus         9 ~~~~~lp~i~~~~~~s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-----~-~~~~~~   81 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL-----D-PFNYEW   81 (368)
T ss_pred             HHHhhHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-----H-hccHHH
Confidence            45567788888899887 7889999999999999999999999999988876554443333321111     0 112333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      +...-+..+....... .......|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|++.+++.++..++
T Consensus        82 l~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            3333333333332222 223455788999999999999999999999999999999999999999999988888887777


Q ss_pred             HHhhccCCC
Q 008615          538 IVRTVPETK  546 (559)
Q Consensus       538 ~~~~~~~~~  546 (559)
                      .++.+||..
T Consensus       161 ~~~~lp~~p  169 (368)
T TIGR00903       161 VLAALPALP  169 (368)
T ss_pred             HHHHcCCCC
Confidence            777777754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.31  E-value=1.1e-11  Score=122.26  Aligned_cols=161  Identities=16%  Similarity=0.127  Sum_probs=125.5

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      .+....|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.+++...     . ....
T Consensus        13 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~   85 (379)
T TIGR00881        13 NFALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-SLWV   85 (379)
T ss_pred             hhhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h-hHHH
Confidence            45666777888888887 789999999999999999999999999999999999988888887776643     2 2333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHH-hhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF-AFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~-i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      +....++.+.......+...+++.|.+|+++|+++.++.+....+|..+++. +.+.+.+..+|+..|++.+++.++..+
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL  165 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            3334444444444555666688999999999999999999999999999994 666666777898888888877776666


Q ss_pred             HHHhhccCC
Q 008615          537 FIVRTVPET  545 (559)
Q Consensus       537 ~~~~~~~~~  545 (559)
                      +.+++.++.
T Consensus       166 ~~~~~~~~~  174 (379)
T TIGR00881       166 ICFLLLRDS  174 (379)
T ss_pred             HHheeeCCC
Confidence            566555543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.30  E-value=5.5e-11  Score=119.29  Aligned_cols=155  Identities=13%  Similarity=0.082  Sum_probs=117.9

Q ss_pred             HHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHH
Q 008615          367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY  446 (559)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  446 (559)
                      +.++.............|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+.++.+++.++..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  103 (426)
T PRK12307         25 LGYVFDGFDFMLIFYIMYLIKADLGLTD-MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA  103 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334455666677778888887 788899999999999999999999999999999999998888887766643


Q ss_pred             HHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHH
Q 008615          447 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL  526 (559)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  526 (559)
                           . +...+...-++.+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..||++.|++
T Consensus       104 -----~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        104 -----S-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             -----h-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence                 1 2223333333444433344455567888999999999999999999999999999999988888899988876


Q ss_pred             HH
Q 008615          527 FA  528 (559)
Q Consensus       527 ~~  528 (559)
                      ..
T Consensus       178 ~~  179 (426)
T PRK12307        178 GL  179 (426)
T ss_pred             HH
Confidence            44

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.30  E-value=3.5e-11  Score=118.61  Aligned_cols=160  Identities=18%  Similarity=0.140  Sum_probs=125.4

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      .....|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+.++.+++...+...     .+.+. +
T Consensus        10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~   82 (377)
T PRK11102         10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQ-L   82 (377)
T ss_pred             HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHH-H
Confidence            4456677788888887 788999999999999999999999999999999999888888877776542     22222 2


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  538 (559)
                      ....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|++.+++.++..++.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            23333333333334445557888999999999999999999999999999999999999999999988888877776666


Q ss_pred             HhhccCC
Q 008615          539 VRTVPET  545 (559)
Q Consensus       539 ~~~~~~~  545 (559)
                      .+..+|+
T Consensus       163 ~~~~~~~  169 (377)
T PRK11102        163 FFFIPET  169 (377)
T ss_pred             HHhCCcc
Confidence            6666654

>PRK11043 putative transporter; Provisional

Probab=99.30  E-value=1.2e-10  Score=115.83  Aligned_cols=155  Identities=19%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             hHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008615          382 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL  461 (559)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (559)
                      ..|.+.++.+.++ .+.++......++..++.++.|+++||+|||+.+..+..+..++.++....     .+.+. +...
T Consensus        28 ~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~-l~~~  100 (401)
T PRK11043         28 AFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----ESAAQ-LLVL  100 (401)
T ss_pred             hHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----cCHHH-HHHH
Confidence            3455567788877 889999999999999999999999999999999998887777766655431     22222 2222


Q ss_pred             HHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhh
Q 008615          462 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      .++.+.......+....+..|.+|+++++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..++.+..
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            22322222222333346678889988899999998888899999999999999999999999988887777666555444


Q ss_pred             cc
Q 008615          542 VP  543 (559)
Q Consensus       542 ~~  543 (559)
                      .+
T Consensus       181 ~~  182 (401)
T PRK11043        181 KP  182 (401)
T ss_pred             CC
Confidence            33

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.29  E-value=6.6e-11  Score=121.26  Aligned_cols=158  Identities=12%  Similarity=0.020  Sum_probs=119.0

Q ss_pred             HHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHH
Q 008615          365 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS  444 (559)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  444 (559)
                      ..+..+.............|.+.++++.+. .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.+++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  103 (496)
T PRK03893         25 AWLGYLLDGFDFVLITLVLTEVQGEFGLTT-VQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG  103 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            333333333333455566788888888887 7788888889999999999999999999999999988888888777666


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhH
Q 008615          445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF  524 (559)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~  524 (559)
                      ..     . +...+....++.++......+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+..||++.|
T Consensus       104 ~~-----~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f  177 (496)
T PRK03893        104 FA-----P-GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF  177 (496)
T ss_pred             HH-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence            42     2 22233333344444434444555578899999999999999999999999999999999999999998888


Q ss_pred             HHHHH
Q 008615          525 LLFAA  529 (559)
Q Consensus       525 ~~~~~  529 (559)
                      ++.++
T Consensus       178 ~~~~~  182 (496)
T PRK03893        178 FIGIL  182 (496)
T ss_pred             HHHHH
Confidence            76433

>TIGR00897 2A0118 polyol permease family

Probab=99.29  E-value=6.8e-11  Score=117.37  Aligned_cols=163  Identities=10%  Similarity=0.031  Sum_probs=110.4

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      ....+.+.++++.+.+. .+.++......++..++.++.|++.||+|||+.+..+..+.+++.++..... . ....+..
T Consensus        31 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~  107 (402)
T TIGR00897        31 LEQGWLSPFLKALGLSP-QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG-L-GHANYPL  107 (402)
T ss_pred             hHHHhHHHHHHHhCCCH-HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh-c-cCccHHH
Confidence            34556777888888887 8899999999999999999999999999999999998888877755443211 1 1112222


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHH-HHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      +....+..+.......+.......+.+|+++|++++|+.+....+|. .++|.+.+.+.+..|+...++....+.++..+
T Consensus       108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  187 (402)
T TIGR00897       108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGV  187 (402)
T ss_pred             HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            22222222222222223333556788899999999999999988886 57888888888888865555544333333333


Q ss_pred             HHHhhcc
Q 008615          537 FIVRTVP  543 (559)
Q Consensus       537 ~~~~~~~  543 (559)
                      +.+++.+
T Consensus       188 ~~~~~~~  194 (402)
T TIGR00897       188 IALFSNK  194 (402)
T ss_pred             HHHhccC
Confidence            3334333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.27  E-value=1.4e-10  Score=116.97  Aligned_cols=163  Identities=17%  Similarity=0.108  Sum_probs=112.8

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      +....|.+.++ +.+. .+.++......++..++.++.|+++||+|||+++..+.++.+++.+++.+...  .......+
T Consensus        48 ~~~~~p~l~~~-g~s~-~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~  123 (452)
T PRK11273         48 FALAMPYLVEQ-GFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVM  123 (452)
T ss_pred             HHHhhHHHHHc-CCCH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc--ccccHHHH
Confidence            44566766655 7776 88999999999999999999999999999999999998888877776654311  11122222


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh-HHHHHhcCchhhHHHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF-SPLKELLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~-g~l~~~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      ....++.+.+.....+.....+.+.+|+++|++++|+.+....+|+.+.+++. ..+....||+..|++.+++.++..++
T Consensus       124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            23223333333333343335677889999999999999988888865444443 33333458888998888777776666


Q ss_pred             HHhhccCC
Q 008615          538 IVRTVPET  545 (559)
Q Consensus       538 ~~~~~~~~  545 (559)
                      .+++.+|+
T Consensus       204 ~~~~~~~~  211 (452)
T PRK11273        204 AFAMMRDT  211 (452)
T ss_pred             HHHHccCC
Confidence            66666654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=5.3e-11  Score=119.56  Aligned_cols=163  Identities=16%  Similarity=0.076  Sum_probs=116.6

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      +....|.+. +.|.+. .+.++......++..++.++.|++.||+|||+.+..+.++.+++.+++.....  .......+
T Consensus        46 ~~~~~p~~~-~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  121 (438)
T TIGR00712        46 FALAMPYLV-EQGFSK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW--ATSSIAIM  121 (438)
T ss_pred             HHhhhHHHH-HcCCCH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc--ccchHHHH
Confidence            444556555 467776 78999999999999999999999999999999998888777777666543210  01122222


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH-hcCchhhHHHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVLF  537 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~  537 (559)
                      ....+..+.......+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..||+..|++.+++.++..++
T Consensus       122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~  201 (438)
T TIGR00712       122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            2222233333333333344677789999999999999999999999999988876554 468999999888887777666


Q ss_pred             HHhhccCC
Q 008615          538 IVRTVPET  545 (559)
Q Consensus       538 ~~~~~~~~  545 (559)
                      .+++.+|.
T Consensus       202 ~~~~~~~~  209 (438)
T TIGR00712       202 AFAMMRDT  209 (438)
T ss_pred             HHHhccCC
Confidence            66666553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09952 shikimate transporter; Provisional

Probab=99.27  E-value=6.5e-11  Score=118.71  Aligned_cols=149  Identities=14%  Similarity=0.061  Sum_probs=113.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh---c-hhHhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---A-PGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~  213 (559)
                      +|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+.+..   . ++.+.+++..++.|++.+..
T Consensus       281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  360 (438)
T PRK09952        281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV  360 (438)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence            6777776666666667777889999999999999999998887766555443322   2 23444555667778888888


Q ss_pred             hhhhhhhhhccCCcccchhhhhHHHH-HHHHHHHHHHHhhhcccCCC-CcchHHHhhhHHHHHHHHHHhhccCCc
Q 008615          214 MHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPS  286 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~  286 (559)
                      .+...+++.|.+|.+.|+.+.++... +..+|..++|.+.+++.+.. ++|+..+...+++.++..+..+.++|+
T Consensus       361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            88889999999999999988888544 45589999999999987743 258988888888888777776666653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.26  E-value=5.3e-11  Score=121.52  Aligned_cols=149  Identities=17%  Similarity=0.047  Sum_probs=118.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh-----ch------hHhHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----AP------GLGVLLVGRLLY  206 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~------~~~~l~~~r~l~  206 (559)
                      +|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++     .+      +...+....++.
T Consensus       314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (481)
T TIGR00879       314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFI  393 (481)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Confidence            6788888899999999999999999999999999999999998888887777662     11      223333333333


Q ss_pred             HhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhh-ccCC
Q 008615          207 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP  285 (559)
Q Consensus       207 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e  285 (559)
                      +.......+....++.|.+|+++|++++++.....++|.++++.+.+.+.+.. +|++.|++.++++++..++.+ +.||
T Consensus       394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       394 AFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHHHHHheeccc
Confidence            33333344666777899999999999999999999999999999999988877 899999999988888766654 4565


Q ss_pred             ch
Q 008615          286 SP  287 (559)
Q Consensus       286 ~p  287 (559)
                      ++
T Consensus       473 ~~  474 (481)
T TIGR00879       473 TK  474 (481)
T ss_pred             CC
Confidence            43

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.26  E-value=1.4e-10  Score=114.37  Aligned_cols=140  Identities=18%  Similarity=0.068  Sum_probs=120.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++++.+++..++.|++.+...+..
T Consensus       235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  314 (382)
T PRK11128        235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA  314 (382)
T ss_pred             CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999988888889999999999999999999988998


Q ss_pred             hhhhhccCCcccchhhhhHHH-HHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh
Q 008615          218 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM  280 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  280 (559)
                      ..++.+. +++++++..++.. ...++|..+||.++|.+.+.. |+ ..|+..+++.++.+++.
T Consensus       315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence            8888886 5666788888876 556788899999999999887 76 46777776666554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.25  E-value=1.3e-10  Score=118.46  Aligned_cols=149  Identities=19%  Similarity=0.178  Sum_probs=112.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch--h-Hh-HHHHHHHHHHhhhhh-
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--G-LG-VLLVGRLLYGLGIGL-  212 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~-~~-~l~~~r~l~G~~~g~-  212 (559)
                      +|.+....++......+...++.++.|+++||+|||++++.+.++.+++.++++...  + .+ ....+.++.+++.+. 
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (479)
T PRK10077        301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  380 (479)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence            677777777777788888999999999999999999999999999988887776432  2 11 223334444444443 


Q ss_pred             hhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc------cCCCCcchHHHhhhHHHHHHHHHHhh-ccCC
Q 008615          213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ------INAVGGWRYMYGLSAPLALLMGIGMW-SLPP  285 (559)
Q Consensus       213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l------~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e  285 (559)
                      ..+....++.|.+|+++|++++++......+|.++++.+.+.+      .+.. +|++.|++.++++++..++.+ +.||
T Consensus       381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHHHHHHhcccc
Confidence            2367789999999999999999999999999998886555433      3455 889999998888777666554 4566


Q ss_pred             ch
Q 008615          286 SP  287 (559)
Q Consensus       286 ~p  287 (559)
                      +.
T Consensus       460 ~~  461 (479)
T PRK10077        460 TK  461 (479)
T ss_pred             CC
Confidence            43

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.25  E-value=2.8e-10  Score=111.71  Aligned_cols=161  Identities=21%  Similarity=0.167  Sum_probs=113.6

Q ss_pred             hhHHHhHHH-HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchh
Q 008615          377 PSVLYYAGP-ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL  455 (559)
Q Consensus       377 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (559)
                      .....+.|. +.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++..++.+++....    .+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~~~~   92 (366)
T TIGR00886        18 FAFSPLAVQMIKDDLGLST-AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----QSYS   92 (366)
T ss_pred             HHhHHhhhHHHHHHhCCCH-HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----hhHH
Confidence            346667775 557788887 7899999999999999999999999999999999999888888877766421    0222


Q ss_pred             HHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh----------cCchhhH-
Q 008615          456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL----------LGAENIF-  524 (559)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~----------~g~~~~~-  524 (559)
                       .+....+..+....... ....++.|.+|+++|+.+.++......+|..+++.+.+.+...          .+|++.+ 
T Consensus        93 -~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~  170 (366)
T TIGR00886        93 -VLLLLRLFIGIAGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV  170 (366)
T ss_pred             -HHHHHHHHHHHhchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence             22223333333333333 3457788999999999999999988888888888877766653          3678887 


Q ss_pred             HHHHHHHHHHHHHHHhhccC
Q 008615          525 LLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~  544 (559)
                      +..+++..+..++.+...++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       171 IVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            44344444444444444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.25  E-value=9.6e-11  Score=115.82  Aligned_cols=148  Identities=21%  Similarity=0.222  Sum_probs=119.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch-hHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      .|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+  .-++.|++.+...+.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~  312 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL  312 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence            688999999999999999999999999999999999999998888777766554333 22222  234668888888887


Q ss_pred             hhhhhhccCC-cccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh-hccCCch
Q 008615          217 APLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSP  287 (559)
Q Consensus       217 ~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p  287 (559)
                      ......+.++ ++++++..++.+....++..++|.+.+++.+..++|...|++.++.+++..+.. .+.||++
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            7777777775 578999999999999999999999999999887568888998888877766554 4566654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.24  E-value=9.2e-11  Score=118.97  Aligned_cols=151  Identities=13%  Similarity=-0.018  Sum_probs=118.4

Q ss_pred             HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHh
Q 008615          389 SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCY  468 (559)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (559)
                      +.+.+. .+.+.+...+.++.+++.++.|++.||+|+|+.+..+.++.+++.++.....    ......++..-++.+..
T Consensus        70 ~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSG-ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCH-HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHh
Confidence            345555 6788999999999999999999999999999999988887777766554321    12233344445555666


Q ss_pred             hcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          469 QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       469 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      .....+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ||+..|++.+++.++..++.+.+.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            66666777788999999999999999999999999999999999999984 99999999888777666655555543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.24  E-value=1.1e-10  Score=115.89  Aligned_cols=141  Identities=14%  Similarity=0.190  Sum_probs=122.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhh
Q 008615          139 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP  218 (559)
Q Consensus       139 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~  218 (559)
                      +.+....|++.++..+...++.++.|++.||+|||+.+.++.++.+++.++..++++.+.+++.++++|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999999888878889999999999999999877766777


Q ss_pred             hhhhccCCcccchhhhhH-HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh
Q 008615          219 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM  280 (559)
Q Consensus       219 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  280 (559)
                      .++.+..+++.++...+. .+....+|..+++.++|++.+.. ||+..|++.+++.++..+..
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence            778888888877777666 67889999999999999999987 99999999888887765544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.24  E-value=7.3e-11  Score=118.73  Aligned_cols=142  Identities=23%  Similarity=0.351  Sum_probs=131.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|.++...|++.+++.+|..++.++.+++.+|+++++++..+.++++++.+..+++++.+..++..++.|++.....+..
T Consensus       249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~  328 (524)
T PF05977_consen  249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSL  328 (524)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM  280 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  280 (559)
                      .+.+.+..|++.|||+++++.+....+..+|..+.|.+.+.. |-+..+.+.++..++..++.
T Consensus       329 ~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  329 NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888 89999888776655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.22  E-value=3.7e-10  Score=111.55  Aligned_cols=174  Identities=14%  Similarity=0.093  Sum_probs=122.0

Q ss_pred             CchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHH
Q 008615          356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG  435 (559)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  435 (559)
                      |+++.++++.++..+...    ......+.+..+.+.+. ...++....+.+...+..++.|+++||+|||+++..+.++
T Consensus         3 ~~f~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          3 KGFYAIMAAQFFSALADN----ALLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             CcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            445555555544444322    23344455567777766 6788999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 008615          436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK  515 (559)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  515 (559)
                      .+++.+.+....      ..   ....+..+.......|...+++.|.+|+++|++++|+.+....++..++|.+.|.+.
T Consensus        78 ~~~~~~~~~~~~------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         78 KLLGCLLMLFGI------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877666544321      11   122233455555566777789999999999999999999999999999999999998


Q ss_pred             HhcCchhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          516 ELLGAENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       516 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      +.. +...+.+.+.+.+++. +..+.+||.
T Consensus       149 ~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~  176 (393)
T PRK11195        149 DPH-AEAALAVCALIYLLAA-LFNLFIPRL  176 (393)
T ss_pred             HHH-HHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            864 4445544444433333 334455543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.22  E-value=3.6e-10  Score=114.10  Aligned_cols=154  Identities=14%  Similarity=0.054  Sum_probs=112.0

Q ss_pred             hhhHHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhhcCc
Q 008615          376 QPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGF  453 (559)
Q Consensus       376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (559)
                      ++.+..+++.|++ ++|.+. .++......+.....+..+++|+++|| +|||+++..+.++..++.+.+.+.     ..
T Consensus        30 ~y~~~~~l~~yl~~~lg~~~-~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----~~  103 (489)
T PRK10207         30 YYGVQGILAVFFVKQLGFSQ-EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----LL  103 (489)
T ss_pred             HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----cc
Confidence            3445555566654 477776 667777777777777778899999999 999999999999999988777642     11


Q ss_pred             hhHHHHHHHHHHHHhhcccccccceeecccCCcc--chhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHH
Q 008615          454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA  531 (559)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~  531 (559)
                      ....+.......+.......|...+++.|.+|++  +|+.++++.....++|.+++|.+.|.+.++.||++.|++.++..
T Consensus       104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~  183 (489)
T PRK10207        104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL  183 (489)
T ss_pred             chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            1222222233334444455566668899999877  45778999999999999999999999999999999998865443


Q ss_pred             HHHH
Q 008615          532 FLAV  535 (559)
Q Consensus       532 ~~~~  535 (559)
                      +++.
T Consensus       184 ~~~~  187 (489)
T PRK10207        184 IIAL  187 (489)
T ss_pred             HHHH
Confidence            3333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=6.2e-09  Score=100.85  Aligned_cols=316  Identities=15%  Similarity=0.121  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcc
Q 008615          149 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ  228 (559)
Q Consensus       149 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  228 (559)
                      .++-...+.+++++.+.+.|+.|.|+.++++...+.+..+..-+- |-+-++++-.+.|+|.+..+..-..++.+..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            667778888999999999999999999999999998877766554 4566888999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhcccCCCC-------cch-HHH----------hhhHHHHHH---HHHHhhccCCch
Q 008615          229 IRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GWR-YMY----------GLSAPLALL---MGIGMWSLPPSP  287 (559)
Q Consensus       229 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-------~wr-~~f----------~~~~~~~~~---~~~~~~~~~e~p  287 (559)
                      .+.+..++..+....+.++|..+...+.....       +-+ +.+          .+.+++..+   ..+...+.|.. 
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~-  213 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK-  213 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-
Confidence            99999999999999999999877555432110       111 111          111111111   11111222221 


Q ss_pred             HHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHH
Q 008615          288 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL  367 (559)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (559)
                      .....               .+.. +             .             ...+.-....+++++++...+......
T Consensus       214 ~~~~~---------------~~~~-~-------------~-------------~~~~~l~~~~~l~~~~~ml~L~~~f~~  251 (461)
T KOG3098|consen  214 DVVNC---------------KSSS-E-------------T-------------SFSELLKLTFKLLKTPKMLLLFPFFFY  251 (461)
T ss_pred             chhhh---------------hhhc-c-------------c-------------cHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence            00000               0000 0             0             000000112334445443333332222


Q ss_pred             HHHHHhhChhhHHHhHHHHH---HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh---cCCcchhhhhHHHHHHHHH
Q 008615          368 VLFQQITGQPSVLYYAGPIL---QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD---LGRRPLLIGGVCGIALSLL  441 (559)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~  441 (559)
                      ..+....    +....|.-+   ...+.......++.....+++.+++.+..+.+.+|   +|+++.+.++..+..+.++
T Consensus       252 tG~~~Sf----~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~  327 (461)
T KOG3098|consen  252 TGLETSF----WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFL  327 (461)
T ss_pred             HHHHHHH----HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHH
Confidence            2221111    111111111   13344443566777777888888888888888765   6778888888777777766


Q ss_pred             HHHHHHHhhcC------------chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008615          442 LLSAYYKILGG------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF  509 (559)
Q Consensus       442 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~  509 (559)
                      +.-...+...+            ........+.+..|..-.++....+.++..++| +.|..+.++.-+-..++..++-.
T Consensus       328 li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  328 LIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             HHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhh
Confidence            66554332110            113334444455556666666677788888885 77888888888777777666555


