Citrus Sinensis ID: 008623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKRPVGSLR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEcccccHHcHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHcccccccccccccEEHccEEEEEccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgeeediytkdgtldykgnpadktktgtwkacpfilgneCCERLAYYGMSTNLVRYFKHqldqssstasknvldwsgtcyitpLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTAsvsglkpvchgprgeetcqvtDAQSATFFVALYLIALgtggikpcvssygadqfddadeaEKKHKSSFFNWFYFSINIGALIASSVLVWIqdnegwgwgfgIPAVAMAIAVVSFFSgtrlfrnqkpggspltRICQVVAASIRKHkvelpadksllyetadaesnitgsrkldhtkdfsffDKAAVEIQSdnikesvnpwrlcTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQgermdthvgnssfkippaslsifdtlsvifwvpiydrfivpvtrkftghkngltQLQRMGIGLFISILSMIAAAVLELIRLRMVrehnyydlpempmsimwqvpqYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIstkngnlgwipdnlnrghlHYFFWLLTWYtykrpvgslr
Flexible Loop (DISEMBL)
mgeeediytkdgtldykgnpadktktgtwkacPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFrnqkpggsplTRICQVVAASIRKHkvelpadksllyetadaesnitgsrkldhtkdFSFFDKAAVEIQsdnikesvnpwRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYkrpvgslr
Low Complexity Region (SEG)
MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKRPVGSLR
Disordered region (IsUnstruct)
************************KTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD*****ASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPV****************SATFFVALYLIALGTGGIKPCVSSYGADQF***********SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYET************LDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKR******
Disordered Region (DISOPRED)
******I****GTLDY**********GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCH**********TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDAD*A*KKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSL***********************SFFDK*******************CTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKRPV****
Disordered Region (DISEMBL)
MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ*********KNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKRPVGSLR
Disordered Region (DISPRO)
********T*DGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKRPVGSLR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLTWYTYKRPVGSLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	559	2.2.26 [Sep-21-2011]
Q9M390	570	Peptide transporter PTR1	yes	no	0.983	0.964	0.684	0.0
Q9LFB8	570	Peptide transporter PTR5	no	no	0.985	0.966	0.666	0.0
P46032	585	Peptide transporter PTR2	no	no	0.962	0.919	0.631	0.0
Q93Z20	590	Probable peptide/nitrate	no	no	0.942	0.893	0.585	0.0
Q84WG0	545	Probable peptide/nitrate	no	no	0.894	0.917	0.542	1e-171
Q9SX20	596	Probable nitrite transpor	no	no	0.914	0.857	0.467	1e-130
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.953	0.915	0.430	1e-128
Q9LQL2	614	Nitrate transporter 1.5 O	no	no	0.973	0.885	0.431	1e-128
Q8GXN2	589	Nitrate transporter 1.8 O	no	no	0.964	0.915	0.431	1e-127
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.955	0.911	0.425	1e-126

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/570 (68%), Positives = 461/570 (80%), Gaps = 20/570 (3%)

Query: 3   EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
           EE+D+YT+DGT+D   NPA+K KTG WKAC FILGNECCERLAYYGM TNLV Y + +L+
Sbjct: 2   EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61

Query: 63  QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
           Q ++TA+ NV +WSGTCYITPLIGAF+ADAYLGRYWTIA F  IYV GMT LT++ASV G
Sbjct: 62  QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121

Query: 123 LKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH 182
           LKP   G    +TC    +Q+A FFVALY+IALGTGGIKPCVSS+GADQFD+ DE EK  
Sbjct: 122 LKP---GNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178

Query: 183 KSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ 242
           KSSFFNWFYFSIN+GALIA++VLVWIQ N GWGWGFG+P VAM IAV  FF G+R +R Q
Sbjct: 179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238

Query: 243 KPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKA 302
           +PGGSPLTRI QV+ A+ RK  V++P DKSLL+ETAD ESNI GSRKL HT +  FFDKA
Sbjct: 239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA 298

Query: 303 AVEIQSDNIKE-SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
           AVE QSD+IK+  VNPWRLC+VTQVEELK+I+ LLP+WATGI+F+ VYSQMS++FVLQG 
Sbjct: 299 AVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGN 358

Query: 362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
            MD H+G  +F+IP ASLS+FDT+SV+FW P+YD+FI+P+ RKFT ++ G TQLQRMGIG
Sbjct: 359 TMDQHMG-KNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIG 417

Query: 422 LFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 481
           L +SI +MI A VLE++RL  V+ HN YD  ++ MSI WQ+PQY LIGCAEVFTFIGQLE
Sbjct: 418 LVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLE 477

Query: 482 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHY 541
           FFY+QAPDAMRSLCSALSLTTVALGNYLS++LVT+V  I+ KNG  GWIPDNLNRGHL Y
Sbjct: 478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDY 537

Query: 542 FFWLLT-----------W----YTYKRPVG 556
           FF+LL            W    Y YK+ VG
Sbjct: 538 FFYLLATLSFLNFLVYLWISKRYKYKKAVG 567

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/572 (66%), Positives = 453/572 (79%), Gaps = 21/572 (3%)

Query: 1   MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ 60
           M +++DIYTKDGTLD    PA+K KTGTWKAC FILG ECCERLAYYGMSTNL+ Y + Q
Sbjct: 1   MEDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQ 60

Query: 61  LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV 120
           ++  + +ASK+V +WSGTCY TPLIGAF+ADAYLGRYWTIA F +IY+ GMT LT++ASV
Sbjct: 61  MNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASV 120

Query: 121 SGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
            GL P C G    ETC  T  Q+A  F+ALYLIALGTGGIKPCVSS+GADQFDD DE EK
Sbjct: 121 PGLTPTCSG----ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query: 181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
           + KSSFFNWFYF IN+GA+IASSVLVWIQ N GWGWG G+P VAMAIAVV FF+G+  +R
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query: 241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 300
            QKPGGSPLTR+ QV+ AS RK KV++P D+SLLYE  DAES+I GSRKL+HTK  +FFD
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFD 296

Query: 301 KAAVEIQSDNIKES-VNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
           KAAVE +SDN   +  + W+LCTVTQVEELKA++RLLPIWATGI+F++VYSQM ++FVLQ
Sbjct: 297 KAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQ 356

Query: 360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG 419
           G  +D H+G  +FKIP ASLS+FDTLSV+FW P+YD+ IVP  RK+TGH+ G TQLQR+G
Sbjct: 357 GNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIG 415

Query: 420 IGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
           IGL ISI SM++A +LE+ RL  V+ HN Y+   +PM+I WQVPQYFL+GCAEVFTFIGQ
Sbjct: 416 IGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQ 475

Query: 480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
           LEFFY+QAPDAMRSLCSALSLT +A GNYLS+ LVT+VT ++   G  GWI  NLN GHL
Sbjct: 476 LEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHL 535

Query: 540 HYFFWLLT---------------WYTYKRPVG 556
            YFFWLL                WYTYK+  G
Sbjct: 536 DYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTG 567

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/548 (63%), Positives = 423/548 (77%), Gaps = 10/548 (1%)

Query: 3   EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
           +E  +Y +DG++D+ GNP  K KTG WKACPFILGNECCERLAYYG++ NL+ Y   +L 
Sbjct: 19  QEVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLH 78

Query: 63  QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
           Q + +A+ NV  W GTCY+TPLIGA LADAY GRYWTIA FS IY IGM+ LT++ASV  
Sbjct: 79  QGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPA 138

Query: 123 LKPV-CHGPRGEETC-QVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
           LKP  C G    + C   T AQ A FF  LYLIALGTGGIKPCVSS+GADQFDD D  E+
Sbjct: 139 LKPAECIG----DFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRER 194

Query: 181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
             K+SFFNWFYFSINIGAL++SS+LVWIQ+N GWG GFGIP V M +A+ SFF GT L+R
Sbjct: 195 VRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYR 254

Query: 241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 300
            QKPGGSP+TRI QVV AS RK  V++P D +LLYET D  S I GSRK++HT D  + D
Sbjct: 255 FQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLD 314

Query: 301 KAAVEIQSDNIK-ESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
           KAAV  + ++   +  N WRLCTVTQVEELK ++R+ PIWA+GIIFSAVY+QMS++FV Q
Sbjct: 315 KAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQ 374

Query: 360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG 419
           G  M+  +G  SF++PPA+L  FDT SVI WVP+YDRFIVP+ RKFTG   G T++QRMG
Sbjct: 375 GRAMNCKIG--SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMG 432

Query: 420 IGLFISILSMIAAAVLELIRLRMVREHNYYDL-PEMPMSIMWQVPQYFLIGCAEVFTFIG 478
           IGLF+S+L M AAA++E+IRL M  +    +    +P+S++WQ+PQYF++G AEVF FIG
Sbjct: 433 IGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIG 492

Query: 479 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGH 538
           QLEFFY+Q+PDAMRSLCSAL+L T ALGNYLSSL++T+VT  +T+NG  GWI DNLN GH
Sbjct: 493 QLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGH 552

Query: 539 LHYFFWLL 546
           L YFFWLL
Sbjct: 553 LDYFFWLL 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/540 (58%), Positives = 406/540 (75%), Gaps = 13/540 (2%)

Query: 10  KDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTAS 69
           +DG++D  GNP  K KTG WKACPFILGNECCERLAYYG++ NL+ Y+  +L +S+ +A+
Sbjct: 37  EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query: 70  KNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHG 129
            +V+ W GTCYITPLIGA +AD+Y GRYWTIA FS IY IGM  LT++AS+  LKP    
Sbjct: 97  SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query: 130 PRGEETCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN 188
                 C   T  Q A FF  LYLIALGTGGIKPCVSS+GADQFDD D  E+  K+SFFN
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query: 189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSP 248
           WFYFSINIG+ I+S++LVW+Q+N GWG GF IP V M +++ SFF GT L+R QKPGGSP
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276

Query: 249 LTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAV--EI 306
           +TR+CQV+ A+ RK K+ LP D S LYET +  S I GSRK+ HT  + F DKAAV  E 
Sbjct: 277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336

Query: 307 QSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTH 366
           +S +   S NPW+LCTVTQVEE+K ++R+ PIWA+GI++S +YSQ+S+LFV QG  M+  
Sbjct: 337 ESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRI 395

Query: 367 VGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI 426
           +   SF+IPPAS  +FDTL V+  +PIYDRF+VP  R+FTG   GLT LQRMGIGLF+S+
Sbjct: 396 I--RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSV 453

Query: 427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQ 486
           LS+ AAA++E +RL++ ++        + MSI WQ+PQY L+G AEVF FIG++EFFY++
Sbjct: 454 LSIAAAAIVETVRLQLAQDF-------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDE 506

Query: 487 APDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLL 546
           +PDAMRS+CSAL+L   A+G+YLSSL++T+V   +   G  GW+PD+LN+GHL YFFWLL
Sbjct: 507 SPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLL 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  600 bits (1547), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/547 (54%), Positives = 386/547 (70%), Gaps = 47/547 (8%)

Query: 3   EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
           EE  +Y +DG++D  GNP  K  TG WKACPFI  NECCERLAYYG++ NL+ YF ++L 
Sbjct: 20  EEVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELH 79

Query: 63  QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
           +++ +A+++V+ W GTCYITPLIGA +ADAY GRYWTIA FS IY  GM  LT++ASV G
Sbjct: 80  ETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPG 139

Query: 123 LKPV-CHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK 181
           LKP  C G        V   QS   F  LYLIALGTGGIKPCVSS+GADQFD  D +E+ 
Sbjct: 140 LKPAECIGSLCPPATMV---QSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERV 196

Query: 182 HKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN 241
            K+SFFNWFYF+INIGA ++S+VLVWIQ+N GW  GF IP V M +A +SFF GT L+R 
Sbjct: 197 RKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRF 256

Query: 242 QKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 301
           QKP GSP+T +CQV+ A+ RK  +++P D +   +  DA +                   
Sbjct: 257 QKPRGSPITSVCQVLVAAYRKSNLKVPEDST---DEGDANT------------------- 294

Query: 302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
                         NPW+LCTVTQVEE+K ++RL+PIWA+GIIFS ++SQ+ +LFV QG 
Sbjct: 295 --------------NPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGR 340

Query: 362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
            M   +G   F+IPPA+L +FDT SV+  VPIYDR IVP+ R+FTG   G T+LQRMGIG
Sbjct: 341 CMKRTIG--LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIG 398

Query: 422 LFISILSMIAAAVLELIRLRMVREHNYYDLPEM-PMSIMWQVPQYFLIGCAEVFTFIGQL 480
           LF+S+LS+  AA++E +RL++ R+ +  +  ++ P++I WQ+PQYFL+G A VF F+G++
Sbjct: 399 LFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRI 458

Query: 481 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIP-DNLNRGHL 539
           EFFYEQ+PD+MRSLCSA +L T  LGNYLSSL++T+V  +S K+    WIP DN+N GHL
Sbjct: 459 EFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKD---CWIPSDNINNGHL 515

Query: 540 HYFFWLL 546
            YFFWLL
Sbjct: 516 DYFFWLL 522

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  467 bits (1202), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/522 (46%), Positives = 345/522 (66%), Gaps = 11/522 (2%)

Query: 33  PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADA 92
           PFI  NE CE+LA  G   N++ Y   QL    + A+  + +++GT  +TPL+GAF+AD+
Sbjct: 31  PFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADS 90

Query: 93  YLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPV-CHGPRGEETCQVTD-AQSATFFVAL 150
           + GR+WTI   SIIY IGMT LT++A +  L+P  C   +GEE C V D AQ +  +VAL
Sbjct: 91  FAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPC---KGEEVCVVADTAQLSILYVAL 147

Query: 151 YLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD 210
            L ALG+GGI+PCV ++GADQFD++D  +     ++FNW+YF +    L+A +VLVWIQD
Sbjct: 148 LLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQD 207

Query: 211 NEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPAD 270
           N GWG G GIP VAM ++V++F  G +L+R+  P GSP TR+ QV  A+ RK K+ + +D
Sbjct: 208 NVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSD 267

Query: 271 KSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIK--ESVNPWRLCTVTQVEE 328
            SLLY   + ++ I+   KL HTK  SF DKAA+  + DN+K  +  N WRL TV +VEE
Sbjct: 268 PSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEE 327

Query: 329 LKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVI 388
           LK+++R+ PI A+GI+    Y+Q  +  + Q + M+ H+ N SF+IP  S+S+F T++++
Sbjct: 328 LKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTN-SFQIPAGSMSVFTTVAML 386

Query: 389 FWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNY 448
             +  YDR  V V RKFTG + G+T L RMGIG  ISI++ + A  +E+ R  +  EH  
Sbjct: 387 TTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGL 446

Query: 449 YDLPE--MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG 506
            D P   +P+S +W +PQY L G AE F  IG LEFFY+QAP++MRS  +AL    +++G
Sbjct: 447 LDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIG 506

Query: 507 NYLSSLLVTIVTSISTKNGNLGWIPD-NLNRGHLHYFFWLLT 547
           NY+S+LLVT+V   S K     W+PD NLNRG L YF+WL+T
Sbjct: 507 NYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLIT 548

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  460 bits (1183), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/544 (43%), Positives = 344/544 (63%), Gaps = 11/544 (2%)

Query: 3   EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
           E  D YTKDGT+D +GNP  ++  G WKAC F++  E  ER+AYYG+S+NL  Y   +L 
Sbjct: 5   EVGDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLH 64

Query: 63  QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
           Q +  +S NV +W GT ++TP++GA++ DA LGRY T  I   IY  GM  LT++ ++ G
Sbjct: 65  QGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPG 124

Query: 123 LKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK 181
           +KP        E C+     Q A FF ALY +A+GTGG KP +S+ GADQFD  D  EK 
Sbjct: 125 IKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKT 184

Query: 182 HKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN 241
            K SFFNW+ FSI  G L A++VLV++QDN GW  G+G+P + +AI++  F  GT  +R+
Sbjct: 185 QKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRH 244

Query: 242 QKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 301
           + P GSP T++ +V+ AS RK    +  D +  +E    E    G+  +  T    F D+
Sbjct: 245 KLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDR 304

Query: 302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
           A+++  ++      + W LCT T+VEE K ++R+LP+     + S + +Q+++LFV QG 
Sbjct: 305 ASLKTGTN------HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGT 358

Query: 362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
            +D  V   SF IPPASLS F TLS++  + +YDR  V +TRKFTG+  G+T LQRMGIG
Sbjct: 359 TLDRKV-TGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIG 417

Query: 422 LFISILSMIAAAVLELIRLRMVREHNYYDLP--EMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
           L   IL MI A+V E  RL++  +H        ++P++I   +PQ+ L+G A+ F  + +
Sbjct: 418 LIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAK 477

Query: 480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
           LEFFY+QAP++M+SL ++ S T++A+GN++SS L++ V+ I+ K G  GWI +NLN   L
Sbjct: 478 LEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNESRL 536

Query: 540 HYFF 543
            Y++
Sbjct: 537 DYYY 540

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2

 Score =  458 bits (1179), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/556 (43%), Positives = 356/556 (64%), Gaps = 12/556 (2%)

Query: 2   GEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQL 61
           GEEE   T+DGT+DY G P+ ++ +G W A   IL N+    LA++G+  NLV +    L
Sbjct: 17  GEEE---TRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVL 73

Query: 62  DQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVS 121
            Q+++ A+ NV  W+GT YI  L+GAFL+D+Y GRY T AIF +I+VIG++ L++++ + 
Sbjct: 74  QQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMF 133

Query: 122 GLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK 181
            ++P   G         +  +   F+ ++YLIALG GG +P +++ GADQFD+    E  
Sbjct: 134 LIRPRGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGY 193

Query: 182 HKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN 241
            K +FF++FY ++N+G+L ++++L + +D   W  GF     +  I ++ F  GT  +R 
Sbjct: 194 SKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRY 253

Query: 242 QKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAE---SNITGSRKLDHTKDFSF 298
            KP G+PL+R CQV+ A+ +K  VE P          D+E   +++   R++ HT +F F
Sbjct: 254 FKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKF 313

Query: 299 FDKAA---VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSL 355
            DKAA        D  ++SVNPWRLC VTQVEE+K I+RL+PIW   II+S V++QM+SL
Sbjct: 314 LDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASL 373

Query: 356 FVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGH-KNGLTQ 414
           FV QG  M+T V  S FKIPPAS+S FD LSV  ++ +Y R + PV  +F  +   G+T+
Sbjct: 374 FVEQGAAMNTSV--SDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITE 431

Query: 415 LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVF 474
           L RMGIGL I++++MIAA ++E  RL+   +   +      +SI WQ PQY LIG +EVF
Sbjct: 432 LHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVF 491

Query: 475 TFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNL 534
            ++GQLEFF  Q PD ++S  SAL + ++++GN++SSLLVT+V  IST++   GWIP NL
Sbjct: 492 MYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNL 551

Query: 535 NRGHLHYFFWLLTWYT 550
           N+GHL  F++LL   T
Sbjct: 552 NKGHLDRFYFLLAALT 567

Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2

 Score =  456 bits (1173), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/554 (43%), Positives = 355/554 (64%), Gaps = 15/554 (2%)

Query: 6   DIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSS 65
           ++ T+DG++D  GNPA +  TG W     IL N+    LA++G+  NLV +    + Q +
Sbjct: 9   EVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDN 68

Query: 66  STASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 125
           + A+ NV  W+GT YI  L+GAFL+D+Y GRY T AIF   +V G+  L+++     L+P
Sbjct: 69  AEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEP 128

Query: 126 VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS 185
              G         +  ++  F++++YLIALG GG +P ++++GADQFD  D  E   K +
Sbjct: 129 SGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIA 188

Query: 186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPG 245
           FF++FY ++N+G+L +++VL + +D   W  GF   A +    +V F  GT  +R+  P 
Sbjct: 189 FFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPR 248

Query: 246 GSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVE 305
            SP +R CQV+ A+ RK K+++  ++  LY   D+E+  TG +K+ HTK F F D+AA+ 
Sbjct: 249 ESPWSRFCQVLVAATRKAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAI- 304

Query: 306 IQSDNIKESV------NPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
           +  D+  E V      +PWRLC+VTQVEE+K ++RLLPIW   I++S V++QM+SLFV+Q
Sbjct: 305 VTPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQ 364

Query: 360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKF--TGHKNGLTQLQR 417
           G  M T++ N  F+IP +S+S FD LSV F++  Y RF+ P+  +   T    GLT+LQR
Sbjct: 365 GAAMKTNIKN--FRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQR 422

Query: 418 MGIGLFISILSMIAAAVLELIRLRMVR-EHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTF 476
           MGIGL I+I++MI+A ++E+ RL+    E          +SI WQVPQY LIG +EVF +
Sbjct: 423 MGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMY 482

Query: 477 IGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNR 536
           +GQLEFF  QAP  ++S  SAL + +++LGNY+SSLLV+IV  IST +   GWIP+NLN+
Sbjct: 483 VGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNK 542

Query: 537 GHLHYFFWLLTWYT 550
           GHL  F++LL   T
Sbjct: 543 GHLERFYFLLAGLT 556

Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/547 (42%), Positives = 351/547 (64%), Gaps = 13/547 (2%)

Query: 3   EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
           E  D YTKDGT+D +GN   +++TG WKAC F++  E  ER+AYYG+S+NLV Y   +L 
Sbjct: 5   EVGDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLH 64

Query: 63  QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
           Q +  +S NV +W GT ++TP++GA++ADA+ GRY T  I S IY++GM  LT++ S+ G
Sbjct: 65  QGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPG 124

Query: 123 LKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK 181
           LKP        E C+     Q A FF ALY +A+GTGG KP +S+ GADQFD+ D  +K 
Sbjct: 125 LKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKI 184

Query: 182 HKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN 241
           HK SFFNW+ FSI  G   A++VLV++QDN GW  G+G+  + +A ++  F  GTRL+R+
Sbjct: 185 HKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRH 244

Query: 242 QKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 301
           + P GSP T++ +V+ AS+RK +  + +D +  YE    E     +  +  T    F ++
Sbjct: 245 KLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNR 304

Query: 302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
           A+++        S + WRLCT+T+VEE K ++++LP+     + S + +Q+ +LF+ QG 
Sbjct: 305 ASLKTG------STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGT 358

Query: 362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
            +D  + N +F IPPASL  F T S++  + IYDR  V   RK TG+  G+T LQRMGIG
Sbjct: 359 TLDRRLTN-NFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIG 417

Query: 422 LFISILSMIAAAVLELIRLRMVREH--NYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
           + + IL MI A++ E  RL++  EH   +     +P+SI   +PQY L+G A+ F  I +
Sbjct: 418 MILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAK 477

Query: 480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
           LEFFY+QAP++M+SL ++ + T++A+G ++SS+L++ V+ I+ K G  GWI +NLN   L
Sbjct: 478 LEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNNLNESRL 536

Query: 540 --HYFFW 544
             +Y F+
Sbjct: 537 DNYYMFF 543

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
356566147	572	PREDICTED: peptide transporter PTR1-like	0.992	0.970	0.789	0.0
356539537	572	PREDICTED: peptide transporter PTR1-like	0.992	0.970	0.791	0.0
224054566	570	predicted protein [Populus trichocarpa]	0.989	0.970	0.775	0.0
224104319	570	predicted protein [Populus trichocarpa]	0.989	0.970	0.774	0.0
255558808	571	peptide transporter, putative [Ricinus c	0.991	0.970	0.755	0.0
395146502	571	putative peptide transporter [Linum usit	0.989	0.968	0.760	0.0
225434680	582	PREDICTED: peptide transporter PTR1-like	0.987	0.948	0.767	0.0
297745947	569	unnamed protein product [Vitis vinifera]	0.987	0.970	0.767	0.0
449450790	570	PREDICTED: peptide transporter PTR1-like	0.991	0.971	0.756	0.0
449496606	570	PREDICTED: LOW QUALITY PROTEIN: peptide	0.991	0.971	0.756	0.0

>gi|356566147|ref|XP_003551296.1| PREDICTED: peptide transporter PTR1-like [Glycine max]

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/571 (78%), Positives = 500/571 (87%), Gaps = 16/571 (2%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           E+D YTKDGT+DY GNPA+K +TGTWKACP+ILGNECCERLAYYGMSTNLV YFK++L+Q
Sbjct: 3   EDDGYTKDGTVDYCGNPANKKETGTWKACPYILGNECCERLAYYGMSTNLVLYFKNRLNQ 62

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
            S+TASKNV +WSGTCYITPLIGA+LAD+YLGRYWTIA+FSIIY IGMT LT++ASV G+
Sbjct: 63  HSATASKNVSNWSGTCYITPLIGAYLADSYLGRYWTIAVFSIIYAIGMTLLTLSASVPGI 122

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           KP CHG  G+E C+ T  +SA  F+ALYLIALGTGGIKPCVSSYGADQFDD D AEK+ K
Sbjct: 123 KPTCHG-HGDENCRATTLESAVCFLALYLIALGTGGIKPCVSSYGADQFDDTDSAEKERK 181

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           SSFFNWFYFSINIGALIASS+LVWIQDN GWGWGFGIPAVAMAIAVVSFFSGTRL+RNQK
Sbjct: 182 SSFFNWFYFSINIGALIASSLLVWIQDNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQK 241

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGS +TRICQVV ASIRK+ VE+PAD+SLLYETA+ ES I GSRKLDHT +  FFDKAA
Sbjct: 242 PGGSAITRICQVVMASIRKYNVEVPADESLLYETAETESAIKGSRKLDHTNELRFFDKAA 301

Query: 304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 363
           V  QSD +KES NPWRLCTVTQVEELK+I+R+LP+WATGIIFS VY QMS+LFVLQG+ M
Sbjct: 302 VLAQSDKVKESTNPWRLCTVTQVEELKSILRILPVWATGIIFSTVYGQMSTLFVLQGQTM 361

Query: 364 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423
           DT VGNS+FKIPPASLSIFDTLSVIFWVP+YDR IVP+  KFTG+KNGLTQLQRMGIGLF
Sbjct: 362 DTRVGNSTFKIPPASLSIFDTLSVIFWVPVYDRIIVPIATKFTGNKNGLTQLQRMGIGLF 421

Query: 424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 483
           ISI SM+AAA+LELIRLRMVR HNYY L E+PM+I WQVPQYF+IGCAEVF FIGQLEFF
Sbjct: 422 ISIFSMVAAAILELIRLRMVRRHNYYQLEEIPMTIFWQVPQYFIIGCAEVFYFIGQLEFF 481

Query: 484 YEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFF 543
           YEQAPDAMRS CSALSLTTVALG YLSSLLVTIVT IST+NG+ GWIPDNLN GH+ YFF
Sbjct: 482 YEQAPDAMRSFCSALSLTTVALGQYLSSLLVTIVTKISTRNGSPGWIPDNLNFGHIDYFF 541

Query: 544 WLLT---------------WYTYKRPVGSLR 559
           WLL                 YTYKRPVG+LR
Sbjct: 542 WLLALLSVVNLIAFLVVSMLYTYKRPVGTLR 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539537|ref|XP_003538254.1| PREDICTED: peptide transporter PTR1-like [Glycine max]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/571 (79%), Positives = 497/571 (87%), Gaps = 16/571 (2%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           E+D YTKDGT+DY GNPA+K +TGTWKACPFILGNECCERLAYYGMSTNLV YFK +L Q
Sbjct: 3   EDDGYTKDGTVDYCGNPANKKETGTWKACPFILGNECCERLAYYGMSTNLVLYFKKRLHQ 62

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
            S+ ASKNV +WSGTCYITPL+GAFLAD+YLGRYWTIA+FSIIY IGMT LT++ASV G+
Sbjct: 63  HSAIASKNVSNWSGTCYITPLVGAFLADSYLGRYWTIAVFSIIYAIGMTLLTLSASVPGI 122

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           KP CHG  G+E C  T  +SA  F+ALYLIALGTGGIKPCVSSYGADQFDD D AEK+HK
Sbjct: 123 KPTCHG-HGDENCHATTLESAVCFLALYLIALGTGGIKPCVSSYGADQFDDTDPAEKEHK 181

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           SSFFNWFYFSINIGALIASS+LVWIQDN GWGWGFGIPAVAMAIAVVSFFSGTRL+RNQK
Sbjct: 182 SSFFNWFYFSINIGALIASSLLVWIQDNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQK 241

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGS LTRICQVV ASIRK+KVE+PAD+SLLYETA+ ES I GSRKLDHT +  FFDKA 
Sbjct: 242 PGGSALTRICQVVVASIRKYKVEVPADESLLYETAETESAIKGSRKLDHTDELRFFDKAT 301

Query: 304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 363
           V  +SD +KES NPWRLCTVTQVEELK+I+RLLP+WATGIIFS VY QMS+LFVLQG+ M
Sbjct: 302 VLARSDKVKESTNPWRLCTVTQVEELKSILRLLPVWATGIIFSTVYGQMSTLFVLQGQTM 361

Query: 364 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423
           DT VGNS+FKIPPASLSIFDTLSVIFWVP+YDR IVP+ RKFTG+KNGLTQLQRMGIGLF
Sbjct: 362 DTRVGNSTFKIPPASLSIFDTLSVIFWVPVYDRIIVPIARKFTGYKNGLTQLQRMGIGLF 421

Query: 424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 483
           ISI SM+AAA+LELIRLRMVR H+YY L E+PM+I WQVPQYF+IGCAEVF FIGQLEFF
Sbjct: 422 ISIFSMVAAAILELIRLRMVRRHDYYQLEEIPMTIFWQVPQYFVIGCAEVFYFIGQLEFF 481

Query: 484 YEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFF 543
           YEQAPDAMRS CSALSLTTVALG YLSSLLVTIVT I+T+NG  GWIPDNLN GH+ YFF
Sbjct: 482 YEQAPDAMRSFCSALSLTTVALGQYLSSLLVTIVTKITTRNGRPGWIPDNLNFGHIDYFF 541

Query: 544 WLLT---------------WYTYKRPVGSLR 559
           WLL                 YTYKRPVG+LR
Sbjct: 542 WLLALLSVVNLIAFLVVSMLYTYKRPVGTLR 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054566|ref|XP_002298324.1| predicted protein [Populus trichocarpa] gi|222845582|gb|EEE83129.1| predicted protein [Populus trichocarpa]

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/571 (77%), Positives = 501/571 (87%), Gaps = 18/571 (3%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           EED+YTKDGT+DY+GNPA+K +TGTW+ACP+I+GNE CERLAYYGMS+NL+ YFKH+L+Q
Sbjct: 3   EEDVYTKDGTVDYRGNPANKKETGTWRACPYIIGNEFCERLAYYGMSSNLILYFKHRLNQ 62

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
            S+TA++N L+W GTCY+TPLIGAF ADAYLGRYWTIA FSIIYV+GMT LT++A+V GL
Sbjct: 63  QSATATRNNLNWGGTCYLTPLIGAFFADAYLGRYWTIACFSIIYVMGMTLLTISATVPGL 122

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           +P C+    E+ C  TDAQSA  FV+LYLIALGTGGIKPCVSSYGADQFDDADE EKKHK
Sbjct: 123 RPKCYA---EDDCNPTDAQSALAFVSLYLIALGTGGIKPCVSSYGADQFDDADEVEKKHK 179

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           SSFFNWFY SIN+GALIA SVLVW+QDN  WGWGFGIPA+AMAIAV SFFSGTRLFR QK
Sbjct: 180 SSFFNWFYLSINVGALIAGSVLVWVQDNVSWGWGFGIPAIAMAIAVASFFSGTRLFRYQK 239

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGSPLTRICQV+ AS RK KVE+PADK+LLYETADAESNI GSRKLDHT++FSF DKAA
Sbjct: 240 PGGSPLTRICQVLLASFRKKKVEVPADKALLYETADAESNIKGSRKLDHTEEFSFLDKAA 299

Query: 304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 363
           VE + D+IK  V+PWRLCTVTQVEELK+I+RLLPIWATGIIF+AVYSQM +LFVLQGE+M
Sbjct: 300 VETEKDDIKGPVDPWRLCTVTQVEELKSIIRLLPIWATGIIFTAVYSQMGNLFVLQGEQM 359

Query: 364 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423
           D +VGNS+F+IP ASLSIFDTLSVIFWVP+YDR IVPV RK+TGHKNGLTQLQRMGIGLF
Sbjct: 360 DKYVGNSNFQIPSASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHKNGLTQLQRMGIGLF 419

Query: 424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 483
           ISI SM++AA+LEL RL MVR HN Y+L  +P+SI WQ PQYFLIGCAEVFTFIGQLEFF
Sbjct: 420 ISIFSMVSAAILELKRLEMVRRHNSYELKTVPLSIFWQAPQYFLIGCAEVFTFIGQLEFF 479

Query: 484 YEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFF 543
           YEQAPDAMRS+CSALSLTTVALG+YLSSLLVTIVTSISTKNG  GWIP+NLN GH+ YFF
Sbjct: 480 YEQAPDAMRSMCSALSLTTVALGSYLSSLLVTIVTSISTKNGKPGWIPENLNYGHIDYFF 539

Query: 544 WLL---------------TWYTYKRPVGSLR 559
           WLL                WYTYK+PVG+LR
Sbjct: 540 WLLGVLSVLNLCVFLLISNWYTYKKPVGTLR 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104319|ref|XP_002313394.1| predicted protein [Populus trichocarpa] gi|222849802|gb|EEE87349.1| predicted protein [Populus trichocarpa]

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/571 (77%), Positives = 498/571 (87%), Gaps = 18/571 (3%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           EED+YTKDGT+DY GNPA++ +TGTW+ACPFI+GNE CERLAYYGMS+NLV YFKH+L+Q
Sbjct: 3   EEDVYTKDGTVDYLGNPANRKETGTWRACPFIIGNEFCERLAYYGMSSNLVLYFKHRLNQ 62

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
           SS+TA++N L+W GTCY+TPLIGAF+ADAYLGRYWTIA FS IYV GMT LT++A+V GL
Sbjct: 63  SSATATRNNLNWGGTCYLTPLIGAFVADAYLGRYWTIASFSTIYVAGMTLLTMSATVHGL 122

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           +P C+    ++ C  T  Q+A  FVALYLIALGTGGIKPCVSSYGADQFDDADE EKKHK
Sbjct: 123 RPECYS---KDHCHPTGGQTAVTFVALYLIALGTGGIKPCVSSYGADQFDDADETEKKHK 179

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           SSFFNWFY SIN+GALIA SVLVWIQDN  WGWGFGIPA+AMAIAVVSFFSGT+LFR QK
Sbjct: 180 SSFFNWFYLSINVGALIAGSVLVWIQDNVSWGWGFGIPAIAMAIAVVSFFSGTKLFRYQK 239

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGSPLTRICQV+ AS RK KVE+PADKSLL+ETADAESNI GSRKLDHT++FSF DKAA
Sbjct: 240 PGGSPLTRICQVLVASFRKQKVEVPADKSLLHETADAESNIKGSRKLDHTEEFSFLDKAA 299

Query: 304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 363
           VE + D+IK + +PW LCTVTQVEELKAI+RLLPIWATGIIFSAVYSQM +LFVLQGE M
Sbjct: 300 VETEKDDIKGTGDPWNLCTVTQVEELKAIIRLLPIWATGIIFSAVYSQMGNLFVLQGETM 359

Query: 364 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423
           D  VGNS+F+IP ASLSIFDTLSVIFWVP+YDR IVPV RKFTGHKNGLTQLQRMGIGLF
Sbjct: 360 DKFVGNSTFEIPSASLSIFDTLSVIFWVPVYDRIIVPVARKFTGHKNGLTQLQRMGIGLF 419

Query: 424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 483
           ISI +M++AA+LEL RL+MVR +NYY+L  +P+SI WQVPQYFLIGCAEVFTFIGQLEFF
Sbjct: 420 ISIFAMVSAAILELKRLQMVRNNNYYELDSVPISIFWQVPQYFLIGCAEVFTFIGQLEFF 479

Query: 484 YEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFF 543
           YEQAPDAMRS+CSALSLTTVALGNYLSSLLVTIVT+ISTKNG  GWIPDNLN GH+ YFF
Sbjct: 480 YEQAPDAMRSMCSALSLTTVALGNYLSSLLVTIVTTISTKNGKAGWIPDNLNYGHIDYFF 539

Query: 544 WLL---------------TWYTYKRPVGSLR 559
           WLL                WYTYK+ +G+LR
Sbjct: 540 WLLGMLSVLNLGAFLLISNWYTYKKAIGTLR 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558808|ref|XP_002520427.1| peptide transporter, putative [Ricinus communis] gi|223540269|gb|EEF41840.1| peptide transporter, putative [Ricinus communis]

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/573 (75%), Positives = 502/573 (87%), Gaps = 19/573 (3%)

Query: 3   EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
           EEEDIYTKDGT+DY+GNPA K KTGTW+ACPFI+GNECCERLAYYGMS+NLV YFK+ L+
Sbjct: 2   EEEDIYTKDGTVDYRGNPASKKKTGTWRACPFIIGNECCERLAYYGMSSNLVLYFKNILN 61

Query: 63  QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
           QSS+TA+KN  DWSGTCY TPLIGAFLADAY GRYWTIAIFSIIYVIGMT L ++AS+ G
Sbjct: 62  QSSATATKNNSDWSGTCYTTPLIGAFLADAYFGRYWTIAIFSIIYVIGMTLLALSASIPG 121

Query: 123 LKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH 182
           +KP C+    ++ C  TDAQSA FF+ALYL+ALGTGGIKPCVSSYGADQFDD DE EKKH
Sbjct: 122 IKPKCYA---KDDCDPTDAQSAVFFLALYLVALGTGGIKPCVSSYGADQFDDTDENEKKH 178

Query: 183 KSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ 242
           K SFFNWFYFSIN+G LIASSVLV++Q N  WGWGFGIPA+AMAIAVVSFFSGT+L+RNQ
Sbjct: 179 KGSFFNWFYFSINVGGLIASSVLVYVQMNWSWGWGFGIPAIAMAIAVVSFFSGTKLYRNQ 238

Query: 243 KPGGSPLTRICQVVAASIRKHKVELPADKSLLYETA-DAESNITGSRKLDHTKDFSFFDK 301
           KPGGSP TR+ QV+ ASI+K+K+++PADK+LLYE + DAESNI GSR++DHTKDFSFFDK
Sbjct: 239 KPGGSPFTRLFQVIVASIKKYKIKVPADKALLYEISNDAESNIKGSRRIDHTKDFSFFDK 298

Query: 302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
           AAVE ++DN+K+SV+PW+LCTVTQVEELK+I+RLLP+WATGIIF+AVYSQMS+LFVLQG+
Sbjct: 299 AAVETETDNVKDSVDPWKLCTVTQVEELKSIIRLLPVWATGIIFAAVYSQMSNLFVLQGD 358

Query: 362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
           +M+ +VGNSSFKIP ASLS+FDTLSVIFWVPIYDR + P  RKFTGHKNG TQLQRMGIG
Sbjct: 359 QMNKYVGNSSFKIPSASLSVFDTLSVIFWVPIYDRILAPFVRKFTGHKNGFTQLQRMGIG 418

Query: 422 LFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 481
           L IS+ +M++AAVLEL RL+MVR HNYY+L E+P+S+ WQVPQYFLIGCAEVFTFIGQLE
Sbjct: 419 LVISVFAMVSAAVLELTRLQMVRRHNYYELKEVPISVFWQVPQYFLIGCAEVFTFIGQLE 478

Query: 482 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHY 541
           FFY++APDAMRSLCSALSLTTVALGNYLSSLLVTI  SI+ +NG  GWIPDNLN GH+ Y
Sbjct: 479 FFYQEAPDAMRSLCSALSLTTVALGNYLSSLLVTITMSITARNGKPGWIPDNLNYGHIDY 538

Query: 542 FFWLLT---------------WYTYKRPVGSLR 559
           FFW+L                WYTYK P+G+LR
Sbjct: 539 FFWVLAVLSVLNLGAFLFISKWYTYKTPLGTLR 571

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146502|gb|AFN53657.1| putative peptide transporter [Linum usitatissimum]

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/572 (76%), Positives = 490/572 (85%), Gaps = 19/572 (3%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           EE+  TKDGTLD+KGNPADK  TGTWKACPFI+GNECCERLAYYGMS+NLV YFK+QL+Q
Sbjct: 3   EEEFLTKDGTLDHKGNPADKRITGTWKACPFIIGNECCERLAYYGMSSNLVLYFKNQLNQ 62

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
           SS+TA+KN  DWSGTCY+TPL+GAFLADAYLGRYWTIA FSIIYV GMT L ++ASV GL
Sbjct: 63  SSATATKNNSDWSGTCYLTPLLGAFLADAYLGRYWTIAGFSIIYVFGMTLLAMSASVPGL 122

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           KP C     ++ C  T+ QSA FFVALY+IALGTGGIKPCVSSYGADQFDDAD  EK+HK
Sbjct: 123 KPTC---ISKDNCHATEGQSAVFFVALYMIALGTGGIKPCVSSYGADQFDDADVEEKEHK 179

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           +SFFNWFYFSIN+GAL+ASS+LVW+Q+N  WG GFGIPA+AMAIAV SFFSGTR +R Q 
Sbjct: 180 ASFFNWFYFSINVGALVASSLLVWVQENVSWGLGFGIPAIAMAIAVASFFSGTRKYRYQT 239

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGSPLTRICQV+ AS RK+KV  P DKSLLYE+AD+ES ITGSRKLDHTKDFSF DKAA
Sbjct: 240 PGGSPLTRICQVIVASCRKYKVSPPNDKSLLYESADSESGITGSRKLDHTKDFSFLDKAA 299

Query: 304 VEIQSDNIKE-SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGER 362
           VE + D+IK+ SVNPWRLCTVTQ+EE KAI+RLLPIWATGI+F+AVYSQMS+LFVLQG+ 
Sbjct: 300 VETEKDHIKDTSVNPWRLCTVTQIEEFKAIIRLLPIWATGIVFAAVYSQMSNLFVLQGDT 359

Query: 363 MDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGL 422
           MD  VGNS FKI  A++S+FDT+SVIFWVPIYDR IVP  RK TGHKNG TQLQRMGIGL
Sbjct: 360 MDKRVGNSKFKISAANVSVFDTISVIFWVPIYDRLIVPAVRKITGHKNGFTQLQRMGIGL 419

Query: 423 FISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEF 482
            ISI +M+  A+LELIRL+MVREHNYY+L  +P+SI WQVPQYFLIGCAEVFTFIGQLEF
Sbjct: 420 VISIFAMVYPAILELIRLKMVREHNYYELESVPISIFWQVPQYFLIGCAEVFTFIGQLEF 479

Query: 483 FYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYF 542
           FYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT ++TK G  GWIPDNLN GH+ YF
Sbjct: 480 FYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTGVTTKGGKPGWIPDNLNYGHVDYF 539

Query: 543 FWLL---------------TWYTYKRPVGSLR 559
           FWLL               +WYTYK+PVG+LR
Sbjct: 540 FWLLAVLSVVNLMAYMVIASWYTYKKPVGTLR 571

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434680|ref|XP_002280463.1| PREDICTED: peptide transporter PTR1-like [Vitis vinifera]

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/571 (76%), Positives = 492/571 (86%), Gaps = 19/571 (3%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           EED YTKDGT++Y+GNPA+K KTGTW ACP+ILGNE CERLAYYGMS+NLV YFK++L Q
Sbjct: 16  EEDNYTKDGTINYQGNPANKKKTGTWTACPYILGNEFCERLAYYGMSSNLVLYFKYKLHQ 75

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
            S+TASKNVL+WSGTCY+TP IGAFLADAYLGRYWTIA FSIIYVIGMT LTVTASV GL
Sbjct: 76  DSATASKNVLNWSGTCYLTPFIGAFLADAYLGRYWTIASFSIIYVIGMTLLTVTASVPGL 135

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           KP C  P G   C  T+ Q+A  F+ALYL+ALGTGGIKPCVSSYGADQFDD DE EK HK
Sbjct: 136 KPNC-SPSG--VCDPTETQTAVCFLALYLVALGTGGIKPCVSSYGADQFDDTDEHEKTHK 192

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           SSFFNWFY SIN+GALIA S+LVWIQ+N GWG GFGIPA AMAIAVVSFFSGTRL+RNQK
Sbjct: 193 SSFFNWFYLSINVGALIAGSILVWIQENIGWGVGFGIPAAAMAIAVVSFFSGTRLYRNQK 252

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGSPLTR+ QVV AS++K++V++PADKSLLYE AD ES I GSRKLDHTKD SFFDKAA
Sbjct: 253 PGGSPLTRMSQVVVASLKKYRVQVPADKSLLYEIADGESGIQGSRKLDHTKDLSFFDKAA 312

Query: 304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 363
           VEIQSD+IK+S +PW++CTVTQVEELKAI+RLLP+WATGIIFSAVYSQM SLFV+QGE M
Sbjct: 313 VEIQSDHIKDSPDPWKICTVTQVEELKAIIRLLPVWATGIIFSAVYSQMGSLFVVQGESM 372