Q ss_pred             hhHH
Q 008615          510 AFSP  513 (559)
Q Consensus       510 i~g~  513 (559)
                      ....
T Consensus       407 ~~~~  410 (461)
T KOG3098|consen  407 FSPY  410 (461)
T ss_pred             hhhh
Confidence            4443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.20  E-value=6e-10  Score=109.40  Aligned_cols=164  Identities=11%  Similarity=0.068  Sum_probs=110.9

Q ss_pred             HHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          379 VLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       379 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      +....+.+-+ +++++. .+.+++.....+...++++..|++.||+|.|+++.++.++..+..+.+.+..+.. .+++..
T Consensus        53 ~~~l~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-~~s~~~  130 (462)
T PRK15034         53 FSAVTVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-NTPFGI  130 (462)
T ss_pred             HHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-CCCHHH
Confidence            3333444444 688887 7889899989999999999999999999999999999888887777666431111 123333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH-----Hhc-------------C
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-----ELL-------------G  519 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~-----~~~-------------g  519 (559)
                      +....++.+..+..+ +.....+.+.+|+++||++.|+....+++|..+.+.+...+.     +..             +
T Consensus       131 lli~r~l~Gigg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~  209 (462)
T PRK15034        131 FIVIALLCGFAGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS  209 (462)
T ss_pred             HHHHHHHHHHHHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence            444444444433333 445577889999999999999997777777776666555433     222             2


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          520 AENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      ++.+.++...+.++..++.+++.++.
T Consensus       210 ~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        210 LANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            44555666666666666666665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.19  E-value=1.5e-09  Score=110.07  Aligned_cols=147  Identities=17%  Similarity=0.185  Sum_probs=117.7

Q ss_pred             cccchhHHHHHHH-HHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH---Hhc-hhHhHHHHHHHHHHhhhhh
Q 008615          138 FNLSAVQLGLVVS-GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-PGLGVLLVGRLLYGLGIGL  212 (559)
Q Consensus       138 ~~~s~~~~g~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~l~G~~~g~  212 (559)
                      +|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+.-+++.++.|.
T Consensus       253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~  332 (491)
T PRK11010        253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM  332 (491)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            7899999999974 6678999999999999999999998877666555544332   333 3555555566776666666


Q ss_pred             hhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC
Q 008615          213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP  285 (559)
Q Consensus       213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  285 (559)
                      ..+...++..+..+++.+++..++.+...++|..+++.+.|.+.+.. ||+..|.+.++++++..++.+++++
T Consensus       333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66777888889999999999999999999999999988999998887 9999999999998887776665543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.19  E-value=1.1e-09  Score=105.09  Aligned_cols=178  Identities=14%  Similarity=0.125  Sum_probs=127.3

Q ss_pred             hhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhh
Q 008615          351 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI  430 (559)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  430 (559)
                      .++.++....+.+...++.+.    ...+.+++--++++.+..+ ..-|......-.+.++.-++.+++.+|+|+-+++.
T Consensus       366 ~~~~s~~~llff~~av~mG~g----~~lv~tFLfWHled~~~~~-~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~  440 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAG----VGLVFTFLFWHLEDLGGIK-TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY  440 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHH----HHHHHHHHHHHHhhcCCcc-eeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence            455665544433333332222    2234445555678877665 56677777777888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHH-HHHHHHHHHH
Q 008615          431 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTF  509 (559)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~  509 (559)
                      .++.+..+=++.+...     .++|.++.+=++-....+..+..+ .+|+....|++.++++.++.... ..+|-.+|++
T Consensus       441 lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl  514 (618)
T KOG3762|consen  441 LGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL  514 (618)
T ss_pred             ehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence            9988888777666642     456655555444444444444444 48999999999999999998865 6678899999


Q ss_pred             hhHHHHHhcCchhhHHHHHHHHHHHHHHHH
Q 008615          510 AFSPLKELLGAENIFLLFAAIAFLAVLFIV  539 (559)
Q Consensus       510 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  539 (559)
                      |.|.+.+.+|....|.++++.+++.+++..
T Consensus       515 IGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  515 IGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            999999999988889888877776665443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.18  E-value=4.5e-10  Score=111.86  Aligned_cols=148  Identities=20%  Similarity=0.193  Sum_probs=134.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchH--HHHHHHHHHHHHHHHHHHh--------chhHhHHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK--RELIIAAVLYALGALTTAY--------APGLGVLLVGRLLYG  207 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G  207 (559)
                      +|++..+...+.-+..+...+|++++|++.||+|.|  ++++++++++.+..+...+        .++-+.+.+.-++.|
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G  391 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG  391 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999  8998888888666655555        678889999999999


Q ss_pred             hhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC
Q 008615          208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP  285 (559)
Q Consensus       208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  285 (559)
                      +..|..++...++.+++.|+++.+..+|++....-....+||++.+.+.+..++-|+.++...++.++.+++.++++.
T Consensus       392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999888766999999988888888877777654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=8.5e-10  Score=103.30  Aligned_cols=161  Identities=14%  Similarity=0.062  Sum_probs=126.4

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      .+....+.+-++.++++ .+.+++.....+.+.+.++..|.+.||+|.|++...+.++..+-++.+.+...   ......
T Consensus        32 l~s~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~---~~~~~~  107 (417)
T COG2223          32 LFSPLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---YPSTWQ  107 (417)
T ss_pred             HHHHHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc---CCchHH
Confidence            34444455557888888 89999999999999999999999999999999999999998888887776533   222233


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC---chhhHHHHHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG---AENIFLLFAAIAFLA  534 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g---~~~~~~~~~~~~~~~  534 (559)
                      +..+.++.+..+..+ .+...++++.||++++|.++|+.. .+++|..+...+...+....|   |+.+..+.....++.
T Consensus       108 ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~  185 (417)
T COG2223         108 LLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA  185 (417)
T ss_pred             HHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            344444444444333 345588999999999999999999 999999999999999999999   888888888888887


Q ss_pred             HHHHHhhccC
Q 008615          535 VLFIVRTVPE  544 (559)
Q Consensus       535 ~~~~~~~~~~  544 (559)
                      .++.++...+
T Consensus       186 ~v~~~~~~~d  195 (417)
T COG2223         186 AVLAWLGMND  195 (417)
T ss_pred             HHHHHHHhCC
Confidence            7777776644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.18  E-value=8.1e-10  Score=112.16  Aligned_cols=154  Identities=14%  Similarity=0.059  Sum_probs=106.4

Q ss_pred             hhhHHHhHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhhcCc
Q 008615          376 QPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGF  453 (559)
Q Consensus       376 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (559)
                      ++.+..+.+.++ +++|.+. .+++..............+++|+++|| +|||+.+..+.++.+++..++.+.    ...
T Consensus        37 ~y~~~~~l~~yl~~~lg~s~-~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----~~~  111 (500)
T PRK09584         37 YYGLQGIMAVYLVKQLGMSE-ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----GHD  111 (500)
T ss_pred             HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----ccc
Confidence            345666777776 5577776 555666655555555556789999999 599999999988888876666532    111


Q ss_pred             hhHHHHHHHHHHHHhhcccccccceeecccCCccc--hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHH
Q 008615          454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA  531 (559)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~  531 (559)
                      ... +.......+.......+...++..|.+|++.  +..+.++.+...++|..++|.+.|.+.+..||++.|.+.++..
T Consensus       112 ~~~-l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~  190 (500)
T PRK09584        112 AGI-VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM  190 (500)
T ss_pred             HHH-HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            222 2222223333333344555578889887543  4567888899999999999999999999999999998877554


Q ss_pred             HHHH
Q 008615          532 FLAV  535 (559)
Q Consensus       532 ~~~~  535 (559)
                      +++.
T Consensus       191 ~i~~  194 (500)
T PRK09584        191 LITV  194 (500)
T ss_pred             HHHH
Confidence            4444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.18  E-value=8.5e-11  Score=97.72  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeeccc
Q 008615          404 VIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI  483 (559)
Q Consensus       404 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (559)
                      ...++.+++.++.+++.||++||+.+..+..+..++.+.+...     .+.+.... ..+..+.......+....+..|.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLII-ARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence            4567788899999999999999999988877777766655431     22232222 23333333333445566788999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          484 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       484 ~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      +|++.|+++.++.+....++..+++.+.+.+.+..+++..+.+.+.+.+++.++.++..+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999998888888888888777777766665554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.17  E-value=1.4e-09  Score=109.64  Aligned_cols=121  Identities=22%  Similarity=0.308  Sum_probs=104.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc-hhHhHHHHHHHHHHhhhhhhhhhhhh
Q 008615          141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVGRLLYGLGIGLAMHGAPL  219 (559)
Q Consensus       141 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~  219 (559)
                      +..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888899999999999999999999999999998888887777665 46677778889999999999999999


Q ss_pred             hhhccCC-------cccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 008615          220 YIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW  262 (559)
Q Consensus       220 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~w  262 (559)
                      +++|..+       ++++|.+.++.+....+|..+++.+.+.+.+.. ||
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~-G~  383 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII-GY  383 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            9998865       456799999999999999999999999887654 44

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.16  E-value=1.4e-09  Score=107.68  Aligned_cols=157  Identities=15%  Similarity=0.021  Sum_probs=115.8

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      ......|.+.++.+.+. .+.+++.....++..++.+..|++.||+|||+.+..+.++.+++.+++.....   ..++..
T Consensus        21 ~~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---~~~~~~   96 (410)
T TIGR00885        21 ITNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---IMNYTL   96 (410)
T ss_pred             hHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---hccHHH
Confidence            34466788888888887 88999999999999999999999999999999999999998888777543211   122333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh--------------------
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL--------------------  517 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~--------------------  517 (559)
                      +....+..+.......+....++.+..|++++++..++.+....+|..++|.+.+.+...                    
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  176 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSA  176 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHH
Confidence            333333333333333334446777888989999999999999999999999998877532                    


Q ss_pred             ------cCchhhHHHHHHHHHHHHHHH
Q 008615          518 ------LGAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       518 ------~g~~~~~~~~~~~~~~~~~~~  538 (559)
                            .+|+.+|++.+++.++..++.
T Consensus       177 ~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       177 IKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  357788888777666554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.15  E-value=1.7e-09  Score=110.69  Aligned_cols=149  Identities=14%  Similarity=-0.006  Sum_probs=104.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccc
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI  475 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (559)
                      ...+++.....++.+++.++.|++.||+|||+.+..+.++..++.++...............+...-+..+.......+.
T Consensus        56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  135 (502)
T TIGR00887        56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL  135 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            45678889999999999999999999999999999888888877666554210000001223334444444444445566


Q ss_pred             cceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH-----------------------hcCchhhHHHHHHHHH
Q 008615          476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-----------------------LLGAENIFLLFAAIAF  532 (559)
Q Consensus       476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~-----------------------~~g~~~~~~~~~~~~~  532 (559)
                      ...++.|.+|++.|++++++.+....+|..+++.+...+..                       ..+|+..+.+.++..+
T Consensus       136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~  215 (502)
T TIGR00887       136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL  215 (502)
T ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence            67999999999999999999999999999888887765532                       1367777765544444


Q ss_pred             HHHHHHHhhccCC
Q 008615          533 LAVLFIVRTVPET  545 (559)
Q Consensus       533 ~~~~~~~~~~~~~  545 (559)
                      + .++..+++||+
T Consensus       216 i-~~~~~~~lpES  227 (502)
T TIGR00887       216 L-ALYFRLTIPET  227 (502)
T ss_pred             H-HHHHHHhCCCC
Confidence            3 33344567775

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=7.2e-10  Score=111.05  Aligned_cols=147  Identities=18%  Similarity=0.238  Sum_probs=137.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--hHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG--RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      .+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..+++++.+++.+.+.++++++.++..-.+.|++.|....
T Consensus       328 ~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~  407 (509)
T KOG2504|consen  328 LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSS  407 (509)
T ss_pred             cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999988  56677889999999999999999999999999999999999988


Q ss_pred             hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccC
Q 008615          216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP  284 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  284 (559)
                      ....++.|+.+.++-..+.|+...+.+++.++||++++++.+..++|...|+..++..++..+.++..+
T Consensus       408 l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  408 LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            888899999999999999999999999999999999999998886799999999999998887777665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.12  E-value=9.5e-10  Score=108.84  Aligned_cols=142  Identities=18%  Similarity=0.058  Sum_probs=111.8

Q ss_pred             cccchhHHHHHHHHHH-HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh------chhHhHHHHHHHHHHhhh
Q 008615          138 FNLSAVQLGLVVSGSL-YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------APGLGVLLVGRLLYGLGI  210 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~-l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~r~l~G~~~  210 (559)
                      .|.+..++|++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++...++...++.+++.
T Consensus       238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (390)
T TIGR02718       238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT  317 (390)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence            7899999999988876 466777899999999999999998877766443332221      123344455566677777


Q ss_pred             hhhhhhhhhhhhccCCc-ccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHh
Q 008615          211 GLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM  280 (559)
Q Consensus       211 g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  280 (559)
                      +...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+.. ||+..|++.+++.++..++.
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~~  387 (390)
T TIGR02718       318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILLA  387 (390)
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHh
Confidence            87778888887777776 78999999999999999999999999998877 89999998887777655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.12  E-value=1.2e-09  Score=112.14  Aligned_cols=135  Identities=22%  Similarity=0.167  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhH--hHHHHHHHHHHhhhhhhhhhhhhhhhccCCc
Q 008615          150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMHGAPLYIAETCPS  227 (559)
Q Consensus       150 s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  227 (559)
                      .+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+..++....+..|.+|.
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            34456777888999999999999999999999999988888776644  4555566777777888888899999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCch
Q 008615          228 QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP  287 (559)
Q Consensus       228 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p  287 (559)
                      +.|+.++|+......+|.+++|.+.+ +. .. ++..++++.++..++..++.+++||+.
T Consensus       442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       442 VVRNLGVGVCSTMARVGSIISPFLVY-LG-EK-WLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HH-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            99999999999999999999999988 33 33 677888888888888877788888864

>TIGR01272 gluP glucose/galactose transporter

Probab=99.11  E-value=2.4e-09  Score=101.48  Aligned_cols=132  Identities=14%  Similarity=0.137  Sum_probs=108.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|+++.+.++..+.+..++.++.++.+++.||+|+|+++.++.++..++.++....++... ..+-++.|++.+..+|..
T Consensus       173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~  251 (310)
T TIGR01272       173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI  251 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999998888888887766666554433 345668899999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHH
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLA  273 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~  273 (559)
                      .+...+.++++ .+.+.++. ....+|.+++|++.|.+.+.. |.+..|++..+..
T Consensus       252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~~  304 (310)
T TIGR01272       252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPCY  304 (310)
T ss_pred             HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHHH
Confidence            99998888754 45666665 566789999999999988877 8888887554443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.10  E-value=2e-09  Score=121.61  Aligned_cols=192  Identities=14%  Similarity=0.009  Sum_probs=121.9

Q ss_pred             hhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcch
Q 008615          350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL  428 (559)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  428 (559)
                      +.+++++.++++++..++..+........+..+..+.+.. .+.+.....++......+..++..+++|+++||++||++
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~   84 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL   84 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence            3467777777777666555554322222222222222222 222222356777778888899999999999999999997


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHH
Q 008615          429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT  508 (559)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~  508 (559)
                      +.....+..+...+......   ...+..+++..++.+.....+.|...+++.+.+|+++++.++|+.++...+|.+++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp  161 (1140)
T PRK06814         85 AKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT  161 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence            64422222222111111111   123344445555556666666778889999999999999999999999999999999


Q ss_pred             HhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          509 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       509 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      .+.|.+.+..||...|+..+++.++ .+++.+.+++.
T Consensus       162 ~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  197 (1140)
T PRK06814        162 IIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT  197 (1140)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence            9999999998988777443333333 33344444443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.09  E-value=6.2e-10  Score=104.23  Aligned_cols=149  Identities=23%  Similarity=0.214  Sum_probs=136.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      +|++..++.++.-.-.+..+++++++|+|.||+|.|+++.++++++.+.++..-+...-..+.++-.+.|...|..+..+
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S  362 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS  362 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence            89999999999999999999999999999999999999999999999988888887777777888899999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCc
Q 008615          218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS  286 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  286 (559)
                      .++..+..|+++-++.+|++....-.+..+||.+-+.+.+..++-|..+....++.++.+++.+.+|+.
T Consensus       363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            999999999999999999999999999999999999988877678888888888777777777777653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.09  E-value=1.5e-09  Score=108.94  Aligned_cols=154  Identities=18%  Similarity=0.112  Sum_probs=108.5

Q ss_pred             HHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 008615          380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVS  459 (559)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (559)
                      ..-++.+..+.|.++  ...++.....++..++.++.|+++|.+|||+.++.+.++..++.++.+-.     .+....+.
T Consensus        64 a~~l~~I~~diG~~~--~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-----~~~~~~ia  136 (599)
T PF06609_consen   64 ASILPYINADIGGSD--NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-----QNMNTFIA  136 (599)
T ss_pred             HHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-----CcHHHHHH
Confidence            344566777787764  67778888889999999999999999999999999999999998887731     22233333


Q ss_pred             HHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHH
Q 008615          460 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV  539 (559)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  539 (559)
                      ...+.+.+.  +...+....++|..|.+.|..+.++..........+++.+...+..+.+|+|.|++.+++..+++++.+
T Consensus       137 g~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  137 GMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            333332222  223334456899999999988877766555444455666666665566899999988887777766554


Q ss_pred             hhc
Q 008615          540 RTV  542 (559)
Q Consensus       540 ~~~  542 (559)
                      +++
T Consensus       215 ~fY  217 (599)
T PF06609_consen  215 FFY  217 (599)
T ss_pred             HHh
Confidence            443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.08  E-value=4.6e-09  Score=105.32  Aligned_cols=158  Identities=15%  Similarity=0.076  Sum_probs=103.5

Q ss_pred             hhhHHHhHHHHHHHcC---CCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHh
Q 008615          376 QPSVLYYAGPILQSAG---FSAAAD---ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI  449 (559)
Q Consensus       376 ~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (559)
                      ...+.+..|.+.++.+   .+. .+   .+.......++..++.++.|+++||+|||+.+..+.++.+++.++.++....
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  116 (432)
T PRK10406         38 FYVYSFCSLYFAHIFFPSGNTT-TQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGY  116 (432)
T ss_pred             HHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            3345555666666654   222 22   2333444456666999999999999999999999999988888776642100


Q ss_pred             hc--CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH--------HhcC
Q 008615          450 LG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK--------ELLG  519 (559)
Q Consensus       450 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~--------~~~g  519 (559)
                      ..  ......+...-+..+.......+...+++.|.+|+++|+...++.......|..+++.+...+.        ..+|
T Consensus       117 ~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  196 (432)
T PRK10406        117 ETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG  196 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence            00  0011223334444455545555667789999999999999999888777777777766544433        2578


Q ss_pred             chhhHHHHHHHHHHH
Q 008615          520 AENIFLLFAAIAFLA  534 (559)
Q Consensus       520 ~~~~~~~~~~~~~~~  534 (559)
                      |+..|++.++..++.
T Consensus       197 Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        197 WRIPFALGAVLAVVA  211 (432)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999998766655544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.08  E-value=1.5e-09  Score=112.75  Aligned_cols=177  Identities=14%  Similarity=-0.003  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHH
Q 008615          363 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL  442 (559)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  442 (559)
                      +...+..+........+..-++.+-++++.++ .+.|++...+.++.+++.++.+++.||.+||+.+.++.++.+++.++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss-~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLST-SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCC-CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            33333444443333445556677777888887 78999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhc---------------------------------------------CchhHHHHHHHHHHHHhhcccccccc
Q 008615          443 LSAYYKILG---------------------------------------------GFPLVAVSALLLYVGCYQISFGPISW  477 (559)
Q Consensus       443 ~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (559)
                      +++-.....                                             ...+..+++.-++.|.+.....++..
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~  194 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI  194 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence            765321000                                             00233344455556666666667778


Q ss_pred             eeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc---------------------C-chhhHHHHHHHHHHHH
Q 008615          478 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL---------------------G-AENIFLLFAAIAFLAV  535 (559)
Q Consensus       478 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~---------------------g-~~~~~~~~~~~~~~~~  535 (559)
                      +++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.+                     | |+..|++.+++.++.+
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887643                     1 4455777776666655


Q ss_pred             HHHHh
Q 008615          536 LFIVR  540 (559)
Q Consensus       536 ~~~~~  540 (559)
                      +..++
T Consensus       275 v~l~~  279 (633)
T TIGR00805       275 IPFFF  279 (633)
T ss_pred             HHHHh
Confidence            54443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.08  E-value=2.9e-09  Score=104.00  Aligned_cols=163  Identities=17%  Similarity=0.069  Sum_probs=112.7

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcchh-hhhHHHHHHHHHHHHHHHHhhc
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRPLL-IGGVCGIALSLLLLSAYYKILG  451 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  451 (559)
                      .+....|.+.++.|.+. .+.++.... .+...+ .++.|++.||+     |||+.+ +.+.++.+++...+.+.   .+
T Consensus         6 ~~~~~~~~~~~~~g~s~-~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~~   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSL-KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---VP   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCH-HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---Cc
Confidence            34556788889999988 677777544 344444 88999999997     788864 45555555554444432   11


Q ss_pred             CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC--------chhh
Q 008615          452 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--------AENI  523 (559)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--------~~~~  523 (559)
                      ......+....+..+.......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..|        |+..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence            12222232332333333334445556888999999999999999999999999999999999988888        9999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCC
Q 008615          524 FLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                      |++.+++.++..++.++..+|.+
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCC
Confidence            98888877776655555556643

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=3.1e-10  Score=104.74  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=125.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccc
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI  475 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (559)
                      .+.|+++....+..++.+++.|.+.||+|+|-.+++|++.+..+.+++++      .+.+..+.+.-...+....+....
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf------g~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF------GNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH------cchhHHHHHHHHHhhhhHHHHHhh
Confidence            68999999999999999999999999999999999999999999998886      344445555556666666666666


Q ss_pred             cceeecccCCccc-hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCC
Q 008615          476 SWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKG  547 (559)
Q Consensus       476 ~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (559)
                      ..+++++.+|.+. |++++|+...+..+|-.++|++.|.+++..|+..+|++++.++++-..+.++.++.++.
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            6788999999766 69999999999999999999999999999999999999999999998877776655443

>PTZ00207 hypothetical protein; Provisional

Probab=99.06  E-value=7.1e-09  Score=104.90  Aligned_cols=165  Identities=14%  Similarity=0.102  Sum_probs=109.2

Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      +.+..+.+.+.+++|++. .+.+.+...... .....++.|++.||+|+|+++.++.++..++.++.++.....-..+.+
T Consensus        44 y~fsv~s~~L~~~lgls~-~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~  121 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQ-RDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV  121 (591)
T ss_pred             HHHHHHHHHHHHHhCcCH-HHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence            456677888888888887 566666655333 334566789999999999999999999999988877642110012233


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+.+..++.+.......+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++..+
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            33333333333333232333355677787 789999999999999999876666555544 3566777777777777666


Q ss_pred             HHHhhccCC
Q 008615          537 FIVRTVPET  545 (559)
Q Consensus       537 ~~~~~~~~~  545 (559)
                      +.+.+++..
T Consensus       200 l~~~~vr~p  208 (591)
T PTZ00207        200 LAIVFMRLP  208 (591)
T ss_pred             HHHhheeCC
Confidence            666655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.05  E-value=6.1e-09  Score=104.54  Aligned_cols=163  Identities=17%  Similarity=0.014  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHH-----HHHHHHHHHHHHHHhhhcCCcchhhhhHHHH
Q 008615          362 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI-----GVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI  436 (559)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  436 (559)
                      .....+..+........+....|.+.++++.++.....+.....     .+...++.++.|++.||+|||+.+..+..+.
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~   96 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM   96 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence            33344444444444556778888888888877633333332221     2223467899999999999999999999888


Q ss_pred             HHHHHHHHHHHHhhcCchh------HHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 008615          437 ALSLLLLSAYYKILGGFPL------VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA  510 (559)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i  510 (559)
                      .++.++..+..    +...      ..+...-+..+.......+....++.|.+|+++|++++++.....++|..+++.+
T Consensus        97 ~~~~~l~~~~~----~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         97 ASGTLLIAFVP----GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            88877776421    1110      0122222333333333344445789999999999999999998888887777776


Q ss_pred             hHHH--------HHhcCchhhHHHHH
Q 008615          511 FSPL--------KELLGAENIFLLFA  528 (559)
Q Consensus       511 ~g~l--------~~~~g~~~~~~~~~  528 (559)
                      .+.+        .+..||+..|++..
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHH
Confidence            6655        34678888887643

>PRK10133 L-fucose transporter; Provisional

Probab=99.05  E-value=9.6e-09  Score=102.74  Aligned_cols=136  Identities=13%  Similarity=-0.043  Sum_probs=99.9

Q ss_pred             hhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchh
Q 008615          376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL  455 (559)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (559)
                      ......+.|.+-++++.++ .+.++......++..++.++.|++.||+|||+++..+..+.+++.+++.....   ..++
T Consensus        42 ~~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a~~~  117 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNY  117 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---cCCH
Confidence            3456677888888888887 89999999999999999999999999999999999999999888876532111   2233


Q ss_pred             HHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 008615          456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK  515 (559)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~  515 (559)
                      ..+....+..+.......+....++.+..|++.+...+++.+....+|..+++.+.+.+.
T Consensus       118 ~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444466677767666666789999999999999998876554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.05  E-value=7.9e-09  Score=102.66  Aligned_cols=172  Identities=19%  Similarity=0.148  Sum_probs=122.9

Q ss_pred             HHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcc-hhhhhHHHHHHHH
Q 008615          367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRP-LLIGGVCGIALSL  440 (559)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~  440 (559)
                      ..++.+.........-+|.++++.|.+. .+.+++......  .+..++.|+++||+     |||| .+..+.++.+++.
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~-~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDI-QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            3344555555667778899999999998 788877665554  68889999999999     7765 5777777776666


Q ss_pred             HHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-cC
Q 008615          441 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LG  519 (559)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g  519 (559)
                      ..+.+.   ........+....+..+++.....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+. .|
T Consensus        83 ~~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g  159 (402)
T PRK11902         83 AAMAFC---PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG  159 (402)
T ss_pred             HHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence            655432   11222333333333334444445566678899999999999999999998899999999999988885 48


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          520 AENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      |+..|++.+++.++..+. .+..+|+
T Consensus       160 w~~~f~i~a~~~l~~~l~-~~~~~e~  184 (402)
T PRK11902        160 WGNTYLLMAGLMLAGALT-TLWAPEP  184 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence            999999888777665543 3445554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.02  E-value=8.9e-07  Score=86.28  Aligned_cols=336  Identities=14%  Similarity=0.012  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH------hc--h-------hHhHHHHHHHHHHhhhhhh
Q 008615          149 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------YA--P-------GLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       149 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~------~~--~-------~~~~l~~~r~l~G~~~g~~  213 (559)
                      .-.-.+...++++..|.+.||..|.+++..++++.-++..+.+      +.  .       -+..+++.-.+.|.-.-..
T Consensus        44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~La  123 (432)
T PF06963_consen   44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLA  123 (432)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence            3344456778889999999999999988777655433222221      11  1       1112222222222221111


Q ss_pred             h-hhhhhhhhccC------CcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc-c--
Q 008615          214 M-HGAPLYIAETC------PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-L--  283 (559)
Q Consensus       214 ~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~--  283 (559)
                      . ....++=.||.      +++.+.+.++...-.-.+.-+++|++.|.+.... +.+...++.++..++..+.=++ +  
T Consensus       124 s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~l~~  202 (432)
T PF06963_consen  124 SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFLLAR  202 (432)
T ss_pred             HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11222223443      3455677788888888889999999999988876 8888877777777765543322 1  


Q ss_pred             --CCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHH
Q 008615          284 --PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF  361 (559)
Q Consensus       284 --~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (559)
                        ...|. +..|+++++...+.+.+         ..  ..+...........+      .-.+....|+..++.+.+...
T Consensus       203 VY~~~P~-L~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~------~~~~~~~~w~~Y~~q~vflas  264 (432)
T PF06963_consen  203 VYNSVPA-LAVKKRSSESESSSDEE---------SS--SESSSDPSILKRLWN------PLRTIIRGWRTYFRQPVFLAS  264 (432)
T ss_pred             HHHhChH-hcCCCCCcccccccccc---------cc--ccccchhhHHHHHHH------HHHHHhccHHHHHhCHHHHHH
Confidence              11222 11110000000000000         00  000000000000000      011123456666776644433


Q ss_pred             HHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHH
Q 008615          362 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL  441 (559)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  441 (559)
                      +- +.+.++....    +......|+...|+++ ...+.+-....+.++.|.++..++.+|+|..+.-.++.....++..
T Consensus       265 ~a-lalLY~TVLs----f~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  265 FA-LALLYFTVLS----FGGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HH-HHHHHHHHhc----CcHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            32 2233332222    3444556677778888 8889999999999999999999999999998887777766655544


Q ss_pred             HHHHHHHhhcCc-hhHHHHHHHHHHH---HhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008615          442 LLSAYYKILGGF-PLVAVSALLLYVG---CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF  509 (559)
Q Consensus       442 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~  509 (559)
                      +........... +......++....   .+--++=....-+.+|.+|+++||+..|+-+...++...+.-.
T Consensus       339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            443333222222 1111111111111   1111122233367889999999999999999888887654443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.02  E-value=1.5e-08  Score=97.87  Aligned_cols=138  Identities=11%  Similarity=0.012  Sum_probs=111.8

Q ss_pred             hHHHhHHHHHHHcCCCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          378 SVLYYAGPILQSAGFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      ...+..|.+.++.|++. .+ .+.+...+..+..+..+.+|++.||+|.|+++..+.+...+..+++++.      ....
T Consensus        44 n~s~a~p~L~~elglT~-~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa------~Sl~  116 (511)
T TIGR00806        44 GESFITPYLLTVLNFTE-ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG------TSVW  116 (511)
T ss_pred             hHHHHHHHHHHHcCCCH-HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence            45556777778899998 66 9999999999999999999999999999999999998888888887763      2344


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF  524 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~  524 (559)
                      .+.+.-++.|.+..... ....++...+|+++|+++.|+.+....+|.++++++.+. ...+||+...
T Consensus       117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~  182 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence            44445555555555545 556888999999999999999999999999999999998 5567876543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.01  E-value=1.1e-08  Score=91.65  Aligned_cols=145  Identities=19%  Similarity=0.131  Sum_probs=115.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc-------hhHhHHHHHHHHHHhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-------PGLGVLLVGRLLYGLGI  210 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~l~~~r~l~G~~~  210 (559)
                      +|+|.+|...+.++-.+|..+ .++.|.+.|++|++.++.+|.+...+|..+..++       .++|.+.+..++.|.+.
T Consensus        32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~  110 (250)
T PF06813_consen   32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS  110 (250)
T ss_pred             hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence            999999999999999999987 5889999999999999999999999998887653       36788888888888888


Q ss_pred             hhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC
Q 008615          211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP  285 (559)
Q Consensus       211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  285 (559)
                      +.........-.+.|| ++||.+.|+.-...+++..+-..+...+.... .-+..+.+.....++.++..+++++
T Consensus       111 ~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  111 CWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             HHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHhhheec
Confidence            7777777666778887 57999999999999999988777766655543 4455555555555555555555543

>PRK09848 glucuronide transporter; Provisional

Probab=99.00  E-value=1.3e-08  Score=102.58  Aligned_cols=121  Identities=25%  Similarity=0.272  Sum_probs=100.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch--hHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+++..++.|+|.+...+
T Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~  338 (448)
T PRK09848        259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT  338 (448)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            666665555555555678888999999999999999999999999888887777643  677777788899999999999


Q ss_pred             hhhhhhhccCCcc-------cchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          216 GAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       216 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      ...+++.|..|.+       ++|...++.+....+|..+|+.+.+.+.+.
T Consensus       339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888753       358899999999999999999988876543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.98  E-value=2.7e-09  Score=98.00  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccc
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI  475 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (559)
                      ..+|.+...+.+..++.++..|.++||+|||.++.++.+..++..++.+.      ..++..++..-+..|.+..... +
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl~-v  140 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNLS-V  140 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCchH-H
Confidence            57889999999999999999999999999999999999998887776664      3344444444566777766655 4


Q ss_pred             cceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008615          476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE  516 (559)
Q Consensus       476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  516 (559)
                      ..++++|++++++|+.+++.++....+|.++||.+.|++..
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            45999999999999999999999999999999999999987

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.98  E-value=5.6e-09  Score=100.09  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=126.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      -+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+......
T Consensus       254 ~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~  333 (412)
T PF01306_consen  254 AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAA  333 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            35567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhH-HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          218 PLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      ..++.+.+|+|-.++...+ .+...++|.++.+.++|.+.+.. |.+..|++.+.+.++..++..+
T Consensus       334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHhee
Confidence            9999999998877777776 47889999999999999999988 9999999988887776665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.5e-08  Score=99.15  Aligned_cols=148  Identities=19%  Similarity=0.134  Sum_probs=113.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch----hH--h---HHHHHHHHHHh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GL--G---VLLVGRLLYGL  208 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~--~---~l~~~r~l~G~  208 (559)
                      -|++..++.+......+...++.+++..+.||+|||+.++++..++.+..+++....    ..  |   ..+++.++..+
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~  379 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII  379 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999988888776532    12  1   12333333333


Q ss_pred             hhhh-hhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHH-HhhccCCc
Q 008615          209 GIGL-AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPS  286 (559)
Q Consensus       209 ~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~  286 (559)
                      +.+. .-|...-+.+|.+|++.|..++++..+..-+..++-...-..+.+.. |= +.|++..+++++..+ ++..+|||
T Consensus       380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-GP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            3222 45778888999999999999999999988888887777666665555 33 667777777766555 45679998


Q ss_pred             h
Q 008615          287 P  287 (559)
Q Consensus       287 p  287 (559)
                      .
T Consensus       458 k  458 (485)
T KOG0569|consen  458 K  458 (485)
T ss_pred             C
Confidence            5

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.96  E-value=3.7e-09  Score=119.97  Aligned_cols=139  Identities=20%  Similarity=0.211  Sum_probs=120.5

Q ss_pred             cccchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAV-QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~-~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+++.++++.++.|++.+...+.
T Consensus       263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  342 (1146)
T PRK08633        263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP  342 (1146)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            788888 9999999999999999999999999999999999999888888888888889998999999999999999999


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHH
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM  276 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~  276 (559)
                      ..+++.+..|+++|++++++.+....+|.++++.+++.+.....++...|++.+.+.++.
T Consensus       343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888888776442125666676666555443

>TIGR00896 CynX cyanate transporter

Probab=98.96  E-value=9e-09  Score=100.51  Aligned_cols=149  Identities=19%  Similarity=0.139  Sum_probs=106.5

Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      .......|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++..++.+.. .     ..+.+.
T Consensus        17 ~~~~~~lp~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----~~~~~~   89 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSF-SVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----APGTAL   89 (355)
T ss_pred             ccCcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----hccHHH
Confidence            345567788889999887 889999999999999999999999999999999988877766655443 1     122332


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC--chhhHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLA  534 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~  534 (559)
                      .+ ...+..++......+....+..|.+| ++|+++.++.+....+|..+++.+.+.+.+..+  |+..|.+.+++.++.
T Consensus        90 l~-~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        90 LF-AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HH-HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            22 22222222222223333356677776 689999999999999999999999998887653  666676665544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.96  E-value=2.8e-09  Score=97.26  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchh
Q 008615          153 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT  232 (559)
Q Consensus       153 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~  232 (559)
                      .+.-..|.++.+.+.||+|||+.|..+++++++..++...+.+-..+.+.-|..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            34667888999999999999999999999999999988887654444444444444555667788999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCch
Q 008615          233 LISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP  287 (559)
Q Consensus       233 ~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p  287 (559)
                      ..|.-....-+|.++.|+++ ...+.  .--.+..+.+.++++..+...++|-.+
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999998 22222  344566777777777777777776544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.95  E-value=2.3e-08  Score=99.03  Aligned_cols=169  Identities=16%  Similarity=0.113  Sum_probs=116.4

Q ss_pred             hhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh----hcCCcchhhhh-HHHHHHHHHHHHHHHHhh
Q 008615          376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD----DLGRRPLLIGG-VCGIALSLLLLSAYYKIL  450 (559)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  450 (559)
                      +.....+.+.|++..|.+. ...+.+.....+..++..++.|+++|    |+|||+.++.. .....+++.++.......
T Consensus        20 ~~l~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~   98 (477)
T TIGR01301        20 WALQLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG   98 (477)
T ss_pred             HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            3455667777888999877 88999999999999999999999999    59999988765 444445545544321100


Q ss_pred             --------cCc-h---hHHHHHHHHHHHHhhcccccccceeecccCCccch--hhHHHHHHHHHHHHHHHHHHhhHHH--
Q 008615          451 --------GGF-P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR--GRGISLAVLTNFGSNAIVTFAFSPL--  514 (559)
Q Consensus       451 --------~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~i~~~i~g~l--  514 (559)
                              ... .   +..+..+.+.....+....|. .+++.|.+|+++|  +.+.++.+....+|+.+++.+.+..  
T Consensus        99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~  177 (477)
T TIGR01301        99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL  177 (477)
T ss_pred             hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                    000 1   122222223333333333444 4889999998765  5789999999999999999888764  


Q ss_pred             HHhc-------------CchhhHHHHHHHHHHHHHHHHhhccCCC
Q 008615          515 KELL-------------GAENIFLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       515 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                      .+.+             +.+..|++.+++.+++.++..+..+|..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            2222             3466788888888888888888888754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.95  E-value=2.2e-06  Score=84.59  Aligned_cols=116  Identities=5%  Similarity=-0.073  Sum_probs=91.1

Q ss_pred             chhHHHHHHHHHHHHHHHH-HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc----h---------------------
Q 008615          141 SAVQLGLVVSGSLYGALLG-SILVYSIADFLGRKRELIIAAVLYALGALTTAYA----P---------------------  194 (559)
Q Consensus       141 s~~~~g~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~---------------------  194 (559)
                      ....+.++-+...+..++. .++.+++++|++|++++-+....+....+++++.    +                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4468999999888877777 9999999999999999988777777666666654    1                     


Q ss_pred             ------hHhHHHHHHHHHHhhhhhhhh-hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008615          195 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI  256 (559)
Q Consensus       195 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  256 (559)
                            +.|...+.-+...+-...... .-..+.+|.++.+|-.|..+++..+.++|.++++.+..++.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  123333444555555555555 77889999999999999999999999999999999888866

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.92  E-value=4.7e-09  Score=98.96  Aligned_cols=118  Identities=23%  Similarity=0.361  Sum_probs=91.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhchHHHHHH-HHHHHHHHHHHHHhchhHh---------------
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELII-AAVLYALGALTTAYAPGLG---------------  197 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~~---------------  197 (559)
                      +|+.....+.+--...+...+.+++.|..+|    ||||||.++. +.+..+++.++.+++.++.               
T Consensus        62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra  141 (498)
T KOG0637|consen   62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA  141 (498)
T ss_pred             cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence            6677777777777788888999999999999    5998877654 5555667777777765432               


Q ss_pred             --HHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchh-hhhHHHHHHHHHHHHHHHhhhcc
Q 008615          198 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT-LISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       198 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                        .++++--+.=++.-.....+-+++.|....+++.+ +++.+.....+|..+|..+++++
T Consensus       142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence              34444455556666788889999999998777766 99999999999999999998853

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.92  E-value=1.5e-08  Score=100.38  Aligned_cols=150  Identities=16%  Similarity=0.056  Sum_probs=124.9

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhh
Q 008615          390 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ  469 (559)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (559)
                      ..+++ .+-+++......+.+++.+.+|++.||+|.|+++..+.++.+++.++..+....    ....+++.-++.|+..
T Consensus        68 ~~ws~-~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~----~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   68 YDWSS-TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI----GFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             ecCCH-HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh----cchhhHHHHHHhHHHH
Confidence            34444 678889999999999999999999999999999999999999998888876532    2224455555666555


Q ss_pred             cccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          470 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      ....|....+...-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.+++.++..++.+++..+
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            556677778899999999999999999999999999999999999998 999999999999988887766665543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.91  E-value=1e-07  Score=90.88  Aligned_cols=135  Identities=18%  Similarity=0.067  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 008615          144 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE  223 (559)
Q Consensus       144 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  223 (559)
                      -.+.+.-+-.+...+..+++.+..+|+..+.=..++.+++.++.++.+++++.+.=+++-++.+++.|........+.. 
T Consensus        60 ~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   60 STGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             cchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            3445555666677777788888999988665566666688889999999999999999999999999988888888644 


Q ss_pred             cCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc
Q 008615          224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL  283 (559)
Q Consensus       224 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  283 (559)
                      .+++    ..++-+..+.+.+.++|+..-..+...-.+-|..+++...+.++..+..+++
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5543    3578888889989999988766665521134778888777776665555443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.91  E-value=2.2e-08  Score=97.91  Aligned_cols=148  Identities=24%  Similarity=0.349  Sum_probs=118.9

Q ss_pred             cc-cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc-hhHhHHHH----HHHHHHhhhh
Q 008615          138 FN-LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLV----GRLLYGLGIG  211 (559)
Q Consensus       138 ~~-~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~----~r~l~G~~~g  211 (559)
                      .| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+..++    ...++|+..+
T Consensus       237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~  316 (400)
T PF03825_consen  237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG  316 (400)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence            55 567777888888888888999999999999999999999999999988888887 55444333    3456999999


Q ss_pred             hhhhhhhhhhhccCCcccchhhhhHHHH-HHHHHHHHHHHhhhcccCCCC-----cchHHHhhhHHHHHHHHHHh-hccC
Q 008615          212 LAMHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-WSLP  284 (559)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~-----~wr~~f~~~~~~~~~~~~~~-~~~~  284 (559)
                      ..+.....++.+..|++.|+++.+++.+ ..++|..+|..++|++.+..+     .|...+.+.+++.++..+++ ++++
T Consensus       317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999876 478999999999999988762     34455666666666555544 3344


Q ss_pred             C
Q 008615          285 P  285 (559)
Q Consensus       285 e  285 (559)
                      |
T Consensus       397 ~  397 (400)
T PF03825_consen  397 P  397 (400)
T ss_pred             C
Confidence            3

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.90  E-value=6.3e-07  Score=92.65  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=119.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhchh--------HhHHHHHHHHHHh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPG--------LGVLLVGRLLYGL  208 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~  208 (559)
                      +|.+......+...+....-+..+++|.++|+ +||++.++++.++..+|.++.+++..        ....+++-.+..+
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            78888999999999999999999999999995 69999999999999999988877421        2346677888899


Q ss_pred             hhhhhhhhhhhhhhccCCcc---cchhhhhHHHHHHHHHHHHHHHhhhcccCCC------CcchHHHhhhHHHHHHHHHH
Q 008615          209 GIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG  279 (559)
Q Consensus       209 ~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------~~wr~~f~~~~~~~~~~~~~  279 (559)
                      |.|+.-++..+...|.++++   +|...+.++..+.++|.++++++..++.+..      .+|...|.+.++..++.+++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999754   3667888999999999999999888875321      26999999998888877665


Q ss_pred             hh
Q 008615          280 MW  281 (559)
Q Consensus       280 ~~  281 (559)
                      .+
T Consensus       178 f~  179 (654)
T TIGR00926       178 FM  179 (654)
T ss_pred             HH
Confidence            54

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.84  E-value=3e-08  Score=94.87  Aligned_cols=139  Identities=37%  Similarity=0.577  Sum_probs=115.3

Q ss_pred             cccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchh--HhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~--~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~  213 (559)
                      ++.+.  .+.++..+.+.++..++.++.|.++||+|||+.++.+.....++.+++++..+  .+.+++.|+++|++.+..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  111 (338)
T COG0477          32 LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGL  111 (338)
T ss_pred             cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHH
Confidence            44444  58899999999999999999999999999999988888776677777777776  899999999999999999


Q ss_pred             hhhhhhhhhccCCc-ccchhhhhHHHH-HHHHHHHHHHHhhhcccCC-CCcchHHHhhhHHHHHHH
Q 008615          214 MHGAPLYIAETCPS-QIRGTLISLKEL-FIVLGILLGYFVGSFQINA-VGGWRYMYGLSAPLALLM  276 (559)
Q Consensus       214 ~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~-~~~wr~~f~~~~~~~~~~  276 (559)
                      .+...+++.|++++ ++|+...+.... ...+|..+++.+++.+... ..+||+.|++........
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            99999999999987 678999998888 5888889998777766543 228999776666555443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.80  E-value=2.4e-07  Score=94.05  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=95.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh-----chhHhHHHHHHHHHHhhhhhhhh
Q 008615          141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       141 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+     ..+.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777899999999999999999999999888877766655432     34567777788899999999999


Q ss_pred             hhhhhhhccCC-------cccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          216 GAPLYIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       216 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      ...+++.|..+       .++.|..++.......+|..+++.+.+++.+.
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999966       34456689999999999999999998887653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=7.9e-08  Score=99.03  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccc
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI  475 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (559)
                      ....+...+..++.++|.++.|.++||+|||++++.+.++..++.+..++      ..++..+.++-++.|++..+...+
T Consensus       118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------a~~~~~~~~~Rfl~G~~~~~~~~~  191 (521)
T KOG0255|consen  118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------APNYWMFLIFRFLSGFFGSGPLTV  191 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHhhccchhHH
Confidence            56778888889999999999999999999999999999999888866664      345556666667777777777777


Q ss_pred             cceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      ...+..|.++++.|+.+..+ ......++.+++...+++..  +|++.+++.....++..++ +++.+|.
T Consensus       192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            88999999999999999999 77888888999998888877  7888888777776666554 4445454

>PRK09669 putative symporter YagG; Provisional

Probab=98.79  E-value=2.6e-07  Score=93.07  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh--chhHhHHHHHHHHHHhhhhhhhhhhhhh
Q 008615          143 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY--APGLGVLLVGRLLYGLGIGLAMHGAPLY  220 (559)
Q Consensus       143 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~  220 (559)
                      ...+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+  .++.+.+++..++.|++.+...+...++
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777888899999999999999999999888776654443332  3577778888899999999999999999