Query: 364 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423
           D H+G   F+IP ASLSIFDT+SVIFWVPIYDR IVPV RKFTGH NG+TQLQRMGIGLF
Sbjct: 373 DPHMGR-HFEIPSASLSIFDTISVIFWVPIYDRIIVPVARKFTGHSNGITQLQRMGIGLF 431

Query: 424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 483
           ISI +M++A +LE++RL +V+ HNYYD   +P+SI +QVPQYF+IGCAEVFTFIGQLEFF
Sbjct: 432 ISIFAMLSAGILEVVRLGIVKRHNYYDHDRIPLSIFYQVPQYFIIGCAEVFTFIGQLEFF 491

Query: 484 YEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFF 543
           YEQAPDAMRS CSALSL TVALGNYLSSLLVTIVT +ST+ G LGWIPDNLNRGHLHYFF
Sbjct: 492 YEQAPDAMRSFCSALSLATVALGNYLSSLLVTIVTDVSTRGGKLGWIPDNLNRGHLHYFF 551

Query: 544 WLLT---------------WYTYKRPVGSLR 559
           +LL                WYTYKR VG+LR
Sbjct: 552 FLLAILSVLNLVAFLFVAKWYTYKRAVGTLR 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745947|emb|CBI16003.3| unnamed protein product [Vitis vinifera]

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/571 (76%), Positives = 492/571 (86%), Gaps = 19/571 (3%)

Query: 4   EEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ 63
           EED YTKDGT++Y+GNPA+K KTGTW ACP+ILGNE CERLAYYGMS+NLV YFK++L Q
Sbjct: 3   EEDNYTKDGTINYQGNPANKKKTGTWTACPYILGNEFCERLAYYGMSSNLVLYFKYKLHQ 62

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
            S+TASKNVL+WSGTCY+TP IGAFLADAYLGRYWTIA FSIIYVIGMT LTVTASV GL
Sbjct: 63  DSATASKNVLNWSGTCYLTPFIGAFLADAYLGRYWTIASFSIIYVIGMTLLTVTASVPGL 122

Query: 124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK 183
           KP C  P G   C  T+ Q+A  F+ALYL+ALGTGGIKPCVSSYGADQFDD DE EK HK
Sbjct: 123 KPNC-SPSG--VCDPTETQTAVCFLALYLVALGTGGIKPCVSSYGADQFDDTDEHEKTHK 179

Query: 184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           SSFFNWFY SIN+GALIA S+LVWIQ+N GWG GFGIPA AMAIAVVSFFSGTRL+RNQK
Sbjct: 180 SSFFNWFYLSINVGALIAGSILVWIQENIGWGVGFGIPAAAMAIAVVSFFSGTRLYRNQK 239

Query: 244 PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA 303
           PGGSPLTR+ QVV AS++K++V++PADKSLLYE AD ES I GSRKLDHTKD SFFDKAA
Sbjct: 240 PGGSPLTRMSQVVVASLKKYRVQVPADKSLLYEIADGESGIQGSRKLDHTKDLSFFDKAA 299

Query: 304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 363
           VEIQSD+IK+S +PW++CTVTQVEELKAI+RLLP+WATGIIFSAVYSQM SLFV+QGE M
Sbjct: 300 VEIQSDHIKDSPDPWKICTVTQVEELKAIIRLLPVWATGIIFSAVYSQMGSLFVVQGESM 359

Query: 364 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423
           D H+G   F+IP ASLSIFDT+SVIFWVPIYDR IVPV RKFTGH NG+TQLQRMGIGLF
Sbjct: 360 DPHMGR-HFEIPSASLSIFDTISVIFWVPIYDRIIVPVARKFTGHSNGITQLQRMGIGLF 418

Query: 424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 483
           ISI +M++A +LE++RL +V+ HNYYD   +P+SI +QVPQYF+IGCAEVFTFIGQLEFF
Sbjct: 419 ISIFAMLSAGILEVVRLGIVKRHNYYDHDRIPLSIFYQVPQYFIIGCAEVFTFIGQLEFF 478

Query: 484 YEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFF 543
           YEQAPDAMRS CSALSL TVALGNYLSSLLVTIVT +ST+ G LGWIPDNLNRGHLHYFF
Sbjct: 479 YEQAPDAMRSFCSALSLATVALGNYLSSLLVTIVTDVSTRGGKLGWIPDNLNRGHLHYFF 538

Query: 544 WLLT---------------WYTYKRPVGSLR 559
           +LL                WYTYKR VG+LR
Sbjct: 539 FLLAILSVLNLVAFLFVAKWYTYKRAVGTLR 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450790|ref|XP_004143145.1| PREDICTED: peptide transporter PTR1-like [Cucumis sativus]

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/575 (75%), Positives = 494/575 (85%), Gaps = 21/575 (3%)

Query: 1   MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ 60
           MGEE+ IYT+DGT+DY+G+PA +T+TGTW+ACP+ILGNE CERLAYYGMS+NLV YFK  
Sbjct: 1   MGEEDSIYTQDGTVDYRGDPAVRTQTGTWRACPYILGNEFCERLAYYGMSSNLVLYFKDH 60

Query: 61  LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV 120
           L+Q S+TASKNV +W GTCYITPLIGAFLADAYLGRY TIA FSI+YV GMT LT++ASV
Sbjct: 61  LNQHSATASKNVNNWIGTCYITPLIGAFLADAYLGRYRTIAAFSILYVFGMTLLTLSASV 120

Query: 121 SGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
            GLKP C     ++ C  T AQSA  F+ALYLIALGTGGIKPCVSSYGADQFDDADE EK
Sbjct: 121 PGLKPTC---VSKDDCHATTAQSALCFLALYLIALGTGGIKPCVSSYGADQFDDADETEK 177

Query: 181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
           KHKSSFFNWFY SIN+G LIASSVLVW+Q+N  WGWGFGIPA+AMAIAVVSFFSGTRL+R
Sbjct: 178 KHKSSFFNWFYLSINVGGLIASSVLVWVQENVSWGWGFGIPAIAMAIAVVSFFSGTRLYR 237

Query: 241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 300
           NQKPGGSP TRICQV+ AS RK+KV++P  K+L YETAD+ES+I GSRKLDHT DF FFD
Sbjct: 238 NQKPGGSPFTRICQVIVASFRKYKVKVPESKAL-YETADSESSIVGSRKLDHTDDFRFFD 296

Query: 301 KAAVEIQSDN-IKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
           KAAVE++SD  +K SV+ W+LCTVTQVEELKAI+RLLP+WATGI F+AVYSQ+S+LFVLQ
Sbjct: 297 KAAVELESDQMLKGSVDRWKLCTVTQVEELKAIIRLLPVWATGITFAAVYSQISTLFVLQ 356

Query: 360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG 419
           G+RMD H+G  +F+IP ASLSIFDTLSVIFWVP+YDR IVPV RK+TGH NG+TQLQRMG
Sbjct: 357 GDRMDPHIG-PNFEIPAASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHSNGITQLQRMG 415

Query: 420 IGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
           IGLFISIL+M++AA+LEL+RL+ VR HNYY+L  MPMSI WQVPQYFLIGCAEVFTFIGQ
Sbjct: 416 IGLFISILAMLSAAILELVRLQDVRRHNYYELKHMPMSIFWQVPQYFLIGCAEVFTFIGQ 475

Query: 480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
           LEFFYEQAPDAMRSL SALSLTTVALGNYLSSLLVTIV   STK G LGWIPDNLN GH+
Sbjct: 476 LEFFYEQAPDAMRSLGSALSLTTVALGNYLSSLLVTIVNKASTKGGRLGWIPDNLNYGHV 535

Query: 540 HYFFWLLT---------------WYTYKRPVGSLR 559
           HYFF+LL                WY YKRP+G+LR
Sbjct: 536 HYFFFLLAILSIKNLIAFFVIAKWYKYKRPIGTLR 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496606|ref|XP_004160177.1| PREDICTED: LOW QUALITY PROTEIN: peptide transporter PTR1-like [Cucumis sativus]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/575 (75%), Positives = 493/575 (85%), Gaps = 21/575 (3%)

Query: 1   MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ 60
           MGEE+ IYT+DGT+DY+G+PA +T+TGTW+ACP+ILGNE CERLAYYGMS+NLV YFK  
Sbjct: 1   MGEEDSIYTQDGTVDYRGDPAVRTQTGTWRACPYILGNEFCERLAYYGMSSNLVLYFKDH 60

Query: 61  LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV 120
           L+Q S+TASKNV +W GTCYITPLIGAFLADAYLGRY TIA FSI+YV GMT LT++ASV
Sbjct: 61  LNQHSATASKNVNNWIGTCYITPLIGAFLADAYLGRYRTIAAFSILYVFGMTLLTLSASV 120

Query: 121 SGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
            GLKP C     ++ C  T AQSA  F+ALYLIALGTGGIKPCVSSYGADQFDDADE EK
Sbjct: 121 PGLKPTC---VSKDDCHATTAQSALCFLALYLIALGTGGIKPCVSSYGADQFDDADETEK 177

Query: 181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
           KHKSSFFNWFY SIN+G LIASSVLVW+Q+N  WGWGFGIPA+AMAIAVVSFFSGTRL+R
Sbjct: 178 KHKSSFFNWFYLSINVGGLIASSVLVWVQENVSWGWGFGIPAIAMAIAVVSFFSGTRLYR 237

Query: 241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 300
           NQKPGGSP TRICQV+ AS RK+KV++P  K+L YETAD+ES+I GSRKLDHT DF FFD
Sbjct: 238 NQKPGGSPFTRICQVIVASFRKYKVKVPESKAL-YETADSESSIVGSRKLDHTDDFRFFD 296

Query: 301 KAAVEIQSDN-IKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
           KAAVE++SD  +K SV+ W+LCTVTQVEELKAI+RLLP+WATGI F+AVYSQ+S+LFVLQ
Sbjct: 297 KAAVELESDQMLKGSVDRWKLCTVTQVEELKAIIRLLPVWATGITFAAVYSQISTLFVLQ 356

Query: 360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG 419
           G+RMD H+G  +F+IP ASLSIFDTLSVIFWVP+YDR IVPV RK+TGH NG+TQLQRMG
Sbjct: 357 GDRMDPHIG-PNFEIPAASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHSNGITQLQRMG 415

Query: 420 IGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
           IGLFISIL+M++AA+LEL+RL+ VR HNYY+L  MPMSI WQVPQYFLIGCAEVFTFIGQ
Sbjct: 416 IGLFISILAMLSAAILELVRLQDVRRHNYYELKHMPMSIFWQVPQYFLIGCAEVFTFIGQ 475

Query: 480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
           LEFFYEQAPDAMRSL SALSLTTVALGNYLSSLLVTIV   STK G LGWIPDNLN GH+
Sbjct: 476 LEFFYEQAPDAMRSLGSALSLTTVALGNYLSSLLVTIVNKASTKGGRLGWIPDNLNYGHV 535

Query: 540 HYFFWLLT---------------WYTYKRPVGSLR 559
           HYFF LL                WY YKRP+G+LR
Sbjct: 536 HYFFXLLAILSIKNLIAFLXIAKWYKYKRPIGTLR 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.974	0.956	0.698	2.9e-213
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.985	0.966	0.666	1.3e-210
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.960	0.917	0.633	5.4e-189
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.942	0.893	0.587	4.1e-175
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.490	0.502	0.575	3.6e-161
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.937	0.879	0.461	3.7e-126
TAIR|locus:2033776	614	NRT1.5 "nitrate transporter 1.	0.966	0.879	0.441	2.3e-119
TAIR|locus:2119058	589	NRT1.8 "NITRATE TRANSPORTER 1.	0.964	0.915	0.431	1.6e-118
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.955	0.911	0.425	1.6e-118
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.953	0.915	0.430	6.9e-118

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2061 (730.6 bits), Expect = 2.9e-213, P = 2.9e-213
 Identities = 384/550 (69%), Positives = 456/550 (82%)

Query:     3 EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
             EE+D+YT+DGT+D   NPA+K KTG WKAC FILGNECCERLAYYGM TNLV Y + +L+
Sbjct:     2 EEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61

Query:    63 QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
             Q ++TA+ NV +WSGTCYITPLIGAF+ADAYLGRYWTIA F  IYV GMT LT++ASV G
Sbjct:    62 QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121

Query:   123 LKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH 182
             LKP   G    +TC    +Q+A FFVALY+IALGTGGIKPCVSS+GADQFD+ DE EK  
Sbjct:   122 LKP---GNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIK 178

Query:   183 KSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ 242
             KSSFFNWFYFSIN+GALIA++VLVWIQ N GWGWGFG+P VAM IAV  FF G+R +R Q
Sbjct:   179 KSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ 238

Query:   243 KPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKA 302
             +PGGSPLTRI QV+ A+ RK  V++P DKSLL+ETAD ESNI GSRKL HT +  FFDKA
Sbjct:   239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA 298

Query:   303 AVEIQSDNIKES-VNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
             AVE QSD+IK+  VNPWRLC+VTQVEELK+I+ LLP+WATGI+F+ VYSQMS++FVLQG 
Sbjct:   299 AVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGN 358

Query:   362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
              MD H+G + F+IP ASLS+FDT+SV+FW P+YD+FI+P+ RKFT ++ G TQLQRMGIG
Sbjct:   359 TMDQHMGKN-FEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIG 417

Query:   422 LFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 481
             L +SI +MI A VLE++RL  V+ HN YD  ++ MSI WQ+PQY LIGCAEVFTFIGQLE
Sbjct:   418 LVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLE 477

Query:   482 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHY 541
             FFY+QAPDAMRSLCSALSLTTVALGNYLS++LVT+V  I+ KNG  GWIPDNLNRGHL Y
Sbjct:   478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDY 537

Query:   542 FFWLLTWYTY 551
             FF+LL   ++
Sbjct:   538 FFYLLATLSF 547

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 2036 (721.8 bits), Expect = 1.3e-210, P = 1.3e-210
 Identities = 381/572 (66%), Positives = 453/572 (79%)

Query:     1 MGEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ 60
             M +++DIYTKDGTLD    PA+K KTGTWKAC FILG ECCERLAYYGMSTNL+ Y + Q
Sbjct:     1 MEDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQ 60

Query:    61 LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV 120
             ++  + +ASK+V +WSGTCY TPLIGAF+ADAYLGRYWTIA F +IY+ GMT LT++ASV
Sbjct:    61 MNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASV 120

Query:   121 SGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
              GL P C G    ETC  T  Q+A  F+ALYLIALGTGGIKPCVSS+GADQFDD DE EK
Sbjct:   121 PGLTPTCSG----ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
             + KSSFFNWFYF IN+GA+IASSVLVWIQ N GWGWG G+P VAMAIAVV FF+G+  +R
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 300
              QKPGGSPLTR+ QV+ AS RK KV++P D+SLLYE  DAES+I GSRKL+HTK  +FFD
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFD 296

Query:   301 KAAVEIQSDNIKESVNP-WRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
             KAAVE +SDN   + +  W+LCTVTQVEELKA++RLLPIWATGI+F++VYSQM ++FVLQ
Sbjct:   297 KAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQ 356

Query:   360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG 419
             G  +D H+G  +FKIP ASLS+FDTLSV+FW P+YD+ IVP  RK+TGH+ G TQLQR+G
Sbjct:   357 GNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIG 415

Query:   420 IGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
             IGL ISI SM++A +LE+ RL  V+ HN Y+   +PM+I WQVPQYFL+GCAEVFTFIGQ
Sbjct:   416 IGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQ 475

Query:   480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
             LEFFY+QAPDAMRSLCSALSLT +A GNYLS+ LVT+VT ++   G  GWI  NLN GHL
Sbjct:   476 LEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHL 535

Query:   540 HYFFWLLT---------------WYTYKRPVG 556
              YFFWLL                WYTYK+  G
Sbjct:   536 DYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTG 567

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1832 (650.0 bits), Expect = 5.4e-189, P = 5.4e-189
 Identities = 348/549 (63%), Positives = 422/549 (76%)

Query:     3 EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
             +E  +Y +DG++D+ GNP  K KTG WKACPFILGNECCERLAYYG++ NL+ Y   +L 
Sbjct:    19 QEVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLH 78

Query:    63 QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
             Q + +A+ NV  W GTCY+TPLIGA LADAY GRYWTIA FS IY IGM+ LT++ASV  
Sbjct:    79 QGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPA 138

Query:   123 LKPV-CHGPRGEETC-QVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
             LKP  C G    + C   T AQ A FF  LYLIALGTGGIKPCVSS+GADQFDD D  E+
Sbjct:   139 LKPAECIG----DFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRER 194

Query:   181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
               K+SFFNWFYFSINIGAL++SS+LVWIQ+N GWG GFGIP V M +A+ SFF GT L+R
Sbjct:   195 VRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYR 254

Query:   241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 300
              QKPGGSP+TRI QVV AS RK  V++P D +LLYET D  S I GSRK++HT D  + D
Sbjct:   255 FQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLD 314

Query:   301 KAAVEIQSDNIKES--VNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVL 358
             KAAV I  +  K     N WRLCTVTQVEELK ++R+ PIWA+GIIFSAVY+QMS++FV 
Sbjct:   315 KAAV-ISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQ 373

Query:   359 QGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM 418
             QG  M+  +G  SF++PPA+L  FDT SVI WVP+YDRFIVP+ RKFTG   G T++QRM
Sbjct:   374 QGRAMNCKIG--SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRM 431

Query:   419 GIGLFISILSMIAAAVLELIRLRMVREHNYYDL-PEMPMSIMWQVPQYFLIGCAEVFTFI 477
             GIGLF+S+L M AAA++E+IRL M  +    +    +P+S++WQ+PQYF++G AEVF FI
Sbjct:   432 GIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFI 491

Query:   478 GQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRG 537
             GQLEFFY+Q+PDAMRSLCSAL+L T ALGNYLSSL++T+VT  +T+NG  GWI DNLN G
Sbjct:   492 GQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSG 551

Query:   538 HLHYFFWLL 546
             HL YFFWLL
Sbjct:   552 HLDYFFWLL 560

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
 Identities = 317/540 (58%), Positives = 407/540 (75%)

Query:    10 KDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTAS 69
             +DG++D  GNP  K KTG WKACPFILGNECCERLAYYG++ NL+ Y+  +L +S+ +A+
Sbjct:    37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query:    70 KNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPV-CH 128
              +V+ W GTCYITPLIGA +AD+Y GRYWTIA FS IY IGM  LT++AS+  LKP  C 
Sbjct:    97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query:   129 GPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN 188
             G         T  Q A FF  LYLIALGTGGIKPCVSS+GADQFDD D  E+  K+SFFN
Sbjct:   157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query:   189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSP 248
             WFYFSINIG+ I+S++LVW+Q+N GWG GF IP V M +++ SFF GT L+R QKPGGSP
Sbjct:   217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276

Query:   249 LTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAV--EI 306
             +TR+CQV+ A+ RK K+ LP D S LYET +  S I GSRK+ HT  + F DKAAV  E 
Sbjct:   277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336

Query:   307 QSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTH 366
             +S +   S NPW+LCTVTQVEE+K ++R+ PIWA+GI++S +YSQ+S+LFV QG  M+  
Sbjct:   337 ESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRI 395

Query:   367 VGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI 426
             +   SF+IPPAS  +FDTL V+  +PIYDRF+VP  R+FTG   GLT LQRMGIGLF+S+
Sbjct:   396 I--RSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSV 453

Query:   427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQ 486
             LS+ AAA++E +RL++ ++        + MSI WQ+PQY L+G AEVF FIG++EFFY++
Sbjct:   454 LSIAAAAIVETVRLQLAQDF-------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDE 506

Query:   487 APDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLL 546
             +PDAMRS+CSAL+L   A+G+YLSSL++T+V   +   G  GW+PD+LN+GHL YFFWLL
Sbjct:   507 SPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLL 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 3.6e-161, Sum P(2) = 3.6e-161
 Identities = 163/283 (57%), Positives = 205/283 (72%)

Query:     3 EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
             EE  +Y +DG++D  GNP  K  TG WKACPFI  NECCERLAYYG++ NL+ YF ++L 
Sbjct:    20 EEVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELH 79

Query:    63 QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
             +++ +A+++V+ W GTCYITPLIGA +ADAY GRYWTIA FS IY  GM  LT++ASV G
Sbjct:    80 ETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPG 139

Query:   123 LKPV-CHGPRGEETCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK 180
             LKP  C G      C   T  QS   F  LYLIALGTGGIKPCVSS+GADQFD  D +E+
Sbjct:   140 LKPAECIG----SLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSER 195

Query:   181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240
               K+SFFNWFYF+INIGA ++S+VLVWIQ+N GW  GF IP V M +A +SFF GT L+R
Sbjct:   196 VRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYR 255

Query:   241 NQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESN 283
              QKP GSP+T +CQV+ A+ RK  +++P D +   +  DA +N
Sbjct:   256 FQKPRGSPITSVCQVLVAAYRKSNLKVPEDST---DEGDANTN 295

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 248/537 (46%), Positives = 351/537 (65%)

Query:    18 GNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSG 77
             G P ++ K G     PFI  NE CE+LA  G   N++ Y   QL    + A+  + +++G
Sbjct:    18 GRP-NRPKGGLI-TMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAG 75

Query:    78 TCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPV-CHGPRGEETC 136
             T  +TPL+GAF+AD++ GR+WTI   SIIY IGMT LT++A +  L+P  C   +GEE C
Sbjct:    76 TSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPC---KGEEVC 132

Query:   137 QVTD-AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSIN 195
              V D AQ +  +VAL L ALG+GGI+PCV ++GADQFD++D  +     ++FNW+YF + 
Sbjct:   133 VVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMG 192

Query:   196 IGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQV 255
                L+A +VLVWIQDN GWG G GIP VAM ++V++F  G +L+R+  P GSP TR+ QV
Sbjct:   193 AAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQV 252

Query:   256 VAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIK--E 313
               A+ RK K+ + +D SLLY   + ++ I+   KL HTK  SF DKAA+  + DN+K  +
Sbjct:   253 GVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQ 312

Query:   314 SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK 373
               N WRL TV +VEELK+++R+ PI A+GI+    Y+Q  +  + Q + M+ H+ NS F+
Sbjct:   313 IPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNS-FQ 371

Query:   374 IPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAA 433
             IP  S+S+F T++++  +  YDR  V V RKFTG + G+T L RMGIG  ISI++ + A 
Sbjct:   372 IPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAG 431

Query:   434 VLELIRLRMVREHNYYDLPE--MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 491
              +E+ R  +  EH   D P   +P+S +W +PQY L G AE F  IG LEFFY+QAP++M
Sbjct:   432 FVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESM 491

Query:   492 RSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDN-LNRGHLHYFFWLLT 547
             RS  +AL    +++GNY+S+LLVT+V   S K     W+PDN LNRG L YF+WL+T
Sbjct:   492 RSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLIT 548

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
 Identities = 247/560 (44%), Positives = 363/560 (64%)

Query:     2 GEEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQL 61
             GEEE   T+DGT+DY G P+ ++ +G W A   IL N+    LA++G+  NLV +    L
Sbjct:    17 GEEE---TRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVL 73

Query:    62 DQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVS 121
              Q+++ A+ NV  W+GT YI  L+GAFL+D+Y GRY T AIF +I+VIG++ L++++ + 
Sbjct:    74 QQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMF 133

Query:   122 GLKPVCHGPRGEET-CQVTDAQSAT-FFVALYLIALGTGGIKPCVSSYGADQFDDADEAE 179
              ++P   G   E T C        T F+ ++YLIALG GG +P +++ GADQFD+    E
Sbjct:   134 LIRP--RGCGDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKE 191

Query:   180 KKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLF 239
                K +FF++FY ++N+G+L ++++L + +D   W  GF     +  I ++ F  GT  +
Sbjct:   192 GYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRY 251

Query:   240 RNQKPGGSPLTRICQVVAASIRKHKVELPA-DKSLLYETADAE---SNITGSRKLDHTKD 295
             R  KP G+PL+R CQV+ A+ +K  VE P   +  +Y+  D+E   +++   R++ HT +
Sbjct:   252 RYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYD-GDSEGKNASVNTGRRIVHTDE 310

Query:   296 FSFFDKAA---VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQM 352
             F F DKAA        D  ++SVNPWRLC VTQVEE+K I+RL+PIW   II+S V++QM
Sbjct:   311 FKFLDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQM 370

Query:   353 SSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKF--TGHKN 410
             +SLFV QG  M+T V  S FKIPPAS+S FD LSV  ++ +Y R + PV  +F   G K 
Sbjct:   371 ASLFVEQGAAMNTSV--SDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSK- 427

Query:   411 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 470
             G+T+L RMGIGL I++++MIAA ++E  RL+   +   +      +SI WQ PQY LIG 
Sbjct:   428 GITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGA 487

Query:   471 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWI 530
             +EVF ++GQLEFF  Q PD ++S  SAL + ++++GN++SSLLVT+V  IST++   GWI
Sbjct:   488 SEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWI 547

Query:   531 PDNLNRGHLHYFFWLLTWYT 550
             P NLN+GHL  F++LL   T
Sbjct:   548 PRNLNKGHLDRFYFLLAALT 567

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0042128 "nitrate assimilation" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 239/554 (43%), Positives = 357/554 (64%)

Query:     6 DIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSS 65
             ++ T+DG++D  GNPA +  TG W     IL N+    LA++G+  NLV +    + Q +
Sbjct:     9 EVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDN 68

Query:    66 STASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 125
             + A+ NV  W+GT YI  L+GAFL+D+Y GRY T AIF   +V G+  L+++     L+P
Sbjct:    69 AEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEP 128

Query:   126 VCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS 184
                G   +  C+     ++  F++++YLIALG GG +P ++++GADQFD  D  E   K 
Sbjct:   129 SGCGVE-DSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKI 187

Query:   185 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKP 244
             +FF++FY ++N+G+L +++VL + +D   W  GF   A +    +V F  GT  +R+  P
Sbjct:   188 AFFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTP 247

Query:   245 GGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAV 304
               SP +R CQV+ A+ RK K+++  ++  LY   D+E+  TG +K+ HTK F F D+AA+
Sbjct:   248 RESPWSRFCQVLVAATRKAKIDVHHEELNLY---DSETQYTGDKKILHTKGFRFLDRAAI 304

Query:   305 EIQSDNIK--ES---VNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQ 359
                 D  +  ES    +PWRLC+VTQVEE+K ++RLLPIW   I++S V++QM+SLFV+Q
Sbjct:   305 VTPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQ 364

Query:   360 GERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKF--TGHKNGLTQLQR 417
             G  M T++ N  F+IP +S+S FD LSV F++  Y RF+ P+  +   T    GLT+LQR
Sbjct:   365 GAAMKTNIKN--FRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQR 422

Query:   418 MGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP-MSIMWQVPQYFLIGCAEVFTF 476
             MGIGL I+I++MI+A ++E+ RL+     +   +     +SI WQVPQY LIG +EVF +
Sbjct:   423 MGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMY 482

Query:   477 IGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNR 536
             +GQLEFF  QAP  ++S  SAL + +++LGNY+SSLLV+IV  IST +   GWIP+NLN+
Sbjct:   483 VGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNK 542

Query:   537 GHLHYFFWLLTWYT 550
             GHL  F++LL   T
Sbjct:   543 GHLERFYFLLAGLT 556

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 233/547 (42%), Positives = 351/547 (64%)

Query:     3 EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
             E  D YTKDGT+D +GN   +++TG WKAC F++  E  ER+AYYG+S+NLV Y   +L 
Sbjct:     5 EVGDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLH 64

Query:    63 QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
             Q +  +S NV +W GT ++TP++GA++ADA+ GRY T  I S IY++GM  LT++ S+ G
Sbjct:    65 QGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPG 124

Query:   123 LKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK 181
             LKP        E C+     Q A FF ALY +A+GTGG KP +S+ GADQFD+ D  +K 
Sbjct:   125 LKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKI 184

Query:   182 HKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN 241
             HK SFFNW+ FSI  G   A++VLV++QDN GW  G+G+  + +A ++  F  GTRL+R+
Sbjct:   185 HKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRH 244

Query:   242 QKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 301
             + P GSP T++ +V+ AS+RK +  + +D +  YE    E     +  +  T    F ++
Sbjct:   245 KLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNR 304

Query:   302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
             A+++  S       + WRLCT+T+VEE K ++++LP+     + S + +Q+ +LF+ QG 
Sbjct:   305 ASLKTGS------THKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGT 358

Query:   362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
              +D  + N+ F IPPASL  F T S++  + IYDR  V   RK TG+  G+T LQRMGIG
Sbjct:   359 TLDRRLTNN-FSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIG 417

Query:   422 LFISILSMIAAAVLELIRLRMVREHN--YYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
             + + IL MI A++ E  RL++  EH   +     +P+SI   +PQY L+G A+ F  I +
Sbjct:   418 MILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAK 477

Query:   480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
             LEFFY+QAP++M+SL ++ + T++A+G ++SS+L++ V+ I+ K G  GWI +NLN   L
Sbjct:   478 LEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNNLNESRL 536

Query:   540 --HYFFW 544
               +Y F+
Sbjct:   537 DNYYMFF 543

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 234/544 (43%), Positives = 344/544 (63%)

Query:     3 EEEDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD 62
             E  D YTKDGT+D +GNP  ++  G WKAC F++  E  ER+AYYG+S+NL  Y   +L 
Sbjct:     5 EVGDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLH 64

Query:    63 QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG 122
             Q +  +S NV +W GT ++TP++GA++ DA LGRY T  I   IY  GM  LT++ ++ G
Sbjct:    65 QGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPG 124

Query:   123 LKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK 181
             +KP        E C+     Q A FF ALY +A+GTGG KP +S+ GADQFD  D  EK 
Sbjct:   125 IKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKT 184

Query:   182 HKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN 241
              K SFFNW+ FSI  G L A++VLV++QDN GW  G+G+P + +AI++  F  GT  +R+
Sbjct:   185 QKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRH 244

Query:   242 QKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 301
             + P GSP T++ +V+ AS RK    +  D +  +E    E    G+  +  T    F D+
Sbjct:   245 KLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDR 304

Query:   302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE 361
             A+++  +++       W LCT T+VEE K ++R+LP+     + S + +Q+++LFV QG 
Sbjct:   305 ASLKTGTNH------KWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGT 358

Query:   362 RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIG 421
              +D  V   SF IPPASLS F TLS++  + +YDR  V +TRKFTG+  G+T LQRMGIG
Sbjct:   359 TLDRKV-TGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIG 417

Query:   422 LFISILSMIAAAVLELIRLRMVREHNYYDLP--EMPMSIMWQVPQYFLIGCAEVFTFIGQ 479
             L   IL MI A+V E  RL++  +H        ++P++I   +PQ+ L+G A+ F  + +
Sbjct:   418 LIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAK 477

Query:   480 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHL 539
             LEFFY+QAP++M+SL ++ S T++A+GN++SS L++ V+ I+ K G  GWI +NLN   L
Sbjct:   478 LEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNESRL 536

Query:   540 HYFF 543
              Y++
Sbjct:   537 DYYY 540

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M390	PTR1_ARATH	No assigned EC number	0.6842	0.9838	0.9649	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I001673 hypothetical protein (570 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	559
pfam00854	372	pfam00854, PTR2, POT family	1e-108
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	6e-51
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-44
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	6e-23
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	9e-12
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	3e-10
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-09
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	8e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	7e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  329 bits (845), Expect = e-108
 Identities = 146/410 (35%), Positives = 213/410 (51%), Gaps = 41/410 (10%)

Query: 97  YWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALG 156
           + TI + SIIY IG   LT+ A    L PV               Q A F++ LYLIALG
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV---------------QVALFYIGLYLIALG 45

Query: 157 TGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGW 216
           TGGIKP VS++GADQFD   E +   +  FF+WFYFSIN G+LIA+ +  ++Q N G+  
Sbjct: 46  TGGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPL 102

Query: 217 GFGIPAVAMAIAVVSFFSGTRLFRNQ-KPGGSPLTR-ICQVVAASIRKHKVELPADKSLL 274
           GFG+PAV M +A++ F  G+R ++ +  PGGSP T  I  ++ A+ +  K++LP D   L
Sbjct: 103 GFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWL 162

Query: 275 YETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVR 334
           Y   +  +  + S+   HT   +             I              V  L+AI+ 
Sbjct: 163 YWALEKYNKRSISQTKVHT-RVAVIF----------IPLPKFWALFDQQGSVWLLQAILL 211

Query: 335 LLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIY 394
           +LPIWA  I+   +++Q+++L V Q   MD  +    F+IPPAS   F+ L+V+  +PI 
Sbjct: 212 MLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIY-PLFEIPPASFQSFNPLAVLILLPIL 270

Query: 395 DRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM 454
           D  + P+ R     K GLT  QR G+G+FI I++   AA++E  R R             
Sbjct: 271 DFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWT 326

Query: 455 -PMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV 503
            P+ I+W +P+ F+ G        G LEF  +  P +M SL + LS    
Sbjct: 327 VPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  182 bits (463), Expect = 6e-51
 Identities = 110/487 (22%), Positives = 184/487 (37%), Gaps = 65/487 (13%)

Query: 30  KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQ----SSSTASKNVLDWSGTCYITPLI 85
           +    I   E  ER +YYGM   L+ Y  +QL        + A+     +    Y+TP+I
Sbjct: 21  RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80

Query: 86  GAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSAT 145
           G +LAD  LG   TI + +I+  IG   L +++                           
Sbjct: 81  GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG---------------------PGG 119

Query: 146 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL 205
            ++ L LI +GTG  KP +SS   + +      +   +   F  FY  INIG+LIA  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 206 VWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKV 265
             +  N GW  GFG+ AV M I +V F  G R    +  GG P           +  + +
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR--HVKGIGGVP-------DPNPLSFNFL 226

Query: 266 ELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVN-PWRLCTVT 324
                  ++   A   + +         ++        + I    I  +           
Sbjct: 227 LPVLGGLVVMILAALLTLL-------LNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-- 277

Query: 325 QVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDT 384
             +E + ++  +P++   +IF A+Y QM S   L  +R         F++PPA     + 
Sbjct: 278 --DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR-QIFGFEVPPAWFQSLNP 334

Query: 385 LSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVR 444
             +I + PI       + R         +   +  +GL ++ L  +   +  +       
Sbjct: 335 FFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLILAGLGFLILLLAGI------- 383

Query: 445 EHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 504
              ++  P   +S+ W V  Y L    E+F     L    + AP A++S   A+   TVA
Sbjct: 384 ---WFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440

Query: 505 LGNYLSS 511
            G  L  
Sbjct: 441 AGQTLGG 447

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  167 bits (424), Expect = 1e-44
 Identities = 123/444 (27%), Positives = 205/444 (46%), Gaps = 83/444 (18%)

Query: 46  YYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI 105
           YYGM T LV Y  + L  +  TA+     ++  CY+TPLIGA +AD++LG++ TI   S+
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVS 165
           +YV+G    ++ A  S   P+                 A   V L LIALGTGGIKPCVS
Sbjct: 63  VYVVGHALASLGAVPSLGHPL---------------HDALSLVGLALIALGTGGIKPCVS 107

Query: 166 SYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG-------- 217
           ++G DQF+   E +   +  FF++FYF+IN G+L  S+++  I   +   +G        
Sbjct: 108 AFGGDQFE---ERQLSLRFRFFSFFYFAINAGSLF-STIITPILRGDVGCFGCQDCFPLA 163

Query: 218 FGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYET 277
           FG+P + M +A++ F  G+++++ + P G+ ++++ + +  +++K               
Sbjct: 164 FGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKK--------------- 208

Query: 278 ADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLP 337
                      + +      + D AA +     I+                 K ++R+L 
Sbjct: 209 -------RFRTRSEDWPRLHWLDWAAPKYLIRMIR---------------STKRLLRVLF 246

Query: 338 IWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRF 397
           ++    +F A++ Q  S + LQ  RMD  VG   F I P  +   + L V+  VPI+D  
Sbjct: 247 LFIPLPMFWALFDQQGSRWTLQATRMDGDVG--LFPIQPDQMQAVNPLLVLILVPIFDYV 304

Query: 398 IVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 457
           + P   K        T L++M +G+ ++ L+   AA+L+              LPE P +
Sbjct: 305 VYPALAKC---GTRFTSLRKMAVGMLLAALAFAVAALLQNKINPT--------LPEEPSA 353

Query: 458 --IMWQVPQYFLIGCAE-VFTFIG 478
             I  QV       C   V + I 
Sbjct: 354 SIIFLQV---LNTDCTITVVSGIS 374

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score =  101 bits (254), Expect = 6e-23
 Identities = 94/482 (19%), Positives = 162/482 (33%), Gaps = 67/482 (13%)

Query: 39  ECCERLAYYGMSTNLVRYFKHQ----LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYL 94
           E  ER +YYGM   L  Y   Q      Q  +        +S   Y+   +G +  D   
Sbjct: 19  ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGA--YSALVYLLTSVGWWFGDRVW 76

Query: 95  GRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIA 154
           G   T+ +  I+ ++G  F+   +                            F  L  IA
Sbjct: 77  GTKKTMVLGGIVLMLGH-FMLAMSIYPD----------------------LIFYGLGTIA 113

Query: 155 LGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGW 214
           +G+G  K   SS     ++  D   +      F  FY SINIG+ I+  +   I +N G+
Sbjct: 114 VGSGLFKANPSSMVGKLYERGDMPRR---DGGFTLFYMSINIGSFISPLLAGVIAENYGY 170

Query: 215 GWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLL 274
             GF + AV M I +++FF+G  + R+      PL+   +       K  + L A  +L+
Sbjct: 171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG----KLLLALLAALALV 226

Query: 275 YETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVR 334
           +  A    ++  +  L  T   +                         +  V   K    
Sbjct: 227 FFCAWLMHHVVIANILLMTVTLAVIIFFFRLA---FKP---------RLDAVARNKMYA- 273

Query: 335 LLPIWATGIIFSAVYSQM-SSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPI 393
            + ++   ++F  +Y+QM +SL       M   +      +P       +   V+   P+
Sbjct: 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQSLNPFWVVVGSPV 331

Query: 394 YDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE 453
                  + RK    K+  T L+     LF     +  AA +                  
Sbjct: 332 LAMIWTRLGRK---GKDPTTPLKFTLGMLFCGASFLTFAASIWFAD------------AG 376

Query: 454 MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLL 513
              S  + V  Y      E+      L ++ + AP  +      +     A+G+ L   L
Sbjct: 377 GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436

Query: 514 VT 515
            T
Sbjct: 437 AT 438

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 67.3 bits (164), Expect = 9e-12
 Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 30  KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFL 89
           +A  +++  +  E  ++YGM   L+ Y  +QL    + A +    +    Y+TP++G FL
Sbjct: 9   RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68

Query: 90  ADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVA 149
           AD  LG    + + +++  IG   L      S + P                     +++
Sbjct: 69  ADKVLGNRMAVMLGALLMAIGHVVL----GASEIHPS------------------FLYLS 106

Query: 150 LYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ 209
           L +I  G G  K  VS    + ++  D      +   F+  Y + N+G++IA     + Q
Sbjct: 107 LAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162

Query: 210 DNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK 243
           +   W  GFG+ AV M   +V F  G R F + +
Sbjct: 163 EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196

Length = 493

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 55/222 (24%), Positives = 83/222 (37%), Gaps = 28/222 (12%)

Query: 30  KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFL 89
           KA   I   E  ER  YYG+   +  Y   QL  S + +      +S   Y    IG +L
Sbjct: 21  KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80

Query: 90  ADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVA 149
            D  LG    I + +I+  IG   +  +   +G+                       ++ 
Sbjct: 81  GDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGI----------------------VYMG 118

Query: 150 LYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ 209
           +  IA+G G  K   SS  +  ++  D          F  +Y SINIG+  +     W+ 
Sbjct: 119 MATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLA 174

Query: 210 DNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ--KPGGSPL 249
              GW   F +  V M I VV+F    R  +    KP   P+
Sbjct: 175 AKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPI 216

Length = 500

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 450 DLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYL 509
           D+P   +SI+WQ+PQY L    EV   +  LEF Y QAP  M+S+  AL L TVA+GN  
Sbjct: 544 DVPVNTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN-- 601

Query: 510 SSLLVTIV 517
             ++V I+
Sbjct: 602 --IIVLII 607

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 30/221 (13%)

Query: 33  PF--ILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLA 90
           PF  I   E  ER  YYG+   L  +F  QL  S   A      ++   Y    IG ++ 
Sbjct: 15  PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVG 74

Query: 91  DAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVAL 150
           D  LG   TI + +I+  IG  F+T    +S LKP                     F+AL
Sbjct: 75  DHLLGTKRTIVLGAIVLAIGY-FMT---GMSLLKP------------------DLIFIAL 112

Query: 151 YLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD 210
             IA+G G  K   +S  +  +   D          F  FY SINIG+LI+ S+   I D
Sbjct: 113 GTIAVGNGLFKANPASLLSKCYPPKD----PRLDGAFTLFYMSINIGSLISLSLAPVIAD 168

Query: 211 NEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN--QKPGGSPL 249
             G+   + +    + IA++ +F+   + ++   +P   P+
Sbjct: 169 KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM 209

Length = 489

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 41/205 (20%)

Query: 40  CCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCY-----ITPLIGAFLADAYL 94
               L    +S  L       L  S+S A         + +     +  L+  +L+D + 
Sbjct: 9   FLSGLDRGLLSPALP-LLAEDLGLSASQAG-----LIVSAFSLGYALGSLLAGYLSDRF- 61

Query: 95  GRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIA 154
           GR   + +  +++ +G   L   +S+                           V  +L+ 
Sbjct: 62  GRRRVLLLGLLLFALGSLLLAFASSL-----------------------WLLLVGRFLLG 98

Query: 155 LGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGW 214
           LG G + P  ++  A+ F        K +      F     +GAL+   +   + ++ GW
Sbjct: 99  LGGGALYPAAAALIAEWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGW 152

Query: 215 GWGFGIPAVAMAIAVVSFFSGTRLF 239
            W F I A+   +  +      RL 
Sbjct: 153 RWLFLILAILGLLLALLLLFLLRLL 177

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 44  LAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIF 103
             YYG+ T L  Y +  L  S++ A   +  +     +  L+G  L+D    R   + I 
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248

Query: 104 SIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPC 163
            ++  +G+  L +  S+                       A   VAL L+  G G   P 
Sbjct: 249 LLLAALGLLLLALAPSL-----------------------ALLLVALLLLGFGLGFAFPA 285

Query: 164 VSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV 223
           + +  ++          + + +    F    ++G  +   +   + D  G+G  F I A 
Sbjct: 286 LLTLASELA------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAA 339

Query: 224 AMAIAVVSFF 233
              +A +   
Sbjct: 340 LALLAALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 40/199 (20%)

Query: 40  CCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCY-----ITPLIGAFLADAYL 94
               L    +   L  Y    L  S +           T +     +   +   L+D + 
Sbjct: 6   FLAGLGRSLLGPALPLYLAEDLGISPTEIG-----LLLTAFSLGYALAQPLAGRLSDRF- 59

Query: 95  GRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIA 154
           GR   + I  +++ +G+  L   +S+                           V   L  
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSL-----------------------WLLLVLRVLQG 96

Query: 155 LGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGW 214
           LG G + P  ++  AD F        + +            +GA +   +   +    GW
Sbjct: 97  LGGGALFPAAAALIADWF------PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGW 150

Query: 215 GWGFGIPAVAMAIAVVSFF 233
              F I A+   +A V   
Sbjct: 151 RAAFLILAILALLAAVLAA 169

Length = 346

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 41/186 (22%)

Query: 57  FKHQLDQSSSTASKNVLDWSGTC---YITPLIGAFLADA---YLGRYWTIAIFSIIYVIG 110
            +     S    + + +          +  LIG+  A       GR  ++ I ++++VIG
Sbjct: 30  KRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIG 89

Query: 111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGAD 170
              L   A                             V   ++ LG GGI   V  Y   
Sbjct: 90  -ALLQGFAKGKSF--------------------YMLIVGRVIVGLGVGGISVLVPMY--- 125

Query: 171 QFDDADEAEKKHKSSFFN-WFYFSINIGALIASSV---LVWIQDNEGWGWGFG---IPAV 223
                 E   K         +   I  G L+A+ +   L    +++GW    G   +PA+
Sbjct: 126 ----ISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 224 AMAIAV 229
            + I +
Sbjct: 182 LLLIGL 187