Q ss_pred             hhccCCc-------ccchhhhhHHHHHHHHHHHHHHHhhhcccCCC
Q 008615          221 IAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINAV  259 (559)
Q Consensus       221 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~  259 (559)
                      ++|..+.       ++.|...+.......+|..+|+.+++.+.+..
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9998862       33466788888899999999999998876644

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.79  E-value=4.8e-08  Score=93.97  Aligned_cols=147  Identities=20%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhh
Q 008615          391 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ  469 (559)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (559)
                      |+++ .++......+....-+..+++||++|| +|+|+.++.+.+++.++.++++...   ........+.+ .+..+..
T Consensus        57 g~~~-~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L-~~I~iG~  131 (498)
T COG3104          57 GFDE-THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGL-ALIIVGT  131 (498)
T ss_pred             CcCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHH-HHHHhcc
Confidence            3777 555555555555556778899999999 5999999999999999999888521   01122223333 3333444


Q ss_pred             cccccccceeecccCCcc--chhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhc
Q 008615          470 ISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV  542 (559)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (559)
                      +.+=+....++.|++|++  .|-.+.++..+..++|+.++|.+.+++.++.||+..|...++-..++.+..++..
T Consensus       132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            555566668889998854  3666778888889999999999999999999999999998888888777665544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=9.9e-08  Score=84.07  Aligned_cols=143  Identities=19%  Similarity=0.167  Sum_probs=106.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH-HHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA-LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~-i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      ||+|+...+-+.+.-....++.+++.|.++||+|++.+.+.+..+.. ++-.+..+  +++.=+.+..+.|+........
T Consensus       295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs  372 (459)
T KOG4686|consen  295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS  372 (459)
T ss_pred             hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999987776554443 33333333  3344455667788876655554


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH---HhhhHHHHHHHHHHhhc
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM---YGLSAPLALLMGIGMWS  282 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~---f~~~~~~~~~~~~~~~~  282 (559)
                      ....++...|+++.|++.+..+...++|..+-|++++.+.+..+++-+.   |.+.+.+++....+.+.
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            5667778889999999999999999999999999999999876444443   33444444444333343

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.76  E-value=6.8e-08  Score=96.81  Aligned_cols=116  Identities=21%  Similarity=0.240  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch--hHhHHHHHHHHHHhhhhhhhhhhhhh
Q 008615          143 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMHGAPLY  220 (559)
Q Consensus       143 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~  220 (559)
                      ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  +.+.+++.-++.|++.+...+...++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5678888899999999999999999999999999999999999999988886  99999999999999999999999999


Q ss_pred             hhccCCc-------ccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          221 IAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       221 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      ++|..+.       ++.|..++.......+|..+++.+.+.+.+.
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999873       3458889999999999999999988876644

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.75  E-value=4.4e-07  Score=84.86  Aligned_cols=157  Identities=12%  Similarity=-0.021  Sum_probs=115.7

Q ss_pred             hHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      ..-...|.+.+.+..+. .+++++......+..+.++..+++.+|+|.|+-++.++.++++++.++.....   ...+..
T Consensus        31 l~diLip~l~~~f~ls~-~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---~~~y~~  106 (422)
T COG0738          31 LNDILIPHLKEVFDLTY-FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---SKSYGF  106 (422)
T ss_pred             cchhhHHHHHHHhCccH-HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---hhhHHH
Confidence            34445677777777777 89999999999999999999999999999999999999999999988864322   222333


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh-------------------c
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-------------------L  518 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~-------------------~  518 (559)
                      .....+..+.+..........++..+.+++....-+.+.+.++.+|++++|.+.+.+..+                   -
T Consensus       107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~  186 (422)
T COG0738         107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS  186 (422)
T ss_pred             HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence            333223333333333444557888888888888899999999999999999999998873                   1


Q ss_pred             CchhhHHHHHHHHHHHHHHH
Q 008615          519 GAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       519 g~~~~~~~~~~~~~~~~~~~  538 (559)
                      .++.+|...+.++++..+..
T Consensus       187 ~v~~pYl~~~~~lvll~v~~  206 (422)
T COG0738         187 SVQFPYLILAGLLVLLAVLI  206 (422)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence            25566776666665555433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.74  E-value=1.8e-07  Score=83.86  Aligned_cols=167  Identities=18%  Similarity=0.107  Sum_probs=110.3

Q ss_pred             HhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc
Q 008615          372 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG  451 (559)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (559)
                      .....+.+..|.|.+-++.+++. .+...+.....++..+| ++.|.+.|++|.+.++.++.+...++...+.......-
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq-~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i   91 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRLGYSQ-SQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI   91 (250)
T ss_pred             hcCcccchhhhhHHHHHHhCCCH-HHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            33455678889999999999998 78888888888888764 88899999999999999999999999888776543221


Q ss_pred             C-chhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHH
Q 008615          452 G-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI  530 (559)
Q Consensus       452 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~  530 (559)
                      . .+.+.+....+..+.....+.........+.+| ++||++.|+.-....+++++...+...+.+. +....+++.+..
T Consensus        92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~  169 (250)
T PF06813_consen   92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVL  169 (250)
T ss_pred             CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            1 233333333333222222222222233446778 6899999999999999988888887777655 322333344444


Q ss_pred             HHHHHHHHHhhc
Q 008615          531 AFLAVLFIVRTV  542 (559)
Q Consensus       531 ~~~~~~~~~~~~  542 (559)
                      ..+..++...++
T Consensus       170 ~~~v~l~~~~~v  181 (250)
T PF06813_consen  170 PAVVCLVAMFFV  181 (250)
T ss_pred             HHHHHHHHhhhe
Confidence            333333333333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.70  E-value=3.3e-07  Score=84.32  Aligned_cols=178  Identities=25%  Similarity=0.204  Sum_probs=135.0

Q ss_pred             cchhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-c
Q 008615           93 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-G  171 (559)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-G  171 (559)
                      -|+.+..|.+.+...+..+.++...++    +|.+..|       -|+|..+.|++.+...+......+....+++|. .
T Consensus       204 vw~~~~aW~vtLfmGlqS~~~Y~~~~W----LP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n  272 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLLYYIVIGW----LPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN  272 (395)
T ss_pred             cccCchhHHHHHHHHhhHHHHHHHHHH----HHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344444555555555555555555555    3444445       799999999999999999999999999999975 5


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCccc-chhhhhHHHHHHHHHHHHHHH
Q 008615          172 RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQI-RGTLISLKELFIVLGILLGYF  250 (559)
Q Consensus       172 rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~  250 (559)
                      +|+..+....++.++.+.+.+.+.-..++. -++.|+|.|..++....++.+..+..+ -++-.+..+....+=..+||.
T Consensus       273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence            677777888888888888877765433333 499999999999999999998886544 445556666666666778999


Q ss_pred             hhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          251 VGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       251 l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      +.|++-|..++|+..++..+...+++.+.-+.
T Consensus       352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            99999998889999999888888776665554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.70  E-value=2.3e-07  Score=81.06  Aligned_cols=342  Identities=15%  Similarity=0.150  Sum_probs=174.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      ++....++|.+.-+.+-...++..+.|.|+|+-|||+.-+.-.+.+.+++ ++-.++.|-.++++|++-|+..+..+...
T Consensus        67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaF  145 (454)
T KOG4332|consen   67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAF  145 (454)
T ss_pred             cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence            67778889988888888889999999999999999997554443333322 23457889999999999999999888877


Q ss_pred             hhh-hhccCCcccchhhhhHHH--------HHHHHHHHHHHHhhhcccCCCC-cchHHHhhhHHHHHHHHHHhhc-cCCc
Q 008615          218 PLY-IAETCPSQIRGTLISLKE--------LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWS-LPPS  286 (559)
Q Consensus       218 ~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~-~~e~  286 (559)
                      -++ +.|.-+  +|+.---+..        .+..+-.+++.+.+..+.+... |--.+|-..+.+..+...+.+- .-|.
T Consensus       146 EsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~EN  223 (454)
T KOG4332|consen  146 ESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSEN  223 (454)
T ss_pred             HHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhc
Confidence            665 455542  2332222211        2233334455555555554431 4444555544443333222221 1110


Q ss_pred             hHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHH
Q 008615          287 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG  366 (559)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (559)
                      -               +++.+.+..+.+.+                              ...+.+..+.   ++.+.-.
T Consensus       224 y---------------gdps~~kdlltqf~------------------------------gaa~aiaSD~---ki~LLG~  255 (454)
T KOG4332|consen  224 Y---------------GDPSENKDLLTQFK------------------------------GAARAIASDE---KIALLGA  255 (454)
T ss_pred             c---------------CChhhhHHHHHHhh------------------------------HhHHHHhcch---HHHHHHH
Confidence            0               01111111111111                              0112222222   2222222


Q ss_pred             HHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--chhhhhHHHHHHHHHHHH
Q 008615          367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PLLIGGVCGIALSLLLLS  444 (559)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~  444 (559)
                      +........+..+..|.|.+-.+-..   .--|.++..+.+..++|+-+..++..|-..|  ..+.+.+.+..+.+.+..
T Consensus       256 iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi  332 (454)
T KOG4332|consen  256 IQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI  332 (454)
T ss_pred             HHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            22333333333344455543211111   2356677777788888888887776654433  334444444444433333


Q ss_pred             HHHHhh--cCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh--cCc
Q 008615          445 AYYKIL--GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL--LGA  520 (559)
Q Consensus       445 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~--~g~  520 (559)
                      ......  ...+...++.++++-.+.+..+. ...-+-.+..|.+.|++.+-+...--++...++-+..  =.+.  .+.
T Consensus       333 lt~~vsP~kes~~~s~i~F~~~E~cvGlfwP-SimkmRsqyIPEearstimNfFRvPLnifvClvLynl--h~~~~p~~t  409 (454)
T KOG4332|consen  333 LTSSVSPSKESPSESLIGFCLFEACVGLFWP-SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL--HVDAFPTTT  409 (454)
T ss_pred             HHhccCCCcCCchHHHHHHHHHHHHHhhcch-HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec--ccccCcccc
Confidence            222111  11233345566666666655544 4445667788988888665554333333222221110  0111  233


Q ss_pred             hhhHHHHHHHHHHHHH
Q 008615          521 ENIFLLFAAIAFLAVL  536 (559)
Q Consensus       521 ~~~~~~~~~~~~~~~~  536 (559)
                      +..|-++.+...++.+
T Consensus       410 r~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  410 RNMFGICSAFLFVASI  425 (454)
T ss_pred             chhhhhhHHHHHHHHH
Confidence            4566666665555544

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.65  E-value=2.2e-07  Score=84.36  Aligned_cols=370  Identities=15%  Similarity=0.152  Sum_probs=216.4

Q ss_pred             cccchhHHH-HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      .|++..|+. -+.=...-.+.+.-++.=.+.|..-.|+++++-.+...+..++.-+.++.+.+-+.-++.|...+ ...+
T Consensus        36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA  114 (433)
T KOG3810|consen   36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA  114 (433)
T ss_pred             CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence            577777653 22333344556666666779999999999988877788888888899999999999999999776 5777


Q ss_pred             hhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCC-cchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhc
Q 008615          217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV  295 (559)
Q Consensus       217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~  295 (559)
                      -++++-+..+++++.++.+...+..-.|..+|..++-.++.... ++...=++......+..++.+++|..+|-+.-+++
T Consensus       115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~  194 (433)
T KOG3810|consen  115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL  194 (433)
T ss_pred             hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence            88999999999999999999999999999999999888776541 23333334444444455566777776653333211


Q ss_pred             cCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhC
Q 008615          296 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG  375 (559)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (559)
                      +.+           ....+....++.. ...+......         ..-...+.+..++|.....-+.    +.....+
T Consensus       195 ~~~-----------~~v~~~e~~~~~~-~~~~~l~~~~---------~~l~~~l~~~y~np~ll~WSlW----wAl~scg  249 (433)
T KOG3810|consen  195 EDK-----------ISVGDLEEMNPQA-SYMSYLRGAF---------VLLWRDLQECYSNPRLLKWSLW----WALASCG  249 (433)
T ss_pred             ccc-----------ceeccchhcCccc-hhhHHHHHHH---------HHHHHHHHHHhcCchhhhhHHH----HHHhhch
Confidence            110           0000000000000 0000000000         0001124455666654433322    2233334


Q ss_pred             hhhHHHhHHHHHHHcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCch
Q 008615          376 QPSVLYYAGPILQSAGFS-AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP  454 (559)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (559)
                      ++-+.+|...+.++..-. ....-|..=++..+.+.++.+..|.+.-++.|..-+.++......+.+++..   ....+.
T Consensus       250 ~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m---~~t~~I  326 (433)
T KOG3810|consen  250 YYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM---AQTQHI  326 (433)
T ss_pred             hHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh---hcccce
Confidence            445777777777665322 1123445555666777788888888876666654433333322222222221   123445


Q ss_pred             hHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-----------chhh
Q 008615          455 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-----------AENI  523 (559)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-----------~~~~  523 (559)
                      |+..+...++...+........ ..+++....+.-|...|+..++.-+-..+...+   ..|..|           +..-
T Consensus       327 w~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Y  402 (433)
T KOG3810|consen  327 WVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSY  402 (433)
T ss_pred             ehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeeh
Confidence            6666666666666655544333 333444466778899999887765554444433   334222           3345


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 008615          524 FLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       524 ~~~~~~~~~~~~~~~~~  540 (559)
                      |++.+++.+++..+.+.
T Consensus       403 f~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  403 FIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77788887777665443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.65  E-value=3.3e-06  Score=82.22  Aligned_cols=121  Identities=25%  Similarity=0.360  Sum_probs=103.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch--hHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+.+  +.+.+++..++.++|.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            566777788888888888888899999999999999999999999999999988865  788888999999999999999


Q ss_pred             hhhhhhhccCCc-------ccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          216 GAPLYIAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       216 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                      ...++++|..+-       +.-|...+......-+|.+++..+.++.+..
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987752       3447778888888888998888777776543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.65  E-value=4.8e-06  Score=76.83  Aligned_cols=351  Identities=13%  Similarity=-0.005  Sum_probs=184.4

Q ss_pred             HHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhchHHHHH-HHHH
Q 008615          108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELI-IAAV  181 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~~~~-~~~~  181 (559)
                      +-.++.|.-.+... .+|.+.+.       -|+|.++.+...-++ .. -.--++|.++.|     |+||||.-+ -+..
T Consensus        38 ~LYllQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   38 FLYLLQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             HHHHHcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            33577777777776 67766653       477777766553332 12 234678999999     999988543 2333


Q ss_pred             HHHHHHHHHHh-----------chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHH
Q 008615          182 LYALGALTTAY-----------APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF  250 (559)
Q Consensus       182 ~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  250 (559)
                      +.+...++.+.           .++...+...-++.-+.++..-.+.-.+...+..+++.|.+......+.+.|.+++..
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            33333333332           1233344445566667777777778888888888999888888888888888888776


Q ss_pred             hhhcccCC------CCcch---------HHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhh
Q 008615          251 VGSFQINA------VGGWR---------YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKL  315 (559)
Q Consensus       251 l~~~l~~~------~~~wr---------~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (559)
                      +.-.+.+.      ..+|.         ...++.+.+.++.-.+..+..+++..             ...+|        
T Consensus       188 ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~-------------~~~~e--------  246 (510)
T KOG3574|consen  188 VFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE-------------SVDEE--------  246 (510)
T ss_pred             eeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch-------------hhhhh--------
Confidence            65444331      01232         12344455555554444444332210             00000        


Q ss_pred             cCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCc
Q 008615          316 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAA  395 (559)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (559)
                                      .      ........+-++++++-|..+.+.......=+.+.    .--...+.-+-+.|.+. 
T Consensus       247 ----------------~------~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~----a~da~t~LkLle~Gv~k-  299 (510)
T KOG3574|consen  247 ----------------L------ELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQ----AADALTSLKLLEHGVPK-  299 (510)
T ss_pred             ----------------h------hcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhh----hhhhccchHHHHcCCCh-
Confidence                            0      00001111235666776665554443333322221    23333445566788887 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcchhhhhHHHHHHHHHHHHHHHHhhcC----chhHHHHHHH---
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDL------GRRPLLIGGVCGIALSLLLLSAYYKILGG----FPLVAVSALL---  462 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---  462 (559)
                      ...++...+..-..++.....|++...-      -|+-...+...   ....++.+.......    -+....+..+   
T Consensus       300 e~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~---~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y  376 (510)
T KOG3574|consen  300 EELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGG---LVQTALVWWTPTLGHSDGTFPRGYYILLITSY  376 (510)
T ss_pred             hHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHH---HHHHHHHhhhcccccCCCceeechHHHHHHHH
Confidence            5555544444444444444444443311      11111122111   111222221111111    1111111111   


Q ss_pred             HHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 008615          463 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG  519 (559)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  519 (559)
                      .+..++.-......++..+.+.++...|+.|.+.|+..++|+-.-..+..++.|..+
T Consensus       377 ~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  377 AFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            111111111112233677888899999999999999999999888888888887644

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.64  E-value=5.5e-06  Score=81.79  Aligned_cols=350  Identities=12%  Similarity=-0.013  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH-Hh-------chhHhHHHHHHHHHHhhhhhhhhhhh
Q 008615          147 LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT-AY-------APGLGVLLVGRLLYGLGIGLAMHGAP  218 (559)
Q Consensus       147 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~-~~-------~~~~~~l~~~r~l~G~~~g~~~~~~~  218 (559)
                      ++.-...+...+..+..-.+..|+..|.=++.++++..+..++. .+       ...++..++.-++.|++.+.......
T Consensus        49 ~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~  128 (437)
T TIGR00939        49 YYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLF  128 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccch
Confidence            33334444555555555566666664322333333222222221 11       12567777788899999998888888


Q ss_pred             hhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhc----ccCCC-Ccch--HHHhhhHHHHHHHHHHhhccCCchHHH-
Q 008615          219 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF----QINAV-GGWR--YMYGLSAPLALLMGIGMWSLPPSPRWL-  290 (559)
Q Consensus       219 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~----l~~~~-~~wr--~~f~~~~~~~~~~~~~~~~~~e~p~~~-  290 (559)
                      .+.+ .+|++    .+..+..+.+++++++.++--.    ..+.. ..++  .-|.+..++.+++++....++..|... 
T Consensus       129 gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~~~  203 (437)
T TIGR00939       129 GLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPFARY  203 (437)
T ss_pred             hhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            8766 56654    3555555556655555544221    11210 0122  224445555555666666677776422 


Q ss_pred             -HHhhccCCCchhhhHHHHHHHHHhhcCCCC----CCchhhH-HHHHHHHHhhhccccccccccchhhcccCchhHHHHH
Q 008615          291 -LLRAVQGKGSLQEYKEQAISALGKLRRRPP----GDKLSER-QIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG  364 (559)
Q Consensus       291 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (559)
                       .++.+..+...    ++.++......+.++    .++.+.. +.....+......++.+.+.+.+.++|+  .|...+.
T Consensus       204 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kk--i~~~~~~  277 (437)
T TIGR00939       204 YLQKKLDKGAGE----DETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTK--VWLLAFS  277 (437)
T ss_pred             HHHhhccccccc----ccccccccccccccccccccccccccccccccccccCCccchhcccCcHHHHHHH--HHHHHHH
Confidence             21111000000    000000000000000    0000000 0000000000001111223445555553  3444544


Q ss_pred             HHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-chhhhhHHHHHHHHHHH
Q 008615          365 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVCGIALSLLLL  443 (559)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~  443 (559)
                      .++.++.....+..+......  .+.+.++....-.....++++.++|+.+..+.. .-++| +.+.+..++=.+..-++
T Consensus       278 vf~~F~vTL~vFPgv~~~i~~--~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf  354 (437)
T TIGR00939       278 VVFVFTVTLSVFPAITTAVTS--SGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLF  354 (437)
T ss_pred             HHHHHHHHHHhcCceEEEeec--cCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHH
Confidence            445554443333332222111  011222212455777888899999998765432 11222 13322222222222222


Q ss_pred             HHHHHhhc------CchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHh
Q 008615          444 SAYYKILG------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA  510 (559)
Q Consensus       444 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i  510 (559)
                      .++...+.      -.+-+......+..+...+........+..+.+++++|..+..+...+..+|-.+|+.+
T Consensus       355 ~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       355 LLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211100      01222233334444444444555556777888888899888888888877777777664

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.63  E-value=1.4e-06  Score=89.39  Aligned_cols=140  Identities=17%  Similarity=0.097  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccc
Q 008615          398 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW  477 (559)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (559)
                      .+++.....++..++.++.|+++|++|||+.+..+.+...++.++.....      ....+...-++.+...++...+..
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------~~~~l~~GR~l~G~g~G~~~~~~p  164 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------SWYQLIVGRILTGLGVGGASVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHhccchhhhhhcch
Confidence            37999999999999999999999999999999999999999988887632      333333333444444444445556


Q ss_pred             eeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhc--CchhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          478 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--GAENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       478 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      .+.+|..|++.||...+..+....+|..++ .+.+....+.  +|+..+.+..+.+++..+. .++.||.
T Consensus       165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            899999999999999999998888776666 6666666553  7876666666666666655 6666654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.61  E-value=3.4e-07  Score=92.34  Aligned_cols=147  Identities=17%  Similarity=0.158  Sum_probs=119.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc----------hhHhHHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----------PGLGVLLVGRLLYG  207 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~l~G  207 (559)
                      +|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+.          ++.+.++..-++.+
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            89999999999999999999999999999999999999999999999888665321          33445556678999


Q ss_pred             hhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCc-----chHHHhhhH---HHHHHHHHH
Q 008615          208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-----WRYMYGLSA---PLALLMGIG  279 (559)
Q Consensus       208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-----wr~~f~~~~---~~~~~~~~~  279 (559)
                      ++.+..+.....++.+..|+++++...++..+..++|..+++.+++.+.+.. |     .+..+++..   +..++.+..
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~-g~~~~~~~~~~~~i~i~~~~~l~~l~~  441 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI-GITCDNSNNLWLLILGHSLAPLLPLPL  441 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887655 3     444443333   333333334


Q ss_pred             hhccCC
Q 008615          280 MWSLPP  285 (559)
Q Consensus       280 ~~~~~e  285 (559)
                      .+++|+
T Consensus       442 ~~llP~  447 (468)
T TIGR00788       442 LHLLPR  447 (468)
T ss_pred             HHhCCC
Confidence            456775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.59  E-value=2e-07  Score=92.71  Aligned_cols=146  Identities=12%  Similarity=0.031  Sum_probs=113.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccc
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI  475 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (559)
                      .+.+...+.+.++.+++.+.++.+.||++-.+.+....++    ..++.+....  ..+...+++.-++.|++..+..|.
T Consensus        81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~----w~~~~~~~~~--~~s~~~~ialr~llGl~es~~wP~  154 (495)
T KOG2533|consen   81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL----WGLFGFLTAA--VHSFPGLIALRFLLGLFESGGWPG  154 (495)
T ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH----HHHHHHHHHH--HhhhHHHHHHHHHHHHHhcccchH
Confidence            6788899999999999999999999999944444333332    2222221111  234555666677777777777787


Q ss_pred             cceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH------hcCchhhHHHHHHHHHHHHHHHHhhccCCCC
Q 008615          476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVRTVPETKG  547 (559)
Q Consensus       476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (559)
                      ...++..-+.+++|+.-+|+..+...+|+++++.+...+..      ..||++.|++-+++.++..+++++++|+...
T Consensus       155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            77899999999999999999999999999999999887643      4689999999999999999888888876433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.53  E-value=5.4e-08  Score=93.74  Aligned_cols=144  Identities=19%  Similarity=0.224  Sum_probs=130.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .+..+...|........+-.+.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|..+..-+++|+..+..+.+.
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence            56667777888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHHH-HHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          218 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      .+|+++..|++-|..+-++.+ ...++|-.+|.++||.+...+ +-|..|++.++.+++.+++...
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998865 456889999999999999888 8899999999888887666544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.51  E-value=3.1e-06  Score=83.70  Aligned_cols=185  Identities=19%  Similarity=0.129  Sum_probs=128.2

Q ss_pred             hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHH----HHHHHHHHHHHHHHhhhcCCcchhhhhH
Q 008615          358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI----GVFKLVMTWIAVAKVDDLGRRPLLIGGV  433 (559)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~d~~~~~~~~~~~~  433 (559)
                      .+......++..+.............+......+.......+......    ++..++.....|.++||+|||..+....
T Consensus        20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~   99 (463)
T KOG2816|consen   20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL   99 (463)
T ss_pred             hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence            344444444555555444433444444333333333223344444444    6788889999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 008615          434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP  513 (559)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~  513 (559)
                      +...+..+.+.+.       .++.++ ..-..+.+. .......++.++....+.|....|+.+.....+..++|.+.+.
T Consensus       100 ~~~~l~~~~~~~~-------~~~~~~-~~~l~g~~~-~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~  170 (463)
T KOG2816|consen  100 FGTILPALCLLFQ-------GYWFFL-LLGLSGGFS-AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY  170 (463)
T ss_pred             HHHHHhHHHHHHH-------HHHHhh-hcccccchh-hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            7777766666542       132222 222222222 2334556889999999999999999999999999999999999


Q ss_pred             HHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 008615          514 LKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE  551 (559)
Q Consensus       514 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (559)
                      +....|+..++.+..+..++..+...+++||+..++.+
T Consensus       171 ~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  171 LVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            99999999999999999999999999999987655443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.48  E-value=9.7e-06  Score=76.78  Aligned_cols=144  Identities=22%  Similarity=0.203  Sum_probs=120.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhh-hhchHHHHHHHHHHHHHHHHHHHh---chhHhHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD-FLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~  213 (559)
                      ||++..|...++..+..|..++....|++.. |.++|+.-.+|+.+..++..+..+   ..+.+.+...-++.|++.|..
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence            8999999999999999999999999999888 678888888888887777666444   467889999999999999999


Q ss_pred             hhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC---------CCcchHHHhhhHHHHHHHHHHhh
Q 008615          214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYMYGLSAPLALLMGIGMW  281 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---------~~~wr~~f~~~~~~~~~~~~~~~  281 (559)
                      .....+...+...+++.|..+|.+.....++..+|..+|+.+.|.         ..+|-.+|.+.++..++.+++..
T Consensus       319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998876542         12566667777766666555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.42  E-value=6.1e-07  Score=64.58  Aligned_cols=81  Identities=21%  Similarity=0.185  Sum_probs=72.6

Q ss_pred             hcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 008615          113 FGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  192 (559)
                      .|.....+.+.+|.++++       .++|.++.||+.+.+++||.+|.+...++.++..+++.+..++++..+..+.+++
T Consensus         4 mGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            355566677888888887       8999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHhHHH
Q 008615          193 APGLGVLL  200 (559)
Q Consensus       193 ~~~~~~l~  200 (559)
                      .++++.+.
T Consensus        77 ~~~~~~w~   84 (85)
T PF06779_consen   77 THSFWLWS   84 (85)
T ss_pred             HhchHHHh
Confidence            98877653

Note that many members are hypothetical proteins.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.41  E-value=0.00019  Score=73.12  Aligned_cols=143  Identities=20%  Similarity=0.148  Sum_probs=113.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhchh---------------------
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPG---------------------  195 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~---------------------  195 (559)
                      ++.+...+.-..+.+.-...+..++++.++|-| ||-+++.++.++..+|.++..++..                     
T Consensus        68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~  147 (571)
T KOG1237|consen   68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP  147 (571)
T ss_pred             hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence            777778888888888888889999999999965 8999999999998888665554321                     


Q ss_pred             ----HhHHHHHHHHHHhhhhhhhhhhhhhhhccCC---cc---cchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          196 ----LGVLLVGRLLYGLGIGLAMHGAPLYIAETCP---SQ---IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       196 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                          ...++.+.-+..+|.|+.-+...++-+|-++   ++   ++...+.++....++|..++..+-.+.-+.. +|.+.
T Consensus       148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lg  226 (571)
T KOG1237|consen  148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLG  226 (571)
T ss_pred             chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceee
Confidence                1255666777888999999999999999998   32   2336788999999999999988888765565 99999


Q ss_pred             HhhhHHHHHHHHHHhh
Q 008615          266 YGLSAPLALLMGIGMW  281 (559)
Q Consensus       266 f~~~~~~~~~~~~~~~  281 (559)
                      |.+..+..++.+++++
T Consensus       227 f~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  227 FGIPTVLNALAILIFL  242 (571)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            9998877776665554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.37  E-value=2.6e-05  Score=72.64  Aligned_cols=156  Identities=19%  Similarity=0.065  Sum_probs=98.8

Q ss_pred             HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 008615          385 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLY  464 (559)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (559)
                      .++++.|+.. .+.+.++........+...+.|.++||+|||+.-+...++..++++..-       ......++.-=++
T Consensus        59 ~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-------~~~~~~L~~GRvl  130 (354)
T PF05631_consen   59 ALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-------SSNYPVLLLGRVL  130 (354)
T ss_pred             HHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHH
Confidence            4456788887 7788888888888888899999999999999998888888887776543       2223333333233


Q ss_pred             HHHhhccccccc-ceeecc----cCCccchhhHHHHHHH-HHHHHHHHHHHhhHHHHHhcCc--hhhHHHHHHHHHHHHH
Q 008615          465 VGCYQISFGPIS-WLMVSE----IFPLRTRGRGISLAVL-TNFGSNAIVTFAFSPLKELLGA--ENIFLLFAAIAFLAVL  536 (559)
Q Consensus       465 ~~~~~~~~~~~~-~~~~~~----~~p~~~~~~~~g~~~~-~~~~g~~i~~~i~g~l~~~~g~--~~~~~~~~~~~~~~~~  536 (559)
                      ++.......... .-++.|    -+|++..+...+...+ .+.+.++++..+...+.+..|.  ..+|.....+.+++.+
T Consensus       131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~  210 (354)
T PF05631_consen  131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV  210 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            332222222111 112333    2465656666665553 3444555666666666776654  6788888888888887


Q ss_pred             HHHhhccCCCCC
Q 008615          537 FIVRTVPETKGL  548 (559)
Q Consensus       537 ~~~~~~~~~~~~  548 (559)
                      ++...-+|..+.
T Consensus       211 ~I~~~W~ENyg~  222 (354)
T PF05631_consen  211 LILKTWPENYGD  222 (354)
T ss_pred             HHHhcccccCCC
Confidence            766666665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.31  E-value=1.1e-05  Score=66.67  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCc
Q 008615          148 VVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPS  227 (559)
Q Consensus       148 ~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  227 (559)
                      -.++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++....++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3445556677888888999999999999999999988554443 556788899999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          228 QIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       228 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      ++|++..+++......+.++|.++...+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988876654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11462 putative transporter; Provisional

Probab=98.30  E-value=1.9e-05  Score=79.72  Aligned_cols=166  Identities=16%  Similarity=0.094  Sum_probs=101.8

Q ss_pred             HHHhHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchhh-hhHHHHHHHHHHHHHHHHhhcC
Q 008615          379 VLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLI-GGVCGIALSLLLLSAYYKILGG  452 (559)
Q Consensus       379 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  452 (559)
                      +..|+..++. ..|.++ ..++.+..+.-+...+.-++.|+++||    +|||+..+ ++.+..++++.++.........
T Consensus        28 ~~~~l~~fyt~~~Gl~~-~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~  106 (460)
T PRK11462         28 VMLYMMFFYTDIFGIPA-GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMN  106 (460)
T ss_pred             HHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcc
Confidence            4445555544 467776 788999999999999999999999997    57766554 4555666555443321100011


Q ss_pred             c-hhHHHHHHHHHHHHhhcccccccceeecccCC-ccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-------chhh
Q 008615          453 F-PLVAVSALLLYVGCYQISFGPISWLMVSEIFP-LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-------AENI  523 (559)
Q Consensus       453 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-------~~~~  523 (559)
                      . ..+..+..+++..++.....|.. ++..|+.+ +++|.+..++-.....+|..+++.+..++....|       |...
T Consensus       107 ~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~  185 (460)
T PRK11462        107 GKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG  185 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence            1 12222333333344444333433 66667665 7889999999999999988888888777666544       3334


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCC
Q 008615          524 FLLFAAIAFLAVLFIVRTVPETK  546 (559)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~  546 (559)
                      ..+++++.+++.++++...+|+.
T Consensus       186 ~~i~~ii~~i~~~i~~~~~kE~~  208 (460)
T PRK11462        186 IAVLSVVAFMMLAFCFFTTKERV  208 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcceecc
Confidence            44555555555555555555543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.24  E-value=0.003  Score=63.10  Aligned_cols=117  Identities=14%  Similarity=0.046  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc---------h----------------
Q 008615          141 SAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------P----------------  194 (559)
Q Consensus       141 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~----------------  194 (559)
                      .++.+..+-....+ +..+...+..+++++++|.+++-+....+.....++++.         +                
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            45566666665555 456668889999999999999887777776666666552         0                


Q ss_pred             ------hHhHHHHHHHHHHhhhhhhhh-hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccC
Q 008615          195 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN  257 (559)
Q Consensus       195 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~  257 (559)
                            +.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  112223333333333333333 457788999999999999999999999999999988887766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.18  E-value=6.3e-05  Score=73.77  Aligned_cols=108  Identities=20%  Similarity=0.327  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhch---h------HhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcc---cchhhhhHHHHHH
Q 008615          174 RELIIAAVLYALGALTTAYAP---G------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFI  241 (559)
Q Consensus       174 ~~~~~~~~~~~i~~~~~~~~~---~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  241 (559)
                      |.++++.+++.+|.++..++.   +      .+.++++.++.++|.|..-|...++++|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            577888889999998855432   2      367899999999999999999999999999875   4667888999999


Q ss_pred             HHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          242 VLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       242 ~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      ++|..++..+.+++-++. +|.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHh
Confidence            999999999999988777 9999999999888877666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.17  E-value=2.5e-06  Score=81.01  Aligned_cols=130  Identities=17%  Similarity=0.165  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchh-H-------hHHHHHHHHHHhhhhhhhhhhhhhhhccCC
Q 008615          155 GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG-L-------GVLLVGRLLYGLGIGLAMHGAPLYIAETCP  226 (559)
Q Consensus       155 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~-------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  226 (559)
                      ++..+-.+...+.|+.|||++.+.|.+++++..+..+...| .       ..+.+..++.-+|   -......+-+|.+|
T Consensus       360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FP  436 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFP  436 (538)
T ss_pred             ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhch
Confidence            34446667778999999999999999999999999988766 1       1222223333333   22344556689999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHhhhcccC-----CCCcchHHHhhhHHHHHHHHHHhhccCCchH
Q 008615          227 SQIRGTLISLKELFIVLGILLGYFVGSFQIN-----AVGGWRYMYGLSAPLALLMGIGMWSLPPSPR  288 (559)
Q Consensus       227 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~  288 (559)
                      .+-|+..-|+..+..-+|.++|...-.++.+     .. +-|+.|++.+.+.++..+..+++||+.+
T Consensus       437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence            9999999999999999999999999888877     44 8899999999999999998899998754

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.17  E-value=3.2e-05  Score=75.72  Aligned_cols=160  Identities=12%  Similarity=-0.012  Sum_probs=108.3

Q ss_pred             HHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008615          385 PILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL  461 (559)
Q Consensus       385 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (559)
                      .|+++  .+-+. ...|++.....++.+++.++.|+...|.+. |+.++.+.+++.++.++........+. ...++...
T Consensus        59 pYl~~lD~~A~~-~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~-~~y~mL~~  136 (488)
T KOG2325|consen   59 PYLQKLDPTATA-TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG-VKYLMLVA  136 (488)
T ss_pred             hhhhhcCCCCCc-chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHH
Confidence            45555  44444 678999999999999999999999999886 888888999999998888554433222 22222222


Q ss_pred             HHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH---h---------c-CchhhHHHHH
Q 008615          462 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---L---------L-GAENIFLLFA  528 (559)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~---~---------~-g~~~~~~~~~  528 (559)
                      -++ .+.+.+.....-.|+++..-.+.|.++++..+....+|..+||.+...+..   .         + -|..+-++.+
T Consensus       137 R~l-~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~  215 (488)
T KOG2325|consen  137 RIL-TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMA  215 (488)
T ss_pred             HHH-cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHH
Confidence            222 223333344566888887777888888888887777777777765433321   0         1 1455677788


Q ss_pred             HHHHHHHHHHHhhccCCCC
Q 008615          529 AIAFLAVLFIVRTVPETKG  547 (559)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~  547 (559)
                      ++.++..+++.++.+|..+
T Consensus       216 i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  216 ILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHHHHHhheeeccc
Confidence            8888888888877776543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.17  E-value=3.2e-08  Score=100.18  Aligned_cols=145  Identities=18%  Similarity=0.065  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccccccc
Q 008615          397 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS  476 (559)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (559)
                      ..++......++.++|.++.|+++||+|||+.+..+.++..++.++..+...   ..++..+...-++.|...++..+..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---YNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccc
Confidence            4577888888999999999999999999999999999998888877775310   1133344444444455545555666


Q ss_pred             ceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh---cCchhhHHHHHHHHHHHHHHHHhhccCC
Q 008615          477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL---LGAENIFLLFAAIAFLAVLFIVRTVPET  545 (559)
Q Consensus       477 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (559)
                      ..++.|..|++.|+...++.+....+|..++..+.-.+.+.   .+|+..+.+.++..++..+ ...+.||.
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES  194 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            78999999999999999999888877777666654333222   2366666665555544333 33455654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.13  E-value=6.9e-05  Score=72.45  Aligned_cols=141  Identities=17%  Similarity=0.073  Sum_probs=80.3

Q ss_pred             HHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhchHHHHHH-HHH
Q 008615          108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AAV  181 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~~~~~-~~~  181 (559)
                      +-.++.|.-.+.....+|.+.++..     -++|.+|.|...-+ ...+. .-++|.++.|     |+||||..++ .-.
T Consensus         7 ~LY~lQGiP~GL~~gsiPflL~~~~-----~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~   79 (544)
T PF13000_consen    7 LLYFLQGIPLGLAFGSIPFLLQSMA-----KKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQY   79 (544)
T ss_pred             HHHHHcCcccccccccchhhhcccc-----CCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHH
Confidence            3457777777776556666655411     25677777654321 12222 3456777776     8999986543 223


Q ss_pred             HHHHHHHHHHhch----------------------h--HhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHH
Q 008615          182 LYALGALTTAYAP----------------------G--LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLK  237 (559)
Q Consensus       182 ~~~i~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~  237 (559)
                      +.++..+..+..-                      +  ...+...-++.=+-++.--.++-.+.-....+++++.+..-.
T Consensus        80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq  159 (544)
T PF13000_consen   80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ  159 (544)
T ss_pred             HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence            3333333322211                      1  112223333344444545556666777777888888888888


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 008615          238 ELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       238 ~~~~~~G~~~g~~l~~~l  255 (559)
                      ..+.++|..++..+.-.+
T Consensus       160 tvG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  160 TVGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhHhhhhHHHHHHHHHhh
Confidence            888888888877665444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.07  E-value=0.0025  Score=61.93  Aligned_cols=119  Identities=13%  Similarity=0.026  Sum_probs=89.0

Q ss_pred             cchhHHHHHHHHHHH-HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch---------h--------------
Q 008615          140 LSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---------G--------------  195 (559)
Q Consensus       140 ~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---------~--------------  195 (559)
                      ..+..+.++-+...+ +..+..++.+++.+++-+.+++-+-+..+....+++++.-         +              
T Consensus        58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~  137 (509)
T COG3202          58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF  137 (509)
T ss_pred             CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence            356677888888888 7889999999999999999999888887777777777530         1              


Q ss_pred             ---------HhHHHHHHHHHHhhhhhhhh-hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCC
Q 008615          196 ---------LGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA  258 (559)
Q Consensus       196 ---------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  258 (559)
                               .|..-+.-++.-+-...... .-.....|.+..+|-.|..+++..+.+++..++..+..++.+.
T Consensus       138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                     13333333333333333333 4456778999999999999999999999999999998887664

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.02  E-value=0.00023  Score=73.97  Aligned_cols=153  Identities=18%  Similarity=0.071  Sum_probs=99.1

Q ss_pred             HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHH
Q 008615          387 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG--FPLVAVSALLL  463 (559)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  463 (559)
                      ....+++. ..+..+...+....-+..+++|+++|+ +|+++.+.++.++..++..++.+.......  .........+.
T Consensus        15 ~~~lg~~~-~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa   93 (654)
T TIGR00926        15 LNFLGFSE-STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA   93 (654)
T ss_pred             HHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence            34467776 455555555556666777888999996 689999998888888887777642110000  01111222223


Q ss_pred             HHHHhhcccccccceeecccCCcc---chhhHHHHHHHHHHHHHHHHHHhhHHHHHhc-------CchhhHHHHHHHHHH
Q 008615          464 YVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELL-------GAENIFLLFAAIAFL  533 (559)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-------g~~~~~~~~~~~~~~  533 (559)
                      +..++..+.-|...+...|.++++   .+-....+.....++|+.+++.+.+.+.+..       +|...|.+.+++.++
T Consensus        94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~i  173 (654)
T TIGR00926        94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMIL  173 (654)
T ss_pred             HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Confidence            333333444455557777777643   3667788888889999999999999887553       477778777777777


Q ss_pred             HHHHHHh
Q 008615          534 AVLFIVR  540 (559)
Q Consensus       534 ~~~~~~~  540 (559)
                      +.++...
T Consensus       174 a~lvf~~  180 (654)
T TIGR00926       174 ALIVFMA  180 (654)
T ss_pred             HHHHHHH
Confidence            7665443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=98.00  E-value=0.0034  Score=59.99  Aligned_cols=89  Identities=17%  Similarity=0.031  Sum_probs=48.7

Q ss_pred             hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHh---hhcccCCC-CcchHHHhhhH
Q 008615          195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV---GSFQINAV-GGWRYMYGLSA  270 (559)
Q Consensus       195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l---~~~l~~~~-~~wr~~f~~~~  270 (559)
                      .|...++.-++.+++.|..........++ +|++.-...++    +.++++++..++   .....+.. .+=-.-|.+..
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~  190 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRILTKAAFSDSRTSALIYFITST  190 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence            46667777888899888887777776665 56654333333    333333333322   22222221 12223355555


Q ss_pred             HHHHHHHHHhhccCCchH
Q 008615          271 PLALLMGIGMWSLPPSPR  288 (559)
Q Consensus       271 ~~~~~~~~~~~~~~e~p~  288 (559)
                      ++.++++++...+|..|-
T Consensus       191 ~~~llC~i~y~~l~~lpf  208 (406)
T KOG1479|consen  191 VILLLCFVLYLVLPKLPF  208 (406)
T ss_pred             HHHHHHHHHHHHhhcchH
Confidence            566666666666777663

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.89  E-value=4.2e-05  Score=54.82  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY  183 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  183 (559)
                      .|+++.|+|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus        30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            7999999999999999999999999999999999998887766544

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.73  E-value=0.00022  Score=51.15  Aligned_cols=65  Identities=14%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             HHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHH
Q 008615          369 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC  434 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  434 (559)
                      ++..+++...+.-|.+.++++.|++. .+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            33444445567788999999999998 899999999999999999999999999999988765543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.54  E-value=0.0011  Score=58.87  Aligned_cols=56  Identities=9%  Similarity=0.119  Sum_probs=37.6

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhhhcccC----CCCcchHHHhhhHHHHHHHHHHhhcc
Q 008615          228 QIRGTLISLKELFIVLGILLGYFVGSFQIN----AVGGWRYMYGLSAPLALLMGIGMWSL  283 (559)
Q Consensus       228 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----~~~~wr~~f~~~~~~~~~~~~~~~~~  283 (559)
                      |+|+....+...+.++|.++.-+.--.-.+    ...+|++.+.+.+++.++.+++...+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567777777788888888876544222100    11279999999988887776666544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.54  E-value=0.0014  Score=62.77  Aligned_cols=122  Identities=15%  Similarity=0.011  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH--HHHHHHHHHHHhhcccc
Q 008615          396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV--AVSALLLYVGCYQISFG  473 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  473 (559)
                      ..+-+...++.+..++..+.+-|+.||+|-|....++..+.+++..+=.......-.+...  +....-...+.......
T Consensus        79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim  158 (480)
T KOG2563|consen   79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL  158 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence            6777888889999999999999999999999999999998888877655433211111111  11111111111111111


Q ss_pred             cccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008615          474 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL  517 (559)
Q Consensus       474 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  517 (559)
                      .+..-+..--+|+++|+.+..+..+.+.+|.+++..+-..+..+
T Consensus       159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            12212334458999999999999999999988888777666544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.46  E-value=0.0026  Score=61.29  Aligned_cols=111  Identities=17%  Similarity=0.114  Sum_probs=82.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH--HHHH---HHHHHHhchhHhHHHHHHHHHHhhhhhhhh
Q 008615          141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV--LYAL---GALTTAYAPGLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       141 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~--~~~i---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      -..+..+...+|.+|-.++.--...+  |+  |++.+...+  +..+   ...+.-+.++.|.+++.-+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            46788888888888776664432221  33  333333222  2222   222333467899999999999999999999


Q ss_pred             hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      .....+.|-.++++|..+++....+-++|..++.+++-.+
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988764

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.43  E-value=0.0017  Score=64.72  Aligned_cols=156  Identities=22%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          384 GPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-----RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      +.+.++++.++ .+...+.....+.. ...++.|.++|-+.     ||+.++++.++..++.+.++..... ........
T Consensus        14 ~~l~~~l~ls~-~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-~~s~~~~~   90 (433)
T PF03092_consen   14 PFLKDDLGLSP-AQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-ESSAAIAV   90 (433)
T ss_pred             HHHHHHcCCCH-HHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-cchhhhHH
Confidence            34456678876 45555555444433 44678899999862     3444555555554444444432211 11122222