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	559
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK05122	399	major facilitator superfamily transporter; Provisi	99.92
PRK12382	392	putative transporter; Provisional	99.92
PRK10054	395	putative transporter; Provisional	99.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.91
PRK10489	417	enterobactin exporter EntS; Provisional	99.9
PRK10504	471	putative transporter; Provisional	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.89
TIGR00891	405	2A0112 putative sialic acid transporter.	99.89
PRK09874	408	drug efflux system protein MdtG; Provisional	99.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.89
TIGR00895	398	2A0115 benzoate transport.	99.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.88
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.88
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.88
PRK11663	434	regulatory protein UhpC; Provisional	99.88
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.88
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.88
PRK10091	382	MFS transport protein AraJ; Provisional	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.87
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.87
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.87
PRK09705	393	cynX putative cyanate transporter; Provisional	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
PRK12307	426	putative sialic acid transporter; Provisional	99.86
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.86
PRK03699	394	putative transporter; Provisional	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.86
PRK15011	393	sugar efflux transporter B; Provisional	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.85
PRK03893	496	putative sialic acid transporter; Provisional	99.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.85
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.84
PRK09952	438	shikimate transporter; Provisional	99.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.84
PRK11043	401	putative transporter; Provisional	99.84
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.84
KOG2532	466	consensus Permease of the major facilitator superf	99.84
PRK10642	490	proline/glycine betaine transporter; Provisional	99.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.83
PRK09528	420	lacY galactoside permease; Reviewed	99.83
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
TIGR00898	505	2A0119 cation transport protein.	99.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.82
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.82
PLN00028	476	nitrate transmembrane transporter; Provisional	99.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.81
PRK15075	434	citrate-proton symporter; Provisional	99.81
KOG0569	485	consensus Permease of the major facilitator superf	99.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
PRK10133	438	L-fucose transporter; Provisional	99.81
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.8
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.8
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.8
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.79
KOG0254	513	consensus Predicted transporter (major facilitator	99.79
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.78
TIGR00901	356	2A0125 AmpG-related permease.	99.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.78
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
PRK11010	491	ampG muropeptide transporter; Validated	99.75
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.74
PRK11902	402	ampG muropeptide transporter; Reviewed	99.73
KOG2615	451	consensus Permease of the major facilitator superf	99.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.7
PRK09669	444	putative symporter YagG; Provisional	99.7
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.69
PRK10429	473	melibiose:sodium symporter; Provisional	99.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.69
PF13347	428	MFS_2: MFS/sugar transport protein	99.69
TIGR00805	633	oat sodium-independent organic anion transporter.	99.68
PRK09848	448	glucuronide transporter; Provisional	99.66
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.64
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.62
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.62
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.6
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.6
PRK11462	460	putative transporter; Provisional	99.59
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.56
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.55
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.54
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.54
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.5
PRK15011	393	sugar efflux transporter B; Provisional	99.49
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.48
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.47
COG2211	467	MelB Na+/melibiose symporter and related transport	99.46
PTZ00207	591	hypothetical protein; Provisional	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.43
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PRK09952	438	shikimate transporter; Provisional	99.41
KOG2533	495	consensus Permease of the major facilitator superf	99.41
PRK03699	394	putative transporter; Provisional	99.39
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.37
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.36
PRK05122	399	major facilitator superfamily transporter; Provisi	99.36
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.34
PRK09528	420	lacY galactoside permease; Reviewed	99.34
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.33
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
PRK11663	434	regulatory protein UhpC; Provisional	99.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.3
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.29
PRK10489	417	enterobactin exporter EntS; Provisional	99.28
PRK03545	390	putative arabinose transporter; Provisional	99.28
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.27
PRK03633	381	putative MFS family transporter protein; Provision	99.27
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.27
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.26
PRK12382	392	putative transporter; Provisional	99.26
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.25
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.24
TIGR00891	405	2A0112 putative sialic acid transporter.	99.22
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.21
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.19
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.19
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.18
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
PLN00028	476	nitrate transmembrane transporter; Provisional	99.17
PRK10504	471	putative transporter; Provisional	99.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.15
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.13
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.13
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.13
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.09
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.09
KOG2563	480	consensus Permease of the major facilitator superf	99.08
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.08
PRK10091	382	MFS transport protein AraJ; Provisional	99.07
PRK12307	426	putative sialic acid transporter; Provisional	99.06
TIGR00900	365	2A0121 H+ Antiporter protein.	99.05
PRK10133	438	L-fucose transporter; Provisional	99.04
PRK11902	402	ampG muropeptide transporter; Reviewed	99.04
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.04
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.04
PF13347	428	MFS_2: MFS/sugar transport protein	99.03
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.02
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.01
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.01
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.01
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.99
TIGR00895	398	2A0115 benzoate transport.	98.99
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.97
PRK10054	395	putative transporter; Provisional	98.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.95
KOG2532	466	consensus Permease of the major facilitator superf	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.88
KOG3626	735	consensus Organic anion transporter [Secondary met	98.88
PRK09848	448	glucuronide transporter; Provisional	98.87
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.86
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.86
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.8
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.78
PRK11043	401	putative transporter; Provisional	98.77
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.74
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
TIGR00898	505	2A0119 cation transport protein.	98.73
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.71
PRK09669	444	putative symporter YagG; Provisional	98.69
TIGR00901	356	2A0125 AmpG-related permease.	98.69
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.68
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.67
KOG0569	485	consensus Permease of the major facilitator superf	98.64
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.62
COG2211	467	MelB Na+/melibiose symporter and related transport	98.56
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.51
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.43
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.42
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.34
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.32
PRK11462	460	putative transporter; Provisional	98.29
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.29
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.26
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.22
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.2
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.19
KOG3762	618	consensus Predicted transporter [General function	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.14
COG0477	338	ProP Permeases of the major facilitator superfamil	98.07
PF12832	77	MFS_1_like: MFS_1 like family	98.06
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.01
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.01
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.98
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.95
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.92
KOG3762	618	consensus Predicted transporter [General function	97.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.8
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.74
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.61
KOG0254	513	consensus Predicted transporter (major facilitator	97.61
KOG0637	498	consensus Sucrose transporter and related proteins	97.53
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.27
TIGR00805	633	oat sodium-independent organic anion transporter.	97.24
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.14
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.09
KOG2563	480	consensus Permease of the major facilitator superf	96.82
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.72
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.65
PTZ00207	591	hypothetical protein; Provisional	96.55
KOG2615	451	consensus Permease of the major facilitator superf	96.53
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.42
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.34
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.24
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.88
PRK03612	521	spermidine synthase; Provisional	95.88
KOG3626	735	consensus Organic anion transporter [Secondary met	95.81
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.59
COG3202	509	ATP/ADP translocase [Energy production and convers	95.4
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.84
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.78
KOG3880	409	consensus Predicted small molecule transporter inv	94.46
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.11
KOG2325	488	consensus Predicted transporter/transmembrane prot	93.96
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.73
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.05
KOG0637	498	consensus Sucrose transporter and related proteins	89.76
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.37
KOG3097	390	consensus Predicted membrane protein [Function unk	89.27
KOG3098	461	consensus Uncharacterized conserved protein [Funct	87.13
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	86.48
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	86.08
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.64
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	83.59
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	80.54

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=7.7e-47  Score=410.60  Aligned_cols=529  Identities=52%  Similarity=0.891  Sum_probs=457.9

Q ss_pred             cCCCCCCCcc---cCCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhH
Q 008623           15 DYKGNPADKT---KTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLAD   91 (559)
Q Consensus        15 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD   91 (559)
                      ++++.+..+.   +++.|+++..++..+.++++++|++...+..|+.+.+|.+...+.-.+..+.......++++++++|
T Consensus        19 d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD   98 (571)
T KOG1237|consen   19 DYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLAD   98 (571)
T ss_pred             eccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4444444443   6678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhhhhccCCCCC-CCCCCCCCcccc-cCcchhHHHHHHHHHHHHhccCCCcccccccc
Q 008623           92 AYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP-VCHGPRGEETCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGA  169 (559)
Q Consensus        92 r~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  169 (559)
                      .|+||.+++.++.++..++.+++.+...+|...+ .|-...+.+.|+ ........++.++.++++|.|+..|+..++.+
T Consensus        99 ~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGa  178 (571)
T KOG1237|consen   99 SFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGA  178 (571)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcc
Confidence            9999999999999999999999988888887665 342222333455 45556778889999999999999999999999


Q ss_pred             cCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChh
Q 008623          170 DQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPL  249 (559)
Q Consensus       170 ~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  249 (559)
                      |++++..+.++.++.+.++|+++..++|..++..+..++.+..||.+.|.++.+.+++++++++...+.+++++|.+++.
T Consensus       179 dQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~  258 (571)
T KOG1237|consen  179 DQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPK  258 (571)
T ss_pred             cccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCch
Confidence            99997777777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhcccccc-ccCCCccccchhhHHH
Q 008623          250 TRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIK-ESVNPWRLCTVTQVEE  328 (559)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~  328 (559)
                      ..+.+++..+.+++....+.++..+      ++......+..+.+.++++|.+++..+.+.+. ...++|+.|..++||+
T Consensus       259 t~i~~Vlvaa~~k~~~~~~~~~~~~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee  332 (571)
T KOG1237|consen  259 TRIGQVLVAAAFKRKAVVSLDPEEL------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEE  332 (571)
T ss_pred             hHHHHHHHHHHHHHhccCCCcchhc------cccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhh
Confidence            9999999999999887776654333      11111112223345667778877655543211 1456899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCcc-ceeCccccccccceeeehhhhhhhhhhhhhhhhccC
Q 008623          329 LKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSS-FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTG  407 (559)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~  407 (559)
                      .|.++++++++.....++.++.|+.+.++.|+..|+++.+  . ++++++.++.+..+..++..|++++..+|+.+|..+
T Consensus       333 ~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~--~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~  410 (571)
T KOG1237|consen  333 VKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLG--SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTG  410 (571)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCC--CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcC
Confidence            9999999999999999999999999999999999999988  5 999999999999999999999999999999999998


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcC
Q 008623          408 HKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA  487 (559)
Q Consensus       408 ~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~  487 (559)
                      ++.+++..+++++|+++..+++...+..+..|.+++.+   ...+.++++.+|++++|++.|++|.+..++..++.++++
T Consensus       411 ~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qa  487 (571)
T KOG1237|consen  411 NPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQA  487 (571)
T ss_pred             CCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhC
Confidence            77779999999999999999999999999999888775   122345799999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccCCCCCCCC-CCCCCchhhHHhhhhh---------------heee
Q 008623          488 PDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIP-DNLNRGHLHYFFWLLT---------------WYTY  551 (559)
Q Consensus       488 P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~---------------~~~~  551 (559)
                      |++||+.+++++..+.++|+.++++++..+...+..  ..+|++ +++|++|+.+++|+++               ||+|
T Consensus       488 P~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~  565 (571)
T KOG1237|consen  488 PESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDY  565 (571)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeee
Confidence            999999999999999999999999999998765533  458999 9999999999999998               7888


Q ss_pred             eCCCC
Q 008623          552 KRPVG  556 (559)
Q Consensus       552 ~~~~~  556 (559)
                      ++.+.
T Consensus       566 ~~~~~  570 (571)
T KOG1237|consen  566 KDDKD  570 (571)
T ss_pred             ccccC
Confidence            77554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-39  Score=336.65  Aligned_cols=423  Identities=27%  Similarity=0.412  Sum_probs=333.4

Q ss_pred             cCCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcC----CChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHH
Q 008623           25 KTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD----QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTI  100 (559)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~  100 (559)
                      ..+++|.++.++.++++|+++||++...+..|+..+++    ++++++..+.+.|....++.+.++||++||++|+||++
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            34688999999999999999999999999999999988    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhh
Q 008623          101 AIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  180 (559)
                      +.+.+++++|.+.++...                     ......++++++++++|.|++.|++.++++|++|++++   
T Consensus        96 ~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp---  151 (498)
T COG3104          96 VLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP---  151 (498)
T ss_pred             HHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc---
Confidence            999999999999997651                     02356789999999999999999999999999999884   


Q ss_pred             hccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccC--CCCChhH------HH
Q 008623          181 KHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK--PGGSPLT------RI  252 (559)
Q Consensus       181 ~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~------~~  252 (559)
                       ||..+++++|++.|+|+.++|++.+++.+.+||+..|.++++.+.++++.+++.+|+.....  ++..+.+      ..
T Consensus       152 -rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~  230 (498)
T COG3104         152 -RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL  230 (498)
T ss_pred             -ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhH
Confidence             58889999999999999999999999999999999999999999999999998887765543  1111111      11


Q ss_pred             HHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhh-hhhhhccccccccCCCccccchhhHHHHHH
Q 008623          253 CQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK-AAVEIQSDNIKESVNPWRLCTVTQVEELKA  331 (559)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  331 (559)
                      .+++......-          ++..-..             +.++.... ..+........ +...+   ++.. +++||
T Consensus       231 ~~~~~~~~~~~----------~~~~l~~-------------~~~~~~~~~~~i~~~~~~~~-~~~~~---~~~~-~er~r  282 (498)
T COG3104         231 GGLVVMILAAL----------LTLLLNQ-------------NTFSGVLLVISILIAIIYFA-EAFRS---PKVF-DERRR  282 (498)
T ss_pred             HHHHHHHHHHH----------HHHHHHH-------------HHHHHHHHHHHHHHHHHHHH-HHhcc---CccH-HHHHH
Confidence            11111111110          0000000             00000000 00000000000 00011   1223 67888


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhhcc-ccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCC
Q 008623          332 IVRLLPIWATGIIFSAVYSQMSSLFVLQG-ERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN  410 (559)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~  410 (559)
                      .+..+++++...+||++++|+++.+..+. ++.+++..  |+++++++++++|++.++++.|+.+++++|+.++.  |+ 
T Consensus       283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~--g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~~-  357 (498)
T COG3104         283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF--GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--KQ-  357 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc--ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--CC-
Confidence            99999999999999999999999876555 45566633  58899999999999999999999999998877663  32 


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChh
Q 008623          411 GLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA  490 (559)
Q Consensus       411 ~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~  490 (559)
                       ++.+.|+++|++++..+++.+.......          .++....|.+|++..|++.++||.+++|...+++++.+|+.
T Consensus       358 -ps~~~KFalGl~l~g~~fl~l~~~~~~~----------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~  426 (498)
T COG3104         358 -PSTPIKFALGLILAGLGFLILLLAGIWF----------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA  426 (498)
T ss_pred             -CCcchHHHHHHHHHHHHHHHHHHHHHhh----------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH
Confidence             8899999999999999999888763321          11134588999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008623          491 MRSLCSALSLTTVALGNYLSSLLVTI  516 (559)
Q Consensus       491 ~rg~~~g~~~~~~~lg~~lg~~l~~~  516 (559)
                      +.+..+|+|.+++..|+.++..+.+.
T Consensus       427 ~~s~~ma~wfLt~a~~~~l~g~va~~  452 (498)
T COG3104         427 LKSFIMAMWFLTVAAGQTLGGQVAGL  452 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhhceeccc
Confidence            99999999999999998887777763

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=1.8e-34  Score=309.54  Aligned_cols=424  Identities=18%  Similarity=0.251  Sum_probs=308.5

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      +|+|.++.+++.+++++.++|++..++|.|+++++|++..+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      .+++.+.+....                      .+...++++..+..+|.|...++.+++++|++|+++    ++|.++
T Consensus        86 ~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~----~~R~sg  139 (493)
T PRK15462         86 MAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGG  139 (493)
T ss_pred             HHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC----ccccce
Confidence            888877664320                      112234555666778888888999999999999763    248999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccccccc---CCCCChhHHHHH----HHHHH
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ---KPGGSPLTRICQ----VVAAS  259 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~  259 (559)
                      ++++|+..|+|+.++|.+.+++.+..||++.|.++++.++++++.++..++...+.   +++..+.++...    .+...
T Consensus       140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (493)
T PRK15462        140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL  219 (493)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877777777666555443221   111111011000    00000


Q ss_pred             HhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHH
Q 008623          260 IRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIW  339 (559)
Q Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  339 (559)
                      ..-.       +......-. +            +.....-..........   .....+ .+ ...++++|+...+.++
T Consensus       220 ~~~~-------~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~---~~~~~~-~~-~~~~er~r~~~~~~l~  274 (493)
T PRK15462        220 LVAT-------PALITVLFW-K------------EWSVYALIVATIIGLGV---LAKIYR-KA-ENQKQRKELGLIVTLT  274 (493)
T ss_pred             HHHH-------HHHHHHHHH-H------------HHHHHHHHHHHHHHHHH---HHHHHH-hc-CCHHHHhhHHHHHHHH
Confidence            0000       000000000 0            00000000000000000   000000 01 1125677888888999


Q ss_pred             HHHHHHHHHhcccchhhhhcc-ccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHH
Q 008623          340 ATGIIFSAVYSQMSSLFVLQG-ERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM  418 (559)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~  418 (559)
                      +...+||..++|.++.+.... .++|+++.  ++++++++++++|++.++++.|+..+++.+..+|    +++++...|+
T Consensus       275 ~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~--g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kf  348 (493)
T PRK15462        275 FFSMLFWAFAQQGGSSISLYIDRFVNRDMF--GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKF  348 (493)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccchhc--ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHH
Confidence            999999999999998765433 57788877  8999999999999999999999999866444322    2237889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHH
Q 008623          419 GIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL  498 (559)
Q Consensus       419 ~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~  498 (559)
                      .+|+++++++++.+.+....    .+++       ..++.+|++..+++.++||...+|...+++.+.+|++.+|+.+|+
T Consensus       349 a~g~~~~g~~f~~l~~~~~~----~~~~-------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~  417 (493)
T PRK15462        349 ALGLGLMSAGFCILTLSARW----SAMY-------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGI  417 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhh----cCCC-------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence            99999999999888765432    1111       137889999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHhhHHHHHhh
Q 008623          499 SLTT-VALGNYLSSLLVTIVT  518 (559)
Q Consensus       499 ~~~~-~~lg~~lg~~l~~~v~  518 (559)
                      +.+. ..+|+.++..+.+...
T Consensus       418 w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        418 YMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            9874 4688877777766553

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.3e-34  Score=311.01  Aligned_cols=420  Identities=20%  Similarity=0.284  Sum_probs=306.4

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      ++|||.++.+++.+++++.++|++.++++.|+++++|++..+++++.+.+....++..+++|+++||++||||+++.+.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999993399999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +++++.+.+.++.                      .....++++|+++++|.|...|+..++++|++|+++    ++|.+
T Consensus        90 ~~~~g~~~~~~~~----------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~----~~~~~  143 (489)
T PRK10207         90 VLAIGYFMTGMSL----------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD----PRLDG  143 (489)
T ss_pred             HHHHHHHHHHHhc----------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----hhhhc
Confidence            9999999888651                      112335678999999999999999999999998875    13678


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccccccc--CCCCChh--HHHHHH----HH
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ--KPGGSPL--TRICQV----VA  257 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~----~~  257 (559)
                      ++++++++.|+|..+||.+++++.++.||++.|++.++.++++++.+...++..++.  ++++++.  ......    ..
T Consensus       144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~  223 (489)
T PRK10207        144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVV  223 (489)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999998776666665555554443332  2222221  111100    00


Q ss_pred             HHHh-hccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHH
Q 008623          258 ASIR-KHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLL  336 (559)
Q Consensus       258 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  336 (559)
                      .... ....+.. ....                      .-....+.+.....       -++..+.++++ +++.+..+
T Consensus       224 ~~~~~~~~~~~~-~~~~----------------------~~~~~~~~i~~~~f-------~~~~~~~~~~~-r~r~~~~~  272 (489)
T PRK10207        224 MIFVCAWLMHNV-EVAN----------------------LVLIVLSIVVTIIF-------FREAFKLDKTG-RNKMFVAF  272 (489)
T ss_pred             HHHHHHHHHhhh-hHHH----------------------HHHHHHHHHHHHHH-------HHHHhcCCHHH-HHHHHHHH
Confidence            0000 0000000 0000                      00000000000000       00000112223 34455566


Q ss_pred             HHHHHHHHHHHHhcccchhhhhccc-cccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChh
Q 008623          337 PIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQL  415 (559)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~  415 (559)
                      .+++...+++..+.|....+..+.. .+++...  |+.+++++++++|++.++++.|+.+++.    +|+++|+.++++.
T Consensus       273 ~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G~~i~~~~~~~~n~~~iii~~pl~~~l~----~rl~~r~~~~~~~  346 (489)
T PRK10207        273 VLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--GFSINPVSFQALNPFWVVVASPILAGIY----THLGSKGKDLSMP  346 (489)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--ceEECHHHHHhHhHHHHHHHHHHHHHHH----HHHhhCCCCCCcH
Confidence            6777788999999999776655443 4555444  6888999999999999999999988744    4444443347889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHH
Q 008623          416 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLC  495 (559)
Q Consensus       416 ~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~  495 (559)
                      .++.+|+++++++++.++.....   ..+.       ....+.+++++.+++.++||++.+|...+++++.+|++++|.+
T Consensus       347 ~k~~~G~~l~~~~~~~~~~~~~~---~~~~-------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~  416 (489)
T PRK10207        347 MKFTLGMFLCSLGFLTAAAAGMW---FADA-------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFI  416 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---hcCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHH
Confidence            99999999999888766543211   0011       1135778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhh
Q 008623          496 SALSLTTVALGNYLSSLLVTIVT  518 (559)
Q Consensus       496 ~g~~~~~~~lg~~lg~~l~~~v~  518 (559)
                      +|++++.+++|+.++..+.....
T Consensus       417 ~g~~~l~~~ig~~lg~~l~~~~~  439 (489)
T PRK10207        417 LGMWFLTQAAAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999988887664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=9e-34  Score=307.05  Aligned_cols=423  Identities=21%  Similarity=0.283  Sum_probs=310.1

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhh--cCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ--LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIF  103 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~  103 (559)
                      .+++|.++.+++.+++++.++|++.+++|.|++++  +|++..+++.+.+.+.+..+++++++|+++||++||||+++++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            46788899999999999999999999999999887  9999999999999999999999999999999933999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcc
Q 008623          104 SIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (559)
                      .++.+++.+++++.                       .+.+.+++++.+.|+|.|...|+..++++|++|+++.   ++|
T Consensus        86 ~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r  139 (475)
T TIGR00924        86 GIVLMLGHFMLAMS-----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRR  139 (475)
T ss_pred             HHHHHHHHHHHHhc-----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccc
Confidence            99999998887765                       3356677889999999999999999999999987641   248


Q ss_pred             ccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhH----HHHH-----
Q 008623          184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLT----RICQ-----  254 (559)
Q Consensus       184 ~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----  254 (559)
                      ++++++++++.|+|+.+||.+++++.+..||++.|.+.++..+++++.+....+..++.++++++.+    +..+     
T Consensus       140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (475)
T TIGR00924       140 DGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLAL  219 (475)
T ss_pred             cceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHH
Confidence            8899999999999999999999999998999999999887666666655555544433222111110    0000     


Q ss_pred             --HHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHH
Q 008623          255 --VVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAI  332 (559)
Q Consensus       255 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  332 (559)
                        .+....+.... ......                   ...................   ...|    ..++++ +++.
T Consensus       220 ~~~~~~~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~-~~~~  271 (475)
T TIGR00924       220 LAALALVFFCAWL-MHHVVI-------------------ANILLMTVTLAVIIFFFRL---AFKP----RLDAVA-RNKM  271 (475)
T ss_pred             HHHHHHHHHHHHH-HhccHH-------------------HHHHHHHHHHHHHHHHHHH---HHhc----cCCHHH-HhHH
Confidence              00000000000 000000                   0000000000000000000   0001    111223 3334


Q ss_pred             HHHHHHHHHHHHHHHHhcccchhhh-hccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCC
Q 008623          333 VRLLPIWATGIIFSAVYSQMSSLFV-LQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNG  411 (559)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~  411 (559)
                      ...+++++...+++..+.|+.+.+. .+...++.+++  ++++++++++++|++.+++++|+.++++.++.+|    +.+
T Consensus       272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~--~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~  345 (475)
T TIGR00924       272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKD  345 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence            5577788889999999999998654 33344566655  7889999999999999999999998755444433    222


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhh
Q 008623          412 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM  491 (559)
Q Consensus       412 ~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~  491 (559)
                      .+...++.+|+++.++++..+++....    .+       +..+++.+|+++++++.++||.+..|..++++++.+|+++
T Consensus       346 ~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~-------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~  414 (475)
T TIGR00924       346 PTTPLKFTLGMLFCGASFLTFAASIWF----AD-------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL  414 (475)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhh----cC-------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence            567778999999999999888765211    11       1224789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          492 RSLCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       492 rg~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      ||+++|++++...+|+.+++.+.....+
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999888886643

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=2.7e-32  Score=297.29  Aligned_cols=415  Identities=20%  Similarity=0.308  Sum_probs=301.6

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      .+++|.++.+++.+++++.++|++..+++.|+++++|++..+++++.+.+....+...+++|+++||++|||++++.+.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            36778899999999999999999999999999999999999999999888888888888999999993399999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +.+++.+.+.++.                      .+...+.++++++|+|.|...++..++++|++|+++    .+|.+
T Consensus        97 ~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~~~  150 (500)
T PRK09584         97 VLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDG  150 (500)
T ss_pred             HHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhhhh
Confidence            9998888776541                      224456778899999999999999999999998764    13567


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccccccc--CCCCChhH--HH----HHHHH
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ--KPGGSPLT--RI----CQVVA  257 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~--~~----~~~~~  257 (559)
                      ++++++++.++|+.+||.+++++.+..||++.|.+.++..+++++.+++..+..++.  ++++++.+  ..    ..+..
T Consensus       151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (500)
T PRK09584        151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVA  230 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHH
Confidence            889999999999999999999999999999999998876666665554443332221  22211111  11    11111


Q ss_pred             HHHhh-ccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHH
Q 008623          258 ASIRK-HKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLL  336 (559)
Q Consensus       258 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  336 (559)
                      ..... ...+.++...                +     .............. .        ..+..++ .++++++..+
T Consensus       231 ~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~~~~~~~-~--------~~~~~~~-~~~~~~~~~~  279 (500)
T PRK09584        231 LIAIATWLLHNQEIAR----------------M-----ALGVVALGIVVIFG-K--------EAFAMKG-AARRKMIVAF  279 (500)
T ss_pred             HHHHHHHHHhcchHHH----------------H-----HHHHHHHHHHHHHH-H--------HHhhcCH-HHHHHHHHHH
Confidence            11110 0000000000                0     00000000000000 0        0001122 3344555566


Q ss_pred             HHHHHHHHHHHHhcccchhhhhccc-cccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChh
Q 008623          337 PIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQL  415 (559)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~  415 (559)
                      .+++...++|..+.|+++.+..+.. ..+.++.  ++.+++++++++|++.++++.|+.+++    .+|+.+|   .+..
T Consensus       280 ~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~  350 (500)
T PRK09584        280 ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMP  350 (500)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcH
Confidence            6778889999999999998776543 3454554  678899999999999999999999874    4555555   6678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHH
Q 008623          416 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLC  495 (559)
Q Consensus       416 ~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~  495 (559)
                      +++.+|+++++++++.+.+....    .+++       ..++.+++++.+++.++||++.+|...+++.+.+|+++||++
T Consensus       351 ~~~~~G~~l~~l~f~~l~~~~~~----~~~~-------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~  419 (500)
T PRK09584        351 HKFAIGMVLCSGAFLVLPLGAKF----ANDA-------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFI  419 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----cCCC-------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHH
Confidence            89999999999999988765421    1122       246778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHh
Q 008623          496 SALSLTTVALGNYLSSLLVTIV  517 (559)
Q Consensus       496 ~g~~~~~~~lg~~lg~~l~~~v  517 (559)
                      +|++.+...+|+.++..+.+..
T Consensus       420 ~g~~~l~~a~g~~~~g~~~~~~  441 (500)
T PRK09584        420 MGSWFLTTAGAALIAGYVANLM  441 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888887776666543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.95  E-value=3.5e-26  Score=253.47  Aligned_cols=337  Identities=33%  Similarity=0.634  Sum_probs=273.7

Q ss_pred             HHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 008623           45 AYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLK  124 (559)
Q Consensus        45 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (559)
                      +||++...+..|+.+.+|++.+++..+...+....++.+.++|+++|+++||++++.++.++..++..++++.. .|.. 
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~-   79 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS-   79 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc-
Confidence            68999999999999999999999999999999999999999999999999999999999999999998887642 2210 


Q ss_pred             CCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhh
Q 008623          125 PVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSV  204 (559)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i  204 (559)
                                   .........+++++++++|.|++.|+..+..+|++++++   .++|.+++.++|+++|+|+.+++++
T Consensus        80 -------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        80 -------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             -------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         001223456788899999999999999999999998654   2247889999999999999999999


Q ss_pred             hhhhccc-------cCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhc
Q 008623          205 LVWIQDN-------EGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYET  277 (559)
Q Consensus       205 ~~~l~~~-------~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  277 (559)
                      .+++.+.       .+|..+|.+++++++++++++....+++++.++.+++..++.+++..+.+++....+.        
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~--------  215 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE--------  215 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc--------
Confidence            9998744       3699999999999999998888878777777777777777777777666543221110        


Q ss_pred             ccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Q 008623          278 ADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFV  357 (559)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (559)
                                     ....++.|.+..            .   ...++++++|++++++++++...++|..+.|.++.+.
T Consensus       216 ---------------~~~~~~ld~a~~------------~---~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~  265 (654)
T TIGR00926       216 ---------------HWPLHWLDYAKD------------K---HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWT  265 (654)
T ss_pred             ---------------ccchhHHHHhcc------------c---cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence                           000122322211            0   0234578889999999999999999999999999988


Q ss_pred             hccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008623          358 LQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLEL  437 (559)
Q Consensus       358 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~  437 (559)
                      .|...++.+++  ++.+++++++.++++.++++.|+++..++|..+|.+.+   +++.+++++|+++++++++.++..+.
T Consensus       266 ~qa~~m~~~l~--g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~  340 (654)
T TIGR00926       266 LQATRMDGDVG--GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL  340 (654)
T ss_pred             HHHHHhcCccC--CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777776  78899999999999999999999998888888776544   78999999999999999999999888


Q ss_pred             HHHHH
Q 008623          438 IRLRM  442 (559)
Q Consensus       438 ~~~~~  442 (559)
                      .+.++
T Consensus       341 ~~~~~  345 (654)
T TIGR00926       341 KVNPT  345 (654)
T ss_pred             HHhcc
Confidence            76543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.92  E-value=2.7e-23  Score=219.54  Aligned_cols=173  Identities=8%  Similarity=0.034  Sum_probs=144.2

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      |..++.+.+..+......+...+.+| .+.+++|.+..+.+++.+.+.+...++.++.|+++||+ ||||++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            33345555555555455454444455 45678999999999999999999999999999999999 99999999999989


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+.+.++                       ++.+.+++.|+++|++.+...+...+++.|++|+++      |+++++
T Consensus        86 ~~~~~~~~~-----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g  136 (390)
T PRK03545         86 ASHVLSALA-----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALS  136 (390)
T ss_pred             HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHH
Confidence            888888776                       457889999999999999888888999999999886      999999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      ++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..
T Consensus       137 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        137 LLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888999999998887655554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=2.6e-23  Score=215.73  Aligned_cols=360  Identities=13%  Similarity=0.079  Sum_probs=233.9

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      +.++...++...+.......+|.|.. +++.+..+.+++.+.+.+...++.++.|+++||+ ||||+++.+.++..++.+
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         2 RLLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVA   79 (365)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHH
Confidence            34556777777777777788888875 5889999999999999999999999999999999 999999999888777777


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      ...+....+                  +.+.+.+++.|++.|++.+...+...+++.|++|+++      |++.+++.+.
T Consensus        80 ~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  135 (365)
T TIGR00900        80 VLPFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQA  135 (365)
T ss_pred             HHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHH
Confidence            766552111                  1367888999999999999999999999999999886      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhH-HHHHHHHHHHhhccccCCCcc
Q 008623          193 SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLT-RICQVVAASIRKHKVELPADK  271 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  271 (559)
                      +.++|..++|.+++++.+..||++.|++.++..+++.+..+....+..+++ ++++.+ +..+                 
T Consensus       136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------------  197 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSNAVLR-----------------  197 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccchhHHH-----------------
Confidence            999999999999999998899999998877665555444333221111000 000000 0000                 


Q ss_pred             chhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHH-HHHHHHHHhc
Q 008623          272 SLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWA-TGIIFSAVYS  350 (559)
Q Consensus       272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~  350 (559)
                                                  +..             ..+     +...+.|.+...+...+ ..........
T Consensus       198 ----------------------------~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (365)
T TIGR00900       198 ----------------------------DTR-------------EGI-----KFVLKNPLLRTLLLLALLFNLVFAPAIV  231 (365)
T ss_pred             ----------------------------HHH-------------hHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence                                        000             000     00011111211111111 1111111111


Q ss_pred             ccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 008623          351 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMI  430 (559)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l  430 (559)
                      .....+..+      .++.+.  ...+.......+..++..++.++    +.+|.       ++++.+..+..+.+++..
T Consensus       232 ~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----l~~~~-------~~~~~~~~~~~~~~~~~~  292 (365)
T TIGR00900       232 ALFPYVQSK------YLGRGS--THYGWVLAAFGLGALLGALLLGL----LGRYF-------KRMALMTGAIFVIGLAIL  292 (365)
T ss_pred             HHhHHHHHH------HhCCch--HHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------chhHHHHHHHHHHHHHHH
Confidence            111111111      111000  01112222233333344444433    33442       333445555555665555


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHh
Q 008623          431 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLS  510 (559)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg  510 (559)
                      ...+..                   .+.+...+..++.+++.+...+...+++.+..|++.||++.|+.++..++++.++
T Consensus       293 ~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g  353 (365)
T TIGR00900       293 VVGLTP-------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG  353 (365)
T ss_pred             HHHhhc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            544321                   0245566677888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhh
Q 008623          511 SLLVTIVTSI  520 (559)
Q Consensus       511 ~~l~~~v~~~  520 (559)
                      +.+.|.+.+.
T Consensus       354 ~~~~g~l~~~  363 (365)
T TIGR00900       354 LILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.92  E-value=1.8e-22  Score=213.65  Aligned_cols=351  Identities=11%  Similarity=0.012  Sum_probs=231.4

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      .+|.+..++...+...++.....+.+|.|+++++|.|..+.+++.+.+.+...++.++.|+++||+ ||||+++.+.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            344577788888899999888899999999999999999999999999999999999999999999 9999999999887


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+.+.++....+               ....+...+++.|++.|++.+...+...+++.|+.|+++      |+++.
T Consensus        92 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~  150 (399)
T PRK05122         92 ALSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVI  150 (399)
T ss_pred             HHHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccch
Confidence            777666554321110               001245678899999999999999998899999998886      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccC
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVEL  267 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (559)
                      +++..+.++|..+||.+++++.+..||++.+.+.++..++..+   +..+. ++.++++++..                 
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-----------------  209 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARPR-PAVPPVKGERL-----------------  209 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhcC-CCCCCCCccch-----------------
Confidence            9999999999999999999999989999887765554333222   11111 11000000000                 


Q ss_pred             CCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHH-HHHHHHHHHHH
Q 008623          268 PADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRL-LPIWATGIIFS  346 (559)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~  346 (559)
                                                                       ++   .    +..|+.... ....+....+.
T Consensus       210 -------------------------------------------------~~---~----~~~~~~~~~~~~~~~~~~~~~  233 (399)
T PRK05122        210 -------------------------------------------------PF---R----RVLGRVWPYGMGLALASIGFG  233 (399)
T ss_pred             -------------------------------------------------hH---H----HHHHHHHHHHHHHHHHHHHHH
Confidence                                                             00   0    000111100 00111111111


Q ss_pred             HHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008623          347 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI  426 (559)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~  426 (559)
                      ......+.++.      +.+..      ..........+..++..++.++    +.+|.       ++++.+..+..+.+
T Consensus       234 ~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~g~----l~~r~-------~~~~~~~~~~~~~~  290 (399)
T PRK05122        234 TIATFITLYYA------ARGWD------GAALALTLFGVAFVGARLLFGN----LINRL-------GGLRVAIVSLLVEI  290 (399)
T ss_pred             HHHHHHHHHHH------Hcccc------cchHHHHHHHHHHHHHHHHHHH----HHHHh-------ccHHHHHHHHHHHH
Confidence            11111111111      11101      0011111222223333333333    44443       33345666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHH
Q 008623          427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG  506 (559)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  506 (559)
                      ++.......+                    +.+.+.+..++.+++.+...|.......+..|++.||+++|+++....+|
T Consensus       291 ~~~~~~~~~~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (399)
T PRK05122        291 LGLLLLWLAP--------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLS  350 (399)
T ss_pred             HHHHHHHHhc--------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            6665554421                    33445566788888888888888888889999999999999999999999


Q ss_pred             HHHhhHHHHHhhhh
Q 008623          507 NYLSSLLVTIVTSI  520 (559)
Q Consensus       507 ~~lg~~l~~~v~~~  520 (559)
                      ..+++.+.|.+.+.
T Consensus       351 ~~~~~~~~g~l~~~  364 (399)
T PRK05122        351 LGITGPLAGLVASW  364 (399)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988763

>PRK12382 putative transporter; Provisional

Probab=99.92  E-value=1.4e-22  Score=214.02  Aligned_cols=351  Identities=10%  Similarity=0.016  Sum_probs=228.1

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      ..+.++.+.+..++...+.....+.+|.|+++++|.|..+.+++.+.+.+...++.++.|+++||+ ||||+++.+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLAC   91 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHH
Confidence            345677777788888888888889999999999999999999999999999999999999999999 9999999998876


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+........+.               ....+.+.+++.|++.|++.+...+...+++.|.+|+++      |++++
T Consensus        92 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~  150 (392)
T PRK12382         92 GLAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM  150 (392)
T ss_pred             HHHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence            665543322211111               011357788999999999999888888888999999886      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccC
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVEL  267 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (559)
                      ++.+.+.++|..++|.+++++.+..||++.+.+..+..++..   .... +.++.+++++...                 
T Consensus       151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~-----------------  209 (392)
T PRK12382        151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNG-TVRKVPAHAGERP-----------------  209 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHH-hccCCCCCcccCc-----------------
Confidence            999999999999999999999888899987665443322222   1111 1111110000000                 


Q ss_pred             CCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHH-HHHHHHHHHHH
Q 008623          268 PADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRL-LPIWATGIIFS  346 (559)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~  346 (559)
                                                                       ++   +    +..|.+.+. ....+....+.
T Consensus       210 -------------------------------------------------~~---~----~~~~~~~~~~~~~~l~~~~~~  233 (392)
T PRK12382        210 -------------------------------------------------SL---W----SVVGLIWKPGLGLALQGVGFA  233 (392)
T ss_pred             -------------------------------------------------hH---H----HHHHHHHHhHHHHHHHHHHHh
Confidence                                                             00   0    000000000 00111111111


Q ss_pred             HHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008623          347 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI  426 (559)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~  426 (559)
                      ......+.++.      +.+..      ..........+..++..++.++    +.+|++++       +.+..+..+.+
T Consensus       234 ~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~~~~~~~  290 (392)
T PRK12382        234 VIGTFVSLYFA------SKGWA------MAGFTLTAFGGAFVLMRVLFGW----MPDRFGGV-------KVAIVSLLVET  290 (392)
T ss_pred             HHHHHHHHHHH------hcCCc------hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCC-------eehHHHHHHHH
Confidence            11111111111      11111      0111111222223334444443    44554333       35556666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHH
Q 008623          427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG  506 (559)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  506 (559)
                      ++++.....+                    +.+...+..++.+++.+...|.......+..|+++||+++|++++...+|
T Consensus       291 ~~~~~~~~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (392)
T PRK12382        291 VGLLLLWLAP--------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIA  350 (392)
T ss_pred             HHHHHHHHcc--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            6665544321                    33445556678888888888888888899999999999999999999999


Q ss_pred             HHHhhHHHHHhhhh
Q 008623          507 NYLSSLLVTIVTSI  520 (559)
Q Consensus       507 ~~lg~~l~~~v~~~  520 (559)
                      +.+++.+.+.+.+.
T Consensus       351 ~~ig~~~~g~l~~~  364 (392)
T PRK12382        351 YGVSGPLAGMLATS  364 (392)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998874

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=6.3e-23  Score=217.42  Aligned_cols=356  Identities=13%  Similarity=0.103  Sum_probs=236.3

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      .+|+++.++...++...+++...++++.|+++++|++..+.+++.+.+.+...+..++.|+++||+ |||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            456688888999999999999999999999999999999999999999999999999999999998 9999999998888


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+...+.                       ++.+.+++.+.+.+.+.+...+...++..|.+|+++      |++++
T Consensus        84 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  134 (395)
T PRK10054         84 ASGFIAIPLV-----------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIF  134 (395)
T ss_pred             HHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHH
Confidence            8877777665                       346666777777787777777888889999998876      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccC
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVEL  267 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (559)
                      ++.+...++|..++|.+++++.+ .+|+.+|.+.+++.++.++...+..++.+  ++++++....               
T Consensus       135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~~---------------  196 (395)
T PRK10054        135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGSV---------------  196 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--cccccchhhh---------------
Confidence            99999999999999999998875 78999999887766665444333222111  1100000000               


Q ss_pred             CCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHH-HHHHHHHHH
Q 008623          268 PADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLP-IWATGIIFS  346 (559)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~  346 (559)
                                                                        +   +.++..+.|++..... ..+......
T Consensus       197 --------------------------------------------------~---~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (395)
T PRK10054        197 --------------------------------------------------W---SPSVLLQDKALLWFTCSGFLASFVSG  223 (395)
T ss_pred             --------------------------------------------------h---hhhhhccCceehHHHHHHHHHHHHHH
Confidence                                                              0   0000000111111111 111111111


Q ss_pred             HHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008623          347 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI  426 (559)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~  426 (559)
                      ........+....   .+....    ....+.+...+.+..+...+..++    ..+|       .++++.+..++.+..
T Consensus       224 ~~~~~~~~~~~~~---~~~~~~----~~~~g~~~~~~~~~~~~~~~~~g~----~~~~-------~~~~~~l~~~~~~~~  285 (395)
T PRK10054        224 AFASCISQYVMVV---ADSDFA----EKVVAVVLPVNAAMVVSLQYSVGR----RLNA-------ANIRPLMTAGTLCFV  285 (395)
T ss_pred             HhhhhHHHHHHHh---cccchH----HHHHHHHHHhhhhheeeehhHHHH----HHcc-------CCchhHHHHHHHHHH
Confidence            1111111111110   011110    001112233333444444444333    3333       334456667777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHH
Q 008623          427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG  506 (559)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  506 (559)
                      +++..+....                   .+.+.+.+..++.+++++...|..++.+.+.+|++.+|++.|..+ ...+|
T Consensus       286 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G  345 (395)
T PRK10054        286 IGLVGFIFSG-------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLG  345 (395)
T ss_pred             HHHHHHHHcc-------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHH
Confidence            7666554321                   133344556688999999999999999999999999999998765 56689


Q ss_pred             HHHhhHHHHHhhhhhc
Q 008623          507 NYLSSLLVTIVTSIST  522 (559)
Q Consensus       507 ~~lg~~l~~~v~~~~~  522 (559)
                      ..+||.+.|.+.+..+
T Consensus       346 ~~~Gp~~~G~l~~~~g  361 (395)
T PRK10054        346 AAINPLVSGVILTTLP  361 (395)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999988543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.91  E-value=8e-23  Score=216.96  Aligned_cols=349  Identities=13%  Similarity=0.103  Sum_probs=234.6

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      +.++...++...+.+.+.+.++.|+++++|.+..+.|.+.+...+...+..+++|+++||+ |||++++.+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999998 999999999999888888


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      .+...                       ++.+.+++.|++.|++.+...|...+++.|.+|+++      |+++.++.+.
T Consensus        92 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~  142 (400)
T PRK11646         92 TMAIA-----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMM  142 (400)
T ss_pred             HHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHH
Confidence            77655                       357778899999999998888888999999999876      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccc
Q 008623          193 SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKS  272 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (559)
                      ..++|..+||.+++++. ..||++.|++.++..++..+...+..++.+. ++..++..+                     
T Consensus       143 ~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~---------------------  199 (400)
T PRK11646        143 QDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVRE---------------------  199 (400)
T ss_pred             HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhHH---------------------
Confidence            99999999999999998 6799999998776555444333222221110 000000000                     


Q ss_pred             hhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008623          273 LLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQM  352 (559)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (559)
                                                                  .+     +...+.+++......   ...++....+.
T Consensus       200 --------------------------------------------~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~  227 (400)
T PRK11646        200 --------------------------------------------GM-----TRVLRDKRFVTYVLT---LTGYYMLAVQV  227 (400)
T ss_pred             --------------------------------------------HH-----HHHHcCchHHHHHHH---HHHHHHHHHHH
Confidence                                                        00     000001111111111   11111111111