Q ss_pred             HHHHHHHHHhhcccccccceeecccC---CccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHH
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIF---PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV  535 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  535 (559)
                      +.+++...+... .-.+.-++..|..   |.+ +|...+....+..+|+.++..+.|.+.+..+++..|.+.+.+..+..
T Consensus        91 ~~l~la~~g~a~-~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   91 VLLFLASFGYAF-ADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHH-HHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            222222222222 1223345555654   333 78888888889999999999999999999999999988888877776


Q ss_pred             HHHHhhccC
Q 008615          536 LFIVRTVPE  544 (559)
Q Consensus       536 ~~~~~~~~~  544 (559)
                      +..+++.+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence            666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK03612 spermidine synthase; Provisional

Probab=97.36  E-value=0.0073  Score=61.46  Aligned_cols=136  Identities=23%  Similarity=0.168  Sum_probs=83.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH-HHHHHH-HHHHHH----HhchhH-hHHHHHHHHHHhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYA-LGALTT----AYAPGL-GVLLVGRLLYGLGI  210 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~~  210 (559)
                      +|.+..+.+.+.+++++|.++|+.+++++.++.-++...+- ++.+.+ ++..+.    ++...+ ..++...++.|+..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999988754333332211 111111 111111    111111 12233456678888


Q ss_pred             hhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccC-CCCcchHHHhhhHHHHHH
Q 008615          211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-AVGGWRYMYGLSAPLALL  275 (559)
Q Consensus       211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~~wr~~f~~~~~~~~~  275 (559)
                      |...|....+..+.. .++-+...|-......+|.++|.++.++++- .. |-....++.+.+.++
T Consensus       125 G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l-G~~~t~~~~a~l~~~  188 (521)
T PRK03612        125 GMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL-GLIRTAALTGSLNLL  188 (521)
T ss_pred             HHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            888888777665533 2235677888899999999999999887654 44 544333344444433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.28  E-value=0.0052  Score=50.96  Aligned_cols=108  Identities=13%  Similarity=-0.057  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccccccccee
Q 008615          400 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM  479 (559)
Q Consensus       400 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (559)
                      .-..+......+..++.+.+.+++|.|+.++++.++..+-......      .+.+..+....+.+.+.+.. ....-.+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~l-W~aqg~y  113 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALL-WTAQGTY  113 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHh-hHhhhHH
Confidence            3444555666777888899999999999999988877765544432      22344444444444444333 3344467


Q ss_pred             ecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 008615          480 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL  514 (559)
Q Consensus       480 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l  514 (559)
                      +.+...++.+++..++.-.+...+.++|..+.-.+
T Consensus       114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888899988888887777777766654333

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.16  E-value=6.8e-05  Score=76.31  Aligned_cols=175  Identities=14%  Similarity=0.017  Sum_probs=1.3

Q ss_pred             HHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHH
Q 008615          367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY  446 (559)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  446 (559)
                      +..+.+......+..-+..+-+++++++ .+.|++....-++.++..++..++.+|..|-+.+-.+.++++++.+++.+=
T Consensus        10 ~~~~~q~~~~g~~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP   88 (539)
T PF03137_consen   10 LLGLFQMMVSGYVNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence            3333344433445555566667788888 899999999999999999999999999888888888888888888777531


Q ss_pred             HHhhc-----------------------------------------Cc---hhHHHHHHHHHHHHhhcccccccceeecc
Q 008615          447 YKILG-----------------------------------------GF---PLVAVSALLLYVGCYQISFGPISWLMVSE  482 (559)
Q Consensus       447 ~~~~~-----------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (559)
                      ....+                                         ..   .+..+++.-++.|.......++..+|+-|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence            10000                                         00   01122222233344444455677799999


Q ss_pred             cCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh---------------------cC-chhhHHHHHHHHHHHHHHHHh
Q 008615          483 IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL---------------------LG-AENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       483 ~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      .++++..+...|+..+...+|-++|-.+.+.....                     .| |+..|++.+.+.++..+..+.
T Consensus       169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999998888877776666654421                     23 445566666666666655444


Q ss_pred             hc
Q 008615          541 TV  542 (559)
Q Consensus       541 ~~  542 (559)
                      +.
T Consensus       249 FP  250 (539)
T PF03137_consen  249 FP  250 (539)
T ss_dssp             --
T ss_pred             CC
Confidence            43

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.07  E-value=0.0078  Score=62.17  Aligned_cols=185  Identities=14%  Similarity=-0.002  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHH
Q 008615          359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL  438 (559)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  438 (559)
                      +.++++..+..+.+......+..-+..+-+++++++ .+.|++...+-++.++...+..+..-|.-|-+++-++.+++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~S-s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISS-SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC-CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            344555555555554444445555556666788887 6799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh----------------c---------------------------Cc---hhHHHHHHHHHHHHhhccc
Q 008615          439 SLLLLSAYYKIL----------------G---------------------------GF---PLVAVSALLLYVGCYQISF  472 (559)
Q Consensus       439 ~~~~~~~~~~~~----------------~---------------------------~~---~~~~~~~~~~~~~~~~~~~  472 (559)
                      +.++..+--...                .                           ..   .+.++++.-++.|.+....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            888876421000                0                           00   2223333344445555555


Q ss_pred             ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh------------------cC-chhhHHHHHHHHHH
Q 008615          473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL------------------LG-AENIFLLFAAIAFL  533 (559)
Q Consensus       473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~------------------~g-~~~~~~~~~~~~~~  533 (559)
                      .++..+|+.|-+.++......|+..++..+|-++|-.+.+.+...                  .| |+..|++.+.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            677778999999999999999999998888877777777665431                  23 44567777777777


Q ss_pred             HHHHHHhhccC
Q 008615          534 AVLFIVRTVPE  544 (559)
Q Consensus       534 ~~~~~~~~~~~  544 (559)
                      ..+.++++-++
T Consensus       335 ~a~p~f~fPk~  345 (735)
T KOG3626|consen  335 SAVPLFFFPKE  345 (735)
T ss_pred             HHHHHHhCccc
Confidence            77765554433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.07  E-value=0.038  Score=55.13  Aligned_cols=121  Identities=10%  Similarity=0.009  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCc---------------------
Q 008615          396 ADATRVSVVIGVFKLVM-TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF---------------------  453 (559)
Q Consensus       396 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  453 (559)
                      +...++.+...+...+. .++.+++++|++|+++...........++++++......+.                     
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            34444544444444444 78889999999999988776666666655555442211111                     


Q ss_pred             ----hhHHHHHHHHHHHHhhccccc-ccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008615          454 ----PLVAVSALLLYVGCYQISFGP-ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE  516 (559)
Q Consensus       454 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  516 (559)
                          ..+....+.+..-.++....+ +.|.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                011122222333333333333 778999999999999999999999999999999998887763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.97  E-value=0.00071  Score=61.00  Aligned_cols=136  Identities=14%  Similarity=0.050  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 008615          145 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET  224 (559)
Q Consensus       145 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  224 (559)
                      .|.+.-+-.+...+..+.+....||+.--.=..+..++.+.+.++.+++++.++=+++-.+..++.|.....-.++-+. 
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence            4455555566667777777788888654333344556677888899999999999999999999888777665554333 


Q ss_pred             CCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC-CcchHHHhhhHHHHHHHHHHhhccCC
Q 008615          225 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPP  285 (559)
Q Consensus       225 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e  285 (559)
                      ++    ....+.+..+.+..+++|..--..+.+.. ..-|...++...+.++.....+++-+
T Consensus       143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~  200 (409)
T KOG3880|consen  143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK  200 (409)
T ss_pred             CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence            33    23455666666666666666555554421 15677777766666665555554433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.81  E-value=0.00025  Score=67.23  Aligned_cols=112  Identities=9%  Similarity=-0.162  Sum_probs=2.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc-------CchhHHHHHHHHHHHHhhccc
Q 008615          400 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-------GFPLVAVSALLLYVGCYQISF  472 (559)
Q Consensus       400 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  472 (559)
                      .....++++..+|+.+.++..-+..+++.+.+..++=.+..-++..+...+.       -.+-+..+.+.+..++.++..
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            4566788999999998887432211333333322222222222222211100       011122333444455555555


Q ss_pred             ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      ......+..+..++++|..+..+...+-..|-.+|..+.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666677888888888888887777777777766666543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.71  E-value=0.049  Score=51.45  Aligned_cols=148  Identities=23%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             HHHhHHHHHHHcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHH
Q 008615          379 VLYYAGPILQSAGFSAA-ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA  457 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      .....+.+..+.+.... ...+.......+...++.++.|++.||.|||+.+..+.....++.+...+.    .......
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   96 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----PNVGLAL   96 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----ccchHHH
Confidence            33455555555555432 257788888888888888999999999999977776665433332222221    1112222


Q ss_pred             HHHHHHHHHHhhcccccccceeecccCCc-cchhhHHHHHHH-HHHHHHHHHHHhhHHHHHh--cCchhhHHHHHHH
Q 008615          458 VSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGISLAVL-TNFGSNAIVTFAFSPLKEL--LGAENIFLLFAAI  530 (559)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~i~g~l~~~--~g~~~~~~~~~~~  530 (559)
                      +.......+.......+....+..|.+|. +.++...+.... ...++..+++.+.+.+...  .+|...+......
T Consensus        97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477          97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            22222223333334455666888888887 578888888887 5777778888666666554  3455544443333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.11  Score=51.30  Aligned_cols=101  Identities=19%  Similarity=0.299  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhhh---hhchHHHHHHHHHHHHHHHHHHHhc------------------hhHhHHHHHHHHHHhhhh
Q 008615          153 LYGALLGSILVYSIAD---FLGRKRELIIAAVLYALGALTTAYA------------------PGLGVLLVGRLLYGLGIG  211 (559)
Q Consensus       153 ~l~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~g  211 (559)
                      .+|..++..+.+.+.+   ++||++.+.++..+..++.++.-+.                  +++...++.-++.|++.+
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~  368 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA  368 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence            3444555555666664   6899999999999988888877653                  135577778899999999


Q ss_pred             hhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhc
Q 008615          212 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF  254 (559)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  254 (559)
                      ......+.++.+.+ +++|..+.++...-..++..++......
T Consensus       369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999 5678888888887777777665554443

>PRK03612 spermidine synthase; Provisional

Probab=96.42  E-value=0.095  Score=53.49  Aligned_cols=50  Identities=20%  Similarity=0.251  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhHHHHH-hcCchhhHHHHHHHHHHHHHHH
Q 008615          489 RGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVLFI  538 (559)
Q Consensus       489 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~~  538 (559)
                      .+...|-....+.+|+++|+.+.+.+.- ..|.....++.+.+.++.+++.
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            4667788888999999999999887765 6787666666666655554433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.38  E-value=0.19  Score=48.81  Aligned_cols=133  Identities=12%  Similarity=0.080  Sum_probs=82.7

Q ss_pred             HHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHH
Q 008615          380 LYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV  458 (559)
Q Consensus       380 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      .+..|++.+. .+++..+...-+.-...-..++..+....+.|.++.|++++.+.+...+...++.+.      .....+
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------~sv~~m   97 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------TSVLAM   97 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------CcHHHH
Confidence            3344444444 566663333333333344456666777788999999999998887777766666542      233333


Q ss_pred             HHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 008615          459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG  519 (559)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g  519 (559)
                      -..-++.|..... -...++++=..+|+++.-++.+...+...+|..++..++-.+....+
T Consensus        98 q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~  157 (412)
T PF01770_consen   98 QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG  157 (412)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333333333322 22334566666788888899999999888888888887776666433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.07  E-value=0.18  Score=49.75  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHh------ch----hHhHHHHHHHHHH
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------AP----GLGVLLVGRLLYG  207 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~----~~~~l~~~r~l~G  207 (559)
                      -|+++..+|.+-+...+....+.+...++.+|+|..|.=++++..-.++..++..      .+    +...++.+-++.=
T Consensus       288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR  367 (432)
T PF06963_consen  288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR  367 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999988877776654433333322      12    3334444444444


Q ss_pred             hhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      +|.=..-....-++.|..|+++||...|...+..++-.++-..++-.+
T Consensus       368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            454445666777899999999999999999999999888887776654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.97  E-value=0.053  Score=39.34  Aligned_cols=67  Identities=18%  Similarity=0.037  Sum_probs=58.2

Q ss_pred             HHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHH
Q 008615          379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY  446 (559)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  446 (559)
                      +.-.+|...++.+++. .+++++.+...++.++|.+...++.++..+++.+..+.+...+..+.+.+.
T Consensus        11 yTplLP~M~~~~~ls~-~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSL-SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHhHhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557788888888888 899999999999999999999999999888888888888888888877753

Note that many members are hypothetical proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.82  E-value=0.043  Score=53.82  Aligned_cols=113  Identities=11%  Similarity=-0.091  Sum_probs=74.3

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhcC----chhHHHHHHHHHHHHhhcccccccceeecccCCcc---chhhHHHHHHHH
Q 008615          427 PLLIGGVCGIALSLLLLSAYYKILGG----FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLT  499 (559)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~  499 (559)
                      +.+.++.++..++.+++.+.......    ......+.+. +.+.+.++.=|....+..|.++++   .+..........
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~-lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLA-LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHH-HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHH-HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            45666777777777775544321111    1122222232 334444455566667788888755   466677788888


Q ss_pred             HHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHh
Q 008615          500 NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       500 ~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (559)
                      .++|+.++..+.+++.++.||...|.+.++..+++.+..+.
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988888877775444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.67  E-value=0.014  Score=56.34  Aligned_cols=150  Identities=18%  Similarity=0.074  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchhhhh-HH
Q 008615          360 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLIGG-VC  434 (559)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~-~~  434 (559)
                      .++....+....++. +..=..|.+.|++..|... ...+.......+.+++..++.|..+||    +||||..+.. ..
T Consensus        33 ~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvph-k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQFG-WALELSYLTPYLQSLGVPH-KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCc-ccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            333333343444433 2245567888889999887 667777777778888889999999997    7888776654 44


Q ss_pred             HHHHHHHHHHHHHHhh----cC-ch----h---HHHHHHHHHHHHhhcccccccceeecccCCccchhh-HHHHHHHHHH
Q 008615          435 GIALSLLLLSAYYKIL----GG-FP----L---VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR-GISLAVLTNF  501 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~----~~-~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~  501 (559)
                      ...++++++++.....    .+ ..    .   ..++.+.++-........|.- ++..|+..++.+.+ +++....+..
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a  189 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA  189 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence            4555555554332110    01 11    1   111222222233334444544 77888887777777 8888888888


Q ss_pred             HHHHHHHHhhH
Q 008615          502 GSNAIVTFAFS  512 (559)
Q Consensus       502 ~g~~i~~~i~g  512 (559)
                      +|+.+|-.+.+
T Consensus       190 vGnvLGY~~g~  200 (498)
T KOG0637|consen  190 VGNVLGYALGS  200 (498)
T ss_pred             hcceeeeeccc
Confidence            88776665554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.19  E-value=0.84  Score=45.55  Aligned_cols=110  Identities=18%  Similarity=0.176  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhchH--HHHHHH--HHHHHHHHHHHHh---------chhHhHHHHHHHHHHhhh
Q 008615          144 QLGLVVSGSLYGALLGSILVYSIADFLGRK--RELIIA--AVLYALGALTTAY---------APGLGVLLVGRLLYGLGI  210 (559)
Q Consensus       144 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~--~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~  210 (559)
                      ..-.+..+|.++-.+|..+..+.. .-++|  ++++.+  =+++.-..++|..         -++-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            445566677777777776554321 11222  333222  2233333344432         246677788899999999


Q ss_pred             hhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhc
Q 008615          211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF  254 (559)
Q Consensus       211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  254 (559)
                      |-....+..+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887654

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.98  E-value=3.1  Score=38.82  Aligned_cols=73  Identities=21%  Similarity=0.348  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCC
Q 008615          153 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP  226 (559)
Q Consensus       153 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  226 (559)
                      .+..+..+++.+.+.+++|-|+.+.++...+... +..=+-+.|..++..-.+.|++.+..+..--+++++.-.
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3444556666669999999999999988877542 223345678899999999999999998887777766543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.45  E-value=1.6  Score=45.01  Aligned_cols=159  Identities=14%  Similarity=0.095  Sum_probs=98.3

Q ss_pred             HHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhhcC------
Q 008615          380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG------  452 (559)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  452 (559)
                      .....++...++... ..+.-.............+++++++|- +||.+.+.++.++..++..++.+.......      
T Consensus        58 ~nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   58 SNLVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             hHHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            334444445556555 444445555555666777889999996 588888888888777776666554432210      


Q ss_pred             --------c--h---hHHHHHHHHHHHHhhcccccccceeecccCC----ccchh--hHHHHHHHHHHHHHHHHHHhhHH
Q 008615          453 --------F--P---LVAVSALLLYVGCYQISFGPISWLMVSEIFP----LRTRG--RGISLAVLTNFGSNAIVTFAFSP  513 (559)
Q Consensus       453 --------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~i~~~i~g~  513 (559)
                              .  .   ...+.........+.++.-|...++-+|-++    .+.+.  .-+.......++|..++..+.-+
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence                    0  0   1112222222222334444555566677666    22223  55666777788888888888888


Q ss_pred             HHHhcCchhhHHHHHHHHHHHHHHHH
Q 008615          514 LKELLGAENIFLLFAAIAFLAVLFIV  539 (559)
Q Consensus       514 l~~~~g~~~~~~~~~~~~~~~~~~~~  539 (559)
                      +.+..||...|.+..++.+++.++.+
T Consensus       217 iq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  217 IQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hhhcccceeeccHHHHHHHHHHHHHH
Confidence            88889998888888877777766544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.14  E-value=0.11  Score=46.57  Aligned_cols=156  Identities=15%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 008615          385 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLY  464 (559)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (559)
                      ++++..|+.. .+.+.++.......++...+.|-++||.|||+.-+...+...++++.=       ....+.++..--+.
T Consensus        62 yLYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-------hSpqYkVLmVGR~L  133 (454)
T KOG4332|consen   62 YLYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-------HSPQYKVLMVGRVL  133 (454)
T ss_pred             eeehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-------cCCceEEEeehhhh
Confidence            3456667776 566666666666667777788899999999987665444444443321       11111111111111


Q ss_pred             HHHhh-cccccccceeecccC-----CccchhhHHHHHH-HHHHHHHHHHHHhhHHHHHhcC--chhhHHHHHHHHHHHH
Q 008615          465 VGCYQ-ISFGPISWLMVSEIF-----PLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAV  535 (559)
Q Consensus       465 ~~~~~-~~~~~~~~~~~~~~~-----p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~  535 (559)
                      +|... ..+...-.-++.|..     |.+......+=.. ..+.+.++++......+.|.++  .-.+|-..+.+..++.
T Consensus       134 GGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm  213 (454)
T KOG4332|consen  134 GGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM  213 (454)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            11111 111111112344543     3333333333333 2244455566666666677665  4455655555555555


Q ss_pred             HHHHhhccCCCCC
Q 008615          536 LFIVRTVPETKGL  548 (559)
Q Consensus       536 ~~~~~~~~~~~~~  548 (559)
                      .+.+.---|..++
T Consensus       214 Avil~~W~ENygd  226 (454)
T KOG4332|consen  214 AVILSSWSENYGD  226 (454)
T ss_pred             HHHHhhhhhccCC
Confidence            5444433444443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=92.99  E-value=2.3  Score=39.88  Aligned_cols=116  Identities=22%  Similarity=0.136  Sum_probs=73.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH-------HHHHHHh--chhHhHHHHHHHHHHh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL-------GALTTAY--APGLGVLLVGRLLYGL  208 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i-------~~~~~~~--~~~~~~l~~~r~l~G~  208 (559)
                      +|-.-.|.+.+.+.|.+.+++|+...-++.|.--.-+.+..-+++..+       ..+.+++  .++-+.++++-++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            455677889999999999999999998888754333222222222211       1112222  3467788888999999


Q ss_pred             hhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          209 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       209 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      -.|...|..+.++..-.  .+-....+.....-.+|...+.++-.++
T Consensus       118 LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~l  162 (508)
T COG4262         118 LVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFL  162 (508)
T ss_pred             HHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHH
Confidence            99999999999887622  1112222333333666666666655554

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.05  E-value=0.9  Score=42.98  Aligned_cols=121  Identities=18%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH------Hhc------hhHhHHHHHHHHHHhhhhhh--hhhh--
Q 008615          154 YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT------AYA------PGLGVLLVGRLLYGLGIGLA--MHGA--  217 (559)
Q Consensus       154 l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~------~~~------~~~~~l~~~r~l~G~~~g~~--~~~~--  217 (559)
                      ....+..++.|...|+..|+|++...+.+.-++.+.+      .+.      .++..+..+-++.-..++..  ...+  
T Consensus        74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~  153 (503)
T KOG2601|consen   74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT  153 (503)
T ss_pred             hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            3556777888999999999999887766543332222      222      24554444444332222211  1111  


Q ss_pred             hhhhhccC----Ccccch---hhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHH
Q 008615          218 PLYIAETC----PSQIRG---TLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL  275 (559)
Q Consensus       218 ~~~i~~~~----~~~~r~---~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~  275 (559)
                      ..+-.||.    ..+.+.   ++.+..-..-..-..+.|.+.|.++... +-|..-.+.++..++
T Consensus       154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv-sl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV-SLRASAGTFAAWALV  217 (503)
T ss_pred             EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceee-chhhhhhhhHHHHHH
Confidence            11223443    222233   3335555566667788999988887766 777755555555444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.42  E-value=11  Score=36.77  Aligned_cols=54  Identities=2%  Similarity=-0.240  Sum_probs=27.8

Q ss_pred             HHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008615          369 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG  424 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  424 (559)
                      ........+.+..-.+++.++.-..+.  .-.+...+.+.+.+..++...+.-+..
T Consensus        27 GiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~   80 (406)
T KOG1479|consen   27 GIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLN   80 (406)
T ss_pred             hcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334445566666666666555442  445555555555555555554444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.21  E-value=2.9  Score=42.29  Aligned_cols=108  Identities=12%  Similarity=-0.007  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc----C----------------------chhHHHHHH
Q 008615          408 FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG----G----------------------FPLVAVSAL  461 (559)
Q Consensus       408 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------------~~~~~~~~~  461 (559)
                      +.++..++..++++++++.++..+........+.++++......    .                      ..|. ...+
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt-~slf  149 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWT-FSLF  149 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHH-HHHH
Confidence            34555677889999999998877666555555555554321100    0                      0111 1112


Q ss_pred             HHHHHHhhcc-cccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008615          462 LLYVGCYQIS-FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE  516 (559)
Q Consensus       462 ~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~  516 (559)
                      .+..-.++.. ..-+.|.+++|.++.++..+-.++.....++|..+++.+...+.+
T Consensus       150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222 223568899999999999999999999999999999998887777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=90.09  E-value=0.098  Score=49.66  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHH--HHHHHHHHHHHH----------hchhHhHHHHHHHHHHhhhhhh
Q 008615          147 LVVSGSLYGALLGSILVYSIADF-LGRKRELIIA--AVLYALGALTTA----------YAPGLGVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       147 ~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~--~~~~~i~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~  213 (559)
                      .+..+|.++-.+|..+.++.-=+ -.+|++.+.+  =+++.-..++|.          +.+|-+..++..++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            35667888888888877764211 1244444321  122222223331          2345577788899999999999


Q ss_pred             hhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhc
Q 008615          214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF  254 (559)
Q Consensus       214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  254 (559)
                      ......+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888888888888877654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.06  E-value=19  Score=36.01  Aligned_cols=122  Identities=12%  Similarity=-0.045  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhc---------------Cch-----
Q 008615          396 ADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG---------------GFP-----  454 (559)
Q Consensus       396 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-----  454 (559)
                      +....+-...-+ ++++..++..++.++..+.++...........+++++.......               ..+     
T Consensus        61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~  140 (509)
T COG3202          61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW  140 (509)
T ss_pred             hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence            344444444444 56777788889999999988887766666666666655432100               011     


Q ss_pred             -------hHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008615          455 -------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL  517 (559)
Q Consensus       455 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~  517 (559)
                             |.......+.-........-+.+..+.|....++..+-+++.+...+++..+++.+..++..+
T Consensus       141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                   222222222222222222335567889999999999999999999999999999988887663

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=88.75  E-value=5.9  Score=38.00  Aligned_cols=142  Identities=15%  Similarity=0.034  Sum_probs=61.9

Q ss_pred             HHHHHHhhChhhHHHhHHHHHHHcCCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhh-hHHHHHHHHHHH
Q 008615          367 LVLFQQITGQPSVLYYAGPILQSAGFSAAA--DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG-GVCGIALSLLLL  443 (559)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~~  443 (559)
                      +.+..+...+.... -.|.+++.-+.+-..  ......-++.+=-+-..++=....+|+|||+..++ +..+.+..+..+
T Consensus        38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL  116 (510)
T KOG3574|consen   38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL  116 (510)
T ss_pred             HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence            34444544444444 788888865554311  22223333323222222222233349999887654 444444444444


Q ss_pred             HHHHHh----hcCchhHHHH--HHHHHHHHhhcccc-cccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008615          444 SAYYKI----LGGFPLVAVS--ALLLYVGCYQISFG-PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF  511 (559)
Q Consensus       444 ~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~  511 (559)
                      ......    ....+.....  .++++.+..  ... .....+......++.-|-+..........|.+++..++
T Consensus       117 s~~v~~~~g~ng~~p~v~~lt~~f~LLnfla--AtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  117 SYLVDRGLGGNGGLPNVVALTLLFLLLNFLA--ATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hhCCCcccccCCCCcchHHHHHHHHHHHHHH--hhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            432110    0111111111  112222111  111 12223334445566666665555555666666665554

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=84.41  E-value=28  Score=30.69  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHH
Q 008615          233 LISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL  272 (559)
Q Consensus       233 ~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~  272 (559)
                      .-.......-++..+|..+++.+.+.. +. +..++.+++
T Consensus       163 ~~~~~~~~~i~~f~~Ga~~ga~l~~~~-~~-~al~~~~~~  200 (209)
T PF06912_consen  163 RRALRYLLIILSFFIGAILGALLYRRL-GF-WALLLPALL  200 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-HHHHHHHHH
Confidence            333444445555566666666655544 43 333333333

The function of this family is unknown although a few members are thought to be membrane proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.23  E-value=4  Score=37.82  Aligned_cols=118  Identities=16%  Similarity=0.080  Sum_probs=81.0

Q ss_pred             cccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhh
Q 008615          138 FNLS-AVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH  215 (559)
Q Consensus       138 ~~~s-~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  215 (559)
                      +.++ +.|.-|....|.+|..+..--.-..--++ ---.++-+--+++.+...+..+.++++..++.-+.-|+-.|..++
T Consensus       282 ~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV  361 (409)
T KOG3880|consen  282 FSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV  361 (409)
T ss_pred             CccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence            4444 34688888888887654322111110000 001112223344455556667789999999999999998888888


Q ss_pred             hhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008615          216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ  255 (559)
Q Consensus       216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  255 (559)
                      ...--+.+-.++++|-.+|+.....-++|..++.+++-.+
T Consensus       362 NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  362 NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            8887788778889999999999999999999988887654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=82.07  E-value=28  Score=31.66  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHH----HHHHHHHHHHHHHHh-c----hhHhHHHHHHHHHHhhhhhhh
Q 008615          145 LGLVVSGSLYGALLGSILVYSIADF-LGRKRELI----IAAVLYALGALTTAY-A----PGLGVLLVGRLLYGLGIGLAM  214 (559)
Q Consensus       145 ~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~  214 (559)
                      .....-++..|+.+|.+..|++... +.||+.+.    .+++++.+..++... .    .++..+++.-|+.|++.=+..
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445556677777888888888874 55665543    344455554444212 1    146678888888888764455


Q ss_pred             hhhhhhhhccCCcccchhhhhHHHHHHHHHHHHH
Q 008615          215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLG  248 (559)
Q Consensus       215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  248 (559)
                      ++...+--|+ +..++.+.--.++..+++|.++-
T Consensus       223 ~ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  223 GVILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence            5444433332 23333334444455566666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	559
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		8e-28

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 163/354 (46%), Gaps = 39/354 (11%)
Query: 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA-------VGGWRYMYGLS 269
           +P+YIAE  P+ IRG L+S  +  I+ G LL Y V  F   +         GWRYM+   
Sbjct: 147 SPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE 206
Query: 270 APLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQI 329
              ALL    +               +GK      +EQA   L    R+  G+ L+ + +
Sbjct: 207 CIPALLF---LMLLYTVPESPRWLMSRGK------QEQAEGIL----RKIMGNTLATQAV 253
Query: 330 EDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS 389
           ++    +K S    +  G  L +F    +   +IG  L +FQQ  G   VLYYA  + ++
Sbjct: 254 QE----IKHSLDHGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306
Query: 390 AGFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-LIGGVCXXXXXXXXXXXXX 447
            G  A+ D A   ++++GV  L  T +A+  VD  GR+PL +IG +              
Sbjct: 307 LG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364
Query: 448 XXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507
               G  +VA+ ++L YV  + +S+GP+ W+++SEIFP   RG+ +++AV   + +N  V
Sbjct: 365 TQAPG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422
Query: 508 TFAF------SPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEIES 555
           ++ F      S L                         + VPETKG +LEE+E+
Sbjct: 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	559
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	5e-09
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	6e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	4e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
            N+    +  V+   L    +  +    I+D +GR+  +++   ++ L  L       L 
Sbjct: 30  LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89

Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
           VL+    + G+G G+    A     +           SL  + I++  LL   +G   ++
Sbjct: 90  VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG-LLD 148

Query: 258 AVGGWRYMYGLSAPLALLMGIGMW-----SLPPSPR 288
            +  WR  Y     L   +   M      + P    
Sbjct: 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 65/447 (14%), Positives = 137/447 (30%), Gaps = 52/447 (11%)

Query: 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 167
             G+ FGY          +L  P L        S   LG  +SG          ++ S++
Sbjct: 30  FLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSRGDLGFALSGISIAYGFSKFIMGSVS 86

Query: 168 DFLGRKRELIIAAVLYALGALTTAYAPG----LGVLLVGRLLYGLGIGLAMHGAPLYIAE 223
           D    +  L    +L A   L   + P     + V+ V   L G   G+        +  
Sbjct: 87  DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146

Query: 224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283
               + RG ++S+      +G  +   +    +     W     + A  A+L+ +  +++
Sbjct: 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206

Query: 284 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 343
                                +   +  + + +   P D   + + E T           
Sbjct: 207 MRDTP----------------QSCGLPPIEEYKNDYPDDYNEKAEQELT----------- 239

Query: 344 KSEGSFLEVFQGPNLKAFIIG---GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATR 400
             +     V     L    I      L+ +  +   P+ L       +   F+    ++ 
Sbjct: 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK------EVKHFA-LDKSSW 292

Query: 401 VSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 460
              +     +  T +     D + R      GV  + L  +    Y+    G P V +  
Sbjct: 293 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352

Query: 461 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN---AIVT-FAFSPLKE 516
           +++ +G        +  L   E+ P +  G   + A  T        ++          +
Sbjct: 353 MIV-IGFLIYGPVMLIGLHALELAPKKAAG---TAAGFTGLFGYLGGSVAASAIVGYTVD 408

Query: 517 LLGAENIFLLFAAIAFLAVLFIVRTVP 543
             G +  F++    + LAV+ ++  + 
Sbjct: 409 FFGWDGGFMVMIGGSILAVILLIVVMI 435

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 48/428 (11%), Positives = 121/428 (28%), Gaps = 64/428 (14%)

Query: 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI----IAAVLYALGALTTAYAPG 195
           +S    G++ +     +LL   L   ++D LG ++ L+       V++A   +       
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 196 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE--LFIVLGILLGYFVGS 253
              +LVG ++ G+ +G   +     +        R +        +F  +G  LG  +  
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 254 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 313
                   + +  G     AL++ + ++            A     +   +  +    L 
Sbjct: 160 IMFTINNQFVFWLGSGC--ALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217

Query: 314 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 373
           +  +                                            +   G+     +
Sbjct: 218 RQPKL---------------------------------------WFLSLYVIGVSCTYDV 238

Query: 374 TGQPSVLYYAGPILQSAGFSAAA--DATRVSVV--IGVFKLVMTWIAVAKVDDLGRRPLL 429
             Q    ++      +           T +  +    +       I    ++ +G +  L
Sbjct: 239 FDQQFANFFT-SFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLI----INRIGGKNAL 292

Query: 430 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 489
           +     +++ ++  S          L  V    L++           +  ++  F +R  
Sbjct: 293 LLAGTIMSVRIIGSS-----FATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFS 346

Query: 490 GRGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 548
                +        +   ++     + E +G +  +L+   +A    L  V T+     L
Sbjct: 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406

Query: 549 SLEEIESK 556
           SL   +  
Sbjct: 407 SLLRRQVN 414

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 66/418 (15%), Positives = 118/418 (28%), Gaps = 64/418 (15%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAP 194
           F L+  Q GL+ S   +G  +  I    +   L  K  +I    LYALGA      A   
Sbjct: 56  FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115

Query: 195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254
              + LVG  +   G+G     A  ++    P       ++L + F   G ++    G  
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175

Query: 255 QI------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQA 308
            I       +      M            +     P    ++++ A+             
Sbjct: 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP----YMIIVAI------------- 218

Query: 309 ISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 368
           +  +  L        L      D                S   + +  + +  ++     
Sbjct: 219 VLLVALLIMLTKFPALQSDNHSDA--------KQGSFSASLSRLARIRHWRWAVLAQFCY 270

Query: 369 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 428
           +  Q      ++ YA   +       AA+    ++V            +++      + L
Sbjct: 271 VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--HKVL 328

Query: 429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT 488
               +  +AL L+              V + AL L      I            IF L  
Sbjct: 329 AAYALIAMALCLI-------SAFAGGHVGLIALTLCSAFMSI--------QYPTIFSLGI 373

Query: 489 RGRGISLAVLTNFGS---------NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 537
           +  G      T +GS           IVT     + +  G      L  A+ F  +  
Sbjct: 374 KNLG----QDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	559
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.43
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.38
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.36
2xut_A	524	Proton/peptide symporter family protein; transport	99.31
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.1

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.2e-45  Score=376.43  Aligned_cols=443  Identities=33%  Similarity=0.578  Sum_probs=345.9

Q ss_pred             chhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCC-ccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 008615           94 FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR  172 (559)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr  172 (559)
                      ++.+..+.+.++++++.+++|||.++++.+++.+..+.... +...+.+..+.|++.+++.+|..+|++++|+++||+||
T Consensus         5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR   84 (491)
T 4gc0_A            5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR   84 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44455666677788999999999999998888776431111 00024566788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH------------------hchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhh
Q 008615          173 KRELIIAAVLYALGALTTA------------------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLI  234 (559)
Q Consensus       173 r~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~  234 (559)
                      |++++++.+++.+++++++                  +++|+++++++|+++|+|.|...+....++.|+.|+++|++..
T Consensus        85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            9999999999999999998                  4789999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhcccCCC-------CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHH
Q 008615          235 SLKELFIVLGILLGYFVGSFQINAV-------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ  307 (559)
Q Consensus       235 ~~~~~~~~~G~~~g~~l~~~l~~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~  307 (559)
                      ++.+.+..+|.++++.++..+....       .+||+.+.+..+..++..+..+++||||+|+..|         ++.++
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~---------~~~~~  235 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQEQ  235 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT---------TCHHH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc---------CchhH
Confidence            9999999999999998877654321       2689999999999999888889999999999985         45566


Q ss_pred             HHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHH
Q 008615          308 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL  387 (559)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (559)
                      +++.+++....+..+    .+..+.    ++.....++.......++   .++..+......+.++.+.+.+.+|.+.+.
T Consensus       236 a~~~l~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (491)
T 4gc0_A          236 AEGILRKIMGNTLAT----QAVQEI----KHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVF  304 (491)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhHHHhcCCchhH----HHHHHH----HHHHHhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence            666655544321110    000000    000011111111112222   234555566667777888888999999999


Q ss_pred             HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 008615          388 QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGC  467 (559)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (559)
                      +..+... ..........++..+++.++++++.||+|||+.++.+.....++++.+...... ....+..+...+++..+
T Consensus       305 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~  382 (491)
T 4gc0_A          305 KTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAA  382 (491)
T ss_dssp             HHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred             HhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHH
Confidence            8888776 667777788889999999999999999999999999988888887777654432 23344455555566666


Q ss_pred             hhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH------hcCchhhHHHHHHHHHHHHHHHHhh
Q 008615          468 YQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVRT  541 (559)
Q Consensus       468 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~  541 (559)
                      +..+..++.+.+.+|++|++.|++++|+.++++.+++++++.+.+.+.+      ..+....|++++++++++.++.+++
T Consensus       383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~  462 (491)
T 4gc0_A          383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF  462 (491)
T ss_dssp             HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence            7777788888999999999999999999999999999999988766543      3456678889999999999999999


Q ss_pred             ccCCCCCCHHHHHhhhh
Q 008615          542 VPETKGLSLEEIESKIL  558 (559)
Q Consensus       542 ~~~~~~~~~~~~~~~~~  558 (559)
                      +||||+|++||+|+-+|
T Consensus       463 ~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          463 VPETKGKTLEELEALWE  479 (491)
T ss_dssp             CCCCTTCCHHHHGGGTC
T ss_pred             ecCCCCCCHHHHHHHhC
Confidence            99999999999987654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.5e-39  Score=327.87  Aligned_cols=396  Identities=14%  Similarity=0.075  Sum_probs=297.4

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 008615          101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~  180 (559)
                      ..+...+++.+..+++...+.+.++.+..+       + .+..+.|++.+++.++..++++++|+++||+|||++++++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            344555566677777877888888887776       8 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh----chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008615          181 VLYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI  256 (559)
Q Consensus       181 ~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  256 (559)
                      ++.+++.+++++    +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    9999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCc-chHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Q 008615          257 NAVGG-WRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV  334 (559)
Q Consensus       257 ~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (559)
                      +.. + ||+.|++.++++++..++. +++||+|+....++.++   .+.+.                    ..+.+    
T Consensus       180 ~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------~~~~~----  231 (451)
T 1pw4_A          180 AWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE---YKNDY--------------------PDDYN----  231 (451)
T ss_dssp             HHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---TCCC------------------------------
T ss_pred             HHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh---hcccc--------------------cccch----
Confidence            766 7 9999999998887765544 66888775311100000   00000                    00000    


Q ss_pred             HhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHH
Q 008615          335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMT  413 (559)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  413 (559)
                       .+++.+...++...+++++++.++...+..++..+.    ...+..+.|.++++ .+.+. .+.+.......++.+++.
T Consensus       232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~  305 (451)
T 1pw4_A          232 -EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGT  305 (451)
T ss_dssp             --------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHH
T ss_pred             -hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHH
Confidence             000000011111135667777666555544444333    33567788888887 67766 788999999999999999


Q ss_pred             HHHHHHhhhc--CCcchhhhhHHHHH-HHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchh
Q 008615          414 WIAVAKVDDL--GRRPLLIGGVCGIA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG  490 (559)
Q Consensus       414 ~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  490 (559)
                      ++.+++.||+  ++|+.+..+..+.. ++++++..    .............+..+.......+....+..|.+|++.|+
T Consensus       306 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  381 (451)
T 1pw4_A          306 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG  381 (451)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh
Confidence            9999999999  99988877666555 44443332    11112223333333333333344455567889999999999


Q ss_pred             hHHHHHHHHHHH-HHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhc
Q 008615          491 RGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV  542 (559)
Q Consensus       491 ~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (559)
                      ++.|+.+.+..+ |..++|.+.|.+.+..|+...|++.+++.+++.++.++..
T Consensus       382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999988888887777665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.5e-37  Score=311.81  Aligned_cols=365  Identities=17%  Similarity=0.132  Sum_probs=284.4

Q ss_pred             HHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 008615          105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  184 (559)
                      ++++..+..+++.....+..|.+.++       +|++..+.|++.+++.+++.++.+++|+++||+|||++++++.++.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            33444566777777777888887766       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc-CCCC
Q 008615          185 LGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAVG  260 (559)
Q Consensus       185 i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~  260 (559)
                      ++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. ....
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999   889999999999999999999999999999999999999999999999999999999999999988 5542


Q ss_pred             c------------------------chHHHhhhHHHHHHHHHHhhc--cCCchHHHHHhhccCCCchhhhHHHHHHHHHh
Q 008615          261 G------------------------WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGK  314 (559)
Q Consensus       261 ~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (559)
                      .                        ||+.|++.+++.++..++.++  .||+++.                         
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------------------  237 (438)
T 3o7q_A          183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-------------------------  237 (438)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT-------------------------
T ss_pred             cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc-------------------------
Confidence            3                        999998888777766555443  3444320                         


Q ss_pred             hcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHc-CC
Q 008615          315 LRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-GF  392 (559)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~  392 (559)
                        .++  +                 .++++.+.++++++|+|.++...+..++.....    ..+..+.|.+ +++. +.
T Consensus       238 --~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~  292 (438)
T 3o7q_A          238 --NHS--D-----------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGM  292 (438)
T ss_dssp             --CCC--C-----------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTC
T ss_pred             --ccc--c-----------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCc
Confidence              000  0                 001112234567888887777666555544433    3466788888 7776 66


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccc
Q 008615          393 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISF  472 (559)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (559)
                      +. ..++.......++.+++.++.+++.||++||+.+..+.++.+++++++...     ...+ ......+. +++....
T Consensus       293 ~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~-g~~~~~~  364 (438)
T 3o7q_A          293 TA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHV-GLIALTLC-SAFMSIQ  364 (438)
T ss_dssp             CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----CHHH-HHHHHHHH-HHHHTTH
T ss_pred             ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----CCcH-HHHHHHHH-HHHHHHH
Confidence            66 788999999999999999999999999999999988887777776655431     2222 23333333 3333444


Q ss_pred             ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHH
Q 008615          473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL  536 (559)
Q Consensus       473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~  536 (559)
                      .+....+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..| +...|++.+++.++..+
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            566678878888866 888888877 677999999999999999999 88888876655544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=3.3e-33  Score=284.47  Aligned_cols=399  Identities=13%  Similarity=0.052  Sum_probs=258.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG  216 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~  216 (559)
                      +|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            89999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCccc--chhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc-CCchHHHHHh
Q 008615          217 APLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLLLR  293 (559)
Q Consensus       217 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~  293 (559)
                      ..+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+.. |||+.|++.++..++..++.++. ++.   ...+
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~  204 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKT---LDPH  204 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT---CCSC
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccc---cccc
Confidence            9999999999988  777888899999999999999999988877 99999999887777665554432 111   0000


Q ss_pred             hccCCCchhhhHHHHHHHHHh----------------hcCCCCCCchhhHHHHHHHHHhh--hccccccccccchhhccc
Q 008615          294 AVQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTLVSLK--SSYTDEKSEGSFLEVFQG  355 (559)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  355 (559)
                      +  ++.+.+.+.++.++..+.                ..+..+.++..............  .....+.++....+..+.
T Consensus       205 ~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (491)
T 4aps_A          205 Y--LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV  282 (491)
T ss_dssp             C--SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred             c--cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            0  011111112222221111                11111111110000000000000  000000000000111111


Q ss_pred             CchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhh----
Q 008615          356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI----  430 (559)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~----  430 (559)
                      .......+...+.+...    .....+.+.+.++ .+.+. ...+.......++.+++.++.+++.||++||+...    
T Consensus       283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~  357 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF  357 (491)
T ss_dssp             TTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence            11222222222222222    2344556666665 34432 56777778888888999999999999999987655    


Q ss_pred             -hhHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHH
Q 008615          431 -GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI  506 (559)
Q Consensus       431 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i  506 (559)
                       .+..+.+++++++.......   ............++.+.......+....+..|.+|++.|+++.|+.+....+|..+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i  437 (491)
T 4aps_A          358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL  437 (491)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence             56666666655554432110   11122333333344444444445666789999999999999999999999999999


Q ss_pred             HHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615          507 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL  548 (559)
Q Consensus       507 ~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (559)
                      ++.+.+.+.+ .++...|.+++++++++.++.+++.++.+++
T Consensus       438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887765 4677788888888888777777666665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=3.4e-34  Score=281.12  Aligned_cols=354  Identities=14%  Similarity=0.093  Sum_probs=268.7

Q ss_pred             HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 008615          106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  185 (559)
                      +++..++.+++.....+.++.+.++       +|.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   77 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFML   77 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            3445566677777777888877766       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615          186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM  265 (559)
Q Consensus       186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~  265 (559)
                      +.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.+.. +||+.
T Consensus        78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~  156 (375)
T 2gfp_A           78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRAC  156 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988877 99999


Q ss_pred             HhhhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615          266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK  344 (559)
Q Consensus       266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (559)
                      |++.+++.++..+ ..+++||+++...                                                 ++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~  187 (375)
T 2gfp_A          157 YLFLLVLCAGVTFSMARWMPETRPVDA-------------------------------------------------PRTR  187 (375)
T ss_dssp             HHHHHHHHHHHHCCCCCSSCCCSTTTC-------------------------------------------------CCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCcccCCCCc-------------------------------------------------cccc
Confidence            9999888887766 3456777653100                                                 0011


Q ss_pred             ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615          345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL  423 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  423 (559)
                      .+.++++++|+|.++...+...+.....    ..+..+.|.++++ .+.+. ...+.......++.+++.++.+++.||+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~  262 (375)
T 2gfp_A          188 LLTSYKTLFGNSGFNCYLLMLIGGLAGI----AAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRF  262 (375)
T ss_dssp             TTTCSTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2334667777777666655544443333    2455666666655 56655 6788899999999999999999999998


Q ss_pred             CCcchhhhhHHH-HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 008615          424 GRRPLLIGGVCG-IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG  502 (559)
Q Consensus       424 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  502 (559)
                      ++  ....+..+ ...+...+.... ....+.+......++.. +......+....+..|.+| +.|+++.|+.+....+
T Consensus       263 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~  337 (375)
T 2gfp_A          263 ST--LMWQSVICCLLAGLLMWIPDW-FGVMNVWTLLVPAALFF-FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI  337 (375)
T ss_dssp             HH--HHHHHHHHHHHTSSSSSHHHH-HHHHHHHHHHHHHHHHH-HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHhh-hccccHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH
Confidence            87  22223222 222222111111 00112222223333333 3333345566688899988 8999999999999999