Q ss_pred             chhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008623          353 SSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAA  432 (559)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~  432 (559)
                      ....+.   +.++..+   .....+...++..+..+.......+    ..+   +|   .+..+.+..+.++.+++.+.+
T Consensus       228 ~~~~p~---~~~~~~~---~~~~~g~l~~~~~~~~~~~~~~~~~----~~~---~r---~~~~~~~~~~~~~~~~~~~~l  291 (400)
T PRK11646        228 MLMLPI---MVNDIAG---SPSAVKWMYAIEACLSLTLLYPIAR----WSE---KR---FRLEHRLMAGLLIMSLSMFPI  291 (400)
T ss_pred             HHhhhh---hHHhhcC---CchHHHHHHHHHHHHHHHHHHHHHH----HHH---Hh---cchhHHHHHHHHHHHHHHHHH
Confidence            111111   1111111   0011111222222222222212222    111   22   333445667777777766655


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhH
Q 008623          433 AVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSL  512 (559)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~  512 (559)
                      ...+                    +.+.+.+..++.+++.+...|...+++.+.+|++.||+++|+.++..++|+.+|+.
T Consensus       292 ~~~~--------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~  351 (400)
T PRK11646        292 GMVS--------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYI  351 (400)
T ss_pred             HHhh--------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhccc
Confidence            5432                    23344445567788888888999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhc
Q 008623          513 LVTIVTSIST  522 (559)
Q Consensus       513 l~~~v~~~~~  522 (559)
                      +.|++.+..+
T Consensus       352 l~G~l~~~~~  361 (400)
T PRK11646        352 GGGWLFDLGK  361 (400)
T ss_pred             chHHHHHHHh
Confidence            9999988643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.91  E-value=1.4e-22  Score=221.18  Aligned_cols=401  Identities=12%  Similarity=0.021  Sum_probs=241.7

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      |..+..+++..++..+....+..-+|.. .+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||++++.+.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            4445566666677666666666667655 578999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCC-CcchHhhhccccch
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFD-DADEAEKKHKSSFF  187 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~  187 (559)
                      ++.+.++.+                       ++.+.++++|+++|+|.++..|.....+.+.++ +++      |++++
T Consensus        83 ~~~~~~~~a-----------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~  133 (495)
T PRK14995         83 LASLAAAFS-----------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMAL  133 (495)
T ss_pred             HHHHHHHHc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHH
Confidence            999988876                       468889999999999999988887777877764 454      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHH-HHHH-----HHHHh
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRI-CQVV-----AASIR  261 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~  261 (559)
                      +++....++|..+||.+++++.++.|||+.|++...+.++.+++.++..++.+.++.++.+.... ....     .....
T Consensus       134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~  213 (495)
T PRK14995        134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK  213 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887666655554444433322111111111111 0000     00000


Q ss_pred             hccccCCCccchhhhcccccccccCCcccCCCCccchhhhhh-hhhccccccccCCCccccchhhHHHHHHHHHHHHHHH
Q 008623          262 KHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA-VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWA  340 (559)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  340 (559)
                      . ..+...+......                .-......... ...+. +   ...|..+   .+.-+.|.+.......+
T Consensus       214 ~-~~~~~~~~~~~~~----------------~~~~~~~~l~~f~~~e~-~---~~~p~~~---~~lf~~~~~~~~~~~~~  269 (495)
T PRK14995        214 T-ALKGFLSLWVTSL----------------TLLTGALLLGLFIRTQL-A---ASRPMID---MRLFTHRIILSGVVMAM  269 (495)
T ss_pred             h-ccccCCchHHHHH----------------HHHHHHHHHHHHHHHHh-c---CCCCCcC---HHHhCCcccHHHHHHHH
Confidence            0 0000000000000                00000000000 00000 0   1112110   01111122211111111


Q ss_pred             HHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHH
Q 008623          341 TGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGI  420 (559)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~  420 (559)
                      .   .+..+.....++.   .+++...|.  -....+.......+...+..++.++    +.+|.+       +++.+..
T Consensus       270 ~---~~~~~~~~~~~~~---~~lq~v~g~--s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r~g-------~~~~~~~  330 (495)
T PRK14995        270 T---AMITLVGFELLMA---QELQFVHGL--SPLEAGMFMLPVMVASGFSGPIAGI----LVSRLG-------LRLVATG  330 (495)
T ss_pred             H---HHHHHHHHHHHHH---HHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcC-------chHHHHH
Confidence            1   1111111111111   111211120  0011112222233444444555544    445533       3345667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHH
Q 008623          421 GLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL  500 (559)
Q Consensus       421 G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~  500 (559)
                      |+++.+++.+.+......                 .+.+...+..++.|+|.+...+.....+.+.+|++.+|.+.++++
T Consensus       331 g~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (495)
T PRK14995        331 GMALSALSFYGLAMTDFS-----------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIET  393 (495)
T ss_pred             HHHHHHHHHHHHHHhcCC-----------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHH
Confidence            777777776655543211                 233444556788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHhhhh
Q 008623          501 TTVALGNYLSSLLVTIVTSI  520 (559)
Q Consensus       501 ~~~~lg~~lg~~l~~~v~~~  520 (559)
                      +.+++|+.+|+.+.+.+.+.
T Consensus       394 ~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        394 MAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998753

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.90  E-value=3.5e-22  Score=212.97  Aligned_cols=356  Identities=12%  Similarity=0.079  Sum_probs=225.2

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      +...+...++...+.......+|.+.+ +++.+..+.+++.+...+...++.++.|+++||+ |||++++.+.++..++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~   96 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF   96 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence            445555667777777767777777764 5777999999999999999999999999999999 99999998887777666


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      ..+......+                  ..+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++.+
T Consensus        97 ~~~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  152 (417)
T PRK10489         97 IGLALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITM  152 (417)
T ss_pred             HHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHH
Confidence            5554321111                  1346777888999999988888888899999999876      899999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccC-CCCChhHHHHHHHHHHHhhccccCCCc
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQK-PGGSPLTRICQVVAASIRKHKVELPAD  270 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (559)
                      ...++|..+||.+++.+.+..+|++.|.+.++..++.++..+..++ .++++ +++++.++.                  
T Consensus       153 ~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~------------------  213 (417)
T PRK10489        153 LTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-LPPPPQPREHPLRSL------------------  213 (417)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCCcccccchHHH------------------
Confidence            9999999999999999988889999998877666555544333221 11100 000000000                  


Q ss_pred             cchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008623          271 KSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS  350 (559)
Q Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  350 (559)
                                                     .             .++     +.+.+.+.+.......+......    
T Consensus       214 -------------------------------~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~----  240 (417)
T PRK10489        214 -------------------------------L-------------AGF-----RFLLASPVVGGIALLGGLLTMAS----  240 (417)
T ss_pred             -------------------------------H-------------HHH-----HHHHcChHHHHHHHHHHHHHHHH----
Confidence                                           0             000     00011111111111111111111    


Q ss_pred             ccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 008623          351 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMI  430 (559)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l  430 (559)
                      .....++   .+.++..+.  -....+.+.....++.++...+..+    +.+|       .++.+.+..+.++.+++++
T Consensus       241 ~~~~~~p---~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~~~----l~~~-------~~~~~~l~~~~~~~~~~~~  304 (417)
T PRK10489        241 AVRVLYP---ALADEVWQM--GAAQIGLLYAAVPLGAALGALTSGW----LAHS-------ARPGLLMLLSTLGSFLAVG  304 (417)
T ss_pred             hHHHhhH---HHHHhccCC--ChhHhHHHHHHHHHHHHHHHHHHHH----hhhc-------cCcchHHHHHHHHHHHHHH
Confidence            1111111   111221220  0001122222333333334433333    2222       2223455666666666665


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHh
Q 008623          431 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLS  510 (559)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg  510 (559)
                      .+...                    .+.+...+..++.+++.+...+...+++.+..|++.||+++|++++..++|+.+|
T Consensus       305 ~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g  364 (417)
T PRK10489        305 LFGLM--------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIG  364 (417)
T ss_pred             HHHcc--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHH
Confidence            55432                    1334455666778888887788888999999999999999999999999999999


Q ss_pred             hHHHHHhhhhh
Q 008623          511 SLLVTIVTSIS  521 (559)
Q Consensus       511 ~~l~~~v~~~~  521 (559)
                      +.+.|.+.+..
T Consensus       365 ~~l~G~l~~~~  375 (417)
T PRK10489        365 AALLGGLGAMM  375 (417)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>PRK10504 putative transporter; Provisional

Probab=99.90  E-value=8.7e-22  Score=213.24  Aligned_cols=177  Identities=13%  Similarity=0.119  Sum_probs=152.3

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      .+.+|.+.+..++.....+.+.+.+|.|.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            345788888888888888888898988875 6999999999999999999999999999999999 99999999988888


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+.+.+.                       .+.+.+++.|+++|++.+...|...+++.|.+|+++      |+++.+
T Consensus        87 ~~~~~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  137 (471)
T PRK10504         87 LGSLFCALS-----------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMT  137 (471)
T ss_pred             HHHHHHHHh-----------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            877776654                       346778899999999999999999999999999876      899999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      +.+...++|..++|.+++++.+..||++.|.+.....++..+......
T Consensus       138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~  185 (471)
T PRK10504        138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM  185 (471)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999988766555554444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.90  E-value=1e-22  Score=210.36  Aligned_cols=166  Identities=19%  Similarity=0.326  Sum_probs=144.1

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHh
Q 008623           36 LGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLT  115 (559)
Q Consensus        36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  115 (559)
                      ++..++.........+.+|.++.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++.+++.+...
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4556667777777777787788899999999999999999999999999999999998 999999999998888855554


Q ss_pred             hhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHh
Q 008623          116 VTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSIN  195 (559)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  195 (559)
                      ++                       .+.+.+++.|++.|++.+...+...+++.|++|+++      |++.+++.+.+.+
T Consensus        81 ~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~  131 (352)
T PF07690_consen   81 FA-----------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFS  131 (352)
T ss_dssp             HH-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHH
T ss_pred             hh-----------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhh
Confidence            43                       235588999999999999999999999999999986      9999999999999


Q ss_pred             HHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          196 IGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       196 iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      +|..++|.+++.+.+..+|+++|++.++..++..++
T Consensus       132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            999999999999998899999999988877776654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.90  E-value=1e-21  Score=208.25  Aligned_cols=175  Identities=14%  Similarity=0.125  Sum_probs=145.2

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      +++|..+...+...+++.+..+......| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            34555555666666666666666555555 44578999999999999999999999999999999999 99999999988


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +..++.+.+.+.                       .+.+.+++.|++.|++.+...+...+++.|++|+++      |++
T Consensus        89 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  139 (406)
T PRK11551         89 LFGLFSLATAQA-----------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT  139 (406)
T ss_pred             HHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            887777766654                       357778899999999999999999999999999886      999


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      ++++.+...++|+.+++.+++.+.+..+|++.|++.+++.++..+.
T Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888889999998877654444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=1.9e-21  Score=205.95  Aligned_cols=174  Identities=14%  Similarity=0.191  Sum_probs=149.4

Q ss_pred             cCCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHH
Q 008623           25 KTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFS  104 (559)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  104 (559)
                      .++.|+.+..+.+..++.....|...+.+|.+ .+++|.++.+.++..+.+.+...++.++.|+++||+ |||++++.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~   92 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA   92 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence            34566666666666666666666666667665 568999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc
Q 008623          105 IIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (559)
                      ++..++.+.+.++                       .+.+.+++.|++.|++.+...+...+++.|++|+++      |+
T Consensus        93 ~~~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~  143 (394)
T PRK10213         93 VLLTLSCLLVSFA-----------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VP  143 (394)
T ss_pred             HHHHHHHHHHHHH-----------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HH
Confidence            9998888877665                       468889999999999999999999999999999886      99


Q ss_pred             cchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHH
Q 008623          185 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAV  229 (559)
Q Consensus       185 ~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~  229 (559)
                      ++.++...+.++|..++|.+++++.+..||++.|++.++..++..
T Consensus       144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998776554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.89  E-value=1.3e-21  Score=212.11  Aligned_cols=399  Identities=14%  Similarity=0.123  Sum_probs=238.8

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      +..+++..++..+........+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPT-IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            344455555555555555555554 5578999999999999999999999999999999999 99999999999999888


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +.+..+                       .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++++
T Consensus        82 ~~~~~~-----------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~  132 (485)
T TIGR00711        82 LLCGVA-----------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWG  132 (485)
T ss_pred             HHHhCc-----------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence            887765                       457788999999999999999999999999999886      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHH-HHHHHHHHhhccccCCCc
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRI-CQVVAASIRKHKVELPAD  270 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  270 (559)
                      ....+|..++|.+++++.+..||++.|++.+...++..+..++..++.++++.++.+.... ..........        
T Consensus       133 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~--------  204 (485)
T TIGR00711       133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLL--------  204 (485)
T ss_pred             HHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999999999887666555544444333322111111111110 0000000000        


Q ss_pred             cchhhhcccccccccCCcccCCCCccchh-hh----hhhhhccccccccCCCccccchhhHHHHHHHHH-HHHHHHHHHH
Q 008623          271 KSLLYETADAESNITGSRKLDHTKDFSFF-DK----AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVR-LLPIWATGII  344 (559)
Q Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~  344 (559)
                          +...+.++..    ..+........ ..    .........   ...|..  + .+....|.+.. .+...+....
T Consensus       205 ----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~  270 (485)
T TIGR00711       205 ----YGLSEGPERG----WFDSNEILILSITGLVAIIAFVVWELT---DDNPLV--D-LRLFKYRNFTIGCVYMSLLGLG  270 (485)
T ss_pred             ----HHHhhCCCCC----CCCchHHHHHHHHHHHHHHHHHHHHHc---CCCCcc--C-HHHHcCCChHHHHHHHHHHHHH
Confidence                0000000000    00000000000 00    000000000   011110  0 00111111111 1111111111


Q ss_pred             HHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH
Q 008623          345 FSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFI  424 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~  424 (559)
                      ++......+.       +++...|.  -....+.......+..++..++..+    +.+|       .++++.+.+|.++
T Consensus       271 ~~~~~~~~p~-------~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~g~~~  330 (485)
T TIGR00711       271 LYGSFYLLPL-------YLQQVLGY--TALQAGLHILPVGLAPMLSSPIAGR----MGDK-------IDPRKLVTIGLIL  330 (485)
T ss_pred             HHHHHHHHHH-------HHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-------cCcHHHHHHHHHH
Confidence            1111111111       11112220  0001122223333444455555544    3344       3444566777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHH
Q 008623          425 SILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA  504 (559)
Q Consensus       425 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~  504 (559)
                      .+++...+.....                ...+.+......++.+++.+...+.....+.+..|++++|.++|+.++.+.
T Consensus       331 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  394 (485)
T TIGR00711       331 YAVGFYWRAFTFT----------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQ  394 (485)
T ss_pred             HHHHHHHHhccCC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHH
Confidence            7777766552110                012444555667888999888888888888899999999999999999999


Q ss_pred             HHHHHhhHHHHHhhh
Q 008623          505 LGNYLSSLLVTIVTS  519 (559)
Q Consensus       505 lg~~lg~~l~~~v~~  519 (559)
                      +|+.+|+.+.+.+.+
T Consensus       395 ~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       395 LGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.89  E-value=2.4e-21  Score=204.21  Aligned_cols=173  Identities=16%  Similarity=0.232  Sum_probs=146.7

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      +.+|+.+....+..++.....+.+....+ .+++++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            35566666667777777777776666555 56788999999999999999999999999999999999 99999999998


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +.+++.+.+.++                       .+.+.+++.|++.|++.+...+...+++.|++|+++      |++
T Consensus        86 ~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~  136 (405)
T TIGR00891        86 LFSAGTLACGFA-----------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNK  136 (405)
T ss_pred             HHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhH
Confidence            888888777665                       457778899999999999999999999999999887      999


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccC--chhhhHHHHHHHHHHH
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEG--WGWGFGIPAVAMAIAV  229 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g--~~~~f~i~~~~~~i~~  229 (559)
                      +.++.+.+.++|..+++.+++.+.+..+  |++.|.+.++..++.+
T Consensus       137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887666  9999987665444443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.89  E-value=7e-22  Score=209.34  Aligned_cols=174  Identities=16%  Similarity=0.027  Sum_probs=143.6

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhh-----hHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSST-----ASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIF  103 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~  103 (559)
                      .|.+..+++..++...++....+.+|.|.+ ++|.+..+     .+++.+.+.+...++.++.|+++||+ |||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~   90 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRS   90 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHH
Confidence            345666777888888888888899999985 58888654     47888899999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcc
Q 008623          104 SIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (559)
                      .++.+++.+.+...                       .+.+.+++.|++.|++.+ ..+...+++.|++|+++      |
T Consensus        91 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~  140 (408)
T PRK09874         91 ALGMGIVMVLMGLA-----------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------S  140 (408)
T ss_pred             HHHHHHHHHHHHHH-----------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------h
Confidence            88888877776654                       457778889999998765 45777788889998876      8


Q ss_pred             ccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          184 SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       184 ~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +++.++.+...++|..++|.+++.+.+..+|++.|.+.++..++..+..++
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988899999999887766555544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.89  E-value=3.1e-21  Score=205.67  Aligned_cols=178  Identities=13%  Similarity=0.108  Sum_probs=145.7

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      +|+.++.+.+..++.......+.. ....+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            455455555555554444444443 44478999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.++.+++                       ++.+.+++.|++.|++.+...|....++.|++|+++      |++..
T Consensus        84 ~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~  134 (412)
T TIGR02332        84 GIASTATMFA-----------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARAN  134 (412)
T ss_pred             HHHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHH
Confidence            9988888776                       457788999999999999999988899999999886      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhcc------ccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          188 NWFYFSINIGALIASSVLVWIQD------NEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~------~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      ++++.+..+|..+++.+++++.+      ..|||++|++.++..++..+..++..
T Consensus       135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~  189 (412)
T TIGR02332       135 ALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL  189 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999988763      36899999988766655444444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00895 2A0115 benzoate transport

Probab=99.89  E-value=4.7e-21  Score=201.13  Aligned_cols=172  Identities=13%  Similarity=0.168  Sum_probs=139.3

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      .++.+...+...+......+.... ...++.+++|.+..+.+++.+...++..++.++.|+++||+ |||++++.+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            344444444444444444444444 44456678999999999999999999999999999999999 9999999999888


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+...+.                       .+.+.+++.+++.|++.+...+...+++.|.+|+++      |++++
T Consensus        93 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~  143 (398)
T TIGR00895        93 SVFTLLCALA-----------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAV  143 (398)
T ss_pred             HHHHHHHHHc-----------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhH
Confidence            8877776654                       346778889999999999999999999999999876      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~  230 (559)
                      ++.+.+.++|..++|.+++++.+..||++.|++.++..++..+
T Consensus       144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  186 (398)
T TIGR00895       144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL  186 (398)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence            9999999999999999999999999999999887644444433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.89  E-value=3.4e-23  Score=217.69  Aligned_cols=366  Identities=38%  Similarity=0.634  Sum_probs=241.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcc
Q 008623           97 YWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDAD  176 (559)
Q Consensus        97 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  176 (559)
                      .|+++++.++..+|++++.++.. |...             ....+...++++++++++|.|++.|++.++++||+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~-~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAI-PPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHT-SSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHh-cchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            47899999999999999877743 3211             122346789999999999999999999999999999874


Q ss_pred             hHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccccccc-CCCCChhHH-HHH
Q 008623          177 EAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ-KPGGSPLTR-ICQ  254 (559)
Q Consensus       177 ~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~  254 (559)
                         .++|.++++++|++.|+|+.+++.+.+++.++.||.+.|.++++.++++++.++..+++++.. ++.+.+..+ ...
T Consensus        67 ---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~  143 (372)
T PF00854_consen   67 ---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL  143 (372)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred             ---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence               246889999999999999999999999999999999999999999999999998888887776 666666666 344


Q ss_pred             HHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHH
Q 008623          255 VVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVR  334 (559)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  334 (559)
                      +.....+++....+....++....+..+..    .....  ...........+...   ....+  ++.++++..+.+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~k~~~~  212 (372)
T PF00854_consen  144 VLVAAFKKRKLAVPKGSSWLDWALFQYSER----SIFGI--IVFIRAAVIFFPEIF---FWALF--CQVQRVEELKALIR  212 (372)
T ss_dssp             HHHHHHHHHCCCH-HHHHHHHHHHHHHCCC----CCCCC--CCHHHHHHHHCCCHH---HHTTT--SSTTTHHHCCHHHC
T ss_pred             HHHHHHHHhhcccccchHHHHHhhhhhhhh----hhhhh--hhhccchhhhhhhhh---hcccC--Cccceeeeeeeeee
Confidence            444455554444432222222221111000    00000  001111111111100   01111  23456677777778


Q ss_pred             HHHHHHHHHHHHHHhcccchhhhhccccccCCCCCcc-ceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCC
Q 008623          335 LLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSS-FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLT  413 (559)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~  413 (559)
                      .++.+.+...+..++.+.......+...++...+  + ++++++++++++++.++++.|+.+++++|+.++ +++   .+
T Consensus       213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~  286 (372)
T PF00854_consen  213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG--GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PS  286 (372)
T ss_dssp             HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS--------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---------
T ss_pred             ccccCeEEEEeeehhhhhhhHHHHhccccccccc--cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---ch
Confidence            8888888888888888888877777777766666  6 889999999999999999999999999999882 333   78


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHH
Q 008623          414 QLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRS  493 (559)
Q Consensus       414 ~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg  493 (559)
                      ...++.+|++++.+++...+..+..++...+++|       ..+.++.+..++++.++|.+..+...+..+|.+|++..+
T Consensus       287 ~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~  359 (372)
T PF00854_consen  287 PPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPS  359 (372)
T ss_dssp             -HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SS
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhH
Confidence            8999999999999999988888776555555444       244477779999999999999999999777777777777


Q ss_pred             HHHHHHHHHH
Q 008623          494 LCSALSLTTV  503 (559)
Q Consensus       494 ~~~g~~~~~~  503 (559)
                      ..+|+++...
T Consensus       360 ~m~~~~~~~~  369 (372)
T PF00854_consen  360 SMMGIWFALS  369 (372)
T ss_dssp             SSTHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.89  E-value=2.4e-21  Score=217.49  Aligned_cols=155  Identities=18%  Similarity=0.142  Sum_probs=130.4

Q ss_pred             hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Q 008623           51 TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGP  130 (559)
Q Consensus        51 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (559)
                      ..+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++++++++.+++.++++++             
T Consensus       187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa-------------  252 (742)
T TIGR01299       187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV-------------  252 (742)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            3444566778999999999999999999999999999999999 99999999998888888877765             


Q ss_pred             CCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc
Q 008623          131 RGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~  210 (559)
                                .+.+.++++|++.|++.++..+...++++|.+|++.      |++.+++.+....+|.++++.++.++..
T Consensus       253 ----------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       253 ----------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      457788999999999999999999999999999886      9999999999999999999987765543


Q ss_pred             c-------------cCchhhhHHHHHHHHHHHHHHHhc
Q 008623          211 N-------------EGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       211 ~-------------~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      .             .+||+.+++.++..++.++..++.
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence            2             358888887776666555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=9.4e-21  Score=195.50  Aligned_cols=180  Identities=12%  Similarity=0.123  Sum_probs=164.3

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      ..|..++.+.++.|+....=+.....+|. +.+++|.|..++|+.++.|.++..++.|+...+.||+ .||++++..+.+
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence            34556788888888888888888887775 4679999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ++++.+.++++                       ++++.+.++|++.|+..|.+++...++.+++.|+++      |+++
T Consensus        88 Fi~~n~l~alA-----------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~A  138 (394)
T COG2814          88 FIVSNLLSALA-----------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRA  138 (394)
T ss_pred             HHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhH
Confidence            99999999988                       568999999999999999999999999999999997      9999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      .++...+..+...+|..++.++.+.+|||.+|++.+.+.++.++..+...|
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999988888877777666555

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.88  E-value=1.6e-21  Score=203.60  Aligned_cols=153  Identities=18%  Similarity=0.287  Sum_probs=134.9

Q ss_pred             HHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 008623           53 LVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRG  132 (559)
Q Consensus        53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (559)
                      ...++.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++...+.++               
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~---------------   79 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA---------------   79 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH---------------
Confidence            33457789999999999999999999999999999999999 99999999999888888887766               


Q ss_pred             CcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc
Q 008623          133 EETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE  212 (559)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~  212 (559)
                              .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++++.+..
T Consensus        80 --------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  145 (399)
T TIGR00893        80 --------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHF  145 (399)
T ss_pred             --------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhC
Confidence                    357889999999999999999999999999999886      999999999999999999999999998889


Q ss_pred             CchhhhHHHHHHHHHHHHHHHhc
Q 008623          213 GWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       213 g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      +|++.|.+.++..++..+..++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       146 SWQWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             CchHHHHHHHHHHHHHHHHhhhe
Confidence            99999998876655554444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.88  E-value=8.4e-21  Score=198.45  Aligned_cols=169  Identities=11%  Similarity=0.063  Sum_probs=134.0

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHH-HHHHHHHHHHHH
Q 008623           36 LGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAI-FSIIYVIGMTFL  114 (559)
Q Consensus        36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~  114 (559)
                      ++..++..++.....+.+|.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.+...++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3556777888888889999999999999999999999999999999999999999999 99887665 444445555555


Q ss_pred             hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc--hhhhhH
Q 008623          115 TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF--FNWFYF  192 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~  192 (559)
                      ..+                       ++.+.+++.|++.+.+.+...|...++..|..|+++      |.+.  .+..+.
T Consensus        82 ~~~-----------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~  132 (375)
T TIGR00899        82 AWN-----------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA  132 (375)
T ss_pred             Hhc-----------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence            544                       346667778888887777777877788888876654      5443  567777


Q ss_pred             HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          193 SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ..++|..++|.+++++.+..||++.|++.++..++..+..++
T Consensus       133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998899999999888766555544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.88  E-value=1.5e-21  Score=203.19  Aligned_cols=157  Identities=16%  Similarity=0.159  Sum_probs=131.7

Q ss_pred             HHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 008623           46 YYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP  125 (559)
Q Consensus        46 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (559)
                      .|... .+..++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+...++        
T Consensus        19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~--------   88 (377)
T TIGR00890        19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA--------   88 (377)
T ss_pred             Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence            44443 445677889999999999999999999999999999999998 99999999999999998888776        


Q ss_pred             CCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          126 VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                                     .+.+.+++.|++.|++.+...+.....+.+++|++       |+++.++...+.++|..+++.+.
T Consensus        89 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~  146 (377)
T TIGR00890        89 ---------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLI  146 (377)
T ss_pred             ---------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHH
Confidence                           46788899999999999987777778888888743       89999999999999988877677


Q ss_pred             hhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          206 VWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       206 ~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +.+.+..|||+.|.+.++..++..+..++
T Consensus       147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       147 TSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            77777789999999888766555444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.88  E-value=2.6e-21  Score=207.56  Aligned_cols=166  Identities=13%  Similarity=0.111  Sum_probs=140.0

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      ++..++..++.....+.+...+|.+. +++|++..+.+++.+.+.+...++.++.|+++||+ |||+++.++.++..++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence            33444445555554455566676665 56999999999999999999999999999999999 99999999999988888


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      ++..++                       .+.+.+.+.|++.|++.|...+...+++.|++|+++      |++++++++
T Consensus       103 ~~~~~~-----------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~  153 (434)
T PRK11663        103 ILFGFS-----------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWN  153 (434)
T ss_pred             HHHHHH-----------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHH
Confidence            877765                       457778888999999999888999999999999886      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHH
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA  228 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~  228 (559)
                      .+.++|..++|.+.+++.+..|||+.|++.++..++.
T Consensus       154 ~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        154 TAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999899999998877654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.88  E-value=6.4e-21  Score=208.39  Aligned_cols=182  Identities=15%  Similarity=0.094  Sum_probs=133.7

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhh----cCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQ----LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFS  104 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  104 (559)
                      ++.+..+.+..+........+....+..-.+.    .+.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~   93 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence            34444444444544444444444444332221    244566778999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc
Q 008623          105 IIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (559)
                      ++..++.++..++..  .               ....+...++++|++.|++.|+..+....+++|.+|+++      |+
T Consensus        94 ~~~~v~~~~~~~~~~--~---------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg  150 (502)
T TIGR00887        94 IIMIIATVASGLSPG--S---------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RG  150 (502)
T ss_pred             HHHHHHHHHHHHccC--c---------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HH
Confidence            988888877766411  0               001135679999999999999999999999999999997      99


Q ss_pred             cchhhhhHHHhHHHHHHhhhhhhhcc-----------------------ccCchhhhHHHHHHHHHHHHHHHh
Q 008623          185 SFFNWFYFSINIGALIASSVLVWIQD-----------------------NEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       185 ~~~~~~~~~~~iG~~igp~i~~~l~~-----------------------~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ++.++.+....+|..+++.++.++..                       ..+||+.|.+.++..++.++..++
T Consensus       151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~  223 (502)
T TIGR00887       151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT  223 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999887765421                       237999998777665555444333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.88  E-value=2.1e-21  Score=208.52  Aligned_cols=145  Identities=21%  Similarity=0.353  Sum_probs=123.6

Q ss_pred             ChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchh
Q 008623           64 SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQS  143 (559)
Q Consensus        64 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (559)
                      +..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.++.....                    ...+.
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~  127 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA--------------------FALSV  127 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc--------------------cccch
Confidence            388999999999999999999999999999 999999999999888888876541                    11335


Q ss_pred             HHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh---hhhccccCchhhhHH
Q 008623          144 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL---VWIQDNEGWGWGFGI  220 (559)
Q Consensus       144 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~---~~l~~~~g~~~~f~i  220 (559)
                      +.+++.|++.|++.+...+...++++|++|+++      |++++++++.+.++|..+++.++   +.+.+..+||++|.+
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence            678899999999999999999999999999887      99999999999999999999998   666677899999998


Q ss_pred             HHHHHHHHHHHHHhc
Q 008623          221 PAVAMAIAVVSFFSG  235 (559)
Q Consensus       221 ~~~~~~i~~~~~~~~  235 (559)
                      .++..++.++..++.
T Consensus       202 ~~~~~~~~~~~~~~l  216 (481)
T TIGR00879       202 QLIPAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            766555554444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.88  E-value=9.9e-21  Score=199.55  Aligned_cols=172  Identities=12%  Similarity=0.143  Sum_probs=149.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +.++.+.+..++.....+...+.+|.+ ++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            456777788888888888888878765 578999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+++.++                       ++.+.+++.|++.|++.+...+....++.|++|+++      |++.++.
T Consensus        81 ~~~l~~~~-----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  131 (382)
T PRK10091         81 GNAMFTLS-----------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAG  131 (382)
T ss_pred             HHHHHHHh-----------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHH
Confidence            88888766                       458889999999999999888888888899998875      8999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      +..+..+|..++|.+++++.+..|||++|.+.++..++..+..
T Consensus       132 ~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        132 MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998999999998887655554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=5.6e-21  Score=199.02  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=131.8

Q ss_pred             HHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 008623           53 LVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRG  132 (559)
Q Consensus        53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (559)
                      ...++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+++.++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            33467889999999999999999999999999999999999 99999999999988888888766               


Q ss_pred             CcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHh-hhhhhhccc
Q 008623          133 EETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS-SVLVWIQDN  211 (559)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp-~i~~~l~~~  211 (559)
                              .+.+.+++.|++.|++.+...+...+++.|++|+++      |+++.++.+.+.++|..++| .+++.+.+.
T Consensus        81 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881        81 --------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             --------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence                    357788899999999999999999999999999886      99999999999999999999 566777777


Q ss_pred             cCchhhhHHHHHHHHHHHHHHHh
Q 008623          212 EGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       212 ~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      .+|++.|++.++..++..+..++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       147 YSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhe
Confidence            89999998877655544443333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.87  E-value=6.8e-21  Score=199.82  Aligned_cols=161  Identities=12%  Similarity=0.105  Sum_probs=125.8

Q ss_pred             HHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 008623           42 ERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVS  121 (559)
Q Consensus        42 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~  121 (559)
                      ++..+..+.+.+|.. ++++|.+..+.+++.+.+.+++.++.++.|+++||+ |||++++........+.. ....    
T Consensus         3 ~~~~~~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~----   75 (368)
T TIGR00903         3 SQAIWVTFSPVLSLV-AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLD----   75 (368)
T ss_pred             hhHHHHHHHhhHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHH----
Confidence            445555555666544 678999999999999999999999999999999999 999877655544444332 2111    


Q ss_pred             CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHH
Q 008623          122 GLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIA  201 (559)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ig  201 (559)
                                        ..+...+++.|++.|++.+.. +......+|++|+++      |+++.++.+.+..+|..++
T Consensus        76 ------------------~~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~  130 (368)
T TIGR00903        76 ------------------PFNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFA  130 (368)
T ss_pred             ------------------hccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                              035778999999999999864 555566689999876      9999999999999999999


Q ss_pred             hhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          202 SSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       202 p~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +++++++.+..|||+.|++.++..++..+..++
T Consensus       131 ~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       131 LAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999866655554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=1.4e-20  Score=197.43  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=146.4

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      ++|.++.+....+....+.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            3344444444555556666666666665 4678999999999999999999999999999999999 9999999999888


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+.+..+                       .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  131 (385)
T TIGR00710        81 ALSSLGLALS-----------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIY  131 (385)
T ss_pred             HHHHHHHHHH-----------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHH
Confidence            8888877665                       457778899999999999999999999999999886      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ++.+...++|..++|.+++++.+..+|++.|.+.++..++..+..++
T Consensus       132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998899999998877665555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.87  E-value=1.2e-20  Score=204.43  Aligned_cols=154  Identities=16%  Similarity=0.237  Sum_probs=122.9

Q ss_pred             CCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCCCCCCCcccccCc
Q 008623           62 DQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV-SGLKPVCHGPRGEETCQVTD  140 (559)
Q Consensus        62 g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  140 (559)
                      |.+..+.+++.+.+.++..++++++|+++||+ ||||+++.+.++++++.+..++.... ....            ..+.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~------------~~~~  117 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG------------PDNT  117 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc------------ccch
Confidence            88889999999999999999999999999999 99999999999888887776643100 0000            0111


Q ss_pred             chhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhc--------ccc
Q 008623          141 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNE  212 (559)
Q Consensus       141 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~--------~~~  212 (559)
                      .....+++.|++.|++.|...+...++++|++|+++      |++++++.+.+..+|..+++.+++.+.        +..
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            335678899999999999999999999999999987      999999999999999999887665442        456


Q ss_pred             CchhhhHHHHHHHHHHHHHHHh
Q 008623          213 GWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       213 g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      |||++|++.++..++.++..++
T Consensus       192 gWr~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        192 GWRYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHc
Confidence            8999999887666655544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.87  E-value=3.3e-21  Score=208.74  Aligned_cols=152  Identities=15%  Similarity=0.089  Sum_probs=125.8

Q ss_pred             HHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC
Q 008623           54 VRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGE  133 (559)
Q Consensus        54 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (559)
                      ...+.+++|.+..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.++..++.+..+....              
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------  116 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--------------  116 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--------------
Confidence            3456789999999999999999999999999999999999 9999999888877776666554311              


Q ss_pred             cccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc-
Q 008623          134 ETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-  212 (559)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~-  212 (559)
                          ....+.+.+++.|++.|++.+...|...++++|++|+++      |+++++++..+.++|..+++.+..++.+.. 
T Consensus       117 ----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        117 ----SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             ----cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence                011467889999999999999999999999999999987      999999999999999999998887766543 


Q ss_pred             --CchhhhHHHHHHHHHHHH
Q 008623          213 --GWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       213 --g~~~~f~i~~~~~~i~~~  230 (559)
                        +|+..|.+.++..++..+
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i  206 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGF  206 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHH
Confidence              588888876665544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.87  E-value=2.9e-20  Score=191.19  Aligned_cols=323  Identities=19%  Similarity=0.247  Sum_probs=238.4

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      +.+....++.....+...+.++.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            34566777888888888888888875 6799999999999999999999999999999999 999999999999888888


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      ...+.                       ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+.
T Consensus        80 ~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  130 (352)
T cd06174          80 LLAFA-----------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSA  130 (352)
T ss_pred             HHHHh-----------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHH
Confidence            87765                       357788899999999999999999999999999986      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccc
Q 008623          193 SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKS  272 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (559)
                      ..++|..++|.+++.+.+..+|++.+.+.++..++..+...+..             +.                     
T Consensus       131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~---------------------  176 (352)
T cd06174         131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RL---------------------  176 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HH---------------------
Confidence            99999999999999999988999999888776665554433321             00                     


Q ss_pred             hhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 008623          273 LLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPI-WATGIIFSAVYSQ  351 (559)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~  351 (559)
                                                                                 +...... .............
T Consensus       177 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  197 (352)
T cd06174         177 -----------------------------------------------------------LLLLALAFFLLSFGYYGLLTY  197 (352)
T ss_pred             -----------------------------------------------------------HHHHHHHHHHHHhHHHHHHHH
Confidence                                                                       0000000 1111111111111


Q ss_pred             cchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhH-HHHHHHHHHHHHHH
Q 008623          352 MSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQ-RMGIGLFISILSMI  430 (559)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~-~~~~G~~~~~i~~l  430 (559)
                      .+...... .    +..    ....+.......+..++..++..+    +.+|.++|       + .+..+..+..++.+
T Consensus       198 ~~~~~~~~-~----~~~----~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~  257 (352)
T cd06174         198 LPLYLQEV-L----GLS----AAEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHHHh-c----CCC----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHH
Confidence            11111110 0    101    011122333444555555555554    45554433       3 56677777777776


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHh
Q 008623          431 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLS  510 (559)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg  510 (559)
                      .....+                    +.+...+..++.+++.+...+...+++.|..|++.|++.+|+.+...++++.++
T Consensus       258 ~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  317 (352)
T cd06174         258 LLALAP--------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG  317 (352)
T ss_pred             HHHHhc--------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            665432                    345667778899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhh
Q 008623          511 SLLVTIVTS  519 (559)
Q Consensus       511 ~~l~~~v~~  519 (559)
                      +.+.+.+.+
T Consensus       318 ~~i~g~l~~  326 (352)
T cd06174         318 PLLAGLLLD  326 (352)
T ss_pred             HHHHHHHhc
Confidence            999999875

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.87  E-value=3.6e-20  Score=196.17  Aligned_cols=160  Identities=16%  Similarity=0.133  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhh
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTV  116 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  116 (559)
                      +.....+..++.+.+.+| .+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.+.+++
T Consensus        16 ~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~   93 (393)
T PRK09705         16 LIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMREL   93 (393)
T ss_pred             HHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHH
Confidence            334444444455666666 45679999999999999999999999999999999999 9999999999999999999987


Q ss_pred             hhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhH
Q 008623          117 TASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINI  196 (559)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  196 (559)
                      +                       ++++.++++|++.|++.+...+....++.|++| ++      |+++++.+..+.++
T Consensus        94 a-----------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~  143 (393)
T PRK09705         94 Y-----------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMG  143 (393)
T ss_pred             C-----------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHH
Confidence            7                       456778899999999999999999999999987 44      89999999999999


Q ss_pred             HHHHHhhhhhhhcccc-CchhhhHHHHHHHHHH
Q 008623          197 GALIASSVLVWIQDNE-GWGWGFGIPAVAMAIA  228 (559)
Q Consensus       197 G~~igp~i~~~l~~~~-g~~~~f~i~~~~~~i~  228 (559)
                      |..+++.+++++.++. +||+.+.+.++..++.
T Consensus       144 g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        144 GGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            9999999999888775 7998877655443333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=2.2e-20  Score=198.29  Aligned_cols=159  Identities=11%  Similarity=0.102  Sum_probs=132.9

Q ss_pred             HHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 008623           45 AYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLK  124 (559)
Q Consensus        45 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (559)
                      ....+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||+++.+.++..++.+....+       
T Consensus        28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-------   98 (406)
T PRK15402         28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA-------   98 (406)
T ss_pred             hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH-------
Confidence            44445555655 4578999999999999999999999999999999999 99999999988888887777655       


Q ss_pred             CCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhh
Q 008623          125 PVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSV  204 (559)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i  204 (559)
                                      ++.+.+++.|++.|++.+...+...+++.|.+|+++      |.+..++.+....+|..++|.+
T Consensus        99 ----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i  156 (406)
T PRK15402         99 ----------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLV  156 (406)
T ss_pred             ----------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            346778889999999999888888899999999876      8888888888888999999999


Q ss_pred             hhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          205 LVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       205 ~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ++++.+..+|+++|++.++..++..+..+.
T Consensus       157 ~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        157 GAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             HHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            999988889999998877766655544333

>TIGR00897 2A0118 polyol permease family

Probab=99.87  E-value=4e-20  Score=196.37  Aligned_cols=170  Identities=14%  Similarity=0.049  Sum_probs=140.2

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      .+.||++....++.++...+.+....+++.|+ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            45677888888888888888888888899888 57899999999999999999999999999999999 99999999998


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +..++.+.+.....                   ...+.+.+++.|++.|++.+...+...+.+.+.+|+++      |++
T Consensus        87 ~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~  141 (402)
T TIGR00897        87 LWCVGHAAFIVFGL-------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSS  141 (402)
T ss_pred             HHHHHHHHHHHHhc-------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHH
Confidence            88877655432100                   01246677788999999988777777788889988886      999


Q ss_pred             chhhhhHHHhHHH-HHHhhhhhhhccccCchhhhHHHH
Q 008623          186 FFNWFYFSINIGA-LIASSVLVWIQDNEGWGWGFGIPA  222 (559)
Q Consensus       186 ~~~~~~~~~~iG~-~igp~i~~~l~~~~g~~~~f~i~~  222 (559)
                      +.++++.+.++|. .++|.+++++.+..||+..++...
T Consensus       142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            9999999999996 589999999988888765555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=4.8e-20  Score=194.19  Aligned_cols=156  Identities=10%  Similarity=0.071  Sum_probs=136.5

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      .|.++.+++..++.......+.+.+|.|.+ ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            345788888888999888888899998886 6899999999999999999999999999999999 99999999999988


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.....++                       ++.+.+.+.|++.|++.+...+...+.+.+..++++      |++.++
T Consensus        83 ~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  133 (381)
T PRK03633         83 AGCAGLGLM-----------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA  133 (381)
T ss_pred             HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            888877765                       457888899999999999888887777788888775      899999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCch
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWG  215 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~  215 (559)
                      +++.+.++|..+||.+++.+.+...+.
T Consensus       134 ~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        134 AYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccch
Confidence            999999999999999999887654333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.86  E-value=2.1e-20  Score=199.58  Aligned_cols=165  Identities=15%  Similarity=0.179  Sum_probs=140.9

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      +++.+....+..+...+..+.... +..++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            344455555555655565555544 44466789999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+...++                       .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.
T Consensus        94 ~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~  144 (426)
T PRK12307         94 SVGTGLSGLA-----------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKAS  144 (426)
T ss_pred             HHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhh
Confidence            9988887776                       457889999999999999999999999999999886      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV  223 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~  223 (559)
                      ++++.+.++|..+++.+.+.+.+..||++.|++.+.
T Consensus       145 ~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        145 AFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            999999999999999999999888999999987554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.86  E-value=6.5e-21  Score=205.79  Aligned_cols=149  Identities=11%  Similarity=0.044  Sum_probs=123.4

Q ss_pred             HHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcc
Q 008623           56 YFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEET  135 (559)
Q Consensus        56 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (559)
                      .+.+++|.+.++.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+.++++                  
T Consensus        44 ~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~------------------  104 (455)
T TIGR00892        44 ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS------------------  104 (455)
T ss_pred             HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh------------------
Confidence            45678999999999999999999999999999999998 99999999998888887777665                  


Q ss_pred             cccCcchhHHHHH-HHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCc
Q 008623          136 CQVTDAQSATFFV-ALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGW  214 (559)
Q Consensus       136 ~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~  214 (559)
                           .+.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++++.+..||
T Consensus       105 -----~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw  172 (455)
T TIGR00892       105 -----SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGW  172 (455)
T ss_pred             -----hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence                 23454543 4678899988766666778888886 44      89999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHhc
Q 008623          215 GWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       215 ~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      |++|++.+++.+++.+..++.
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999998887666555444443

>PRK03699 putative transporter; Provisional

Probab=99.86  E-value=1e-19  Score=192.58  Aligned_cols=173  Identities=9%  Similarity=0.086  Sum_probs=142.7

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      ++|..+..++..++.....+.+...+|. +.+++|.|..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            4455666666777666666666666665 5678999999999999999999999999999999999 9999999999888


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      +++.+++.++                       ++.+.+.+.|++.|++.+...+...+++.|.+|+++      |++..
T Consensus        83 ~i~~~l~~~~-----------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~  133 (394)
T PRK03699         83 ILAVAGLMFS-----------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRL  133 (394)
T ss_pred             HHHHHHHHHc-----------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHH
Confidence            8888877665                       457778899999999999888889999999998876      89998


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhcc-ccCchhhhHHHHHHHHHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQD-NEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~-~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      +..+...++|+.++|.+.+++.+ ..|||++|.+.++..++..+.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            88888889999999998887754 578999998777655544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=3.8e-20  Score=199.62  Aligned_cols=171  Identities=16%  Similarity=0.099  Sum_probs=129.0

Q ss_pred             HhhHHHHHHHHHHhh---hhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           35 ILGNECCERLAYYGM---STNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        35 ~~~~~~~~~~~~~~~---~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      ++...++.....|..   ......|+.++ |.+..+.+++.+.+.+...++.+++|+++||+ |||++++.+.++.+++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~  107 (452)
T PRK11273         30 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVM  107 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHH
Confidence            333344444444433   23344567777 99999999999999999999999999999999 99999999998888888


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +.+.+...                   ...+.+.+++.|++.|++.+...+.....+.|++|+++      |++++++++
T Consensus       108 ~~~~~~~~-------------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~  162 (452)
T PRK11273        108 LFMGFVPW-------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWN  162 (452)
T ss_pred             HHHHhhhc-------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHH
Confidence            77765410                   01246677888999999999888888888999999886      999999999


Q ss_pred             HHHhHHHH-HHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          192 FSINIGAL-IASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       192 ~~~~iG~~-igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      .+.++|+. ++|+++..+....||+++|++.++..++..+..
T Consensus       163 ~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        163 CAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999874 456544333334589999998776555543333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.86  E-value=1.5e-19  Score=193.75  Aligned_cols=169  Identities=20%  Similarity=0.237  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcC---CChhhhHH---HHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLD---QSSSTASK---NVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~---~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      +..+++...... .+.+..++.++++   .+..+.+.   +.+...++..++.+++|+++||+ ||||++..+.+++.++
T Consensus        29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence            334444444443 4556667888874   44444333   33444455558999999999999 9999999999999999


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+.++++   |++..            .....+..+.+.|+++|++.|+..|...++++|++|+++      |+++.++.
T Consensus       107 ~~~~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~  165 (432)
T PRK10406        107 SLVIACL---PGYET------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQ  165 (432)
T ss_pred             HHHHhhc---CCchh------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHH
Confidence            9888765   21000            000124568899999999999999999999999999987      99999988


Q ss_pred             hHHHhHHHHHHhhhhhhhc--------cccCchhhhHHHHHHHHHH
Q 008623          191 YFSINIGALIASSVLVWIQ--------DNEGWGWGFGIPAVAMAIA  228 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~--------~~~g~~~~f~i~~~~~~i~  228 (559)
                      +.+.+.|..+++.+...+.        +.+|||++|++.++..++.
T Consensus       166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            8888888888876654443        2579999999877654443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.86  E-value=1.6e-19  Score=191.20  Aligned_cols=174  Identities=9%  Similarity=0.068  Sum_probs=124.2

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHH-HHHhhhHHHHHhHhccchhHHHHH-HHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGT-CYITPLIGAFLADAYLGRYWTIAI-FSIIYVI  109 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~-~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~  109 (559)
                      .+..++..++..++...+.+.++.|+.+++|.+.++.|.+.+...+. ..++++++|+ +||+ ||||.++. +.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL   94 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence            46777788999999998999999999999999999999998766554 4455555566 9999 99987654 4444445


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc--cch
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS--SFF  187 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~  187 (559)
                      +.....++                       .+.+.+++.+.+.+...+...|....+..|..++++      |.  ...
T Consensus        95 ~~~~~~~~-----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (393)
T PRK15011         95 ACTLFAWN-----------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFS  145 (393)
T ss_pred             HHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHH
Confidence            55554444                       345555444444333344556777777777666543      32  334


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      ++.+.+.++|..+||.+++++.+..|||.+|++.++..++..+..+...
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  194 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL  194 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence            6788889999999999999999989999999988766555544444333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.85  E-value=2e-19  Score=190.55  Aligned_cols=164  Identities=12%  Similarity=0.082  Sum_probs=134.9

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++.++...++..++...+...++.. .+++|.+..+.+++.+.+.+...++.|++|+++||+ ||||+++.+.++.++
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            346667777888777666555555544 578899999999999999999999999999999999 999999999998888


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+.+...                       .+   .++.|+++|++.+...|...+++.|++|+++      |+++.++
T Consensus        81 ~~~~~~~~-----------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~  128 (393)
T PRK11195         81 GCLLMLFG-----------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGW  128 (393)
T ss_pred             HHHHHHHH-----------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            77766543                       12   2677899999999999999999999999887      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA  228 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~  228 (559)
                      .+...++|..+||.++|++.+. .|+.++.+.+...+++
T Consensus       129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999875 3666666555443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.85  E-value=5.3e-20  Score=200.49  Aligned_cols=168  Identities=17%  Similarity=0.241  Sum_probs=142.6

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      .+|+.+..+.+..++..+........+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            345555566666666666655555444 456788999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+.+.+.                       .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++
T Consensus        95 ~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~  145 (496)
T PRK03893         95 FSVGTLACGFA-----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKA  145 (496)
T ss_pred             HHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            88888877765                       457788999999999999999999999999999886      9999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHH
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAM  225 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~  225 (559)
                      .++.+.+.++|..++|.+.+++.+..+|++.|.+.++..
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999988755433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.85  E-value=9.1e-20  Score=192.76  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=143.3

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      +.+|.++.+....++.........+.+|.+ .+++|.++.+.+++.+.+.+...++.++.|+++||+ |||++++.+.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            345666666677777777777666777655 478999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+.....                       .+.+.+++.|++.|++.+...+....+..|.+++++      ++++
T Consensus        83 ~~~~~~~~~~~-----------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  133 (394)
T PRK11652         83 FILGTLVALFA-----------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHA  133 (394)
T ss_pred             HHHHHHHHHHH-----------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHH
Confidence            88887777654                       346778899999999988777777778888887765      8888


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~  230 (559)
                      .++.+.+..++..++|.+++++.+..||+++|++.++..++..+
T Consensus       134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888999999987765544433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.84  E-value=6e-19  Score=186.06  Aligned_cols=344  Identities=11%  Similarity=-0.010  Sum_probs=216.8

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH-HHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII-YVIGM  111 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~  111 (559)
                      +.+....++...++....+++|.|++ ++|.|..+.+++.+.+.+...+++++.|.++||+ ||++.......+ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            44556666666766777899999995 6899999999999999999999999999999998 985433222211 11111


Q ss_pred             H-HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          112 T-FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       112 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      + ....+                       ++.+.+++.|.+.+.+.+...|...++..+.  ++      +|++.++..
T Consensus        85 ~~~~~~~-----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~------~~~~~~g~~  133 (382)
T TIGR00902        85 AAFSAGA-----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QK------QFGLDYGKV  133 (382)
T ss_pred             HHHHHhh-----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HH------HcCCCccHH
Confidence            1 11122                       4577888889989988888888877776543  23      388999999


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCc
Q 008623          191 YFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPAD  270 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (559)
                      ....++|..++|.+++++.+..||+..|.+.+...++.++ .+...++.   ++++++..+                   
T Consensus       134 ~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~-------------------  190 (382)
T TIGR00902       134 RLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAIPED-------------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCcccccc-------------------
Confidence            9999999999999999999999999998876544332222 22222111   111000000                   


Q ss_pred             cchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008623          271 KSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS  350 (559)
Q Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  350 (559)
                                +           .+                      ..+  ...++.+.|++...+   +...+......
T Consensus       191 ----------~-----------~~----------------------~~~--~~~~~l~~~~~~~~l---~~~~l~~~~~~  222 (382)
T TIGR00902       191 ----------E-----------SQ----------------------GDS--AFIALLKNPMNLRFL---AAVCLIQGAHA  222 (382)
T ss_pred             ----------c-----------cc----------------------cch--hHHHHHcChHHHHHH---HHHHHHHHHHH
Confidence                      0           00                      000  000111122222221   11222222233


Q ss_pred             ccchhhhhccccccCCCCCccceeCccc---cccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008623          351 QMSSLFVLQGERMDTHVGNSSFKIPPAS---LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISIL  427 (559)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i  427 (559)
                      ++.+....   ++++ .|     .++..   ...+..+..++..++.        +|+.+|   ++.++.+.+|.++.++
T Consensus       223 ~~~~~~~~---~l~~-~g-----~s~~~~g~l~~~~~~~~i~~~~~~--------~~l~~r---~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       223 AYYGFSAI---YWQA-AG-----ISASATGLLWGIGVLAEIIIFAFS--------NKLFQN---CSARDLLLISAIACVG  282 (382)
T ss_pred             HHHHHHHH---HHHH-CC-----CCHhHHHHHHHHHHHHHHHHHHHh--------HHHHhh---CCHHHHHHHHHHHHHH
Confidence            33332221   1111 23     22211   2222333333333333        333333   5666778888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHH-HHHHHH
Q 008623          428 SMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALG  506 (559)
Q Consensus       428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg  506 (559)
                      .+..++..+                    +.+.+.+..++.++..++..+....++.+. |++.+++++++++ +..++|
T Consensus       283 ~~~~~~~~~--------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g  341 (382)
T TIGR00902       283 RWAIIGAIE--------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL  341 (382)
T ss_pred             HHHHHHhHh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence            887776532                    445566667999999999999999999988 9999999999987 578899


Q ss_pred             HHHhhHHHHHhhhhh
Q 008623          507 NYLSSLLVTIVTSIS  521 (559)
Q Consensus       507 ~~lg~~l~~~v~~~~  521 (559)
                      ..+++.+.|.+.+..
T Consensus       342 ~~~g~~~~G~l~~~~  356 (382)
T TIGR00902       342 IAIFTAFAGFIYPTL  356 (382)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998753

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09952 shikimate transporter; Provisional

Probab=99.84  E-value=3.8e-19  Score=191.08  Aligned_cols=176  Identities=11%  Similarity=0.081  Sum_probs=125.1

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhc--CCChhhhHHHH-----HHHHHHHHHhhhHHHHHhHhccchhHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQL--DQSSSTASKNV-----LDWSGTCYITPLIGAFLADAYLGRYWTI  100 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grr~~~  100 (559)
                      ++|..+...+..+++......+....+.++.+++  +.++. .+.+.     +...++..++.++.|+++||+ |||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            3455555555555555555544444555666655  56655 34433     233445667788889999999 999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhh
Q 008623          101 AIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  180 (559)
                      ..+.+++.++.++++++.+...               ........+++.|+++|++.|+..+....++.|++|+++    
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----  158 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFST---------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK----  158 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHH---------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence            9999999999888887621000               000012357889999999999999999999999999986    


Q ss_pred             hccccchhhhhHHHhHHHHHHhhhhhhhc--------cccCchhhhHHHHHHHH
Q 008623          181 KHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWGWGFGIPAVAMA  226 (559)
Q Consensus       181 ~~r~~~~~~~~~~~~iG~~igp~i~~~l~--------~~~g~~~~f~i~~~~~~  226 (559)
                        |++..+..+.+..+|..+++.+..++.        +.+|||++|++.++..+
T Consensus       159 --rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        159 --KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence              999988888888899888877666554        35799999998776543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=6.7e-20  Score=191.14  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=135.1

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .+|..++..+......+.+.+++|.++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456777788888888888888898889999999999999999999999999999999999999 9999999999999988


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcc-hhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      .+.+.++                       . +.+.+++.|++.|++.+.. +...++++|++|+++      |++..++
T Consensus        81 ~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~  130 (366)
T TIGR00886        81 CLWAGLA-----------------------VQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGL  130 (366)
T ss_pred             HHHHHHH-----------------------hhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHH
Confidence            8887766                       3 5778889999999986654 556789999999887      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhcc----------ccCchhhhHH
Q 008623          190 FYFSINIGALIASSVLVWIQD----------NEGWGWGFGI  220 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~----------~~g~~~~f~i  220 (559)
                      +....++|..+++.+++.+..          ..+|++.|++
T Consensus       131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            888888888887777665543          3479999843

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.84  E-value=8.5e-20  Score=197.47  Aligned_cols=147  Identities=14%  Similarity=0.172  Sum_probs=127.2

Q ss_pred             hcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccC
Q 008623           60 QLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVT  139 (559)
Q Consensus        60 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (559)
                      ++|++..+.|.+.+.+.+++.++.+++|+++||+ |||+++..+.++..++.++..+...                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999887777766644311                    


Q ss_pred             cchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc-Cchhhh
Q 008623          140 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGF  218 (559)
Q Consensus       140 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~-g~~~~f  218 (559)
                       .+.+.+++.|++.|++.+...|....+++|++|+++      |+++.++.+.+.++|..++|.+++++.+.. ||+++|
T Consensus       129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f  201 (465)
T TIGR00894       129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF  201 (465)
T ss_pred             -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence             235668889999999999999999999999999987      999999999999999999999999998884 999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 008623          219 GIPAVAMAIAVVSFFS  234 (559)
Q Consensus       219 ~i~~~~~~i~~~~~~~  234 (559)
                      ++.++..++..+..+.
T Consensus       202 ~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       202 YVFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            9888766555444433

>PRK11043 putative transporter; Provisional

Probab=99.84  E-value=2.6e-19  Score=189.74  Aligned_cols=163  Identities=15%  Similarity=0.219  Sum_probs=133.1

Q ss_pred             HHHHHHhhhhhHHHH--HhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhc
Q 008623           42 ERLAYYGMSTNLVRY--FKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTAS  119 (559)
Q Consensus        42 ~~~~~~~~~~~l~~y--l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  119 (559)
                      ...++++...++|.+  +++++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++..+.++..++.+...+.  
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--   91 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV--   91 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh--
Confidence            333444444444433  5678999999999999999999999999999999999 99999999988888877777655  


Q ss_pred             cCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHH
Q 008623          120 VSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGAL  199 (559)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  199 (559)
                                           .+.+.+++.|++.|++.+...+...+++.|.+|+++      +.+.++..+...++|..
T Consensus        92 ---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  144 (401)
T PRK11043         92 ---------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPA  144 (401)
T ss_pred             ---------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHH
Confidence                                 357778889999999988777777888999999875      78888888888899999


Q ss_pred             HHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          200 IASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       200 igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ++|.+++++.+..||++.|++.++..++..+..+.
T Consensus       145 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        145 LAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998887666555444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.84  E-value=2e-19  Score=191.60  Aligned_cols=180  Identities=14%  Similarity=0.020  Sum_probs=133.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++...+..+......+.+.+..+..-++++|+|.+|.+++.+.+.+.+.++.++.|++.||+ |.|+++.++.++..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence            6677666665555555555555444444448999999999999999999999999999999999 999999999998888


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      .++.++++..                  ...++++.+++.|++.|++ +...+.....+++++|+++      |+++.++
T Consensus       113 ~~~~~~~a~~------------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi  167 (462)
T PRK15034        113 PCVWLGIAVQ------------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGI  167 (462)
T ss_pred             HHHHHHHHHc------------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHH
Confidence            8887776411                  1114578899999999998 6677889999999999987      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhc-----c-------------ccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          190 FYFSINIGALIASSVLVWIQ-----D-------------NEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~-----~-------------~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      .....++|..+++++...+.     .             ..+|+.++++..+..++..+..++.
T Consensus       168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86666777765554443321     2             2236666666666555555555544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=4.5e-20  Score=197.56  Aligned_cols=348  Identities=18%  Similarity=0.184  Sum_probs=231.4

Q ss_pred             hhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc
Q 008623           59 HQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQV  138 (559)
Q Consensus        59 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (559)
                      .+++.++.+.+++.+.+..+..++...+|+++||+ |-|+++..+.++.+++.++..++..                   
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------  125 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------  125 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            36788999999999999999999999999999999 9999999999999999999988742                   


Q ss_pred             CcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc-cCchhh
Q 008623          139 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWG  217 (559)
Q Consensus       139 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~-~g~~~~  217 (559)
                        .+.+.+++.|+++|++.|...|+...+.+++.|++|      |++..++.+.+.++|.+++..++|++.+. .||+++
T Consensus       126 --~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si  197 (466)
T KOG2532|consen  126 --IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI  197 (466)
T ss_pred             --hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence              234467899999999999999999999999999998      99999999999999999999999999998 999999


Q ss_pred             hHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccc
Q 008623          218 FGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFS  297 (559)
Q Consensus       218 f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  297 (559)
                      |++.++..++..++++...+.    .|.+.+..                 .+++....+.++.++               
T Consensus       198 fY~~g~~g~i~~~~w~~~~~d----~P~~h~~i-----------------s~~El~~I~~~k~~~---------------  241 (466)
T KOG2532|consen  198 FYVFGIVGLIWFILWFLFYSD----SPSKHPNI-----------------SEKELKYIEKGKSEA---------------  241 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC----CcccCCCC-----------------CHHHHHHHHhccccc---------------
Confidence            999998776666555444332    11111100                 000000011111100               


Q ss_pred             hhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCcccee-Cc
Q 008623          298 FFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKI-PP  376 (559)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~  376 (559)
                               +..+  +...||           |.+++..+++......+.-.........+.+.++.+.++   +++ ..
T Consensus       242 ---------~~~~--~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~---f~v~~~  296 (466)
T KOG2532|consen  242 ---------HVKK--KPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG---FDVRET  296 (466)
T ss_pred             ---------ccCC--CCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC---CChhhh
Confidence                     0000  023456           345554555555544444444444445555555555444   333 45


Q ss_pred             cccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 008623          377 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM--GIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM  454 (559)
Q Consensus       377 ~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~--~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~  454 (559)
                      +.+++++.+...+...+.+.+.|.+.+| .-+   .+..+|+  .+++...++.++.+++....                
T Consensus       297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~~----------------  356 (466)
T KOG2532|consen  297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSDE----------------  356 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCCC----------------
Confidence            5677777776666666666665555555 222   3334455  35666666666666654210                


Q ss_pred             cchhHHHHHHHHHHHHHHHH-HhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          455 PMSIMWQVPQYFLIGCAEVF-TFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       455 ~~~~~~~~~~~~l~~~~~~~-~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                        .. +..+.....+.+..+ ..+..+.-..+.+| ++-+..+|+.+....+++.++|++++.+.+
T Consensus       357 --~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  357 --HR-LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             --cc-hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence              11 122222222222222 22333333334465 669999999999999999999999999874

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.84  E-value=5.7e-19  Score=192.46  Aligned_cols=176  Identities=17%  Similarity=0.118  Sum_probs=126.3

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhh-hHH-----HHHHHHHHHHHhhhHHHHHhHhccchhHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSST-ASK-----NVLDWSGTCYITPLIGAFLADAYLGRYWTIAI  102 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~  102 (559)
                      ++.+....+..+++..-+.. ..+...++.++++.+..+ ..+     +.+...++..++.++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            34444445555555544443 344556778888654422 122     24666788889999999999999 99999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc
Q 008623          103 FSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (559)
                      +.+++.++.++++++.+...               ..-..+..+.+.|+++|++.|+..+...++++|++|+++      
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~---------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYAT---------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHH---------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence            99999999999887621000               000011247899999999999999999999999999987      


Q ss_pred             cccchhhhhHHHhHHHHHHhhhhhhhc--------cccCchhhhHHHHHHHHH
Q 008623          183 KSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWGWGFGIPAVAMAI  227 (559)
Q Consensus       183 r~~~~~~~~~~~~iG~~igp~i~~~l~--------~~~g~~~~f~i~~~~~~i  227 (559)
                      |++..++...+..+|..+|+.+...+.        ..+|||++|++.++..++
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            999999988888888888876554332        357999999987654443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.83  E-value=1.1e-18  Score=186.17  Aligned_cols=162  Identities=14%  Similarity=0.112  Sum_probs=135.7

Q ss_pred             HHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 008623           42 ERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVS  121 (559)
Q Consensus        42 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~  121 (559)
                      ..+......+.+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.+.+.++    
T Consensus        28 ~~~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a----  101 (413)
T PRK15403         28 AYLTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT----  101 (413)
T ss_pred             HHHHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc----
Confidence            33344444555554 5678999999999999999999999999999999999 99999999999888888887765    


Q ss_pred             CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHH
Q 008623          122 GLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIA  201 (559)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ig  201 (559)
                                         ++.+.++++|+++|++.+...+....++.|.+|+++      |++.+++.+.+.++|..+|
T Consensus       102 -------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g  156 (413)
T PRK15403        102 -------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIG  156 (413)
T ss_pred             -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                               457788999999999988766666778889999876      8999999999999999999


Q ss_pred             hhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          202 SSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       202 p~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      |.+++.+.+..||++.|++.++..+++.+..++
T Consensus       157 ~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        157 PLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988889999999888766666554333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.83  E-value=2.3e-19  Score=191.55  Aligned_cols=368  Identities=8%  Similarity=-0.053  Sum_probs=210.8

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+|.+....++...+++.+.++++.|+++++|++..+.+.+.+.+.+...+++++.|+++||+ ||||+++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4577777888888888888899999999999999999999999999999999999999999999 999999887655444


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +..........+.                   .......+..+.++..+...+.....+.++.++..    ++++..++.
T Consensus        89 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~  145 (420)
T PRK09528         89 LFGPFFIYVFAPL-------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGR  145 (420)
T ss_pred             HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchh
Confidence            3322211100000                   00011122222333333333333333334432211    136777888


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCC
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPA  269 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (559)
                      .+...++|..++|.+++++.+ .+|+++|++.++..++.++..+...++.++++...++ .                .. 
T Consensus       146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~-  206 (420)
T PRK09528        146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-L----------------GA-  206 (420)
T ss_pred             hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-h----------------hc-
Confidence            888899999999999998876 5899999887766665555444433221110000000 0                00 


Q ss_pred             ccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH-HHHH
Q 008623          270 DKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGII-FSAV  348 (559)
Q Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~  348 (559)
                                 +           .+..+.-+...                      ..+.+.+.......+.... +...
T Consensus       207 -----------~-----------~~~~~~~~~~~----------------------~l~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        207 -----------N-----------ASAVSLKDALA----------------------LLKLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             -----------c-----------cccccHHHHHH----------------------HccCCCeEeehHHHHHHHHHHHHH
Confidence                       0           00000000000                      0000111111111111111 1222


Q ss_pred             hcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008623          349 YSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILS  428 (559)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~  428 (559)
                      ..+.+.++...  ..+...+  .  ...+....+..+...+..++..+    +.+|+++|       +.+..+.++.+++
T Consensus       243 ~~~~~~~~~~~--~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~l~~~~  305 (420)
T PRK09528        243 DQQFPNFFASF--FATPEQG--T--RVFGYLNSFQVFLEALIMFFAPF----IINRIGAK-------NALLLAGTIMAVR  305 (420)
T ss_pred             HHHHHHHHHHH--HhccCcc--h--HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcc-------hhhHHHHHHHHHH
Confidence            22223322211  0011111  0  01112233333444455555554    55554443       4566667777666


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHH-HHHHHHHHH
Q 008623          429 MIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTVALGN  507 (559)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~  507 (559)
                      ...+++.+                    +.++++...++.+++.....+...+++.+..|++.+++..++ +++..++|+
T Consensus       306 ~~l~~~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        306 IIGSGFAT--------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA  365 (420)
T ss_pred             HHHHHhcc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH
Confidence            66655432                    445556667778887777777788899999999999988766 678899999


Q ss_pred             HHhhHHHHHhhhhh
Q 008623          508 YLSSLLVTIVTSIS  521 (559)
Q Consensus       508 ~lg~~l~~~v~~~~  521 (559)
                      .+++.+.|++.+..
T Consensus       366 ~ig~~~~G~l~~~~  379 (420)
T PRK09528        366 VFLSTLAGNLYDSI  379 (420)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998743

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=4.8e-19  Score=187.53  Aligned_cols=180  Identities=6%  Similarity=-0.151  Sum_probs=132.8

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+|.+....++...++..+.+++|.|+++++|.+..+.+++.+.+.+...++.++.|+++||+ |||+.++.+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4467788888899999999999999999999999999999999999999999999999999999 999999887665554


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +..........+.               ..........+.+++.+++.+...+....+..|..+ +       ++..++.
T Consensus        81 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-------~~~~~g~  137 (396)
T TIGR00882        81 LFAPFFIYVFGPL---------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-N-------SNFEYGK  137 (396)
T ss_pred             HHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-h-------cccccch
Confidence            4332221100000               000112334566777888888777777666655322 1       3456677


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      .....++|..+||.+++.+.+ .+|+.+|++.+...++..+..+.
T Consensus       138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999997765 59999998887666555444333

>TIGR00898 2A0119 cation transport protein

Probab=99.83  E-value=4.5e-19  Score=193.76  Aligned_cols=147  Identities=12%  Similarity=0.198  Sum_probs=127.4

Q ss_pred             HHhhhcCCC---hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 008623           56 YFKHQLDQS---SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRG  132 (559)
Q Consensus        56 yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (559)
                      -+.+++|++   ..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.+...++               
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---------------  177 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---------------  177 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence            456789998   89999999999999999999999999998 99999999999888888877765               


Q ss_pred             CcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc
Q 008623          133 EETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE  212 (559)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~  212 (559)
                              .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+.+.++...+..+|.+++|.++..+.+  
T Consensus       178 --------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~--  241 (505)
T TIGR00898       178 --------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD--  241 (505)
T ss_pred             --------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence                    457889999999999999999999999999999987      9999999989999999999988766543  


Q ss_pred             CchhhhHHHHHHHHHHHHHHHhc
Q 008623          213 GWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       213 g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                       ||+.|++.++..++..+..++.
T Consensus       242 -wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       242 -WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhc
Confidence             9999998887666655554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.82  E-value=1.1e-18  Score=186.95  Aligned_cols=358  Identities=14%  Similarity=0.139  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc---cchhH-HHHHHHHHHHHHHHH
Q 008623           38 NECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY---LGRYW-TIAIFSIIYVIGMTF  113 (559)
Q Consensus        38 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~~  113 (559)
                      ..+..+..+..+..+++.|+.+++|+++.++|.+.+...+...+..|+.|+++||.   +|||| .++.+.+..+++.++
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~   86 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL   86 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence            34556666777778899999999999999999999999999999999999999983   38755 566677777777666


Q ss_pred             HhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHH
Q 008623          114 LTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFS  193 (559)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  193 (559)
                      +...   |..              ........+.+.+.+.+++.+.......++..|..++.+     +|++..++.+..
T Consensus        87 ~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~  144 (437)
T TIGR00792        87 LFTT---PDF--------------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFG  144 (437)
T ss_pred             HHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHH
Confidence            6544   210              001224556666777888888888888889999886533     389999998888


Q ss_pred             HhHHHHHHhhhhhhhc-------cccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhcccc
Q 008623          194 INIGALIASSVLVWIQ-------DNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVE  266 (559)
Q Consensus       194 ~~iG~~igp~i~~~l~-------~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (559)
                      .++|+.+++.+.+.+.       +..+|++.+.+.+++.++..+..++..++.+++++.+++.                 
T Consensus       145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~-----------------  207 (437)
T TIGR00792       145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK-----------------  207 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc-----------------
Confidence            8888877766655443       2457998888777666555544443333211100000000                 


Q ss_pred             CCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008623          267 LPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFS  346 (559)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  346 (559)
                                                  ..+..+.                +     +.+.+.|.+...+...+.....+
T Consensus       208 ----------------------------~~~~~~~----------------~-----~~l~~~~~~~~~~~~~~~~~~~~  238 (437)
T TIGR00792       208 ----------------------------KLSLKQI----------------F-----KALFKNDQLLILCLAYLFYNLAF  238 (437)
T ss_pred             ----------------------------CCCHHHH----------------H-----HHHhCCHHHHHHHHHHHHHHHHH
Confidence                                        0000000                0     00111122222221111111111


Q ss_pred             HHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008623          347 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI  426 (559)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~  426 (559)
                      .........+.      +..++. .  ...+.+..+..+..++..++..+    +.+|++       +++.+.+|.++.+
T Consensus       239 ~~~~~~~~~~~------~~~~~~-~--~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g-------~~~~~~~~~~~~~  298 (437)
T TIGR00792       239 NIKNGVQVYYF------TYVLGD-P--ELFSYMGSIAIVAGLIGVLLFPR----LVKKFG-------RKILFAGGILLMV  298 (437)
T ss_pred             HHHcchhheeE------eeecCC-h--HHHHHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHH
Confidence            11111111111      111110 0  00111222333444444555544    455543       3356667777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCC-------hhhHHHHHHHH
Q 008623          427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALS  499 (559)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P-------~~~rg~~~g~~  499 (559)
                      ++++...+..                   .+.+.+.+..++.+++.+...+..++++.|..|       ++.+|...|++
T Consensus       299 ~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  359 (437)
T TIGR00792       299 LGYLIFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR  359 (437)
T ss_pred             HHHHHHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence            7666554421                   133444556677888888888999999888875       56789999999


Q ss_pred             HHHHHHHHHHhhHHHHHhhhhhc
Q 008623          500 LTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       500 ~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      ++...+|+.+++.+.|.+.+..+
T Consensus       360 ~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       360 TFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999987655

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.82  E-value=7.9e-20  Score=188.15  Aligned_cols=179  Identities=20%  Similarity=0.220  Sum_probs=156.9

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      .++.+..++.+..++..--|.+-..+ .-.++.+|.+++..|.+..++.+...++.|+.|+++||| .||+++..|..++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW  108 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW  108 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence            34455566666667766666665533 345678999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+..+++                       .++|++.+.|.+.|+|.+...|.++++++|.+|+++      |++.+
T Consensus       109 ~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~  159 (493)
T KOG1330|consen  109 TLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVL  159 (493)
T ss_pred             HHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHH
Confidence            9999999887                       579999999999999999999999999999999997      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhccc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      +++|++.++|.++|.++++.+.+..+ |||+|...+++.++..++.++..+
T Consensus       160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            99999999999999999999988877 999999999888777776665554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.82  E-value=4.9e-19  Score=192.21  Aligned_cols=174  Identities=11%  Similarity=0.134  Sum_probs=132.0

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      ++.++......++.....+...+.+| ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            34445555555555555555555444 56789999999999999999999999999999999998 99999999888888


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.++.+++                       .+.+.+++.|++.|++.+...+ ...+++|++|+++      |+++.+
T Consensus       113 ~~~~~~~~~-----------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g  162 (476)
T PLN00028        113 PAVFCMSLV-----------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANG  162 (476)
T ss_pred             HHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHH
Confidence            887777665                       3466778889999998886543 4557899999886      999999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhc----c-----ccCchhhhHHHHHHHHHHHHHHHh
Q 008623          189 WFYFSINIGALIASSVLVWIQ----D-----NEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~----~-----~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +.+...++|+.+++.+.+.+.    +     ..|||++|++.+++.++..+..++
T Consensus       163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            988877888887766655432    1     258999999888766555444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=1.3e-18  Score=182.47  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=136.6

Q ss_pred             HHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 008623           45 AYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLK  124 (559)
Q Consensus        45 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (559)
                      +.....+.+|.+.+ ++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++..+.++..++.+.+...       
T Consensus         6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~-------   76 (377)
T PRK11102          6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA-------   76 (377)
T ss_pred             HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-------
Confidence            34445677887764 6999999999999999999999999999999998 99999999999888888887765       


Q ss_pred             CCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhh
Q 008623          125 PVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSV  204 (559)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i  204 (559)
                                      .+.+.+.+.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+
T Consensus        77 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~  134 (377)
T PRK11102         77 ----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII  134 (377)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            346778889999999999988999999999999886      9999999999999999999999


Q ss_pred             hhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          205 LVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       205 ~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      ++++.+..||++.|++.++..++..+...
T Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        135 GGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999988999999887766655544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.82  E-value=4.1e-18  Score=179.66  Aligned_cols=339  Identities=10%  Similarity=0.047  Sum_probs=205.2

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchh----HHHHHHHHHHHHHHHHH
Q 008623           39 ECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRY----WTIAIFSIIYVIGMTFL  114 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr----~~~~~~~~~~~~~~~~~  114 (559)
                      .++...++..+.+++|.|++ ++|.|..+.|++.+.+.+...++.++.|.++||+ ||+    +.+.+...+.  . ...
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~-~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--A-VAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--H-HHH
Confidence            55555666777899999995 5899999999999999999999999999999999 984    3322222111  1 111


Q ss_pred             hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHH
Q 008623          115 TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI  194 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  194 (559)
                      ...                      .++.+.+++.|++.+++.+...|...++..++  .++      |++.++..+...
T Consensus        88 ~~~----------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~  137 (382)
T PRK11128         88 WFG----------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWG  137 (382)
T ss_pred             HHh----------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHH
Confidence            111                      14577888899999999888888877777765  222      788888888899


Q ss_pred             hHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchh
Q 008623          195 NIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLL  274 (559)
Q Consensus       195 ~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  274 (559)
                      ++|..+||.+++++.+++||+.+|++.++..++.++... ..++.   ++++++.++                       
T Consensus       138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~-----------------------  190 (382)
T PRK11128        138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQQ-----------------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccccc-----------------------
Confidence            999999999999999999999999877754444433222 22211   111000000                       


Q ss_pred             hhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008623          275 YETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSS  354 (559)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (559)
                            +          . +                   ....+     ++..+.|.+...+...+   +....+....+
T Consensus       191 ------~----------~-~-------------------~~~~~-----~~i~~~~~~~~~~~~~~---l~~~~~~~~~~  226 (382)
T PRK11128        191 ------E----------S-A-------------------GWPAW-----KALLKEPTVWRFLLCVS---LLQGSHAAYYG  226 (382)
T ss_pred             ------c----------c-c-------------------ccchH-----HHHHcChhHHHHHHHHH---HHHHHhHhHHH
Confidence                  0          0 0                   00000     01111122222211111   11111111112


Q ss_pred             hhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008623          355 LFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAV  434 (559)
Q Consensus       355 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~  434 (559)
                      ....   +.++ .|  ......+....++.+..++...+.++    +.||       .+.++.+..+.++.+++++.+..
T Consensus       227 ~~~~---~~~~-~g--~s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        227 FSAI---YWQA-AG--YSASTIGYLWSLGVVAEVLIFAFSNR----LFRR-------WSARDLLLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHH---HHHH-CC--CCHhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence            1111   1111 12  00001112222333333333333333    4444       45556677777777777665554


Q ss_pred             HHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHH-HHHHHHHHHhhHH
Q 008623          435 LELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSLL  513 (559)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l  513 (559)
                      .+                    +.+.+++..++.+++.+...+....+..+. |++.+++..++.+ ...++|..+|+.+
T Consensus       290 ~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i  348 (382)
T PRK11128        290 TT--------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL  348 (382)
T ss_pred             hh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            32                    445566677888999999899999998887 4555789999887 6677888999999


Q ss_pred             HHHhhhhh
Q 008623          514 VTIVTSIS  521 (559)
Q Consensus       514 ~~~v~~~~  521 (559)
                      .|.+.+..
T Consensus       349 ~G~l~~~~  356 (382)
T PRK11128        349 SGFLYQHL  356 (382)
T ss_pred             HHHHHHhc
Confidence            99998743

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.81  E-value=1.7e-18  Score=188.32  Aligned_cols=361  Identities=16%  Similarity=0.123  Sum_probs=236.1

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .+..+....+..+++.+....-++-++. ++.-|+...+.+.....+-..+..+++|.++||+ .|||+++.+-++..+.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence            3445556677777777766655555554 5567888999999999999999999999999999 9999999998876655


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      ...+.+...                  ....+++.+++..++.|++.+...|+..+++.|+.|+++      ..++.++.
T Consensus        89 ~~~L~~l~~------------------~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~  144 (524)
T PF05977_consen   89 ALLLAVLAF------------------FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALN  144 (524)
T ss_pred             HHHHHHHHH------------------hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHH
Confidence            555544321                  112457888888899999999999999999999999987      88999999


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCc
Q 008623          191 YFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPAD  270 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (559)
                      +...|+...+||.++|.+....|-.++|.+.++..++.+..+...+++.+.   +..+.++..+-+...++.        
T Consensus       145 s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~ry--------  213 (524)
T PF05977_consen  145 SISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLRY--------  213 (524)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHHH--------
Confidence            999999999999999999888898889998887766655544443332111   111111111111111000        


Q ss_pred             cchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008623          271 KSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS  350 (559)
Q Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  350 (559)
                                                                             +...+.+...+   ....+++....
T Consensus       214 -------------------------------------------------------v~~~~~l~~~l---~~~~~~~l~~~  235 (524)
T PF05977_consen  214 -------------------------------------------------------VRSSPPLRSVL---LRSFLFNLFAS  235 (524)
T ss_pred             -------------------------------------------------------HhcchHHHHHH---HHHHHHHHhhh
Confidence                                                                   01111111111   11111111111


Q ss_pred             ccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 008623          351 QMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMI  430 (559)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l  430 (559)
                      .....++..   ..+.++  +-...-+.+.+..+++.+++..+..+    +.+|       ++..+.+..+.++.+++.+
T Consensus       236 a~~aLlPl~---a~~~l~--~~a~~yGll~a~~gvGai~Gal~~~~----l~~~-------~~~~~lv~~~~~~~a~~~~  299 (524)
T PF05977_consen  236 AVWALLPLF---ARDVLG--GGASGYGLLLAAFGVGAILGALLLPR----LRRR-------LSSRRLVLLASLLFALALL  299 (524)
T ss_pred             HHHHhhhHH---HHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCcchhhHHHHHHHHHHHH
Confidence            111111111   111222  00001112223333444444433332    2222       3444566677777777776


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHh
Q 008623          431 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLS  510 (559)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg  510 (559)
                      .+++..                    +.+...+..++.|++.........+.+++.+|+++||+++|++++....+..+|
T Consensus       300 ~lal~~--------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lG  359 (524)
T PF05977_consen  300 LLALSP--------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLG  359 (524)
T ss_pred             HHhcch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHH
Confidence            666532                    455666778889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhhc
Q 008623          511 SLLVTIVTSIST  522 (559)
Q Consensus       511 ~~l~~~v~~~~~  522 (559)
                      +++.|.+.+..+
T Consensus       360 sll~G~la~~~g  371 (524)
T PF05977_consen  360 SLLWGFLADHFG  371 (524)
T ss_pred             HHHHHHHHHHhC
Confidence            999999987543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.81  E-value=7.2e-18  Score=180.94  Aligned_cols=171  Identities=13%  Similarity=0.099  Sum_probs=121.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHH-HHHHH-----HHHHhhhHHHHHhHhccchhHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNV-LDWSG-----TCYITPLIGAFLADAYLGRYWTIAIF  103 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~-~~~~~-----~~~~~~~~~G~laDr~~Grr~~~~~~  103 (559)
                      +....+++..++.......+. .....+.++++.++.+.+... +...+     ...++.++.|+++||+ ||||+++.+
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   92 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence            344444444555544444444 444467788998887754433 22222     2235788999999999 999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcc
Q 008623          104 SIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (559)
                      .++..++.+.++++.+...               ........+++.|++.|++.+...+....+++|++|+++      |
T Consensus        93 ~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r  151 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYAT---------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K  151 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHH---------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence            9999999888877621000               000001246889999999999999988999999999987      9


Q ss_pred             ccchhhhhHHHhHHHHHHhhhhhhh--------ccccCchhhhHHHHH
Q 008623          184 SSFFNWFYFSINIGALIASSVLVWI--------QDNEGWGWGFGIPAV  223 (559)
Q Consensus       184 ~~~~~~~~~~~~iG~~igp~i~~~l--------~~~~g~~~~f~i~~~  223 (559)
                      ++..+++....++|..+++.+++.+        .+..|||++|++.++
T Consensus       152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9999998888888888887776655        246799999987543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.7e-18  Score=183.90  Aligned_cols=382  Identities=13%  Similarity=0.119  Sum_probs=222.4

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHH
Q 008623           68 ASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFF  147 (559)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (559)
                      .+.+++.+.++.+++..++|+++||+ |||+.+....++..++.++..++...                    ....+++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~--------------------~~~e~li  120 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA--------------------PSFEMLI  120 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHH
Confidence            34567788999999999999999999 99999999999888888888776432                    3478899


Q ss_pred             HHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhh-hhc-cccCchhhhHHHHHHH
Q 008623          148 VALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV-WIQ-DNEGWGWGFGIPAVAM  225 (559)
Q Consensus       148 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~-~l~-~~~g~~~~f~i~~~~~  225 (559)
                      ++|++.|+..|......+.++.|..|++-      ||........+.++|..++..++. .+. ....|++.+....+..
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~  194 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA  194 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999997      999999999999999999965543 333 3345988888887766


Q ss_pred             HHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchhhh-cccccccccCCcccCCCCccch---hhh
Q 008623          226 AIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYE-TADAESNITGSRKLDHTKDFSF---FDK  301 (559)
Q Consensus       226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~---~~~  301 (559)
                      ++.++.+.+.                                ||+|.++.. ++|.|+|++..+.....++.+.   .+.
T Consensus       195 ~~~l~~l~~~--------------------------------PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~  242 (485)
T KOG0569|consen  195 LLQLALLPFL--------------------------------PESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEML  242 (485)
T ss_pred             HHHHHHHhcC--------------------------------CCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHH
Confidence            6666655443                                344444443 3444444433333322221110   111


Q ss_pred             hhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCcccccc
Q 008623          302 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSI  381 (559)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  381 (559)
                      .+.+.....+. ...++     .++.+.+...+. ....+.+.+...+.+......+.... -++.|   +........+
T Consensus       243 ~e~~~~~~~~~-~~~sl-----~~~~~~~~lR~~-~~i~~~v~~~qq~sGi~ai~~Yst~i-~~~aG---~~~~~a~~an  311 (485)
T KOG0569|consen  243 REIEEEELEKK-KQISL-----RQLLKNPTLRRP-LLIGIVVSFAQQFSGINAIFFYSTSI-FKTAG---FTPEEAQYAN  311 (485)
T ss_pred             HHHHHhccccc-cCCcH-----HHHhcCcchhHH-HHHHHHHHHHHHhcCcceeHHHHHHH-HHHcC---CCHHHHHHHH
Confidence            11111111100 11111     111111111111 11111222222222222222211110 11112   1111111111


Q ss_pred             -ccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHH
Q 008623          382 -FDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW  460 (559)
Q Consensus       382 -~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (559)
                       ......++...+    ...+.+|.+||       ..+.+++.++.+..+.+........ ..+         .-++...
T Consensus       312 ~~~g~v~~~~t~~----~~~lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~-~~~---------~~~~y~~  370 (485)
T KOG0569|consen  312 LGIGIVNLLSTLV----SPFLIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSN-SFG---------SWLSYLC  370 (485)
T ss_pred             HHHHHHHHHHHHH----HHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---------hHHHHHH
Confidence             111111222222    22355666655       4666777777666665554432100 000         0011111


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCCCchhh
Q 008623          461 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLH  540 (559)
Q Consensus       461 ~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~  540 (559)
                      ++...........+..|..+-+.+|.+|++.|..++++..+.+.+.+.+.......+.+..+               .  
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------------~--  433 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------------P--  433 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------c--
Confidence            23333334445556789999999999999999999999999999999888888888766433               1  


Q ss_pred             HHhhhhh----------heeeeCCCCC
Q 008623          541 YFFWLLT----------WYTYKRPVGS  557 (559)
Q Consensus       541 ~~f~~~~----------~~~~~~~~~~  557 (559)
                      ++|..++          |.+-+|+|||
T Consensus       434 ~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  434 YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            2333333          8888999987

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=2.8e-18  Score=178.76  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             hhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 008623           49 MSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCH  128 (559)
Q Consensus        49 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (559)
                      +.+.+| .+++++|.+.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.. ..           
T Consensus        19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-----------   84 (355)
T TIGR00896        19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-----------   84 (355)
T ss_pred             CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence            344555 45679999999999999999999999999999999999 99999999988777766555 32           


Q ss_pred             CCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhh
Q 008623          129 GPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI  208 (559)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l  208 (559)
                                  .+.+.+++.|++.|++.+...+....++.|.+|+ +      |+++.++++.+.++|..+++.+++.+
T Consensus        85 ------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        85 ------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        3466778899999999998888888888888864 4      89999999999999999999998888


Q ss_pred             ccccC--chhhhHHHHHHHH
Q 008623          209 QDNEG--WGWGFGIPAVAMA  226 (559)
Q Consensus       209 ~~~~g--~~~~f~i~~~~~~  226 (559)
                      .+..+  |++.|.+.++..+
T Consensus       146 ~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       146 AQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHhhhhhHHHHHHHHHHHHH
Confidence            76643  8888876655433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=99.81  E-value=3.9e-18  Score=183.21  Aligned_cols=150  Identities=15%  Similarity=0.105  Sum_probs=120.5

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      +..+....+...+........+|. +++++|.++.+.++..+.+.++..++.++.|++.||+ ||||++..+.++++++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~  105 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGA  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            444445555555555555555665 4889999999999999999999999999999999999 99999999999999988


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +.+.....                    ..+.+.+++.|+++|+|.+...+...+++.|..|+++      |...++..+
T Consensus       106 ~l~~~~~~--------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~  159 (438)
T PRK10133        106 ALFWPAAE--------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQ  159 (438)
T ss_pred             HHHHHHHh--------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHH
Confidence            77532210                    1457888999999999999999999999998766554      556788888