Q ss_pred             HHHHHHHhhHHHHHhcCchhhHHH
Q 008615          503 SNAIVTFAFSPLKELLGAENIFLL  526 (559)
Q Consensus       503 g~~i~~~i~g~l~~~~g~~~~~~~  526 (559)
                      |..++|.+.|.+.+..++...+.+
T Consensus       338 g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          338 GSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHH
Confidence            999999999999887776555554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=1.3e-30  Score=258.89  Aligned_cols=360  Identities=14%  Similarity=0.090  Sum_probs=233.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH---HHHHhchhH-hHHHHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~  213 (559)
                      +|++..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.   +.+.+++.. ..++..+++.|++.+..
T Consensus        38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  117 (417)
T 2cfq_A           38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC  117 (417)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999888776532   222333222 12345566666655555


Q ss_pred             hhhhhhhhhccCCc--ccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHH
Q 008615          214 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL  291 (559)
Q Consensus       214 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~  291 (559)
                      .+.....+.++.++  ++++...+.......+|..++|.+++++.+ . +||+.|++.+++.++..+..++.+|+++.  
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--  193 (417)
T 2cfq_A          118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDAPS--  193 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred             HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence            54444445555443  456777788877889999999999998876 3 89999999887766555555554443210  


Q ss_pred             HhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHH
Q 008615          292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ  371 (559)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (559)
                       +   .+  .+              +..+.                  .+++....+++++++++.++...+........
T Consensus       194 -~---~~--~~--------------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T 2cfq_A          194 -S---AT--VA--------------NAVGA------------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             -S---SC--SS--------------SSSSS------------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -c---cc--cc--------------ccccc------------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence             0   00  00              00000                  00000111244567777666544432222221


Q ss_pred             HhhChhhHHHhHHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHH
Q 008615          372 QITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK  448 (559)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (559)
                      .    ..+..+.|.++.+....   .....+.......++.+++.++.+++.||++||+.+..+..+.+++.+.+..   
T Consensus       236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~---  308 (417)
T 2cfq_A          236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---  308 (417)
T ss_dssp             H----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             H----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence            1    12334456666543211   1134566777777888899999999999999999888777776665444432   


Q ss_pred             hhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHH-HHHHHHHHHHHHHhhHHHHHhcCchhhHHHH
Q 008615          449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENIFLLF  527 (559)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~  527 (559)
                        ..+.+..+...++.... .....+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.
T Consensus       309 --~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~  385 (417)
T 2cfq_A          309 --ATSALEVVILKTLHMFE-VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL  385 (417)
T ss_dssp             --CCSHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred             --hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence              12222222222222222 2222233457889999999999999995 7788899999999999999988888888888


Q ss_pred             HHHHHHHHHHHHhhccCCCCCC
Q 008615          528 AAIAFLAVLFIVRTVPETKGLS  549 (559)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~  549 (559)
                      +++.+++.++.+...+|+++.+
T Consensus       386 ~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          386 GLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHHHHHHHHhhhcCCCchH
Confidence            8888888777666666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=5.2e-28  Score=248.19  Aligned_cols=401  Identities=11%  Similarity=0.044  Sum_probs=225.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhch-hHhHHHHHHHHHHhhhhhhhhhh
Q 008615          140 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       140 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            9999999999999999999999999999999 999999999999999999999999 99999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhH---HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC-chHHHHHh
Q 008615          218 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP-SPRWLLLR  293 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~  293 (559)
                      .+++.|++|+++|+++.+.   ...+.++|.+++|.+++.+.+.. +||+.|++.+++.++..+..++..+ .++     
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----  204 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWLGRKRYIH-----  204 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHSSSSSCCC-----
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence            9999999999999876666   99999999999999999988777 9999999988887776655543321 110     


Q ss_pred             hccCCCchhhhHHHHHHHH-HhhcCCCCCCchhhHHHH------------------------------HHHHHhhhcc--
Q 008615          294 AVQGKGSLQEYKEQAISAL-GKLRRRPPGDKLSERQIE------------------------------DTLVSLKSSY--  340 (559)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~--  340 (559)
                         .+.+ +.+..+..+.. ...+..... ........                              ......+...  
T Consensus       205 ---~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (524)
T 2xut_A          205 ---MPPE-PKDPHGFLPVIRSALLTKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQ  279 (524)
T ss_dssp             ---CC---------------------CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTH
T ss_pred             ---cCCC-CccchhHHHHHHHHHhhhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhH
Confidence               0000 00000000000 000000000 00000000                              0000000000  


Q ss_pred             -ccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008615          341 -TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK  419 (559)
Q Consensus       341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  419 (559)
                       +..+...+..+..+.+......... .........+.....+.+.+..+.+.+.-...+.+.....++.+++..+.+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (524)
T 2xut_A          280 LERARKSHPDAAVDGVRSVLRILVLF-ALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFV  358 (524)
T ss_dssp             HHHSCCSCCSSSSTTTTTHHHHHHHH-TTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred             HhhhhccccHhHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhh
Confidence             0000000000011111111111111 11111111111112222333333322100134455555445555666666555


Q ss_pred             h----hhcCCc----chhhhhHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHHHhhcccccccceeecccCCccc
Q 008615          420 V----DDLGRR----PLLIGGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT  488 (559)
Q Consensus       420 ~----d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  488 (559)
                      .    +|.++|    +.+..+.++.+++++++.......   .......+....++.+.+.....+....+..|.+|++.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  438 (524)
T 2xut_A          359 LYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM  438 (524)
T ss_dssp             ------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred             hHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            3    444332    344455555555554443210000   01122223333333344444445666688899999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhHHHHHhc----------Cc-hhhHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 008615          489 RGRGISLAVLTNFGSNAIVTFAFSPLKELL----------GA-ENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE  552 (559)
Q Consensus       489 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (559)
                      |++++|+.++...+|+.++|.+.|.+.+..          +. ...|++.+++.+++.++.+++.++.++++.++
T Consensus       439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (524)
T 2xut_A          439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR  513 (524)
T ss_dssp             CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence            999999999999999999999999887632          21 22366677777777766666666655544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=4.9e-13  Score=133.88  Aligned_cols=145  Identities=14%  Similarity=0.131  Sum_probs=129.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHHHHHHHHHHH-HHHHHHHhc--hhHhHHHHHHHHHHhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYA-LGALTTAYA--PGLGVLLVGRLLYGLGIGL  212 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~  212 (559)
                      +|.+..+.+++.+.+.++..++.++.|++.||+  |||+.+..+.++.. ++.++..+.  .+.+.+++..++.|++.+.
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  362 (451)
T 1pw4_A          283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  362 (451)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999999999  99999988877776 666666666  3677888888999999998


Q ss_pred             hhhhhhhhhhccCCcccchhhhhHHHHHHHH-HHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc
Q 008615          213 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL  283 (559)
Q Consensus       213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  283 (559)
                      ..+....++.|.+|+++|++++++......+ |..++|.+.+.+.+.. ||+..|++.+++.++..++.+++
T Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            8898899999999999999999999999999 9999999999998887 89999999988888776666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.43  E-value=1.3e-12  Score=130.30  Aligned_cols=168  Identities=14%  Similarity=0.035  Sum_probs=126.9

Q ss_pred             HHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHH
Q 008615          369 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK  448 (559)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (559)
                      ++.............|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.++......
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~  113 (438)
T 3o7q_A           35 FFLWAVANNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE  113 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc
Confidence            33333333456667888888999888 88999999999999999999999999999999999999998888877733211


Q ss_pred             hhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH-HhcC--------
Q 008615          449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG--------  519 (559)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~-~~~g--------  519 (559)
                         ..+...+....++.+.......+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..+        
T Consensus       114 ---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  190 (438)
T 3o7q_A          114 ---IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD  190 (438)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred             ---cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence               2233333344444444444555566689999999999999999999999999999999999998 5444        


Q ss_pred             -----------------chhhHHHHHHHHHHHHHHHHh
Q 008615          520 -----------------AENIFLLFAAIAFLAVLFIVR  540 (559)
Q Consensus       520 -----------------~~~~~~~~~~~~~~~~~~~~~  540 (559)
                                       |++.|++.+++.++..++.++
T Consensus       191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                             677777776666555554433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.38  E-value=7.3e-13  Score=129.15  Aligned_cols=164  Identities=14%  Similarity=0.098  Sum_probs=130.4

Q ss_pred             hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615          377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV  456 (559)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (559)
                      .......|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+++...      .+..
T Consensus        17 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~   89 (375)
T 2gfp_A           17 TIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------SSLT   89 (375)
T ss_dssp             HHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------HHHH
T ss_pred             HHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccHH
Confidence            345566777788888887 789999999999999999999999999999999999998888887777653      1233


Q ss_pred             HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615          457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL  536 (559)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  536 (559)
                      .+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.+++.++..+
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33334444444444455666688899999999999999999999999999999999999888999999888877777666


Q ss_pred             HHHhhccCCCC
Q 008615          537 FIVRTVPETKG  547 (559)
Q Consensus       537 ~~~~~~~~~~~  547 (559)
                      +.++..||+++
T Consensus       170 ~~~~~~~~~~~  180 (375)
T 2gfp_A          170 SMARWMPETRP  180 (375)
T ss_dssp             CCCCSSCCCST
T ss_pred             HHHHHCcccCC
Confidence            55556666543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.38  E-value=1.9e-12  Score=127.94  Aligned_cols=146  Identities=14%  Similarity=0.156  Sum_probs=125.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhh
Q 008615          140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL  219 (559)
Q Consensus       140 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  219 (559)
                      .+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus       256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888999999999999999999999999999988888888888888888888888888888777777888


Q ss_pred             hhhccCCcccchhhhhH-HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhh-ccCCc
Q 008615          220 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPS  286 (559)
Q Consensus       220 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~  286 (559)
                      ++.|.+|++.|+.+.++ ++....+|.+++|.+++++.+.. |++..|++.+++.++..++.+ +.+|.
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999998 48888899999999999988766 899999998888887766554 45553

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.36  E-value=1.3e-11  Score=124.91  Aligned_cols=157  Identities=16%  Similarity=0.084  Sum_probs=121.7

Q ss_pred             hHHHhHHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 008615          378 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL  450 (559)
Q Consensus       378 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (559)
                      .+..+.+.++.+      .+.+. .+.+++.....++..++.++.|+++|| +|||+.+..+.++.+++.+++..     
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----  104 (491)
T 4aps_A           31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----  104 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence            454556666655      67776 889999999999999999999999999 89999999999888888777653     


Q ss_pred             cCchhHHHHHHHHHHHHhhcccccccceeecccCCccc--hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHH
Q 008615          451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA  528 (559)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~  528 (559)
                      ..+.+. +....++.+.......+...+++.|.+|++.  |+.+.++.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus       105 ~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~  183 (491)
T 4aps_A          105 PFGASA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA  183 (491)
T ss_dssp             CCSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhhHHH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            123333 3333334444444455666788999999988  7778888899999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHhh
Q 008615          529 AIAFLAVLFIVRT  541 (559)
Q Consensus       529 ~~~~~~~~~~~~~  541 (559)
                      ++.+++.++.++.
T Consensus       184 ~~~~~~~~~~~~~  196 (491)
T 4aps_A          184 IGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            7777666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.31  E-value=5.7e-11  Score=121.30  Aligned_cols=157  Identities=12%  Similarity=0.052  Sum_probs=119.6

Q ss_pred             hHHHhHHHHHH-HcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhhhhHHHHHHHHHHHHHHHHh
Q 008615          378 SVLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKI  449 (559)
Q Consensus       378 ~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (559)
                      .+..+.+.++. +.+      .+. .+.+++.....++..++.++.|+++||+ |||+.+..+.++.+++.+++...   
T Consensus        30 ~~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---  105 (524)
T 2xut_A           30 GMRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---  105 (524)
T ss_dssp             HHHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---
Confidence            35556666654 466      666 7899999999999999999999999999 99999999888888877766541   


Q ss_pred             hcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH---HHHHHHHHHHHHHHhhHHHHHhcCchhhHHH
Q 008615          450 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLL  526 (559)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  526 (559)
                       ..+.+. +....+..+.......+...+++.|.+|++.|+++.++   .+....+|..++|.+.+.+.+..||+..|++
T Consensus       106 -~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~  183 (524)
T 2xut_A          106 -EHSVQG-FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI  183 (524)
T ss_dssp             -SSCHHH-HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred             -cccHHH-HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence             113333 33333444444445556667899999999999876666   8888999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHh
Q 008615          527 FAAIAFLAVLFIVR  540 (559)
Q Consensus       527 ~~~~~~~~~~~~~~  540 (559)
                      .+++.+++.++.++
T Consensus       184 ~~~~~~~~~~~~~~  197 (524)
T 2xut_A          184 PGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777666655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.10  E-value=3.2e-10  Score=114.74  Aligned_cols=150  Identities=18%  Similarity=0.053  Sum_probs=109.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch-----hHhHHHHHHHHHHhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-----GLGVLLVGRLLYGLGIGL  212 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~~~l~~~r~l~G~~~g~  212 (559)
                      .+.+............+...++.++.+++.||+|||+.++.+..+.+++.+..+...     +...++..-+..+.....
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (491)
T 4gc0_A          307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  386 (491)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence            456666777777788888999999999999999999999999888887776665431     222222222222222223


Q ss_pred             hhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC-----CcchHHHhhhHHHHHHHHHHh-hccCCc
Q 008615          213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIGM-WSLPPS  286 (559)
Q Consensus       213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~~~~~~-~~~~e~  286 (559)
                      ..+....+.+|.+|.+.|++++++......+|.++++.+.+.+.+..     .++.+.|++.++++++..+.. +++||+
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            45677789999999999999999999999999999887766554321     145667888888887766654 678998


Q ss_pred             h
Q 008615          287 P  287 (559)
Q Consensus       287 p  287 (559)
                      .
T Consensus       467 k  467 (491)
T 4gc0_A          467 K  467 (491)
T ss_dssp             T
T ss_pred             C
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	559
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-22
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-10

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 96.7 bits (239), Expect = 5e-22
 Identities = 62/454 (13%), Positives = 129/454 (28%), Gaps = 40/454 (8%)

Query: 107 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSI 166
              G+ FGY          +L  P L        S   LG  +SG          ++ S+
Sbjct: 26  IFLGIFFGYAAYYLVRKNFALAMPYLVE---QGFSRGDLGFALSGISIAYGFSKFIMGSV 82

Query: 167 ADFLGRKRELIIAAVLYALGALT----TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
           +D    +  L    +L A   L           + V+ V   L G   G+        + 
Sbjct: 83  SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142

Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
                + RG ++S+      +G  +   +    +     W     + A  A+L+ +  ++
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202

Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
           +              +       +    A  +L  +                        
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI---------------------- 240

Query: 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 402
                    V     L    I            +  +L ++   L+     A   ++   
Sbjct: 241 -----FMQYVLPNKLLWYIAIAN----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291

Query: 403 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL 462
            +     +  T +     D + R      GV  + L  +    Y+    G P V +   +
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM-ICM 350

Query: 463 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAE 521
           + +G        +  L   E+ P +  G       L    G +   +       +  G +
Sbjct: 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 410

Query: 522 NIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 555
             F++    + LAV+ ++  +   K    + ++ 
Sbjct: 411 GGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 49/422 (11%), Positives = 115/422 (27%), Gaps = 52/422 (12%)

Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA----AVLYALGALTTAYA 193
            ++S    G++ +     +LL   L   ++D LG ++ L+       V++A   +     
Sbjct: 38  NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97

Query: 194 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 253
                +LVG ++ G+ +G   +     +        R +        +   +        
Sbjct: 98  LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 254 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 313
             I      ++++ L +  AL++ + ++            A     +             
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA---------- 207

Query: 314 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 373
                                          S    LE+F+ P L    +    V     
Sbjct: 208 ------------------------------FSLKLALELFRQPKLWFLSLYVIGVSCTYD 237

Query: 374 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 433
                   +      +            ++   +   +M +  +      G+  LL+ G 
Sbjct: 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297

Query: 434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493
                 +    A          + V  L               +  ++  F +R      
Sbjct: 298 IMSVRIIGSSFATS-------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350

Query: 494 SLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 552
            +        +   ++     + E +G +  +L+   +A    L  V T+     LSL  
Sbjct: 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410

Query: 553 IE 554
            +
Sbjct: 411 RQ 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	559
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.33

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-39  Score=319.50  Aligned_cols=403  Identities=15%  Similarity=0.083  Sum_probs=284.0

Q ss_pred             HHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 008615          101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~  180 (559)
                      .++..+.++.+...++...++...|.+. +       +|+|.+|+|++.+++.++++++++++|+++||+|||+++.++.
T Consensus        25 ~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   96 (447)
T d1pw4a_          25 QIFLGIFFGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   96 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            3344455566666666666666666553 3       7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhch----hHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008615          181 VLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI  256 (559)
Q Consensus       181 ~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  256 (559)
                      ++.+++.++++++.    +++.++++|++.|++.|...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_          97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            99999999998864    78899999999999999999999999999999999999999999999999999999988876


Q ss_pred             CCCCcchHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Q 008615          257 NAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS  335 (559)
Q Consensus       257 ~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (559)
                      ....+||+.|++.+++.++..++. ++++++|+......                       .++.+....++..     
T Consensus       177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~-----  228 (447)
T d1pw4a_         177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-----------------------IEEYKNDYPDDYN-----  228 (447)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-----------------------CTTTCCC-----------
T ss_pred             hhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccch-----------------------hhhhhhhcccchh-----
Confidence            655589999999988888766655 44566554111000                       0000000000000     


Q ss_pred             hhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHH
Q 008615          336 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI  415 (559)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (559)
                      .+.+.+...++...+..++++.++.......+....    ......+.+.++.+....+....+.......++.+++.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (447)
T d1pw4a_         229 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL  304 (447)
T ss_dssp             -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhh----hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhh
Confidence            000001111222344556665555444433333332    2346677788777654444478889999999999999999


Q ss_pred             HHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH
Q 008615          416 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL  495 (559)
Q Consensus       416 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  495 (559)
                      .|++.||++|++..........+..............+.+ ......+..++......+....+..|.+|++.|+++.|+
T Consensus       305 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  383 (447)
T d1pw4a_         305 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT-VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF  383 (447)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred             hhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            9999999998876555444443333333222111122233 333333333444444455666788999999999999999


Q ss_pred             HHHHHHHH-HHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccC
Q 008615          496 AVLTNFGS-NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE  544 (559)
Q Consensus       496 ~~~~~~~g-~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (559)
                      .+.+.+++ ..++|.+.|.+.|..|+...+++.+++.+++.++.+++.++
T Consensus       384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99888774 56688999999999999999988888877777766655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.8e-30  Score=253.02  Aligned_cols=363  Identities=14%  Similarity=0.061  Sum_probs=241.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHH----HHHHHHHHhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL----LVGRLLYGLGIGLA  213 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l----~~~r~l~G~~~g~~  213 (559)
                      +|+|..++|++.+++.+++.++++++|+++||+|||++++++..+..++.++..+..+....    ++.+++.+.+.+..
T Consensus        38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (417)
T d1pv7a_          38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC  117 (417)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccccc
Confidence            89999999999999999999999999999999999999999999999999888887665544    44455555555544


Q ss_pred             hhhhhhhhhccCCc--ccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHH-HHHHhhccCCchHHH
Q 008615          214 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL-MGIGMWSLPPSPRWL  290 (559)
Q Consensus       214 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~  290 (559)
                      .........+..++  +++.+..+........+..+++.+++.+.+.  +|++.++.......+ ..+..+..+|+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T d1pv7a_         118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKTDAPSSA  195 (417)
T ss_dssp             GTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred             ccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cccccccchhhHHHHHHHHHHHHhcccccch
Confidence            44444444433332  3455677788888899999999999987765  566666555555544 444456666655311


Q ss_pred             HHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHH
Q 008615          291 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF  370 (559)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (559)
                      ..+          +.+                               +..+++.......+.++.+..+...........
T Consensus       196 ~~~----------~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (417)
T d1pv7a_         196 TVA----------NAV-------------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC  234 (417)
T ss_dssp             CSS----------HHH-------------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred             hhh----------hhh-------------------------------hhhcccccccccccccccccccchhhhhHHHHH
Confidence            000          000                               000011111112233333433333333323222


Q ss_pred             HHhhChhhHHHhHHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHH
Q 008615          371 QQITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY  447 (559)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (559)
                      ....    .......+.......   .....+.......++..++..+.+++.||.++++.+..+.++.+++.+.+..  
T Consensus       235 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--  308 (417)
T d1pv7a_         235 TYDV----FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--  308 (417)
T ss_dssp             HHHH----HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHh----hhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc--
Confidence            2211    222222222221111   1135566677778888999999999999999999999888888777766653  


Q ss_pred             HhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHH-HHHHHHHHHHHHhhHHHHHhcCchhhHHH
Q 008615          448 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELLGAENIFLL  526 (559)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~i~g~l~~~~g~~~~~~~  526 (559)
                         ..+.+..+...++. +.......+...++..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|+...|++
T Consensus       309 ---~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         309 ---ATSALEVVILKTLH-MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             ---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ---ccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence               23334333333333 33333344566688999999999999999864 55778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCHHHH
Q 008615          527 FAAIAFLAVLFIVRTVPETKGLSLEEI  553 (559)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (559)
                      .+++.++..++.++..++++..+.++.
T Consensus       385 ~~~~~~~~~~~~~~~l~~~~~~~~~r~  411 (417)
T d1pv7a_         385 LGLVALGFTLISVFTLSGPGPLSLLRR  411 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCccchhHh
Confidence            999988888888888877776665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=4.3e-14  Score=137.06  Aligned_cols=144  Identities=13%  Similarity=0.133  Sum_probs=132.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA  217 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  217 (559)
                      .+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            56678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCcccchhhhhHH-HHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          218 PLYIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       218 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      .+++.|.+|+++|+++.++. +....+|..++|.++|++.+.. ||++.|++.+++.++..++.++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999975 5667899999999999999888 9999999998888876665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.6e-11  Score=120.14  Aligned_cols=144  Identities=15%  Similarity=0.121  Sum_probs=115.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH---HHHHHHHh--chhHhHHHHHHHHHHhhhhh
Q 008615          138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA---LGALTTAY--APGLGVLLVGRLLYGLGIGL  212 (559)
Q Consensus       138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~--~~~~~~l~~~r~l~G~~~g~  212 (559)
                      ++.+..+.++..+.+.++..++.++.|++.||++||+......+...   ++.++...  ..+.+..+++-++.|++.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  359 (447)
T d1pw4a_         280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  359 (447)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999998754433333222   22222222  35677788888899999988


Q ss_pred             hhhhhhhhhhccCCcccchhhhhHHHHHHHH-HHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhc
Q 008615          213 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS  282 (559)
Q Consensus       213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  282 (559)
                      ..+....++.|.+|++.|++++|+.+....+ |.+++|.+.+++.+.. ||+..|++.++..++..++..+
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999887776 5677899999988888 9999999888777776655543