Q ss_pred             HHHhHHHHHHhhhhhhhc
Q 008623          192 FSINIGALIASSVLVWIQ  209 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~  209 (559)
                      ....+|..+||.+++.+.
T Consensus       160 ~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        160 TFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999998876543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.80  E-value=2.1e-18  Score=206.48  Aligned_cols=155  Identities=10%  Similarity=0.034  Sum_probs=124.9

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCCh--hhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSS--STASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      +.+...++..++.++...+....+..++.+.++.+.  ...+++.+++.+...++.+++|+++||+ |||++++.+.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            445566667777766666666666666666666654  3468888999999999999999999999 9999999888765


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      ++..++..++..                    ..+.+.+++.|++.|++.+...+...++++|++|+++      |++++
T Consensus        88 ~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~  141 (1146)
T PRK08633         88 VGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN  141 (1146)
T ss_pred             HHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence            555554443311                    1347889999999999999999999999999999987      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDN  211 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~  211 (559)
                      ++...+.++|.++||.+++++.+.
T Consensus       142 ~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        142 GLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998765

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.80  E-value=1.6e-18  Score=207.39  Aligned_cols=338  Identities=12%  Similarity=0.024  Sum_probs=194.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH--HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchh
Q 008623           66 STASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI--IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQS  143 (559)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (559)
                      ...++..+++.+...++.+++|+++||+ |||+++.....  +...........                      ..+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~----------------------~~s~  108 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH----------------------LNSV  108 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhH
Confidence            3467778889999999999999999999 99998644222  111111111111                      0357


Q ss_pred             HHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHH
Q 008623          144 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV  223 (559)
Q Consensus       144 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~  223 (559)
                      +.++++|+++|++.+...|...+++.|++|+++      |++++++.+++.++|.++||+++|++.+..+|++.|...++
T Consensus       109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~  182 (1140)
T PRK06814        109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG  182 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            889999999999999999999999999999987      99999999999999999999999999999999998854444


Q ss_pred             HHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhh
Q 008623          224 AMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA  303 (559)
Q Consensus       224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (559)
                      ..++++++.+...+ .+..++..+......+-                                             ..+
T Consensus       183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------------------------------------~~~  216 (1140)
T PRK06814        183 IAVLGWLASLFIPK-TGNAAPDLKIDRNIIRS---------------------------------------------TIT  216 (1140)
T ss_pred             HHHHHHHHHhhCCC-CCCCCCCCeeccchHHH---------------------------------------------HHH
Confidence            44444333333222 11111000000000000                                             000


Q ss_pred             hhhccccccccCCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccc
Q 008623          304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVR-LLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIF  382 (559)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  382 (559)
                                   .+     +.+.+.+.+.. .+...+...++.....+++.+..       ..++  .-....+.+.+.
T Consensus       217 -------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~g--~~~~~~g~~~~~  269 (1140)
T PRK06814        217 -------------LL-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAK-------ETLG--GDENVATLFLAV  269 (1140)
T ss_pred             -------------HH-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHcC--CchHHHHHHHHH
Confidence                         00     00011111211 11111222222222222222221       1122  000112223344


Q ss_pred             cceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCC--CccchhH
Q 008623          383 DTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHN-YYDLP--EMPMSIM  459 (559)
Q Consensus       383 ~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~  459 (559)
                      ..++.+++..+.++    +.++..       ..+.+..+.++.++..+.+.+....   ....+. +..-.  ....+.+
T Consensus       270 ~~~g~~ig~~~~g~----l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        270 FSVGVAVGSFLASK----LSEGRI-------TLLYVPIGALLMGLFGLDLAFASSS---VPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             HHHHHHHHHHHHHH----HhCCce-------eeeeehHHHHHHHHHHHHHHhcccc---cccccccccchhhhhcccccH
Confidence            45555555655555    222211       1123333444443333333221000   000000 00000  0002445


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          460 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       460 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      .+.+..++.+++.++..+...+++.+.+|++.+|+++|+.++.++++..+++++.+.+..
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888999999999999999999999999999999999999999999999998863

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.80  E-value=8.5e-19  Score=188.34  Aligned_cols=155  Identities=15%  Similarity=0.107  Sum_probs=125.4

Q ss_pred             HHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC
Q 008623           54 VRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGE  133 (559)
Q Consensus        54 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (559)
                      ..++++ .|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.++..++.+......   .           
T Consensus        50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---~-----------  113 (438)
T TIGR00712        50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVP---W-----------  113 (438)
T ss_pred             hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccc---c-----------
Confidence            346665 599999999999999999999999999999999 999999999888888777665431   1           


Q ss_pred             cccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhc-ccc
Q 008623          134 ETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-DNE  212 (559)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~-~~~  212 (559)
                           ...+...+.+.|++.|++.+...+....++.|++|+++      |++++++++.+.++|+.++|.+.+.+. +..
T Consensus       114 -----~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       114 -----ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             -----ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence                 01245667788999999999888888899999999887      999999999999999999988777544 456


Q ss_pred             CchhhhHHHHHHHHHHHHHHHhc
Q 008623          213 GWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       213 g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      +||.+|++.++..++..+..++.
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Confidence            89999998877665554443333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.80  E-value=1.4e-17  Score=175.85  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHh
Q 008623           36 LGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLT  115 (559)
Q Consensus        36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  115 (559)
                      ....+....+.....+.+|.+ .+++|.+..+.++..+.+.+...++.++.|+++||+ |||+.++.+.++..++.+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHH
Confidence            334445555555555666655 567999999999999999999999999999999998 999999999988888887776


Q ss_pred             hhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHh
Q 008623          116 VTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSIN  195 (559)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  195 (559)
                      ..                       .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++.+...+
T Consensus        87 ~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~  137 (392)
T PRK10473         87 LA-----------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITC  137 (392)
T ss_pred             Hh-----------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence            54                       346677889999999999888888999999999886      9999999999999


Q ss_pred             HHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          196 IGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       196 iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      +|..++|.+++.+.+..||++.|++.++..++..+..
T Consensus       138 i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        138 IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888899999988876655554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.79  E-value=3.8e-17  Score=174.56  Aligned_cols=354  Identities=14%  Similarity=0.061  Sum_probs=199.7

Q ss_pred             HhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccch-hHHHHHHHHHHHHHHHH
Q 008623           35 ILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGR-YWTIAIFSIIYVIGMTF  113 (559)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~~~~~~  113 (559)
                      +.+..++...++-...+.++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++...
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            44556666666666779999999999999999999999999999999999999999998 75 76777777766666655


Q ss_pred             HhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccc--------cCCCCcchHhhhcccc
Q 008623          114 LTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGA--------DQFDDADEAEKKHKSS  185 (559)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~--------~~~~~~~~~~~~~r~~  185 (559)
                      ..+.                       .+.+.+++.+++.+++.+...+...++..        |.....      .|.+
T Consensus        86 ~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~------~~~r  136 (418)
T TIGR00889        86 AAQV-----------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF------PPIR  136 (418)
T ss_pred             HHHh-----------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC------CCee
Confidence            5544                       34666777788888876665555444322        212222      2455


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCC-CChhHHHHHHHHHHHhhcc
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPG-GSPLTRICQVVAASIRKHK  264 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  264 (559)
                      .++      .+|..+||.+++.+.....|. +|++.++..++..+..+. .++.+..+++ +.+.++..           
T Consensus       137 ~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~-----------  197 (418)
T TIGR00889       137 VMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKVML-----------  197 (418)
T ss_pred             eeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHHHh-----------
Confidence            544      478889998888774332344 455555544444433222 2221100000 00000000           


Q ss_pred             ccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHH-HHHHHHHH
Q 008623          265 VELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRL-LPIWATGI  343 (559)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~  343 (559)
                                                       ..+.                      .+..+.+++... +..++...
T Consensus       198 ---------------------------------~~~~----------------------~~~~k~~~~~~~~~~~~~~~~  222 (418)
T TIGR00889       198 ---------------------------------GLDA----------------------FILFKNKRMAIFFFFSMLLGA  222 (418)
T ss_pred             ---------------------------------hhhH----------------------HHHhcCCCeeeHHHHHHHHHh
Confidence                                             0000                      000000111111 11111111


Q ss_pred             HHHHHhcccchhhhhccccccCCCCCcccee-CccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008623          344 IFSAVYSQMSSLFVLQGERMDTHVGNSSFKI-PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGL  422 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~  422 (559)
                      .....+...+......  ..+.... +++.. ..+....+..+..++...+.++    +.+|+       ++++.+..+.
T Consensus       223 ~~~~~~~~~~~~~~~~--g~~~~~~-~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~-------g~r~~l~~~~  288 (418)
T TIGR00889       223 PLQITNIFGNGFLHEF--GRNPEFA-DSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRF-------GIKKVMLLSL  288 (418)
T ss_pred             HHHHHHHhHHHHHHHh--ccccccc-chhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHH
Confidence            1111111111111110  0000000 00000 0112222333333444444443    45553       3345677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHH-H
Q 008623          423 FISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-T  501 (559)
Q Consensus       423 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~-~  501 (559)
                      ++.++++..+.....                .....+.+.+..++.+++++...+....++.+.+|++.||+++|+.+ +
T Consensus       289 ~~~~v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~  352 (418)
T TIGR00889       289 VAWALRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLM  352 (418)
T ss_pred             HHHHHHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            777776655544210                00123345566788999999989999999999999999999999997 6


Q ss_pred             HHHHHHHHhhHHHHHhhhhhc
Q 008623          502 TVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       502 ~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      ..++|+.+||.+.|.+.+..+
T Consensus       353 ~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       353 CNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHhhHHHHHHHHHHHHHHHhc
Confidence            789999999999999987544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=3.2e-18  Score=174.86  Aligned_cols=172  Identities=16%  Similarity=0.124  Sum_probs=151.5

Q ss_pred             hhHhhHHHHHHHHHHhhh---hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMS---TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +-++++.++.-.++|-..   ....+++.++.++|.+|.|.+.+.+++.+.++..+.|.++||. +.|+.+-+++++.++
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            556677777778888763   4456788889999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ..++++++                       .+.+.+.+..++.|..+|.-.|....+++.+++++|      ||+..++
T Consensus       107 ~nil~Gfs-----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~si  157 (448)
T COG2271         107 VNILFGFS-----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSI  157 (448)
T ss_pred             HHHHHhhh-----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEE
Confidence            99999887                       457778888889999999999999999999999998      9999999


Q ss_pred             hhHHHhHHHHHHhhhh--hhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          190 FYFSINIGALIASSVL--VWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~--~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      .+.+-|+|+.+.|++.  +++..+.+||..|++++++.++..+..++
T Consensus       158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999  89998889999999999766544444433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.79  E-value=2.9e-17  Score=180.09  Aligned_cols=360  Identities=15%  Similarity=0.152  Sum_probs=210.7

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHH
Q 008623           67 TASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATF  146 (559)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (559)
                      +.+++.+...+++.++.++.|+++|++ |||++++++.+++.++.+.++++                       .+..++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-----------------------~~~~~l  145 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-----------------------PSWYQL  145 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHH
Confidence            458999999999999999999999999 99999999999999999999987                       468899


Q ss_pred             HHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc--cCchhhhHHHHHH
Q 008623          147 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--EGWGWGFGIPAVA  224 (559)
Q Consensus       147 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~--~g~~~~f~i~~~~  224 (559)
                      .++|++.|+|.|+....++.+++|..|++.      |+...+..+....+|..++..+ ++..++  .+||..+.+..+.
T Consensus       146 ~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~~~~i~  218 (513)
T KOG0254|consen  146 IVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLGLALIP  218 (513)
T ss_pred             HHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHHHHHHH
Confidence            999999999999999999999999999987      9999999999999999999654 444443  4899888877766


Q ss_pred             HHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCC-Cccchhhhhh
Q 008623          225 MAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHT-KDFSFFDKAA  303 (559)
Q Consensus       225 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  303 (559)
                      .++..+.+++..                                ++|+++.+.++.+++++...++... ++....+...
T Consensus       219 ~~~~~~~~~~~p--------------------------------esp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~  266 (513)
T KOG0254|consen  219 AVILALGMLFLP--------------------------------ESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELEL  266 (513)
T ss_pred             HHHHHHHHHhCC--------------------------------CChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHH
Confidence            665555533322                                1222222222222222111111110 0000000000


Q ss_pred             hh--hcccc-ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccc
Q 008623          304 VE--IQSDN-IKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS  380 (559)
Q Consensus       304 ~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  380 (559)
                      ..  ..... ..+....|+++..  ....|+....+.+..++..........|+....+      ..|   +..+.....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~------~~g---~~~~~~~~~  335 (513)
T KOG0254|consen  267 LKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK------SAG---LKSDTFLAS  335 (513)
T ss_pred             HHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH------hcC---CCCchHHHH
Confidence            00  00000 0000001211111  0122222222223233322222222222222211      112   111111111


Q ss_pred             cccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHH
Q 008623          381 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW  460 (559)
Q Consensus       381 ~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (559)
                      .+..+..++...+.    .-+.+|++||       ..+..|...+.++.++++..........+       .........
T Consensus       336 ~~~~~v~~~~t~~~----~~lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  397 (513)
T KOG0254|consen  336 IILGVVNFLGTLVA----TYLVDRFGRR-------KLLLFGAAGMSICLVILAVVGVFALYYPN-------SSKGAGWLA  397 (513)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHhccH-------HHHHHhHHHHHHHHHHHHHHHHHhccCCC-------cccchhHHH
Confidence            11111111111111    2255555544       47778888888888877765432100000       011123333


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 008623          461 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT  518 (559)
Q Consensus       461 ~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~  518 (559)
                      ++...++......+..|..+.+..|..|.+.|+.+.++....+.+.+.+-........
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666667778889999999999999999999999999998877765555544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.78  E-value=1.1e-17  Score=175.23  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=112.2

Q ss_pred             HHHHHhhhcC--CChhhhHHHHHH--H---HHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 008623           53 LVRYFKHQLD--QSSSTASKNVLD--W---SGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP  125 (559)
Q Consensus        53 l~~yl~~~lg--~s~~~~~~~~~~--~---~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (559)
                      ...++.++..  .++.+.+.+.+.  +   .+...++.++.|+++||+ ||||+++.+.++..++.+.+.++.+.+.   
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~---   90 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT---   90 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh---
Confidence            4445555543  334444444432  2   233346789999999998 9999999999998888888776521110   


Q ss_pred             CCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          126 VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                                  ........+++.|++.|++.+...+...+++.|.+|+++      |++..++.+.+..+|..+++.+.
T Consensus        91 ------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        91 ------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             ------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHH
Confidence                        000112357888999999999999999999999999887      99999999999999999999877


Q ss_pred             hhhc--------cccCchhhhHHHHHHHHHHH
Q 008623          206 VWIQ--------DNEGWGWGFGIPAVAMAIAV  229 (559)
Q Consensus       206 ~~l~--------~~~g~~~~f~i~~~~~~i~~  229 (559)
                      ..+.        +..+|+++|.+.++..+++.
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            6543        35689999987766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.78  E-value=2e-17  Score=172.33  Aligned_cols=155  Identities=14%  Similarity=0.156  Sum_probs=117.6

Q ss_pred             hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc----cchhHHH-HHHHHHHHHHHHHHhhhhccCCCCC
Q 008623           51 TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY----LGRYWTI-AIFSIIYVIGMTFLTVTASVSGLKP  125 (559)
Q Consensus        51 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  125 (559)
                      ..+|.++ +++|+|.++.++.... .+...+ .++.|+++||+    +||||.+ +.+.++.++.+..+.+.   +    
T Consensus         9 ~~~~~~~-~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~----   78 (356)
T TIGR00901         9 NTLPYWL-RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---V----   78 (356)
T ss_pred             hHHHHHH-HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---C----
Confidence            4455555 5789999999988655 333344 89999999997    4899975 45566666665555443   1    


Q ss_pred             CCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          126 VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                                   ...+.+.+....++.+++.+...+...+++.|++|+++      |+++.++...+.++|.++++.++
T Consensus        79 -------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~  139 (356)
T TIGR00901        79 -------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLA  139 (356)
T ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHH
Confidence                         11345556666667788888888999999999998876      99999999999999999999999


Q ss_pred             hhhccccC--------chhhhHHHHHHHHHHHHHHHh
Q 008623          206 VWIQDNEG--------WGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       206 ~~l~~~~g--------~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +++.+..|        ||.+|++.++..++.++..++
T Consensus       140 ~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       140 LVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            99988888        999999888766665554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.78  E-value=3.6e-17  Score=174.22  Aligned_cols=170  Identities=13%  Similarity=0.088  Sum_probs=135.2

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      ++.++...+...+......+.+ ..+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||++++.+.++.+++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            3444444454444443333445 456889999999999999999999999999999999999 99999999999988888


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      ..+..+.                    ...+.+.+++.|++.|+|.+...+...+++.+..|+++      |++..++.+
T Consensus        83 ~l~~~~~--------------------~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~  136 (410)
T TIGR00885        83 FLFWPAA--------------------EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQ  136 (410)
T ss_pred             HHHHHHH--------------------hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHH
Confidence            7764431                    11357788899999999999999999999999988876      888899999


Q ss_pred             HHHhHHHHHHhhhhhhhccc--------------------------cCchhhhHHHHHHHHHHH
Q 008623          192 FSINIGALIASSVLVWIQDN--------------------------EGWGWGFGIPAVAMAIAV  229 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~--------------------------~g~~~~f~i~~~~~~i~~  229 (559)
                      ...++|..++|.+++.+...                          .+||++|.+.++..++..
T Consensus       137 ~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       137 SFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988876421                          359999987776554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.2e-17  Score=170.87  Aligned_cols=375  Identities=13%  Similarity=0.033  Sum_probs=243.7

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      +.++|+++...+. +...+..+.+...+..++.+++|+|+.|.+++.+...+...+..++-|.+.||+ |.|++..++.+
T Consensus        10 ~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            3456666655444 444455555667777888899999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +..+-.+.++++..                    .++.+.+++..++.|++.+- +.+..+++++++|+++      +|.
T Consensus        88 l~~IP~~~~~~a~~--------------------~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~  140 (417)
T COG2223          88 LLLIPCLGLAFAVT--------------------YPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGL  140 (417)
T ss_pred             HHHHHHHHHHHHcc--------------------CCchHHHHHHHHHHhcccce-ehcccccccccCChhh------hhH
Confidence            98888888888732                    23357788888888887665 4677789999999997      899


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccC---chhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhh
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEG---WGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRK  262 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g---~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (559)
                      +++++. ..|+|..+...++.++....|   |+.+..+..+.+++..+..++..+.....++..++...           
T Consensus       141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-----------  208 (417)
T COG2223         141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-----------  208 (417)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----------
Confidence            999999 899999999999998888888   99888888888888777776655432211111110000           


Q ss_pred             ccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHH
Q 008623          263 HKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATG  342 (559)
Q Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  342 (559)
                                                             .                   ..+.+...++...+..+.+.+
T Consensus       209 ---------------------------------------~-------------------~~~~v~~~~~~W~lsllY~~t  230 (417)
T COG2223         209 ---------------------------------------A-------------------QLKAVFSNKDTWLLSLLYFAT  230 (417)
T ss_pred             ---------------------------------------h-------------------HHHHHhcCcchHHHHHHHHHH
Confidence                                                   0                   001112122222222233332


Q ss_pred             HHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008623          343 IIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGL  422 (559)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~  422 (559)
                      ...++-+.   ..+   +++...+++  -.....+.+....++...+..|+.++        +.||   ++..|.+.+.+
T Consensus       231 FG~Fvgfs---~~l---~~~~~~~fg--~~~~~Ag~~a~~f~~~g~l~Rp~GG~--------LsDR---~Gg~rv~~~~f  291 (417)
T COG2223         231 FGGFVGFS---AYL---PMYLVTQFG--LSPVTAGLIAFLFPLIGALARPLGGW--------LSDR---IGGRRVTLAVF  291 (417)
T ss_pred             HHHHHHHH---HHH---HHHHHHhcC--CChhhHHHHHHHHHHHHHHHHhccch--------hhhh---ccchhHHHHHH
Confidence            22222222   211   122233333  01122223333444444444555544        4444   55556777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHH
Q 008623          423 FISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT  502 (559)
Q Consensus       423 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~  502 (559)
                      ..++++..+.......             .....+.+......+..++..++-+-..+-++..+.|+ +-|.+.|+....
T Consensus       292 ~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~  357 (417)
T COG2223         292 VGMALAAALLSLFLTG-------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAI  357 (417)
T ss_pred             HHHHHHHHHHHccccc-------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHh
Confidence            8887777776653210             01112334444444555555555555556666666654 689999999999


Q ss_pred             HHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCCCchhhHHhhhhh
Q 008623          503 VALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLT  547 (559)
Q Consensus       503 ~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~  547 (559)
                      +++|+..-|...+...+.++               .+..+||++.
T Consensus       358 G~lGGf~lp~~~g~~~~~tg---------------~~~~~f~~~~  387 (417)
T COG2223         358 GGLGGFFLPLAFGVSLDLTG---------------SYTGAFMLLL  387 (417)
T ss_pred             ccccccchhHHHHHHHHhcc---------------cHHHHHHHHH
Confidence            99999999999998876543               3566777776

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.75  E-value=2.9e-16  Score=171.11  Aligned_cols=178  Identities=13%  Similarity=0.166  Sum_probs=137.7

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc----cchhHH-HHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY----LGRYWT-IAI  102 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~-~~~  102 (559)
                      ++|+.+.++...+...+..+.....+|.|++ +.|.+..+.+...... .. +++.+++|.++||+    +||||. +..
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            3444666777778888888888889999986 4589988888863222 22 36899999999995    288886 546


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc
Q 008623          103 FSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (559)
                      +.+..+++...+++..  |                  ..+.+.+.+.+++.+++.+...+...++..|++|+++      
T Consensus        87 ~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence            6666666666665541  1                  2457778888889999999999999999999999886      


Q ss_pred             cccchhhhhHHHhHHHHHHhhhhhhhcc-ccCchhhhHHHHHHHHHHHHHHHh
Q 008623          183 KSSFFNWFYFSINIGALIASSVLVWIQD-NEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       183 r~~~~~~~~~~~~iG~~igp~i~~~l~~-~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      |+++.++...+..+|..+++.+++++.+ ..|||.+|++.++..++.++..++
T Consensus       141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988 569999999888766655544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.74  E-value=5.9e-16  Score=166.08  Aligned_cols=414  Identities=11%  Similarity=0.061  Sum_probs=240.2

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHh----ccchhHHHHHH-HHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADA----YLGRYWTIAIF-SII  106 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~-~~~  106 (559)
                      +..+....+..++++-...++++.|+ +++|.+....+.+.....+...+.+|+.|+++||    + ||||.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            56677778888888888888898887 5799999999999999999999999999999995    7 999998875 555


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      .+++.++++++..+....   ++ +.++ . ......+...++..+..++.....+...++++|.+|+++    ++++.+
T Consensus        84 ~~~~l~ll~~~~~~~~~~---~~-~~~~-~-~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a  153 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLF---GD-NLDK-K-TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIA  153 (477)
T ss_pred             HHHHHHHHHhCchhhhhc---cc-cccc-c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHH
Confidence            556666665542111000   00 0000 0 000011233444445556777777788899999999886    123578


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhh--cccc-------------CchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHH
Q 008623          187 FNWFYFSINIGALIASSVLVWI--QDNE-------------GWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTR  251 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l--~~~~-------------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  251 (559)
                      .++.+...++|+.+|+.+++..  .+..             +.+..|++.+++.+++.+...+..|+.+..++++.+..+
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~  233 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE  233 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh
Confidence            9999999999999999988754  2211             567889998887777777666655553221111100000


Q ss_pred             HHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHH-HH
Q 008623          252 ICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEE-LK  330 (559)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~  330 (559)
                                     .          ++.+          ..+.                   ...+++.. +...+ -|
T Consensus       234 ---------------~----------~~~~----------~~~~-------------------~~~~~~i~-~~~~~mP~  258 (477)
T TIGR01301       234 ---------------A----------APPS----------KHGE-------------------EAFFGELF-GAFKYLPR  258 (477)
T ss_pred             ---------------c----------cccc----------ccch-------------------hhhHHHHH-HHHHHCCH
Confidence                           0          0000          0000                   00000000 00111 12


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCC
Q 008623          331 AIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN  410 (559)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~  410 (559)
                      .+.+++...++.-+-|..+..+.+.+..+..+-...-..+.++-.. -......+...+...+++.++.++.+|++++| 
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gv-r~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-  336 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGV-RAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence            2334454555555556665555555443321110000000000000 00111112222222344555555677755331 


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhc-CCCCCCCccch-hHHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 008623          411 GLTQLQRMGIGLFISILSMIAAAVLELIRLR--MVREH-NYYDLPEMPMS-IMWQVPQYFLIGCAEVFTFIGQLEFFYEQ  486 (559)
Q Consensus       411 ~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~p~~~~~~~~~  486 (559)
                           ..-.++.++.+++++...++.....+  ..+.. .+.  .+ +.. .+...+.+.+.|+.........++++++.
T Consensus       337 -----~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       337 -----RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL--PP-PTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc--Cc-chhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence                 23367777888888777765421000  00000 000  00 111 25566777889999999999999999999


Q ss_pred             CCh--hhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          487 APD--AMRSLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       487 ~P~--~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      .|+  +..|..+|+.|++-.+.+.+.++..|.+.+..+
T Consensus       409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g  446 (477)
T TIGR01301       409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG  446 (477)
T ss_pred             ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            995  455999999999999999999998888665544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.73  E-value=2.8e-15  Score=159.17  Aligned_cols=164  Identities=16%  Similarity=0.181  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc----cchhH-HHHHHHHHHHHHHH
Q 008623           38 NECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY----LGRYW-TIAIFSIIYVIGMT  112 (559)
Q Consensus        38 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~-~~~~~~~~~~~~~~  112 (559)
                      ..+.....+.-...-+|.|+++ .|+|.++.|++......  .+..+++|+++||+    +|||| .++.+.++.+++..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            3445555555566789999975 59999999999766654  68999999999997    26665 67777777776666


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      .+.+.   +                 ...+.+.+++..++.+++.+...+...+++.|++|+++      |+++.++...
T Consensus        84 ~l~~~---~-----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~  137 (402)
T PRK11902         84 AMAFC---P-----------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVL  137 (402)
T ss_pred             HHHhc---C-----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHH
Confidence            66544   1                 12346666666667788888888999999999999887      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhccc-cCchhhhHHHHHHHHHHHH
Q 008623          193 SINIGALIASSVLVWIQDN-EGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~-~g~~~~f~i~~~~~~i~~~  230 (559)
                      +.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus       138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999988875 5999999988776555444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=7.9e-16  Score=154.78  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             ChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchh
Q 008623           64 SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQS  143 (559)
Q Consensus        64 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (559)
                      +..-+|.+-+.|.+...+..+.+|.++||+ |||+++..+.+..++.....+.+                       .++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-----------------------~~F  121 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-----------------------RNF  121 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence            345578888999999999999999999999 99999999999888877777765                       456


Q ss_pred             HHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc
Q 008623          144 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       144 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~  210 (559)
                      ..+.++|++.|+..|-. +...++++|.+++++      |+.+++....+..+|.++||+++|++..
T Consensus       122 ~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            66777799999999876 667899999999987      9999999999999999999999999987

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.70  E-value=4.7e-20  Score=198.40  Aligned_cols=359  Identities=17%  Similarity=0.166  Sum_probs=207.1

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHH
Q 008623           67 TASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATF  146 (559)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (559)
                      ..++..+...++..++.+++|+++||+ |||++++.+.++.+++.++..++.                    ...+.+.+
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~  105 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAP--------------------SYNNFWML  105 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccc--------------------cccccccc
Confidence            467888999999999999999999999 999999999999999988887761                    11257889


Q ss_pred             HHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc---cCchhhhHHHHH
Q 008623          147 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN---EGWGWGFGIPAV  223 (559)
Q Consensus       147 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~---~g~~~~f~i~~~  223 (559)
                      .++|++.|++.|+..+....++.|..|++.      |+...++.+....+|.+++..+.-.+.+.   .+||..+.+.++
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~  179 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI  179 (451)
T ss_pred             cccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999987      99999999999999998888765444333   349998887776


Q ss_pred             HHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhh
Q 008623          224 AMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA  303 (559)
Q Consensus       224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (559)
                      ..++.++...+                                .||+|+++...++.|++++..+++...+..+ .+..+
T Consensus       180 ~~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-~~~~~  226 (451)
T PF00083_consen  180 PSLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIED-EEIEE  226 (451)
T ss_pred             ccccccccccc--------------------------------cccccceeccccccccccccccccccccccc-ccccc
Confidence            55443332211                                4566777777776666666655543221100 00000


Q ss_pred             hhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCcc-ccccc
Q 008623          304 VEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA-SLSIF  382 (559)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~  382 (559)
                      ...+.....+....|++....+. .+++++..+.+......     ........+.+ ..-.+.+     .+.. ....+
T Consensus       227 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~-~i~~~~~-----~~~~~~~~~~  294 (451)
T PF00083_consen  227 IKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQF-----SGINFIFYYSP-SIFENAG-----ISNSFLATLI  294 (451)
T ss_pred             cccccccccccceeeeecccccc-ccccccccccccccccc-----ccccccccccc-ccccccc-----cccccccccc
Confidence            00000000000112222221111 12222222111111111     11111111111 1111112     1111 11111


Q ss_pred             cceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCCccchhHHH
Q 008623          383 DTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAA-VLELIRLRMVREHNYYDLPEMPMSIMWQ  461 (559)
Q Consensus       383 ~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (559)
                      ..+..++...+..    .+.+|++||       +.+..+.++++++.+.++ .....      .+     .+...+...+
T Consensus       295 ~~~~~~~~~~~~~----~~~~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~i  352 (451)
T PF00083_consen  295 LGLVNFLGTLLAI----FLIDRFGRR-------KLLIIGLLLMAICSLILGIIFFLG------VS-----SSSWWSILSI  352 (451)
T ss_pred             ccccccccccccc----ccccccccc-------cccccccccccccccccccccccc------cc-----cccccccccc
Confidence            1111111222211    355565554       355566666666665554 11100      00     0000122222


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          462 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       462 ~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      +...+..........+..+.+..|..|++.|+++.|+....+.+++.+++.+...+.+
T Consensus       353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~  410 (451)
T PF00083_consen  353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN  410 (451)
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2222222333445678888899999999999999999999999999888888777654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09669 putative symporter YagG; Provisional

Probab=99.70  E-value=1.5e-15  Score=163.42  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHh----ccchhHH-HHHHHHHHHHHH
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADA----YLGRYWT-IAIFSIIYVIGM  111 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~-~~~~~~~~~~~~  111 (559)
                      +..+..+..+..+..+++.|+.+++|++..++|.+..+..+...+..|+.|+++||    + ||||- ++.+.+..+++.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence            34455666666777889999999999999999999999999999999999999999    5 87555 445666666665


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +++...   |..              ......+.+++...+.+.+.........++.+|+.++.+     +|.+..++..
T Consensus        95 ~l~f~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~  152 (444)
T PRK09669         95 LLTFYT---PDF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRF  152 (444)
T ss_pred             HHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHH
Confidence            544333   220              111234445555556666666777778899999986543     3888888888


Q ss_pred             HHHhHHHHHHhhhhhhhcc-------ccCchhhhHHHHHHHHHHHHHHHh
Q 008623          192 FSINIGALIASSVLVWIQD-------NEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~-------~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ...++|+.+++.+...+..       ..||+..+.+.+++.++..+..++
T Consensus       153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            8888888887765433322       235776666666554444433333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.69  E-value=6.5e-15  Score=155.59  Aligned_cols=177  Identities=9%  Similarity=-0.094  Sum_probs=121.1

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHH--HHHHHHHHHHhhhHH-HHHhHhccchhHHHHHHHHHH-
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKN--VLDWSGTCYITPLIG-AFLADAYLGRYWTIAIFSIIY-  107 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~~~~~~~~~-  107 (559)
                      ...+....+.+.+.+....+.+|.|++ +.|.|..+.|..  ...+.+...+..|+. ++..||+ ||||..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            344556677777887888899999996 569999999997  466677787788777 5579998 9999976665332 


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      ......+...  .+.                 ......++....+.++..+...+...++..|..++++      ++.+.
T Consensus        81 ~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~  135 (390)
T TIGR02718        81 SACLASLALV--GPD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGN  135 (390)
T ss_pred             HHHHHHHHcC--Ccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHH
Confidence            2222222211  011                 1112233333444556666666666667777776664      67777


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      +....+..+|..+|+.+.+++.+..||+.+|++.++..++..+..++.
T Consensus       136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            777778889999999888899999999999998887666555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.69  E-value=4.4e-15  Score=161.23  Aligned_cols=366  Identities=10%  Similarity=0.043  Sum_probs=209.0

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhH----hccchhH-HHHHHHHHHHHHH
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLAD----AYLGRYW-TIAIFSIIYVIGM  111 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~-~~~~~~~~~~~~~  111 (559)
                      +..+..++.+..+.++++.|+.+.+|+++..+|.+..+..+.-.+..|+.|+++|    |+ |||| -++.+.+..++++
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            4556667777778899999999999999999999999999999999999999999    66 9855 5555666666665


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +++...   |..              +.......+++...+..++.........++.+|+.++.+     +|.+..++..
T Consensus        92 ~llf~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~  149 (473)
T PRK10429         92 FLLFSA---HLF--------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPR  149 (473)
T ss_pred             HHHHcC---CCC--------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHH
Confidence            555432   210              011123344455556677778888888999999996543     3899888877


Q ss_pred             HHHhHHHHHHhhhhhhhcc-------ccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhcc
Q 008623          192 FSINIGALIASSVLVWIQD-------NEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHK  264 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~-------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (559)
                      ...++|+.+.+.+...+.+       ..+|+....+.+++.++..+..++..|+... ++..++..              
T Consensus       150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~--------------  214 (473)
T PRK10429        150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVSAE--------------  214 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccccc--------------
Confidence            7778876666555443321       1245555554544444433333332332110 00000000              


Q ss_pred             ccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 008623          265 VELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGII  344 (559)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  344 (559)
                                                  .                    +..++++.. +.+.+.|.+...+...+....
T Consensus       215 ----------------------------~--------------------~~~~~~~~~-~~~~~n~~~~~ll~~~~~~~~  245 (473)
T PRK10429        215 ----------------------------G--------------------SHLTLKDIV-ALIYKNDQLSCLLGMALAYNI  245 (473)
T ss_pred             ----------------------------c--------------------cCCCHHHHH-HHHhcCHHHHHHHHHHHHHHH
Confidence                                        0                    000000000 001111223222222222222


Q ss_pred             HHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH
Q 008623          345 FSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFI  424 (559)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~  424 (559)
                      ..........++..   +   ..+. .  -....+..+..+..++..++..+    +.+|+++       ++.+.++..+
T Consensus       246 ~~~~~~~~~~y~~~---y---~~~~-~--~~~~~~~~~~~i~~ii~~~~~~~----l~~r~gk-------k~~~~~~~~~  305 (473)
T PRK10429        246 ASNIINGFAIYYFT---Y---VIGD-A--DLFPYYLSYAGAANLVTLILFPR----LVKSLSR-------RILWAGASIF  305 (473)
T ss_pred             HHHHHhhheeeEEE---E---ECCC-H--HHHHHHHHHHHHHHHHHHHHHHH----HHHHcCc-------HHHHHHHHHH
Confidence            22222222111111   1   1110 0  00111222333444455555544    5555443       3455566665


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCC-------hhhHHHHHH
Q 008623          425 SILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSA  497 (559)
Q Consensus       425 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P-------~~~rg~~~g  497 (559)
                      .+++.+........               .+.+.+.+++..++.+++.+...+..++++.|..|       ++..|...|
T Consensus       306 ~~~~~~~~~~~~~~---------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        306 PVLSCGVLLLMGLA---------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHHHHhcc---------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            55555444321100               01233445556677889999999999999999977       455777999


Q ss_pred             HHHHHHHHHHHHhhHHHHHhhhhhccC
Q 008623          498 LSLTTVALGNYLSSLLVTIVTSISTKN  524 (559)
Q Consensus       498 ~~~~~~~lg~~lg~~l~~~v~~~~~~~  524 (559)
                      ++.++..+|..+++.+.|.+.+..+.+
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999998876643

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=5.7e-16  Score=156.69  Aligned_cols=149  Identities=13%  Similarity=0.082  Sum_probs=136.0

Q ss_pred             hcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccC
Q 008623           60 QLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVT  139 (559)
Q Consensus        60 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (559)
                      .++-+.++.|++.+...+.+.+..|+.|.+.||+ |+|-.+++|..++..+++++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            4566788999999999999999999999999998 99999999999999999999876                      


Q ss_pred             cchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhH
Q 008623          140 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG  219 (559)
Q Consensus       140 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~  219 (559)
                       +++++++++|.++|+|.++...+..++++|.+|+++     +|++++|+.-....+|-.+||.++|.+.+..|++.+|.
T Consensus       157 -~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl  230 (464)
T KOG3764|consen  157 -NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL  230 (464)
T ss_pred             -chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence             567889999999999999999999999999999987     59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 008623          220 IPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       220 i~~~~~~i~~~~~~~~~~  237 (559)
                      +.+++.++...+-++..+
T Consensus       231 VL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  231 VLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHHHHHheeC
Confidence            999888777766555543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.69  E-value=8.9e-16  Score=164.45  Aligned_cols=363  Identities=15%  Similarity=0.130  Sum_probs=226.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhH----hccchhHHHH-HHHHHHHHHHHH
Q 008623           39 ECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLAD----AYLGRYWTIA-IFSIIYVIGMTF  113 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~~~-~~~~~~~~~~~~  113 (559)
                      .+..+..+.....+++.|+.+.+|+++..++.+..+..+...+..|+.|+++|    |+ ||||-.+ .+.+..+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            45666666667778999999999999999999999999999999999999999    77 9777655 566777777766


Q ss_pred             HhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHH
Q 008623          114 LTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFS  193 (559)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  193 (559)
                      +...  .|.-.             +.......+.+..++..++.........++.+|..++.+     +|.+..++....
T Consensus        89 lf~~--~p~~~-------------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~  148 (428)
T PF13347_consen   89 LFSP--PPAGL-------------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIF  148 (428)
T ss_pred             hhcc--ccchh-------------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHH
Confidence            6543  02000             111233445666677788888888999999999998754     399999998888


Q ss_pred             HhHHHHHHhhhhhhhcccc-------CchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhcccc
Q 008623          194 INIGALIASSVLVWIQDNE-------GWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVE  266 (559)
Q Consensus       194 ~~iG~~igp~i~~~l~~~~-------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (559)
                      ..+|..+...+.+.+.+..       +|++...+.+++.++..+...+..|+.+.+.+++++...               
T Consensus       149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~---------------  213 (428)
T PF13347_consen  149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKIS---------------  213 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccc---------------
Confidence            8888876655555444322       577777766665555555544444441110000000000               


Q ss_pred             CCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008623          267 LPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFS  346 (559)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  346 (559)
                                                                     ....++     ...+.|.+...+...+..   +
T Consensus       214 -----------------------------------------------~~~~~~-----~~~~nr~~~~l~~~~~~~---~  238 (428)
T PF13347_consen  214 -----------------------------------------------LRDSLR-----SLFRNRPFRILLLAFFLQ---W  238 (428)
T ss_pred             -----------------------------------------------cccchh-----hhcccchHHHHHHHHHHH---H
Confidence                                                           000000     001111122222122222   1


Q ss_pred             HHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008623          347 AVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI  426 (559)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~  426 (559)
                      .......+...+...   ..++.+   -..+.+.....+..++..|+..+    +.+|+++|       +.+..+.++.+
T Consensus       239 ~~~~~~~~~~~y~~~---~vl~~~---~~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~~~  301 (428)
T PF13347_consen  239 LAFALMNTFLPYYFT---YVLGNE---GLISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLLAA  301 (428)
T ss_pred             hhhhhhhhHHHHHHH---HHhcCc---hhhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHHHH
Confidence            222212222121111   111100   00112222333444445555544    56665444       46777888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCCh-------hhHHHHHHHH
Q 008623          427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD-------AMRSLCSALS  499 (559)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~-------~~rg~~~g~~  499 (559)
                      ++.++..+...                  .+.+++.+..++.+++.+...+..+++..|..+.       +..|...|++
T Consensus       302 ~~~~~~~~~~~------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~  363 (428)
T PF13347_consen  302 LGFLLLFFLGP------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN  363 (428)
T ss_pred             HHHHHHHHHHh------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence            87777666532                  2566777888999999999999999999998883       4579999999


Q ss_pred             HHHHHHHHHHhhHHHHHhhhhhccCCCC
Q 008623          500 LTTVALGNYLSSLLVTIVTSISTKNGNL  527 (559)
Q Consensus       500 ~~~~~lg~~lg~~l~~~v~~~~~~~~~~  527 (559)
                      +....++..+++.+.+.+.+..+.+.+.
T Consensus       364 ~~~~k~~~~la~~i~g~~l~~~Gy~~~~  391 (428)
T PF13347_consen  364 SFFIKIGQGLAGAIVGLLLALVGYDANA  391 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence            9999999999999999998877655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.68  E-value=5.9e-16  Score=173.10  Aligned_cols=202  Identities=17%  Similarity=0.188  Sum_probs=147.5

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      +|.+.+.+....+.+....++......-+++++++++++.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            44333333334444555555666666677889999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHhhhhccCC-C----------------CCCCCCCCCCc--------cccc-C--cchhHHHHHHHHHHHHhccCC
Q 008623          109 IGMTFLTVTASVSG-L----------------KPVCHGPRGEE--------TCQV-T--DAQSATFFVALYLIALGTGGI  160 (559)
Q Consensus       109 ~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~--------~~~~-~--~~~~~~~~~~~~l~g~g~g~~  160 (559)
                      ++.+++++...+.. +                .+.|......+        .|+. +  +.....++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            99998876532110 0                00121000000        0110 0  113556789999999999999


Q ss_pred             CcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc----------------------Cchhhh
Q 008623          161 KPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE----------------------GWGWGF  218 (559)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~----------------------g~~~~f  218 (559)
                      .+...+++.|.+|+++      |+...++++.+..+|..+|+++++++.+.+                      +|+..|
T Consensus       190 ~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       190 FPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             hhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            9999999999999987      999999999999999999999999876532                      267778


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q 008623          219 GIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       219 ~i~~~~~~i~~~~~~~~~~  237 (559)
                      ++.+++.++..+.+++..+
T Consensus       264 li~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       264 LICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHHHHHhCcc
Confidence            8777666555544444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09848 glucuronide transporter; Provisional

Probab=99.66  E-value=1.5e-14  Score=155.91  Aligned_cols=359  Identities=9%  Similarity=0.025  Sum_probs=196.3

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc---cchhHHH-HHHHHHHHHHHH
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY---LGRYWTI-AIFSIIYVIGMT  112 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~-~~~~~~~~~~~~  112 (559)
                      ...+..+..+....++++.|+++.+|++..++|.+.+...+...+..|+.|+++||.   +||||.. ..+.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            455666777777778888999999999999999999999999999999999999994   2666655 455554444443


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      ++...   |...             ......+..++...+.+++.+...+...++..++.++.+     +|.+..++..+
T Consensus        95 ~~~~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~  153 (448)
T PRK09848         95 LVFWV---PTDW-------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGI  153 (448)
T ss_pred             HHHhC---cCCC-------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHH
Confidence            33211   1100             011123334445566788888888888888888777644     37776665544


Q ss_pred             H-----HhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccC
Q 008623          193 S-----INIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVEL  267 (559)
Q Consensus       193 ~-----~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (559)
                      +     .+++..++|.+.+.........+..+. .++.+++++..+......+++.+++.+.....+             
T Consensus       154 ~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------------  219 (448)
T PRK09848        154 AASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKI-------------  219 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHH-------------
Confidence            3     345666667665533221111111111 122222222222111111110000000000000             


Q ss_pred             CCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008623          268 PADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSA  347 (559)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  347 (559)
                                                                       .+     +.+.+.|.+....   +...+.+.
T Consensus       220 -------------------------------------------------~~-----~~l~~n~~f~~~~---~~~~~~~~  242 (448)
T PRK09848        220 -------------------------------------------------SL-----QTLKRNRPLFMLC---IGALCVLI  242 (448)
T ss_pred             -------------------------------------------------HH-----HHHhCCchHHHHH---HHHHHHHH
Confidence                                                             00     0001112222111   11111222


Q ss_pred             HhcccchhhhhccccccCCCCCccceeCcc--cccccc-ceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH
Q 008623          348 VYSQMSSLFVLQGERMDTHVGNSSFKIPPA--SLSIFD-TLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFI  424 (559)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~-~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~  424 (559)
                      .+........+   +.+..++     .++.  .+...+ .+..++..++..+    +.+|       .++++.+.+|.++
T Consensus       243 ~~~~~~~~~~~---~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~r-------~g~~~~~~~g~~~  303 (448)
T PRK09848        243 STFAVSASSLF---YVRYVLN-----DTGLFTVLVLVQNLVGTVASAPLVPG----MVAR-------IGKKNTFLIGALL  303 (448)
T ss_pred             HHHHHhhhhee---eEeeecC-----ChHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHH
Confidence            22222221111   1111222     1111  011111 2223333444443    4444       3444677788888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChh-------hHHHHHH
Q 008623          425 SILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA-------MRSLCSA  497 (559)
Q Consensus       425 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~-------~rg~~~g  497 (559)
                      .+++.+.+.+...                  .+.+...+..++.++|+++..+..+++..+..|.+       .+|..+|
T Consensus       304 ~~i~~~~~~~~~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~  365 (448)
T PRK09848        304 GTCGYLLFFWVSV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS  365 (448)
T ss_pred             HHHHHHHHHHcCc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence            7777766554210                  24445556678889999999999999999988754       4699999


Q ss_pred             HHHHHHHHHHHHhhHHHHHhhhhhccC
Q 008623          498 LSLTTVALGNYLSSLLVTIVTSISTKN  524 (559)
Q Consensus       498 ~~~~~~~lg~~lg~~l~~~v~~~~~~~  524 (559)
                      ++++.+.+|..+++.+.+.+.+..+.+
T Consensus       366 ~~~~~~klg~aig~~i~g~~l~~~G~~  392 (448)
T PRK09848        366 LFSFTRKCGQAIGGSIPAFILGLSGYI  392 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999998776644

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.65  E-value=1.7e-14  Score=157.19  Aligned_cols=149  Identities=18%  Similarity=0.241  Sum_probs=118.0

Q ss_pred             hHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 008623           52 NLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPR  131 (559)
Q Consensus        52 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (559)
                      ....++.+++|-+ ....|+...+.+...+..++.|.++|.+ |||+.++.+.++.++|.+..+.+              
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA--------------  128 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA--------------  128 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence            3446788889865 5567888889999999999999999998 99999999999999999998766              


Q ss_pred             CCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc
Q 008623          132 GEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN  211 (559)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~  211 (559)
                               ++...++.+..+.|+|.|... .....++|..|.+.      |..+.++.....-+...++|.++..+..+
T Consensus       129 ---------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  129 ---------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             ---------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence                     457778999999999977664 34555899999876      77766665555555555677777666667


Q ss_pred             cCchhhhHHHHHHHHHHHHHH
Q 008623          212 EGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       212 ~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      .+|||.|++.++...++++..
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHHH
Confidence            789999999887766665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.64  E-value=9.2e-14  Score=146.99  Aligned_cols=350  Identities=13%  Similarity=0.084  Sum_probs=191.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhh
Q 008623           39 ECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA  118 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  118 (559)
                      .++....+-...++++.|+++ .|+|..|.|.+.+...+...+++++.|+++||...+||.+.+..++..+........ 
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~-   88 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS-   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence            334444444556889999975 779999999999999999999999999999998346777766666555544444332 


Q ss_pred             ccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHH
Q 008623          119 SVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA  198 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~  198 (559)
                                            .+.+.+++..++..+......|...++..+...+        ++.-++-...-..+|-
T Consensus        89 ----------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf  138 (400)
T PF03825_consen   89 ----------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGF  138 (400)
T ss_pred             ----------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHH
Confidence                                  3355566666666777666667777776666653        2334444444555666


Q ss_pred             HHHhhh-hhhhcccc---CchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccchh
Q 008623          199 LIASSV-LVWIQDNE---GWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLL  274 (559)
Q Consensus       199 ~igp~i-~~~l~~~~---g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  274 (559)
                      +++... ++++....   +..+.+++.+...++.....+..++ .+.++..+++.++                       
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~-~~~~~~~~~~~~~-----------------------  194 (400)
T PF03825_consen  139 IVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPK-TPPKRSAKESVKK-----------------------  194 (400)
T ss_pred             HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCC-CccccccCCCccc-----------------------
Confidence            555432 22232222   2234455555433322222222221 1100000000000                       


Q ss_pred             hhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008623          275 YETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSS  354 (559)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (559)
                                                               ..++  +..++-+.|++...+...+........+..+.+
T Consensus       195 -----------------------------------------~~~~--~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~  231 (400)
T PF03825_consen  195 -----------------------------------------LLGL--DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFS  231 (400)
T ss_pred             -----------------------------------------ccch--HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     0000  000011112222111111111211222222222


Q ss_pred             hhhhccccccCCCCCcccee-CccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008623          355 LFVLQGERMDTHVGNSSFKI-PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAA  433 (559)
Q Consensus       355 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~  433 (559)
                      .+..      +. |  ++.. ..+...++..+.-+....        +.+|+.+|   ++..+.+.++.+..++=+.+++
T Consensus       232 ~yl~------~~-g--g~~~~~~g~~~~l~~~aEi~~f~--------~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  232 IYLQ------EL-G--GYSGSTIGILWALGVVAEIPFFF--------FSGRFLKR---FGIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHH------Hc-c--cchhhHHHHHHHHHHHHHHHHHH--------HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHH
Confidence            2221      11 1  1100 011111222222222222        22333333   6677788899999988888887


Q ss_pred             HHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHH-HHHHHHHHHhhH
Q 008623          434 VLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSL  512 (559)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~  512 (559)
                      ....+               .............+.|+..++.......++.+.+|++.|++++|+++ +..++|+.+|++
T Consensus       292 ~~~~~---------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~  356 (400)
T PF03825_consen  292 YFSDP---------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL  356 (400)
T ss_pred             HhcCC---------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence            65210               00111122333467999999999999999999999999999999998 467999999999


Q ss_pred             HHHHhhhhhc
Q 008623          513 LVTIVTSIST  522 (559)
Q Consensus       513 l~~~v~~~~~  522 (559)
                      ++|++.|..+
T Consensus       357 igG~l~~~~g  366 (400)
T PF03825_consen  357 IGGWLYDAFG  366 (400)
T ss_pred             HHHHHHHHhc
Confidence            9999998655

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.62  E-value=5e-14  Score=148.22  Aligned_cols=155  Identities=12%  Similarity=0.028  Sum_probs=135.7

Q ss_pred             hhhHHHHHhhhcCCChhh-hHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 008623           50 STNLVRYFKHQLDQSSST-ASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCH  128 (559)
Q Consensus        50 ~~~l~~yl~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (559)
                      .++...|+.+++|++..+ .|.+.+++..++.++.+++|+++||+ |.|+++.++.+...+..++++++           
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa-----------  112 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG-----------  112 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence            456777999999999999 99999999999999999999999998 99999999999999999998887           


Q ss_pred             CCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhh
Q 008623          129 GPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI  208 (559)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l  208 (559)
                                  .+...+.+.|++.|++.|... +...++..++|+++      |+++.++.+.+..+|.++++++++++
T Consensus       113 ------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       113 ------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        457889999999999999999 99999999999987      99999999999999999999999984


Q ss_pred             ccccCchhh---hHHHHHHHHHHHHHHHhcc
Q 008623          209 QDNEGWGWG---FGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       209 ~~~~g~~~~---f~i~~~~~~i~~~~~~~~~  236 (559)
                       ..+||++-   .+++.....+++++.++.+
T Consensus       174 -~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       174 -VTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             -HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence             46788854   3455555566666655554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.62  E-value=2.1e-14  Score=157.85  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=124.6

Q ss_pred             hhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc
Q 008623           59 HQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQV  138 (559)
Q Consensus        59 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (559)
                      +..+.+........+++.++..+++++.|.++||+ |||++++.+.++.+++.+..+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            45667778888999999999999999999999996 99999999999999998888877                     


Q ss_pred             CcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhh
Q 008623          139 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGF  218 (559)
Q Consensus       139 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f  218 (559)
                        .+.+.+.+.|++.|++.++...+...+++|++++++      |+.+..+ ......++.++|.+++++..  +||+.+
T Consensus       169 --~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~  237 (521)
T KOG0255|consen  169 --PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF  237 (521)
T ss_pred             --CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence              568899999999999999999999999999999997      9999999 77888888889988888877  799999


Q ss_pred             HHHHHHHHHHHHH
Q 008623          219 GIPAVAMAIAVVS  231 (559)
Q Consensus       219 ~i~~~~~~i~~~~  231 (559)
                      ++..+..++.++.
T Consensus       238 ~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  238 WIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887766655554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1e-13  Score=150.38  Aligned_cols=399  Identities=13%  Similarity=0.062  Sum_probs=238.5

Q ss_pred             hhHhhHHHHHHHHHHhhh---hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMS---TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |..++..|..++..+++.   ..+-..++++++.+.++++|+.++......+..|+.+.+.||+ |.|.+++.|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            777788888888777774   3455667788999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHH-HHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVAL-YLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      +.++..++                       .+.+.+++.. ++.|+|.++.......++..+|+++       |+.+.|
T Consensus       124 g~~lssF~-----------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~G  173 (509)
T KOG2504|consen  124 GLLLSSFA-----------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATG  173 (509)
T ss_pred             HHHHHHHH-----------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHh
Confidence            99999887                       3466565555 5579999999999999999998876       999999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCC
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELP  268 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (559)
                      +...+..+|..+=|.+..++.+.+|||..+++.+...+-.++.....++.....++.  ..++...        ......
T Consensus       174 ia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~  243 (509)
T KOG2504|consen  174 IAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVE  243 (509)
T ss_pred             hhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------cccccc
Confidence            999999999999999999999999999999888766655554444444322222111  0000000        000000


Q ss_pred             CccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCcc-cc---chhhHHHHHHHHH-HHHHHHHHH
Q 008623          269 ADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWR-LC---TVTQVEELKAIVR-LLPIWATGI  343 (559)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~-~~~~~~~~~  343 (559)
                      ... ...+.      +...++....+ .........+ ....+. ...+.+ ..   ..+..++ +.++. .+...+...
T Consensus       244 ~~~-~~~~~------~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~d~~ll~~-~~fl~~~~~~~~~~~  312 (509)
T KOG2504|consen  244 STP-KPVEL------RISERDSGLKK-LSLSNLATLK-RGPDKW-RNSPLQAFLSMLDLSLLKD-PKFLLLALSNLFAYL  312 (509)
T ss_pred             ccc-ccccc------ccccCCCCCCc-ccccchhhhh-hCCccc-cccchhhhhhhhhHHHHcC-chHHHHHHHHHHHHH
Confidence            000 00000      00000000000 0000000000 000000 000110 00   0111111 22221 122222222


Q ss_pred             HHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHH
Q 008623          344 IFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF  423 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~  423 (559)
                      .+...+..++....  ....+++        .......+..+.-+++.++.+.    +.++..     ........++++
T Consensus       313 g~~~p~~~l~~~~~--~~g~~~~--------~aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll  373 (509)
T KOG2504|consen  313 GFNVPFVYLPSYAK--SLGLSSN--------DAAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLL  373 (509)
T ss_pred             HHHHHHHHHHHHHh--hcCCChh--------hhHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHH
Confidence            22222222111111  0111111        1112223334444445555544    222211     123334455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHH
Q 008623          424 ISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV  503 (559)
Q Consensus       424 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~  503 (559)
                      +.+++.+.....                    .+.+.++...++.|+..+.........+.+..+.+.-..+.|+..+.+
T Consensus       374 ~~gl~~~~~p~~--------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  374 IAGLARLFLPFA--------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             HHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            666655444442                    255566667788889888888888889999999999999999999999


Q ss_pred             HHHHHHhhHHHHHhhhhhc
Q 008623          504 ALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       504 ~lg~~lg~~l~~~v~~~~~  522 (559)
                      +++..+|+.+.|.+.+.++
T Consensus       434 gi~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITG  452 (509)
T ss_pred             HHHHHcCcccceeeeeccC
Confidence            9999999999998877655

>TIGR00788 fbt folate/biopterin transporter

Probab=99.60  E-value=1.5e-13  Score=148.86  Aligned_cols=378  Identities=15%  Similarity=0.097  Sum_probs=215.3

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccc-----hhHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLG-----RYWTIAIFSI  105 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~~~~  105 (559)
                      .+.++....+...+. +.+...++.++++++|++.++.+.+.+...+...+ .+++|.++||+ +     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCCCccchHHHHHHHH
Confidence            344555567788887 77778888999999999999999888888888777 55599999998 7     7777777766


Q ss_pred             HHH-HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc
Q 008623          106 IYV-IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS  184 (559)
Q Consensus       106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (559)
                      +.. ++...+...                      ........+.+++.+++.+.......++..|..+ +++   ..++
T Consensus       104 l~~~~~~~~l~~~----------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~  157 (468)
T TIGR00788       104 LGSAILYGLLPGK----------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGP  157 (468)
T ss_pred             HHHHHHHHhcccc----------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCC
Confidence            542 222222111                      1223333446778899999999999999999998 431   1233


Q ss_pred             cchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccc-cCCCCChhHHHHHHHHHHHhhc
Q 008623          185 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN-QKPGGSPLTRICQVVAASIRKH  263 (559)
Q Consensus       185 ~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  263 (559)
                      ...++.+...++|..+|+.++|.+.+..+|+..|++.++..++..+...+. ++.++ ..++..+....           
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~~-----------  225 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLEM-----------  225 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccchh-----------
Confidence            345566666789999999999999999999999998877666654333333 22111 01110000000           


Q ss_pred             cccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008623          264 KVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGI  343 (559)
Q Consensus       264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  343 (559)
                                 +..                    .......+....       .++  ........|.+...+.+.+.. 
T Consensus       226 -----------~~~--------------------~~~~~~~~~~~~-------~~~--~l~~~l~~~~i~~~l~fifl~-  264 (468)
T TIGR00788       226 -----------NMA--------------------LLTLGVLANVKV-------QIL--GLRGAIQLLEIAKPLIFIFLS-  264 (468)
T ss_pred             -----------hhh--------------------hhhhhHHHHHHH-------HHH--HHHHHHhcHHHHHHHHHHHHH-
Confidence                       000                    000000000000       000  000001112222211111110 


Q ss_pred             HHHHHhcccc-hhhhhccccccCCCCCccceeCccc---cccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHH
Q 008623          344 IFSAVYSQMS-SLFVLQGERMDTHVGNSSFKIPPAS---LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG  419 (559)
Q Consensus       344 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~  419 (559)
                        +....... ..+...    ...+|     .++..   ......+..+++..+.++        +.+|   .+.++.+.
T Consensus       265 --~~~~~~~~~~~f~~~----~~~lG-----~s~~~~G~~~~~~~v~~i~g~~~~~~--------~~~~---~~~r~~l~  322 (468)
T TIGR00788       265 --YANLPGASGSVFCAT----TQCLP-----GGPSFSGMSKVVGNLGSLCGVGGYDR--------FLKT---FPYRLLFG  322 (468)
T ss_pred             --HhhcCCCCceeEEEE----cccCC-----CCcchhhhHHHHHHHHHHHHHHHHHH--------HHhh---CCHHHHHH
Confidence              11111111 111111    11223     22222   222333333444444433        3333   56666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHH
Q 008623          420 IGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALS  499 (559)
Q Consensus       420 ~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~  499 (559)
                      ++.++.+++.+........      -|-    .....+.+++....++.+++.++.......++.+.+|++.+|+..|+.
T Consensus       323 ~~~~l~~~~~~~~~~l~~~------~~~----~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~  392 (468)
T TIGR00788       323 VTTLLYTLSSLFDLILVKR------WNL----AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALL  392 (468)
T ss_pred             HHHHHHHHHHhCceeeeec------ccc----ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHH
Confidence            7777777666443211100      000    000012233444557777777888888899999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHhhhhhc
Q 008623          500 LTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       500 ~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      +...++|+.+++.+++.+.+..+
T Consensus       393 ~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       393 ASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999987644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=99.59  E-value=2.3e-13  Score=147.25  Aligned_cols=176  Identities=11%  Similarity=0.155  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHh---ccchhHHHHH-HHHHHHHHHH
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADA---YLGRYWTIAI-FSIIYVIGMT  112 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grr~~~~~-~~~~~~~~~~  112 (559)
                      ...+..+..+..+..++..|..+.+|+++..+|.+..+.-+.-.+..|+.|+++||   .+||||..++ +.+.++++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            45556667777777889999999999999999999999999999999999999997   2498776665 5566666666


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      ++...   |..              +.......+.+.-.+..++.........++.+|+.++.+     +|.+..++...
T Consensus        96 llf~~---p~~--------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~  153 (460)
T PRK11462         96 LAYST---PDL--------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFV  153 (460)
T ss_pred             HHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHH
Confidence            55433   220              111223344555556677888888888999999998765     49999999999


Q ss_pred             HHhHHHHHHhhhhhhhccc-------cCchhhhHHHHHHHHHHHHHHHh
Q 008623          193 SINIGALIASSVLVWIQDN-------EGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~-------~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +.++|+.+++.+...+...       .||+....+.+++.+++....+.
T Consensus       154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888887665444332       24665554444444444433333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.56  E-value=6.8e-13  Score=133.51  Aligned_cols=343  Identities=15%  Similarity=0.184  Sum_probs=229.3

Q ss_pred             HhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHH
Q 008623           35 ILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFL  114 (559)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  114 (559)
                      +.++.+-.+...-++-+.+ .-+++++|+|.+.+|.+++...++..+..|+..+++.|+ |..+.+..++++.+++...=
T Consensus        17 Ivlia~NLR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR   94 (395)
T COG2807          17 IVLIAFNLRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIR   94 (395)
T ss_pred             HHHHHhccchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence            3344444555555554444 567889999999999999999999999999999999998 99999999999888887654


Q ss_pred             hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHH
Q 008623          115 TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI  194 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  194 (559)
                      ..                        .+...++.+-.+.|.|.+..+...++.+.+.||++       -+..++.|..+.
T Consensus        95 ~~------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl  143 (395)
T COG2807          95 SL------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSL  143 (395)
T ss_pred             hc------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHH
Confidence            32                        23566888899999999999999999999999988       588999999999


Q ss_pred             hHHHHHHhhhhhhhcccc-CchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCCccch
Q 008623          195 NIGALIASSVLVWIQDNE-GWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSL  273 (559)
Q Consensus       195 ~iG~~igp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (559)
                      ++|+.+++.+...+.++. ||+..+..-+...+++++..+--.  .|++.+..+...                .      
T Consensus       144 ~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r~~~~~~~~~~----------------~------  199 (395)
T COG2807         144 GAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA--LREQAASIATKL----------------V------  199 (395)
T ss_pred             HHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--cccccccccccc----------------c------
Confidence            999999999998888877 699998888877766665443221  111100000000                0      


Q ss_pred             hhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008623          274 LYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMS  353 (559)
Q Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (559)
                                                          .   ..+-|++        .......+.+=+...++|..+.+++
T Consensus       200 ------------------------------------~---~~~vw~~--------~~aW~vtLfmGlqS~~~Y~~~~WLP  232 (395)
T COG2807         200 ------------------------------------S---VRKVWRS--------PLAWQVTLFMGLQSLLYYIVIGWLP  232 (395)
T ss_pred             ------------------------------------c---ccccccC--------chhHHHHHHHHhhHHHHHHHHHHHH
Confidence                                                0   0111210        0011112223355677788888888


Q ss_pred             hhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008623          354 SLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAA  433 (559)
Q Consensus       354 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~  433 (559)
                      .++.++...-.+. |     ...+.. .+..+..-+..|.       +.+|.      .+.+........++.+++..+.
T Consensus       233 ~ili~~G~sa~~a-G-----~llsl~-~l~~~~~~ll~P~-------la~R~------~n~r~~~~~~~~~~l~G~~G~~  292 (395)
T COG2807         233 AILIDRGLSAAEA-G-----SLLSLM-QLAQLPTALLIPL-------LARRS------KNQRPLVVLALLLMLVGLVGLL  292 (395)
T ss_pred             HHHHHcCCCHHHh-h-----hHHHHH-HHHHHHHHHHHHH-------HHHHh------cccchHHHHHHHHHHHHHHHHH
Confidence            8777653321111 1     000111 1111111222222       22331      1233455556666777776666


Q ss_pred             HHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCC-hhhHHHHHHHHHHHHHHHHHHhhH
Q 008623          434 VLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTVALGNYLSSL  512 (559)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~  512 (559)
                      +...+                 ..++|    .++.|+|.+..+|....++...++ ++..+..+|+.+..+.+=...||.
T Consensus       293 ~~P~~-----------------~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~  351 (395)
T COG2807         293 LAPGQ-----------------LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW  351 (395)
T ss_pred             Hhhhh-----------------HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence            54322                 23333    488899999999999998887766 555677888888888888999999


Q ss_pred             HHHHhhhhhc
Q 008623          513 LVTIVTSIST  522 (559)
Q Consensus       513 l~~~v~~~~~  522 (559)
                      +.|.+.|.++
T Consensus       352 l~G~lhDa~g  361 (395)
T COG2807         352 LFGFLHDATG  361 (395)
T ss_pred             hHhHHHHhcC
Confidence            9999999776

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=9.1e-13  Score=134.49  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=126.2

Q ss_pred             hHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHH
Q 008623           34 FILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTF  113 (559)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  113 (559)
                      ..+...|+...........+...+++.++.+..+++.+...+..++.++.+..|++.+|+ |+|+.+++|+.+++++..+
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~l   94 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAAL   94 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            333344444444445567788889999999999999999999999999999999999999 9999999999999999887


Q ss_pred             HhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHH
Q 008623          114 LTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFS  193 (559)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  193 (559)
                      ..-+                    ....++..+++++++.+.|.+.....++++++.+.+++.      ..+-+++.+..
T Consensus        95 F~pA--------------------a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~f  148 (422)
T COG0738          95 FWPA--------------------ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAF  148 (422)
T ss_pred             Hhhh--------------------hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHh
Confidence            7644                    223567788999999999999999999999999999875      45567778888


Q ss_pred             HhHHHHHHhhhhhhhcc
Q 008623          194 INIGALIASSVLVWIQD  210 (559)
Q Consensus       194 ~~iG~~igp~i~~~l~~  210 (559)
                      ..+|++++|++++++..
T Consensus       149 n~lGa~~gp~~g~~lil  165 (422)
T COG0738         149 NGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            89999999999998876

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.54  E-value=9.2e-14  Score=143.12  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=94.3

Q ss_pred             CChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcch
Q 008623           63 QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQ  142 (559)
Q Consensus        63 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (559)
                      +++...+.+.++..++..+++++.||++||+ |||+++-..+++++++++.+++....+.                ...-
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~----------------~~~~  143 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTS----------------PLGV  143 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCC----------------Ccch
Confidence            6677788999999999999999999999998 9999999999999999987765532221                2234


Q ss_pred             hHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHh
Q 008623          143 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS  202 (559)
Q Consensus       143 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp  202 (559)
                      ++++...|+++|+|.|+-.|...+..+|...++.      |+...+......+.|...|.
T Consensus       144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~  197 (538)
T KOG0252|consen  144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGG  197 (538)
T ss_pred             hhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhcc
Confidence            7789999999999999999999999999887775      88877765555555444444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.54  E-value=3.9e-13  Score=140.59  Aligned_cols=365  Identities=10%  Similarity=-0.002  Sum_probs=201.7

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH-HHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII-YVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~  109 (559)
                      ..|......+.....+-...++++.+++++.|++.++.|.+.++..+...+.+|+.|.++||+ |.||-++....+ ..+
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence            466666677777777777789999999999999999999999999999999999999999998 966655443322 221


Q ss_pred             -HHHHH-hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          110 -GMTFL-TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       110 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                       +-+.. ...   |..                   ...+.++.++.++..+.......+.. |..-++.   +++.+-=+
T Consensus        87 ~~pff~~v~~---pll-------------------~~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~---sr~~~feY  140 (412)
T PF01306_consen   87 FGPFFIYVFG---PLL-------------------QSNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERV---SRRNGFEY  140 (412)
T ss_dssp             CHHHHHHTHH---HHH-------------------HTT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHH---HHHHSS-H
T ss_pred             HHHHHHHHHH---HHH-------------------HHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHH---HHHhcCCc
Confidence             22222 111   100                   01123333333444444333332222 3222221   11112223


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccC
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVEL  267 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (559)
                      |-..+-..+|.+++..++|.+.+ .+-+..|++.....++..++.++.++...++.+. .+..                 
T Consensus       141 G~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~-~~~~-----------------  201 (412)
T PF01306_consen  141 GRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEV-ADAL-----------------  201 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-S-STTS-----------------
T ss_pred             chHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhh-hccc-----------------
Confidence            44566778999999999998876 4556778866554444443333332211111000 0000                 


Q ss_pred             CCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008623          268 PADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSA  347 (559)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  347 (559)
                                              ..                    +..+.......++.+.|++...+.+.....+.|-
T Consensus       202 ------------------------~~--------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~  237 (412)
T PF01306_consen  202 ------------------------GA--------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYD  237 (412)
T ss_dssp             ------------------------SS--------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------cc--------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence                                    00                    0000000000011122344444434444444444


Q ss_pred             H-hcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008623          348 V-YSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI  426 (559)
Q Consensus       348 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~  426 (559)
                      . .+|++.++...-.  +..       .....+...+.+.+++=.+... ...++.+|       .+.+..+.++..+++
T Consensus       238 vfdqqf~~y~~~~f~--~~~-------~g~~~~G~l~s~~v~~E~~~m~-~~p~li~r-------ig~k~~Lllag~i~~  300 (412)
T PF01306_consen  238 VFDQQFPIYFASFFQ--SAG-------QGNQMYGYLWSVQVFLEALMMF-FSPWLINR-------IGAKNLLLLAGVIMA  300 (412)
T ss_dssp             HHHHHHHHHHHHTSS--SHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------H-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc--ccc-------cChhHHhHHHHHHHHHHHHHHH-HHHHHHHh-------cChHhHHHHHHHHHH
Confidence            4 4454443332111  111       1111222222222222222221 12235555       455567778888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHH-HHHHHH
Q 008623          427 LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALS-LTTVAL  505 (559)
Q Consensus       427 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~-~~~~~l  505 (559)
                      +=.+..++.+                    +++++++.-.+.++-..+......-|+.+..|++..++...+. +...++
T Consensus       301 iRi~~~~~~~--------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~  360 (412)
T PF01306_consen  301 IRIIGSGFAT--------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQI  360 (412)
T ss_dssp             HHHHHHHT----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHH
T ss_pred             HHHHHHhhhc--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHH
Confidence            8877777643                    6677777779999988889999999999999999999999886 599999


Q ss_pred             HHHHhhHHHHHhhhhhc
Q 008623          506 GNYLSSLLVTIVTSIST  522 (559)
Q Consensus       506 g~~lg~~l~~~v~~~~~  522 (559)
                      |..+.+.+.|.+.|..+
T Consensus       361 ~~~i~s~~~G~lyd~~G  377 (412)
T PF01306_consen  361 GIIILSPLAGYLYDRIG  377 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHhhHhhcC
Confidence            99999999999988654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.50  E-value=4e-12  Score=127.46  Aligned_cols=182  Identities=13%  Similarity=0.066  Sum_probs=133.7

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhh
Q 008623           39 ECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA  118 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  118 (559)
                      ..+......+....+..-++..+|++..+..++......+..++...+|.++|++ ||||...+......+..+.-... 
T Consensus        86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-  163 (528)
T KOG0253|consen   86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-  163 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-
Confidence            3444444445555555666778899999999999999999999999999999999 99999988776655544444333 


Q ss_pred             ccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHH
Q 008623          119 SVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA  198 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~  198 (559)
                                            .++..+.+.|.+.|+|.|+ .|...++-.|..|..+      |....-.. ....+|.
T Consensus       164 ----------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~  213 (528)
T KOG0253|consen  164 ----------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQ  213 (528)
T ss_pred             ----------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHH
Confidence                                  5677899999999999999 8999999999999886      77766655 6778899


Q ss_pred             HHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHH
Q 008623          199 LIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRI  252 (559)
Q Consensus       199 ~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  252 (559)
                      .+...+.=.+..+.||||-.....+...+.+...+......|..-.++++.+.+
T Consensus       214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAl  267 (528)
T KOG0253|consen  214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKAL  267 (528)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHH
Confidence            988877766778889999877666544444443333333333333344554433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=6.8e-13  Score=140.50  Aligned_cols=178  Identities=13%  Similarity=0.044  Sum_probs=132.1

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      +++|..+..+...+.....++.+..++|.|+++++|+++.+.+.+.+...+...++.+++|+++||+ |||+.+..+.+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~  291 (393)
T PRK15011        213 RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVA  291 (393)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence            3444444444444444455566667899999999999999999988887788888999999999998 999988776655


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..+........                       ++.+.+.+.+++.+++.+...+....+..|.+|++       |+++
T Consensus       292 ~~~~~~~~~~~-----------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~  341 (393)
T PRK15011        292 GVCFYAGMLMA-----------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSA  341 (393)
T ss_pred             HHHHHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchH
Confidence            44443332222                       23445556676666666655555667778888754       7899


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      .++++...++|..++|.++|.+.+..||+..|.+.++..+++++..+..
T Consensus       342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999888999999999999999998899999988877777776665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=2.5e-13  Score=148.09  Aligned_cols=181  Identities=13%  Similarity=0.135  Sum_probs=129.6

Q ss_pred             CccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      +++.+...+...++....+|++..++|.|+++.+|++..+.+.+.....++..++.+++|+++||+ |||++++.+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344333344445567788999999999999989999988888888888888999999999999999 9999988887654


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+.+....  .                  ..+...+++++++.+++.+...+....++.|.+|++.      |+++.
T Consensus       327 ~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~  380 (490)
T PRK10642        327 FVLAIPAFILI--N------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSAL  380 (490)
T ss_pred             HHHHHHHHHHH--h------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHH
Confidence            43333222110  0                  0234556677777777766666677788889999997      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      ++.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++.
T Consensus       381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            98555566777889999998877554 6666655555555554444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.8e-13  Score=140.27  Aligned_cols=180  Identities=16%  Similarity=0.179  Sum_probs=147.4

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhcc-chhHHHHHH-HHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYL-GRYWTIAIF-SII  106 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~-~~~  106 (559)
                      .|.+|.+++..++.-..-|++..|.|.|++|+.|+|..++++..+.+..++..+.+++||++||++ |||..+.+. +++
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            367899999999999999999999999999999999999999999999999999999999999998 777655443 444


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+...++   |                  +.+..+..+..+++|+...+..-.+.....|..|++.      .|++
T Consensus       331 i~~~~~~~w~~---~------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA  383 (448)
T COG2271         331 ITASLVLYWLA---P------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA  383 (448)
T ss_pred             HHHHHHHHHcC---C------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence            44554555443   2                  2467778888888888888766666777789999886      8999


Q ss_pred             hhhhhHHHhH-HHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          187 FNWFYFSINI-GALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       187 ~~~~~~~~~i-G~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      .|....+..+ |+..+....|++.|.+||...|.+..+..+++.+++...
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999888888 999999999999999999999887776666665554433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.47  E-value=2.2e-11  Score=131.45  Aligned_cols=66  Identities=18%  Similarity=0.041  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          457 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       457 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      +.+.+.+.-++.|+..+...+..-++..+..|++.++...|++.+++..++.+||++.|.+.+.++
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334455555789999999999999999999999999999999999999999999999999998765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.46  E-value=9e-12  Score=131.67  Aligned_cols=360  Identities=13%  Similarity=0.115  Sum_probs=222.3

Q ss_pred             HhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc---cchhHHHH-HHHHHHHHH
Q 008623           35 ILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY---LGRYWTIA-IFSIIYVIG  110 (559)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~-~~~~~~~~~  110 (559)
                      --...+..+..+-.+..++..|..+..|+++..+|.+..+.-+.-++.-|+.|.+.||.   +||+|-.+ .+.+.+++.
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~   96 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV   96 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence            33455666667777788999999999999999999999999999999999999999983   37766554 455667777


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+++..+   |..              +.+......++.-.+.+++.........++.+++.++.+     +|.+..++-
T Consensus        97 ~~l~F~~---p~~--------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R  154 (467)
T COG2211          97 AVLLFIT---PDF--------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWR  154 (467)
T ss_pred             HHHHHcC---CCc--------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHH
Confidence            7777655   210              112334445555677889999999999999999998765     499999999


Q ss_pred             hHHHhHHHHHHhhhhhhhccc-------cCchhhhHHHHHHHHHHHHHHHhccccccc-cCCCCChhHHHHHHHHHHHhh
Q 008623          191 YFSINIGALIASSVLVWIQDN-------EGWGWGFGIPAVAMAIAVVSFFSGTRLFRN-QKPGGSPLTRICQVVAASIRK  262 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~-------~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  262 (559)
                      ....++|.++...+.+.+...       .||+..-.+.++...+..+..++..|+... ..+.++..+            
T Consensus       155 ~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~------------  222 (467)
T COG2211         155 MVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK------------  222 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc------------
Confidence            999999987776665555432       245554444444333343333333332211 000000000            


Q ss_pred             ccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhH---HHHHHHHHHHHHH
Q 008623          263 HKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQV---EELKAIVRLLPIW  339 (559)
Q Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~  339 (559)
                                                                           .++    ++..   .+.|-+...+.  
T Consensus       223 -----------------------------------------------------~~~----~~~~~~~~~Nrp~~~~l~--  243 (467)
T COG2211         223 -----------------------------------------------------LKL----KDSFLLIFKNRPLLLLLL--  243 (467)
T ss_pred             -----------------------------------------------------ccH----HHHHHHHHccchHHHHHH--
Confidence                                                                 000    0000   11122222222  


Q ss_pred             HHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHH
Q 008623          340 ATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMG  419 (559)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~  419 (559)
                       ...+.+..++...+.+.+...+   .+|  .-+..+...........++..++..    ++.+|++       +++...
T Consensus       244 -~~l~~~~~~~i~~s~~~yy~~y---~lg--~~~l~~~~~~~~~~~~~l~~~~~~p----~L~~~~g-------kk~~~~  306 (467)
T COG2211         244 -MNLLLFIAFNIRGSIMVYYVTY---VLG--DPELFAYLLLLASGAGLLIGLILWP----RLVKKFG-------KKKLFL  306 (467)
T ss_pred             -HHHHHHHHHHHHhhhhheeEEE---EcC--ChHHHHHHHHHHHHHHHHHHHHhHH----HHHHHhc-------hHHHHH
Confidence             2233333333333333332221   112  0011111111111122222233332    3455544       345777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCC-------hhhH
Q 008623          420 IGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMR  492 (559)
Q Consensus       420 ~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P-------~~~r  492 (559)
                      .|.++.+++.+++.+...                  .+....++..++.+++.+...+..++++.|..+       .+..
T Consensus       307 ~~~~~~~i~~~~~~f~~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~e  368 (467)
T COG2211         307 IGLLLLAVGYLLLYFTPA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRRE  368 (467)
T ss_pred             HHHHHHHHHHHHHHhhcC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCch
Confidence            888888888888776531                  245556666688899999999999999988776       3557


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          493 SLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       493 g~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      |...|.+..++-+|.+++..+.|++....+
T Consensus       369 Gi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         369 GIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            889999999999999999999999987655

>PTZ00207 hypothetical protein; Provisional

Probab=99.45  E-value=6.4e-11  Score=130.04  Aligned_cols=153  Identities=12%  Similarity=0.068  Sum_probs=117.6

Q ss_pred             HhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 008623           47 YGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPV  126 (559)
Q Consensus        47 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (559)
                      |++. .....+++++|++..+.+++.+... ...++.++.|+++||+ |||++++++.++..+++++++++..  .    
T Consensus        44 y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~--~----  114 (591)
T PTZ00207         44 YAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQ--E----  114 (591)
T ss_pred             HHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhc--c----
Confidence            4444 4445678999999999998887644 3445677889999998 9999999999999999998887611  0    


Q ss_pred             CCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHH-Hhhhh
Q 008623          127 CHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALI-ASSVL  205 (559)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i-gp~i~  205 (559)
                                 .-..+.+.+.+.|++.|+|.+...+....++.++||++       |+++.++...+.++|+.+ +++..
T Consensus       115 -----------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207        115 -----------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------RGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             -----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       00135788899999999999988888888899999843       899999999999999975 55555


Q ss_pred             hhhccccCchhhhHHHHHHHHHH
Q 008623          206 VWIQDNEGWGWGFGIPAVAMAIA  228 (559)
Q Consensus       206 ~~l~~~~g~~~~f~i~~~~~~i~  228 (559)
                      +++.  .+|+..|++.++..++.
T Consensus       177 ~l~~--~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        177 AFFS--DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHH--HhHHHHHHHHHHHHHHH
Confidence            5554  35777777666544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.43  E-value=1.1e-12  Score=142.34  Aligned_cols=177  Identities=12%  Similarity=0.038  Sum_probs=133.9

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +.+|.+.+..++....++++..++|.|+++++|++..+++.......++..++.+++|+++||+ |||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4578888888888888889999999999999999999999999999999999999999999999 998877665444333


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.....+..                     ..+.....+.+++.|++.............|.+|++.      |+++.++
T Consensus       337 ~~~~~~~~~---------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi  389 (467)
T PRK09556        337 IFTLGVYQH---------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGI  389 (467)
T ss_pred             HHHHHHHHh---------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHH
Confidence            322222210                     0234445566666665443322223356679999887      9999999


Q ss_pred             hhHHHhH-HHHHHhhhhhhhcc------------ccCchhhhHHHHHHHHHHHHHHHh
Q 008623          190 FYFSINI-GALIASSVLVWIQD------------NEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       190 ~~~~~~i-G~~igp~i~~~l~~------------~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      .+...++ |+.++|.+.|++.+            ..||+..|.+.+++.+++.+..+.
T Consensus       390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            9999997 77999999999999            578999998887777666555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=1.2e-12  Score=136.90  Aligned_cols=166  Identities=18%  Similarity=0.139  Sum_probs=129.5

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .++......++....++.+..++|.|+++++|.+..+.+.+.....+...++.++.|+++||+ |||+.++.+..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            466667777778888888889999999999999999999999999999999999999999998 9999887655443332


Q ss_pred             H-HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          111 M-TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       111 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      . .......  .                  ..+.+.+.+..++.+++.+...+...+++.|.+|+++      |+++.++
T Consensus       299 ~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~  352 (394)
T TIGR00883       299 AVPLLMALL--D------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASL  352 (394)
T ss_pred             HHHHHHHHh--c------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeee
Confidence            2 2221110  0                  1234555666777888888888889999999999987      8999998


Q ss_pred             -hhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHH
Q 008623          190 -FYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAV  223 (559)
Q Consensus       190 -~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~  223 (559)
                       ++.+..+|..++|.++|++.+..| |+..++..+.
T Consensus       353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence             455667899999999999999888 8776665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=2.1e-12  Score=134.20  Aligned_cols=170  Identities=15%  Similarity=0.090  Sum_probs=134.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |..+.+....++..........+.+.|. +++|.+..+.+.+.....+...++.++.|+++||+ |||+.+..+.++..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            3455555555555555555556677775 56889998999999999999999999999999998 999999998888777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+.....   +.                  .+...++...++.+++.+...+..+++..|.+|+++      |++..++
T Consensus       283 ~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~  335 (377)
T TIGR00890       283 GMAAMLFI---PM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGF  335 (377)
T ss_pred             HHHHHHHc---cc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHH
Confidence            77666543   11                  122334455667788888877888889999999887      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA  228 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~  228 (559)
                      ++...++|..++|.+.|++.+..||++.|.+.+++.+++
T Consensus       336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            999999999999999999999999999998877655544

>PRK09952 shikimate transporter; Provisional

Probab=99.41  E-value=2.5e-12  Score=138.24  Aligned_cols=183  Identities=14%  Similarity=0.054  Sum_probs=131.0

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      ++++.........++....+|....++|.|+++.+|++......+.....+...++.++.|+++||+ ||||+++.+.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3444333334456677788898999999999999999987766666666777788899999999998 999998888766


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+.+.....  .                 ......+.+..++.+++.+...+..+++++|.+|.+.      |+++
T Consensus       326 ~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg  380 (438)
T PRK09952        326 GTLSAFPFFMALE--A-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSG  380 (438)
T ss_pred             HHHHHHHHHHHHH--c-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHH
Confidence            5544433322210  0                 1223334444556677777777788899999999986      8888


Q ss_pred             hhhhh-HHHhHHHHHHhhhhhhhcccc--CchhhhHHHHHHHHHHHHHHHhc
Q 008623          187 FNWFY-FSINIGALIASSVLVWIQDNE--GWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       187 ~~~~~-~~~~iG~~igp~i~~~l~~~~--g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      .++.+ .+..+|+.++|.+.+++.+..  +|..++.+.+++.+++.+..+..
T Consensus       381 ~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        381 AGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            88844 445689999999999998744  47877777776666666655543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.41  E-value=3.8e-11  Score=129.46  Aligned_cols=150  Identities=14%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             hhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccc
Q 008623           58 KHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQ  137 (559)
Q Consensus        58 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (559)
                      ++++|+...+.+.+.+++.+++.++.+++|.+.||+ .-.+.+....+...+-.++....                    
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------------------  131 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------------------  131 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            467888888999999999999999999999999998 86666666555544444343333                    


Q ss_pred             cCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhh------ccc
Q 008623          138 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI------QDN  211 (559)
Q Consensus       138 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l------~~~  211 (559)
                         .+.+.+++.|++.|+..+..+|+...+++.++.+++      |+.-+++++...++|.++|.+++..+      ...
T Consensus       132 ---~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  132 ---HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             ---hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence               467889999999999999999999999999999998      99999999999999999999998875      345


Q ss_pred             cCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          212 EGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       212 ~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      .||||.|++.++++++..+..++..+
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEec
Confidence            68999999999877666555544443

>PRK03699 putative transporter; Provisional

Probab=99.39  E-value=3.8e-12  Score=134.82  Aligned_cols=170  Identities=14%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +.++.+.+..++.....+++..++|.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4556666677777778888899999999999999999999999999999999999999999998 999988877766555


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ........                       .+.....+..++.|++.+...+...+...|..|++       +++..++
T Consensus       284 ~~~~~~~~-----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~  333 (394)
T PRK03699        284 LMYLFVNT-----------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNF  333 (394)
T ss_pred             HHHHHHHc-----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHH
Confidence            44443322                       22334445566778777777777777777777644       4566788


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~  230 (559)
                      .+.+.++|+.++|.+.|++.+..|++.++++.++..+++.+
T Consensus       334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            88888999999999999999999999998877766555544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.6e-13  Score=130.33  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=123.3

Q ss_pred             chhhHhhHHHHHHHHHHhhh--hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMS--TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~--~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      ++..+.+..+...-+|+..-  .-+..+++.+.+...++..++.+.++.-..+.+.++|++.||.+|-|...++-++...
T Consensus        42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            44555555554444444432  3466777777777888888999999999999999999999999898887777777667


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+..+.-.                    ..+..|+...+|++.|+|.-........+...+|..+|      ....+|
T Consensus       122 ~GqliFa~Gg--------------------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfG  175 (459)
T KOG4686|consen  122 LGQLIFAAGG--------------------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFG  175 (459)
T ss_pred             HHHHHHHhch--------------------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhh
Confidence            7776665321                    12568899999999999999888899999999999887      899999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccC
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEG  213 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g  213 (559)
                      ++.....+|...-..+.+++.+..+
T Consensus       176 lqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  176 LQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHhhceeeeeecHHHHHHHH
Confidence            9999999999888888888877654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.37  E-value=7.2e-12  Score=130.87  Aligned_cols=172  Identities=13%  Similarity=0.047  Sum_probs=131.3

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      .+.+....++..........++|.|+++++|.++.+.+.+.+...+...++.+++|++.||+ |||+++..+.+...+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence            34344444444444455567789999999999999999888887777888889999999998 99999888776554444


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      ......                       ++.+.+.+.+.+.|++.+...+....+..|..|++       ++++.++++
T Consensus       280 ~~~~~~-----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~  329 (375)
T TIGR00899       280 TGLAAD-----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYT  329 (375)
T ss_pred             HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHH
Confidence            333322                       23555666677788888877777778888888764       568999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ...++|..++|.+.|++.+..||+..|.+.+++.+++.+...+
T Consensus       330 ~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       330 NTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999899999999888777766665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.36  E-value=1.2e-11  Score=127.03  Aligned_cols=172  Identities=20%  Similarity=0.264  Sum_probs=149.0

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhH-HHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYW-TIAIFSIIYVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~  109 (559)
                      .++...+..++..........+++.|..+.+|.+..+.+.+.....+...++.++.|++.||+ |||+ .+..+.++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            344555566677777777888899999888899999999999999999999999999999998 9999 99989888888


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+.....                       .+.+...+..++.+++.+...+...+++.|..|+++      |++.+++
T Consensus       255 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  305 (352)
T cd06174         255 GLLLLALA-----------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGL  305 (352)
T ss_pred             HHHHHHHh-----------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHH
Confidence            87777654                       336667788899999999999999999999999876      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      .+...++|..++|.+.+.+.+..+|+..+.+.++..+++.+..
T Consensus       306 ~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         306 FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998999999998887776666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.36  E-value=7.1e-12  Score=132.66  Aligned_cols=167  Identities=10%  Similarity=0.100  Sum_probs=130.8

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhh
Q 008623           39 ECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA  118 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  118 (559)
                      ..+...+++....+++.|+.+ .|.  .+.+...+.+.++..++.++.|++.||+ ||||.+..+.++..++.+..... 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-  299 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh-
Confidence            344455666677788888864 455  3456666778888889999999999998 99999988887777776665543 


Q ss_pred             ccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHH
Q 008623          119 SVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA  198 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~  198 (559)
                                            .+.+.+.+.+++.|++.+...+.......|..|+++      |+++.++++...++|.
T Consensus       300 ----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        300 ----------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSL  351 (399)
T ss_pred             ----------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence                                  234556677888999988888877777888888776      9999999999999999


Q ss_pred             HHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccc
Q 008623          199 LIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       199 ~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                      .++|.+.|++.+..||++.|.+.+++.+++++..+...++
T Consensus       352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999998887777776665554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=5e-12  Score=135.14  Aligned_cols=179  Identities=11%  Similarity=0.013  Sum_probs=135.0

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCC--------hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQS--------SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIF  103 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~  103 (559)
                      ++..++..++..........+++.|+++ .|.+        .+..+...+...+...++.++.|+++||+ |||+++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~  287 (418)
T TIGR00889       210 MAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS  287 (418)
T ss_pred             eeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence            4555555555555555555777888754 4543        35668888889999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcc
Q 008623          104 SIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK  183 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (559)
                      .++..++........  +                 ...+.+.+++.+++.|++.+...+....++.|.+|+++      |
T Consensus       288 ~~~~~v~~~l~~~~~--~-----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~  342 (418)
T TIGR00889       288 LVAWALRFGFFAYGD--P-----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------R  342 (418)
T ss_pred             HHHHHHHHHHHHHcC--c-----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            988777765554421  0                 00124556677888999988888888899999999887      9


Q ss_pred             ccchhhhh-HHHhHHHHHHhhhhhhhccc------cCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          184 SSFFNWFY-FSINIGALIASSVLVWIQDN------EGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       184 ~~~~~~~~-~~~~iG~~igp~i~~~l~~~------~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      ++++++.+ ....+|..+||.++|++.+.      +||+.+|.+.++..+++.++.++..+
T Consensus       343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999987 56789999999999999887      46999998887766666555544444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=9.1e-12  Score=132.06  Aligned_cols=171  Identities=9%  Similarity=-0.020  Sum_probs=129.7

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      +.+....++.....+.+..++|.|+++ .|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            344444555556677778889999875 799999999999999999999999999999998 999998876665555544


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      .+...                       .+.+.+.+..++.|++.++..+...++..|.+|+++      |+++.++.+.
T Consensus       301 ~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~  351 (406)
T PRK11551        301 ALAAA-----------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVA  351 (406)
T ss_pred             HHHhc-----------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHH
Confidence            44332                       223445555666777777777888889999999987      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHh
Q 008623          193 SINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      ..++|..++|.+.|++.+..+ |...+.+.....+++++..+.
T Consensus       352 ~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        352 VGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988654 555555555555555444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.35  E-value=2.4e-11  Score=128.72  Aligned_cols=178  Identities=11%  Similarity=-0.001  Sum_probs=136.6

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      ..|.+.+..++....++++..++|.|+++ +|.+..+++...+.+.++..++.++.|++.||+ |||+.++.+..+..++
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~  283 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG  283 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence            35666666777788888999999999976 799999999999999999999999999999998 9999998887776666


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      ...+...   +                   .+...+.  ..+.|++.+...|.......+..++++     .+++.+++.
T Consensus       284 ~~~~~~~---~-------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~  334 (393)
T PRK09705        284 FCGFIWL---P-------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFM  334 (393)
T ss_pred             HHHHHHc---c-------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHH
Confidence            5544322   1                   1111121  235677777777877777778876432     389999999


Q ss_pred             hHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhccccc
Q 008623          191 YFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGTRLF  239 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~  239 (559)
                      +...++++.++|.+.|++.|..| |...|.+.+++.++..+..+...++.
T Consensus       335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999876 78888877766666655555555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.34  E-value=9.2e-12  Score=131.84  Aligned_cols=168  Identities=13%  Similarity=0.077  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhcCCChh---hhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHh
Q 008623           39 ECCERLAYYGMSTNLVRYFKHQLDQSSS---TASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLT  115 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  115 (559)
                      .++.......+.++++.|+.+..+....   ..+.+.....+...++.++.|+++||+ |||+.+..+.+...++.+...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            3444445555667788888765443221   245556667778888899999999998 999999988877666665554


Q ss_pred             hhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHh
Q 008623          116 VTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSIN  195 (559)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  195 (559)
                      ..                       .+.+.+.+.+++.|++.+...+...+++.+..|++.      |++.+++++...+
T Consensus       307 ~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~  357 (408)
T PRK09874        307 FV-----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRD  357 (408)
T ss_pred             Hh-----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHH
Confidence            33                       235667778888999999988888888888888776      8999999999999


Q ss_pred             HHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          196 IGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       196 iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      +|..+||.++|++.+..||+..|++.+++.+++.+..+...
T Consensus       358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877777666554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.34  E-value=8.8e-12  Score=133.11  Aligned_cols=172  Identities=12%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhc---CCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQL---DQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      ++.+....++....+.....++|.|+.+.+   +.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..
T Consensus       225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~  303 (420)
T PRK09528        225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMA  303 (420)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHH
Confidence            444444444444444455556777776543   56667788999999999999999999999999 99999999888888


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.++..+.                       .+++.+.+.+.+.+++.+...+....++.|.+|++.      |++..+
T Consensus       304 ~~~~l~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~  354 (420)
T PRK09528        304 VRIIGSGFA-----------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYL  354 (420)
T ss_pred             HHHHHHHhc-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeee
Confidence            777776654                       346667777888888877776777788889998876      777776


Q ss_pred             h-hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          189 W-FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       189 ~-~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      . ++...++|..++|.+.|++.|..||+.+|.+.+++.++..+..+
T Consensus       355 ~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        355 VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            6 67788999999999999999999999999987766555544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.33  E-value=1.7e-11  Score=129.26  Aligned_cols=169  Identities=14%  Similarity=-0.042  Sum_probs=142.8

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+|..+...++...+.+.+..+.|.|+++ +|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            456777777788888888888999999965 899999999999999999999999999999998 999999999998888


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ........                       ++.+.+++.+.+.|++.+...+....++.+. |+++      |+++.++
T Consensus       283 ~~~~~~~~-----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~  332 (382)
T TIGR00902       283 RWAIIGAI-----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQAL  332 (382)
T ss_pred             HHHHHHhH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHH
Confidence            87777655                       4577788889999999999999999999987 7765      8888998


Q ss_pred             hh-HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          190 FY-FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       190 ~~-~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      ++ ....+|..++|.++|++.|..|+ ..|.+.+...++++++
T Consensus       333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            76 46789999999999999999986 5566666655555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=2.3e-11  Score=126.79  Aligned_cols=179  Identities=13%  Similarity=-0.010  Sum_probs=129.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHH-HHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTI-AIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~~  108 (559)
                      |.++..++..++.....+.+..++|.|+++.+|.+..+.+.+.....+...++.+++|+++||+ |||+.. ........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4567777888888888888999999999999999999999999999999999999999999998 988611 11111111


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+..........                ...+.+.......+.+.+.+ ..+...++..|.+|+++      |+++.+
T Consensus       294 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~  350 (399)
T TIGR00893       294 IAGLVLSLLMFATN----------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGG  350 (399)
T ss_pred             HHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHH
Confidence            11111111000000                00123333333333333433 67888999999999987      999999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHH
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~  232 (559)
                      +.+...++|..++|.+.|++.+..| |+..|.+.++..+++.+..
T Consensus       351 ~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       351 LINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988 9999888777666655544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.30  E-value=1.9e-11  Score=131.23  Aligned_cols=181  Identities=12%  Similarity=0.029  Sum_probs=124.4

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccch--hHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGR--YWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~~~~~~~~~  107 (559)
                      +.+|.+.+..++....++++..++|.|+++++|++..+++...+.+.++..++.+++|+++||+.++  ++......+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            3466666667777777778888999999888999999999999999999999999999999997222  22222222222


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .+..+.+...   +.                  .+.....+..+++|++.............|.+|+++      |+++.
T Consensus       323 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  375 (434)
T PRK11663        323 LLSVGSLWLM---PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAAT  375 (434)
T ss_pred             HHHHHHHHHc---cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHH
Confidence            2222222111   11                  122222233333443322222223456678888776      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      ++.+...++|+.++|.+.|++.+..||+..|++.+++.+++.+..+...|
T Consensus       376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998888777666655544443

>TIGR00897 2A0118 polyol permease family

Probab=99.30  E-value=2.6e-11  Score=128.76  Aligned_cols=177  Identities=13%  Similarity=-0.010  Sum_probs=130.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHH-HHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIA-IFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~  108 (559)
                      |.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            34677777788888889999999999985 5899999999999999999999999999999998 9888764 3333333


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+.+.....                  ....+.+...+..++.|++.+...+. .....|..|+ +      |+++++
T Consensus       300 ~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~-~------~g~~~g  353 (402)
T TIGR00897       300 IFTLALYYIPQ------------------HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAPK-H------KGAAMS  353 (402)
T ss_pred             HHHHHHHHHHH------------------ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcc-h------hHHHHH
Confidence            33333322210                  00123445556667777777765443 4455665543 4      899999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHh
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +.+...++|+.++|.+.+.+.+..||...|++.+++.+++.+...+
T Consensus       354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.29  E-value=2.2e-11  Score=137.54  Aligned_cols=134  Identities=11%  Similarity=0.059  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHH
Q 008623           71 NVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVAL  150 (559)
Q Consensus        71 ~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (559)
                      ......++..++.+++|+++||+ |||++++.+.++.+++.+++++.                       .+...+++.+
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~-----------------------~s~~~ll~~~  655 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG-----------------------NSESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH-----------------------ccHHHHHHHH
Confidence            34556678889999999999998 99999999988888887777655                       2234455666


Q ss_pred             HHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623          151 YLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       151 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~  230 (559)
                      ++.+++.++..+...++++|++|.+.      |++++++.+....+|+++||.+++.+.+. +...+|++.+++.+++.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l  728 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL  728 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            77777777778888999999999987      99999999999999999999999988764 456677777766666655


Q ss_pred             HHHhc
Q 008623          231 SFFSG  235 (559)
Q Consensus       231 ~~~~~  235 (559)
                      +..+.
T Consensus       729 l~~~L  733 (742)
T TIGR01299       729 LALKL  733 (742)
T ss_pred             HHHhC
Confidence            54443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.28  E-value=1.5e-11  Score=131.15  Aligned_cols=157  Identities=8%  Similarity=-0.080  Sum_probs=127.1

Q ss_pred             HHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 008623           46 YYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP  125 (559)
Q Consensus        46 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (559)
                      ..++..++|.|+++.+|.+..+.+++.+...++..++.++.|++.||. ++++.+..+.++..++.+.+.+.        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            456677899999988999999999999999999999999999999997 88888888877766666655433        


Q ss_pred             CCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          126 VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                                     ++.+...+..++.|++.+...+...+++.|..|++.      |++++++++...++|..+||.+.
T Consensus       310 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~  368 (417)
T PRK10489        310 ---------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALL  368 (417)
T ss_pred             ---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHH
Confidence                           234555666777888887766777788899999886      99999999999999999999999


Q ss_pred             hhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          206 VWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       206 ~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      |++.+..|++..+.+.+.+.++..+..
T Consensus       369 G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        369 GGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            999999998888876665544433333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.28  E-value=8.6e-11  Score=124.14  Aligned_cols=174  Identities=12%  Similarity=-0.032  Sum_probs=132.7

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      ++......++.....++...+++.|++++.|.+..+.+.+.....+...++.++.|+++||+ |||+.. .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            44455555566666666777888899888999999999999999999999999999999998 987654 4444333333


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      .......                      .+.+.+.+..++.|++.+...+...+.+.+..|+ +      |++++++++
T Consensus       285 ~~l~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~  335 (390)
T PRK03545        285 LLLLPAA----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMALFS  335 (390)
T ss_pred             HHHHHHh----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHHHH
Confidence            3322110                      2355566677788888877777777778787764 3      789999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      ...++|..+||.++|++.+..|++..|.+.+.+.+++++......
T Consensus       336 ~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        336 GIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999988877777766655544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.28  E-value=1.4e-11  Score=132.97  Aligned_cols=176  Identities=14%  Similarity=0.105  Sum_probs=122.8

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccch--hHH-HHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGR--YWT-IAIFSII  106 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~-~~~~~~~  106 (559)
                      +.+|...+..++.....++...++|.|++++.|++..+++.+...+.+...++.+++|+++||+ ++  |+. .+....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4467777777777778888889999999999999999999998889999999999999999997 53  332 2222233


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+...+.   +.                  .+.+...+..++.|.+.....+....+..|.+|++.      |+++
T Consensus       332 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  384 (452)
T PRK11273        332 VTIATIVYWLN---PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  384 (452)
T ss_pred             HHHHHHHHHHh---cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhH
Confidence            33333322221   10                  123333333444444332222223345678999886      9999


Q ss_pred             hhhhhHHHhHHHHH-HhhhhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          187 FNWFYFSINIGALI-ASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       187 ~~~~~~~~~iG~~i-gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      +++.+...++|+.+ +|.+.|++.+..||+..|.+.++..+++++...
T Consensus       385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            99999988898765 799999999999999999877776666655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=3.2e-11  Score=129.44  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH-HH
Q 008623           36 LGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT-FL  114 (559)
Q Consensus        36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~-~~  114 (559)
                      +...++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.++.+.+...+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444556677888889999999988999999999888888899999999999999998 999988876544332221 11


Q ss_pred             hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHH
Q 008623          115 TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI  194 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  194 (559)
                      ....  .                  ..+.....+..++.+++.+...+....+..|.+|++.      |+++.++.+...
T Consensus       323 ~~~~--~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~  376 (434)
T PRK15075        323 SWLV--A------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLA  376 (434)
T ss_pred             HHHH--c------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHH
Confidence            1110  0                  0122223333444556666666666778899999987      999999855444


Q ss_pred             -hHHHHHHhhhhhhhccccCch
Q 008623          195 -NIGALIASSVLVWIQDNEGWG  215 (559)
Q Consensus       195 -~iG~~igp~i~~~l~~~~g~~  215 (559)
                       .+++.++|.+.+++.+..|++
T Consensus       377 ~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        377 TAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHhhhHHHHHHHHHHhcCCc
Confidence             456888999999999988854

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.27  E-value=7.8e-11  Score=124.15  Aligned_cols=159  Identities=13%  Similarity=0.179  Sum_probs=121.8

Q ss_pred             HHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 008623           41 CERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV  120 (559)
Q Consensus        41 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  120 (559)
                      .....+.....++|.|+++ .|.+..+.+.+.+...+...++.++.|++.||+ |||+++..+..+..++.+... .   
T Consensus       211 ~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~---  284 (381)
T PRK03633        211 ISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S---  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h---
Confidence            3334444455678989875 699999999999999999999999999999999 999998888777666554332 1   


Q ss_pred             CCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHH
Q 008623          121 SGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALI  200 (559)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i  200 (559)
                                            .......+++.|++.+...|...+.+.|..|+++      ++...+.++...++|..+
T Consensus       285 ----------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~i  336 (381)
T PRK03633        285 ----------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLL  336 (381)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHH
Confidence                                  1112334556676666777888888899988765      677777778888999999


Q ss_pred             HhhhhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          201 ASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       201 gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      ||.++|++.|+.||++.|.+.+.+.++..+..+
T Consensus       337 gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        337 GPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987776665554433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.27  E-value=4.6e-11  Score=122.86  Aligned_cols=185  Identities=14%  Similarity=0.053  Sum_probs=148.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |..|.+.+..+...-++-++..++|.|+++++|.+..+++.+...+.+...+..+.+|+++||+ |.+|+++.....+++
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~  296 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL  296 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999 999999888887777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +........  +.              +....+....+...+..++..|.-+.....++...+|++       -+...++
T Consensus       297 ~~~~l~~~~--~~--------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~  353 (417)
T COG2223         297 AAALLSLFL--TG--------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGI  353 (417)
T ss_pred             HHHHHHccc--cc--------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHH
Confidence            777665541  11              001123444444455566667777777888888888875       5888999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhcccc
Q 008623          190 FYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                      .....++|+..-|...+...+..| +...|++.....+++.++.+....+
T Consensus       354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888888 8888888877777777666555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.27  E-value=4.1e-10  Score=115.98  Aligned_cols=128  Identities=13%  Similarity=-0.002  Sum_probs=89.2

Q ss_pred             hhhHHHHHhhhcCC---Ch----hhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHH-HHHHHHHHHHHHHHhhhhccC
Q 008623           50 STNLVRYFKHQLDQ---SS----STASKNVLDWSGTCYITPLIGAFLADAYLGRYWTI-AIFSIIYVIGMTFLTVTASVS  121 (559)
Q Consensus        50 ~~~l~~yl~~~lg~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~~~~~~~~~~~~~~~  121 (559)
                      ..++|.|+++..+-   ++    +-.+...++..+...+..|+-|.++|+. |+||-. -...++.++..+.+.++   |
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i---~  110 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI---P  110 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh---C
Confidence            45788898877654   33    3345666777888899999999999998 865544 44555566666666655   2


Q ss_pred             CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHH
Q 008623          122 GLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIA  201 (559)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~ig  201 (559)
                                       +..+.+...+...+..++..+......+++.+..++++      .++..+.-+....+|+.+.
T Consensus       111 -----------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~  167 (438)
T COG2270         111 -----------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVIL  167 (438)
T ss_pred             -----------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHH
Confidence                             12345556666677788888888899999999999876      5556555555666666655


Q ss_pred             hhh
Q 008623          202 SSV  204 (559)
Q Consensus       202 p~i  204 (559)
                      -++
T Consensus       168 li~  170 (438)
T COG2270         168 LIF  170 (438)
T ss_pred             HHH
Confidence            444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.26  E-value=1e-09  Score=113.32  Aligned_cols=343  Identities=12%  Similarity=0.119  Sum_probs=203.8

Q ss_pred             HHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccc-----hhHHHHH-HHHHHHHHHHHHhhhhccCCCCCCCCC
Q 008623           56 YFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLG-----RYWTIAI-FSIIYVIGMTFLTVTASVSGLKPVCHG  129 (559)
Q Consensus        56 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (559)
                      -+..+++.+..-.+.+++..++... ..+..|+.+|+. +     ||--+++ |.++...+......+...-.       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~-------   75 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA-------   75 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            3556899999888888888877665 599999999998 6     5555444 45555555544443321111       


Q ss_pred             CCCCcccc--cCcchhH--HHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          130 PRGEETCQ--VTDAQSA--TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       130 ~~~~~~~~--~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                          +..+  ......+  ...+...+.|+|.+....+..++++|..|+++      |++..++.+.+.-+|.+++..+.
T Consensus        76 ----~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen   76 ----ESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             ----ccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence                0000  0111222  34455566788888888899999999999987      99999999999999999999999


Q ss_pred             hhhccccCch----hhhHHHHHHHHHHHHHHHhccccccccC-CCCChhHHHHHHHHHHHhhccccCCCccchhhhcccc
Q 008623          206 VWIQDNEGWG----WGFGIPAVAMAIAVVSFFSGTRLFRNQK-PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADA  280 (559)
Q Consensus       206 ~~l~~~~g~~----~~f~i~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  280 (559)
                      +.+.+.+...    ..-..+.+..++.++..|-..++.++.. ..+++..                              
T Consensus       146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~------------------------------  195 (403)
T PF03209_consen  146 GRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRP------------------------------  195 (403)
T ss_pred             HHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCc------------------------------
Confidence            9888876522    1111222333344444443333222111 0000000                              


Q ss_pred             cccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhcc
Q 008623          281 ESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQG  360 (559)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (559)
                                      .+.+.                |+...  ...+.++++..  +++....+++....+..+     
T Consensus       196 ----------------~f~~a----------------~~~~~--~~~~a~~f~~f--l~l~t~a~~~QD~iLEPy-----  234 (403)
T PF03209_consen  196 ----------------PFREA----------------WRQVW--ASPQARRFFVF--LFLGTLAFFMQDVILEPY-----  234 (403)
T ss_pred             ----------------cHHHH----------------HHHHH--hCCChhHHHHH--HHHHHHHHHhhHHHcCCc-----
Confidence                            00000                00000  00112222211  222333333332222221     


Q ss_pred             ccccCCCCCccceeCccc---cccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008623          361 ERMDTHVGNSSFKIPPAS---LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLEL  437 (559)
Q Consensus       361 ~~~~~~~g~~~~~~~~~~---~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~  437 (559)
                             |.+-|.++++.   +++.-..+.++...+.+++..   +|       .++.+....|...+++++..+.....
T Consensus       235 -------gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  235 -------GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP  297 (403)
T ss_pred             -------hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence                   11112233322   333344555555555555332   22       23334445666666666665544321


Q ss_pred             HHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008623          438 IRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV  517 (559)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v  517 (559)
                      .                 .+.+.+....+++|++.++......+.+.+..+++..|..+|.|...+.++..++.+++|.+
T Consensus       298 ~-----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  298 L-----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             c-----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1                 24567788889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhc
Q 008623          518 TSIST  522 (559)
Q Consensus       518 ~~~~~  522 (559)
                      .|...
T Consensus       361 ~D~~~  365 (403)
T PF03209_consen  361 RDLVR  365 (403)
T ss_pred             HHHHH
Confidence            88754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.26  E-value=5.7e-11  Score=127.43  Aligned_cols=177  Identities=12%  Similarity=0.016  Sum_probs=114.1

Q ss_pred             hhhHhhHHH-HHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           32 CPFILGNEC-CERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        32 ~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .+.+....+ +....+|++..++|.|+++++|++..+.+...+...+...++.++.|+++||+ |||+.++.+.++..+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~  322 (432)
T PRK10406        244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALF  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344444333 44778889999999999999999999999888888888889999999999998 9999887766543333


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+......  ..                 ..+....+....+..++.+...+....+.+|.+|++.      |++++|+.
T Consensus       323 ~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~  377 (432)
T PRK10406        323 TVPILSAL--QN-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLS  377 (432)
T ss_pred             HHHHHHHH--Hc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHH
Confidence            22221110  00                 0112211111122222233333456678899999987      99999997


Q ss_pred             hHHHhH-HHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhc
Q 008623          191 YFSINI-GALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       191 ~~~~~i-G~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      +...++ ++..+|.+.+++. ..| |...+++.++..+++++..++.
T Consensus       378 ~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        378 YAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            766554 4555888777664 445 5555665555555555554443

>PRK12382 putative transporter; Provisional

Probab=99.26  E-value=4.2e-11  Score=126.47  Aligned_cols=163  Identities=10%  Similarity=0.146  Sum_probs=129.1

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhc
Q 008623           40 CCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTAS  119 (559)
Q Consensus        40 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  119 (559)
                      ++....+..+..+.+.|+++ .|.+  +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.+...+.  
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--  299 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--  299 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc--
Confidence            34445566667788888865 4554  345566677778888999999999998 99999998888777776665543  


Q ss_pred             cCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHH
Q 008623          120 VSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGAL  199 (559)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  199 (559)
                                           .+.+...+..++.|++.+...+...+.+.|.+|+++      |++++++++...++|..
T Consensus       300 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~  352 (392)
T PRK12382        300 ---------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYG  352 (392)
T ss_pred             ---------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHH
Confidence                                 234556667788888888878888888889998876      99999999999999999


Q ss_pred             HHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          200 IASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       200 igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      ++|.+.|++.+..||+..|.+.+.+.+++.+..++.
T Consensus       353 ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        353 VSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998887777766655443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.25  E-value=1.1e-11  Score=109.59  Aligned_cols=132  Identities=15%  Similarity=0.230  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHH
Q 008623           73 LDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYL  152 (559)
Q Consensus        73 ~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  152 (559)
                      +.+.++..++.++.|+++||+ |||+.++.+..+..++.+.....                       .+.+.+.+.+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~   60 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-----------------------SNITVLIIARFL   60 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHH
Confidence            345677888999999999998 99999999988877777766554                       346667788899


Q ss_pred             HHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          153 IALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       153 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      .|++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+++.+..+|++.+.+.+...++..+..
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            999999888999999999999887      99999999999999999999999999988899999888776666555544


Q ss_pred             Hh
Q 008623          233 FS  234 (559)
Q Consensus       233 ~~  234 (559)
                      ..
T Consensus       135 ~~  136 (141)
T TIGR00880       135 AF  136 (141)
T ss_pred             hh
Confidence            44

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.25  E-value=1e-10  Score=127.43  Aligned_cols=148  Identities=15%  Similarity=0.132  Sum_probs=113.8

Q ss_pred             hhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 008623           48 GMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVC  127 (559)
Q Consensus        48 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (559)
                      ....++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..++.+.....   +      
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI---G------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc---c------
Confidence            4567899999889999999999999999999999999999999998 99999888776555444333222   1      


Q ss_pred             CCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhh
Q 008623          128 HGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVW  207 (559)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~  207 (559)
                                  ..+.+...+..++.+....+..+..++++.|.+|+++      |++.+++++...++|+.+||++.|+
T Consensus       363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~  424 (496)
T PRK03893        363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGAL  424 (496)
T ss_pred             ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHH
Confidence                        1223333333343333333345667778899999876      9999999999999999999999999


Q ss_pred             hccccCchhhhHHHHH
Q 008623          208 IQDNEGWGWGFGIPAV  223 (559)
Q Consensus       208 l~~~~g~~~~f~i~~~  223 (559)
                      +.+..||+..+...+.
T Consensus       425 l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        425 IAQRLDLGTALASLSF  440 (496)
T ss_pred             HhccCChHHHHHHHHH
Confidence            9999999887755443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.24  E-value=5.3e-11  Score=127.97  Aligned_cols=182  Identities=13%  Similarity=0.047  Sum_probs=123.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +.+|...+..++.....+++..++|.|+++..|++..+++++...+.+...++.+++|+++||+ |+++....+..+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3466776777777777888999999999998999999999999999999999999999999998 754433333322221


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ..+........+.                  .+.+...+..++.|++..+..........|.+|+++      |+++.++
T Consensus       330 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  385 (438)
T TIGR00712       330 VTIAVIVYWMNPA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF  385 (438)
T ss_pred             HHHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhh
Confidence            1111111000010                  122323333344444333222222345678889876      9999999


Q ss_pred             hhHHHhHHH-HHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          190 FYFSINIGA-LIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       190 ~~~~~~iG~-~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      .+...++|+ .++|.+.|.+.+..||..+|.+.+...+++++..+...
T Consensus       386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            998888875 68999999999999999998877766656655554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.22  E-value=9e-11  Score=123.60  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=122.1

Q ss_pred             HhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHH
Q 008623           35 ILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFL  114 (559)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  114 (559)
                      +.....+.+...+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..+.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence            33344444555566778899999999999999999999999999999999999999998 99999888776543322222


Q ss_pred             hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHH
Q 008623          115 TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI  194 (559)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  194 (559)
                      ...   .                   .+.+.+.+..++.+++.+...+..++++.|.+|+++      |++++++.+...
T Consensus       322 ~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~  373 (405)
T TIGR00891       322 FAI---G-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLG  373 (405)
T ss_pred             HHh---C-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHH
Confidence            111   0                   233444555566666666777788889999999887      999999999999


Q ss_pred             hHHHHHHhhhhhhhccccC-chhhhHH
Q 008623          195 NIGALIASSVLVWIQDNEG-WGWGFGI  220 (559)
Q Consensus       195 ~iG~~igp~i~~~l~~~~g-~~~~f~i  220 (559)
                      ++|+.++|++.|++.+..| |+..+..
T Consensus       374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       374 NLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999999988 8766554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.3e-10  Score=112.78  Aligned_cols=180  Identities=13%  Similarity=0.092  Sum_probs=140.1

Q ss_pred             ccCCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHH
Q 008623           24 TKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIF  103 (559)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~  103 (559)
                      ......+.+|++.+..++.....+-+...-|.++++.+|+|+.+++.+.+.......+..|+.|.++||+ ||+-..+.+
T Consensus       258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~  336 (459)
T KOG4686|consen  258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVAS  336 (459)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHH
Confidence            3334456689999999999998888888899999999999999999999999999999999999999999 998766655


Q ss_pred             H-HHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc
Q 008623          104 S-IIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH  182 (559)
Q Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (559)
                      . +....+...+.++                         .+.-+++..++|+.......+.+.+++...|+++      
T Consensus       337 a~~~tl~~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------  385 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------  385 (459)
T ss_pred             HHHHHHHHhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------
Confidence            4 4455565555554                         2234455667777777776677888899999887      


Q ss_pred             cccchhhhhHHHhHHHHHHhhhhhhhccccC---chhhhHHHHHHH-HHHHHHHHhc
Q 008623          183 KSSFFNWFYFSINIGALIASSVLVWIQDNEG---WGWGFGIPAVAM-AIAVVSFFSG  235 (559)
Q Consensus       183 r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g---~~~~f~i~~~~~-~i~~~~~~~~  235 (559)
                      .+++++..+...|+|-.+.|+++|.+.+.-|   |--+|++....+ +..+.+++..
T Consensus       386 LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  386 LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999999999999999999999999988765   444566555444 3333334433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.21  E-value=1.1e-10  Score=127.40  Aligned_cols=179  Identities=12%  Similarity=0.070  Sum_probs=129.0

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHH-HHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVL-DWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .|......++.....+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.++++.++.+++
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            444444455666666667778888988889999999999875 55678999999999999999 9999887766554444


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+.......                   ...+.+.+.+..++..++.|...+...++..+..+++.      +++.+++.
T Consensus       303 ~l~~~~l~~-------------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~  357 (491)
T PRK11010        303 NAGYWLLSI-------------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALL  357 (491)
T ss_pred             HHHHHHHHh-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHH
Confidence            333222110                   00123333334444444444444566788888888886      78889999


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          191 YFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      +...++|..+++.+.|++.+..||+..|.+.+++.+++++.....+
T Consensus       358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998988999999999999999888887777766665543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.7e-10  Score=118.20  Aligned_cols=178  Identities=17%  Similarity=0.123  Sum_probs=145.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +.++..+...++...+.|+..+|+..|+++..|++.+..+++...+.++..++..++|+++||  +.|+++.....+.++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            346888889999999999999999999999999999999999999999999999999999999  788888888777777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ..+.+.+..                      .+.+...+..++.|+...........-.++..|++       +..+.++
T Consensus       289 ~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~sl  339 (394)
T COG2814         289 ALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGSL  339 (394)
T ss_pred             HHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHHH
Confidence            776665541                      33455555556667666655555555555544444       7889999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccc
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                      +..+.|+|..+|..++|.+.++.|+....+..++..++++++.+...++
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998888887776655443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.19  E-value=2.3e-11  Score=128.88  Aligned_cols=193  Identities=15%  Similarity=0.123  Sum_probs=141.5

Q ss_pred             CCCcccCCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhh-hcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccch-h
Q 008623           20 PADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKH-QLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGR-Y   97 (559)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r   97 (559)
                      ...+..+.+||.+++.....+.....++.+.+..-.|+++ +.+-+.+..|++++...++..++.|+.|+...|. |+ |
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k  102 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVK  102 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcc
Confidence            3344456789999999999999999988888888888874 3566777899999999999999999999999998 75 7


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcch
Q 008623           98 WTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADE  177 (559)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~  177 (559)
                      +-++.+.++.++|.++-......|+                  +..+.++++|++.|+|.+.. ...=+|+++....++ 
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d-  162 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED-  162 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc-
Confidence            7777888888888877743323332                  36788999999999998865 455677777776666 


Q ss_pred             HhhhccccchhhhhHHHhHHHHHHhhhhhhhc----ccc---------CchhhhHHHHHHHHHHHHHHHhcccc
Q 008623          178 AEKKHKSSFFNWFYFSINIGALIASSVLVWIQ----DNE---------GWGWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       178 ~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~----~~~---------g~~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                           |.++++....+..+|..+||.+...+.    +.+         -|..+-++.+++.++..+.+.+..++
T Consensus       163 -----R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  163 -----RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             -----hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence                 888888877766777777776554332    110         13445566666666666655555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.19  E-value=6.9e-11  Score=122.92  Aligned_cols=162  Identities=13%  Similarity=0.149  Sum_probs=119.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH--HH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI--IY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~--~~  107 (559)
                      |.++.+.+..++.....+.+..++|.|+++.+|++..+.+.+.....+...++.++.|+++||..+||+..+....  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4567777777777778888889999999999999999999999999999999999999999986234433322211  11


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.......   +                  ..+.....+..++.|+......+....+..|.+|+++      |+++.
T Consensus       296 ~~~~~~~~~~---~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  348 (379)
T TIGR00881       296 IVSLLVYWLN---P------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAA  348 (379)
T ss_pred             HHHHHHHhcC---c------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHH
Confidence            1111111111   1                  1233344455555666555555566678899999887      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhh
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGF  218 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f  218 (559)
                      ++++...++|+.++|.+.|.+.+..||++.|
T Consensus       349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999999998764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.18  E-value=3.9e-10  Score=120.95  Aligned_cols=169  Identities=12%  Similarity=0.023  Sum_probs=120.0

Q ss_pred             HHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 008623           46 YYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP  125 (559)
Q Consensus        46 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (559)
                      ...+..+.|.+ .++.|++..+.+.......+...++.+++|+++||+ |||+.+..+.++.+++.+.+.+......   
T Consensus       300 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  374 (481)
T TIGR00879       300 INAIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV---  374 (481)
T ss_pred             CeehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc---
Confidence            33344445544 457899998888888999999999999999999998 9999999988877777666653211000   


Q ss_pred             CCCCCCCCcccccC---cchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHh
Q 008623          126 VCHGPRGEETCQVT---DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS  202 (559)
Q Consensus       126 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp  202 (559)
                                  ..   ..+...+....++.+.......+....+..|.+|+++      |+++.++.+...++|++++|
T Consensus       375 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~  436 (481)
T TIGR00879       375 ------------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVG  436 (481)
T ss_pred             ------------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHH
Confidence                        00   0022222222222222223344667777899999886      99999999999999999999


Q ss_pred             hhhhhhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          203 SVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       203 ~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      .+.+++.+..+|++.|++.+++.+++.+..++..+
T Consensus       437 ~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       437 FLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence            99999998889999998877766666655544433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=2.3e-10  Score=123.66  Aligned_cols=171  Identities=11%  Similarity=0.011  Sum_probs=134.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc-cchhHHHHHHHHH--
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY-LGRYWTIAIFSII--  106 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~--  106 (559)
                      |.++..+...++...+++....+++.|+++ +|++..+++.+.+...++..++.+++|+++||. .++|+...++...  
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            446666677777778888888899999864 799999999999999999999999999999983 1444444433322  


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+++...                       .+.+.+++.+++.|++.+...+...+++.|.+|+++      +++.
T Consensus       320 ~~l~~ll~~~~-----------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~  370 (455)
T TIGR00892       320 NGLTHLLCALA-----------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSA  370 (455)
T ss_pred             HHHHHHHHHHh-----------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhH
Confidence            22333333222                       345667778889999999988999999999999876      8999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhcccc-CchhhhHHHHHHHHHHHH
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~  230 (559)
                      +++++...++|..+||.++|++.+.. +|++.|++.++..+++.+
T Consensus       371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999877 499999988876665554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.17  E-value=6.5e-10  Score=120.89  Aligned_cols=173  Identities=12%  Similarity=0.019  Sum_probs=115.1

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhH-----HHH--HHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYW-----TIA--IFS  104 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-----~~~--~~~  104 (559)
                      +|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+     ..+  +..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            46555555555555666778899999989999999999999999999999999999999998 8762     222  222


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc
Q 008623          105 IIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS  184 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (559)
                      ++..+..+.+...                       .+.+...+..++.+++.+...+...++..+..|+ +      ++
T Consensus       333 ~l~~i~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g  382 (476)
T PLN00028        333 TLGGVFCIWLGRA-----------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-S------LG  382 (476)
T ss_pred             HHHHHHHHHhccc-----------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-h------ch
Confidence            2211211221111                       2233333444455555444445555666666553 3      89


Q ss_pred             cchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          185 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       185 ~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      ...++.+.+.++|+.++|.+.+ ..+..+|+..|++.+++.+++.+..++.+
T Consensus       383 ~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        383 VISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            9999988888888888886654 33345699999988877777766655544

>PRK10504 putative transporter; Provisional

Probab=99.16  E-value=3.7e-10  Score=122.36  Aligned_cols=158  Identities=9%  Similarity=0.000  Sum_probs=124.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+...+...++...++.....+.|.|++..+|.++.+.+++.....+...++.++.|++.||+ |||+++..+.++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3455666667777777666667788899888999999999998888888888889999999999 999999988887776


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +...+....                    ...+.+.+.+..++.|++.+...+....+..+.+|+++      ++.++++
T Consensus       340 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~  393 (471)
T PRK10504        340 VSLLFMLVA--------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSL  393 (471)
T ss_pred             HHHHHHhcc--------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHH
Confidence            655554331                    01223334445566778888777888888889999876      8999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCc
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGW  214 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~  214 (559)
                      .++..++|..+|+.++|.+.+..|+
T Consensus       394 ~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        394 LSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999988776655

>TIGR01272 gluP glucose/galactose transporter

Probab=99.15  E-value=4.2e-10  Score=115.37  Aligned_cols=161  Identities=13%  Similarity=0.032  Sum_probs=125.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhh--cCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQ--LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      |.+++..+..++....-.++..|++.|+.+.  +|+++.+.+...+.+..+..++.++++++.||+ |+||++..+.++.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            4456666677776666777889999999854  799999999999999999999999999999998 9999988887776


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      +++.++....                       .+.. ......+.|++.+...|...++..+.+|++.       +++.
T Consensus       219 ~~~~~l~~~~-----------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~as  267 (310)
T TIGR01272       219 VLLSIGAALT-----------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGS  267 (310)
T ss_pred             HHHHHHHHHc-----------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence            6665444332                       1111 2234557899999999999999999888753       4444


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV  223 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~  223 (559)
                      ++. ....+|+.+.|.+.|.+.|..|.+.+|++..+
T Consensus       268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            554 56779999999999999999998888875554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=6.3e-10  Score=117.32  Aligned_cols=167  Identities=11%  Similarity=-0.052  Sum_probs=129.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+|..+...++....+.....+++.|++ +.|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+..+.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            44666666666666777777788899985 5899999999999988888888999999999998 999999988887777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+.....                       ++.+.+++..++.|++.+...+....+..+. ++++      +++..+.
T Consensus       283 ~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~  332 (382)
T PRK11128        283 RWGLMGST-----------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQAL  332 (382)
T ss_pred             HHHHHHhh-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHH
Confidence            76655543                       3567777888889999888888888877776 4443      6777887


Q ss_pred             hh-HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHH
Q 008623          190 FY-FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAV  229 (559)
Q Consensus       190 ~~-~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~  229 (559)
                      ++ ....+|..+||.++|.+.|..|+. .++..+++.++++
T Consensus       333 ~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        333 YSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            65 556778899999999999998874 5555555444443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.13  E-value=8.1e-10  Score=113.25  Aligned_cols=81  Identities=15%  Similarity=0.007  Sum_probs=68.6

Q ss_pred             chhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc---------
Q 008623          141 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN---------  211 (559)
Q Consensus       141 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~---------  211 (559)
                      .++..+.++.++.|.|.+...+..++++++..|+++      +++.+++.+.+..+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            467889999999999999999999999999999886      88899999999999999999999977632         


Q ss_pred             -------cCchhhhHHHHHHHHH
Q 008623          212 -------EGWGWGFGIPAVAMAI  227 (559)
Q Consensus       212 -------~g~~~~f~i~~~~~~i  227 (559)
                             ..|+++|++.+...++
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Confidence                   3588888855544333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.13  E-value=7.7e-10  Score=117.51  Aligned_cols=172  Identities=12%  Similarity=-0.127  Sum_probs=126.0

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .++......++.....+......|.|+.+++|.++.+.+.......++..++.++.|+++||+ |+|+.+..+.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            355555555555566666667788899889999999998888777788889999999999998 9999999988877777


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      ...........                  ..+.+.+.+..++.|+|.+...+..........| ++      |++..+.+
T Consensus       295 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~  349 (406)
T PRK15402        295 LLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVSAAM  349 (406)
T ss_pred             HHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHHHHH
Confidence            76665441101                  1234556677778888888776666554433333 44      89999999


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHH
Q 008623          191 YFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA  228 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~  228 (559)
                      ++...+|..+|+.+.+++.+..++.......++..++.
T Consensus       350 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        350 GMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            99999999999999999988877665444444333333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.13  E-value=7.8e-10  Score=119.55  Aligned_cols=185  Identities=18%  Similarity=0.153  Sum_probs=148.9

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchh--HHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRY--WTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~~  107 (559)
                      |.+...++..++.+-+...+......|..+++|++..+...+.....+.+.++..++|++.||+ |.|  ++++.+.++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence            5566677788888889999999999999999999999999999999999999999999999998 998  8888777665


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .+..+.-.+ ...+..              ..-.+.+.+++.-++.|+..|...+..-++.+|+.|+++      .+..+
T Consensus       360 ~~i~~~g~~-G~~~~~--------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efF  418 (477)
T PF11700_consen  360 IIIPLYGLF-GFWPSF--------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFF  418 (477)
T ss_pred             HHHHHHHHH-Hhhhcc--------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHH
Confidence            322222111 000110              011356667777889999999999999999999999987      79999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhcc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      |++.......+.+||++.|.+.+..| .|+.+....++.++++++++...
T Consensus       419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999998887 88888877777777777665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.11  E-value=1e-09  Score=118.75  Aligned_cols=177  Identities=16%  Similarity=-0.024  Sum_probs=123.5

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHH--------H
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTI--------A  101 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~--------~  101 (559)
                      +.+|...+..++....++.+..++|.|+++.+|++..+.++..+...++..++.+++|+++||+ ++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence            4578888889999999999999999999999999999999999999999999999999999997 654321        1


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhh
Q 008623          102 IFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK  181 (559)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  181 (559)
                      .+......+....... . .                  ..+.....+...+.+.+.++..+.......|..|+ .     
T Consensus       340 ~~~~~~~~~~~~~~~~-~-~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-----  393 (465)
T TIGR00894       340 NGIGGLGPGIFAYALP-Y-L------------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F-----  393 (465)
T ss_pred             HHHHHHHHHHHHHHHH-H-c------------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H-----
Confidence            1111111111111111 0 0                  01223333334444445554455555555666665 3     


Q ss_pred             ccccchhhhhHHHhHHHHHHhhhhhhhcccc---CchhhhHHHHHHHHHHHHHHHh
Q 008623          182 HKSSFFNWFYFSINIGALIASSVLVWIQDNE---GWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       182 ~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~---g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                       ++...++.+...++|+.++|.+.|++.+..   +|..+|.+.++..+++.+....
T Consensus       394 -~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 -LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence             899999999999999999999999887653   3888888887776666655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.09  E-value=8e-10  Score=117.90  Aligned_cols=164  Identities=9%  Similarity=0.004  Sum_probs=116.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhh-hcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHH-HHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKH-QLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWT-IAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-~~~~~~~~  107 (559)
                      +.+|......++....++++..++|.|+++ ..|++..+++.+.....++..++.+++|+++||+ +||+. +....++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            356777777888888899999999999976 3577888899999999999999999999999998 87764 33333333


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.++. ..   .                   .+......+..+.++|.....+.......|.+|+++      |++++
T Consensus       321 ~~~~~~~-~~---~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~  371 (412)
T TIGR02332       321 AAGWLLA-SA---T-------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAI  371 (412)
T ss_pred             HHHHHHH-Hh---c-------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHH
Confidence            3332211 11   0                   111111112222333333223334455567788776      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAV  223 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~  223 (559)
                      ++.+...++|++++|.+.|.+.+..| |++.|.+.++
T Consensus       372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            99999999999999999999999875 9998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.09  E-value=1e-09  Score=116.18  Aligned_cols=171  Identities=10%  Similarity=0.062  Sum_probs=125.7

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhc---CCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQL---DQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      .++..+...++....+.....+++.|+++.+   +.+....+.+.+...+...++.+..|++.||+ |||+.++++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3455555555555555555567888887765   45556678888888888899999999999998 9999999988877


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.......                       .+.+.+.+.+.+.|++..........+..+..|++.      +++..
T Consensus       295 ~l~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~  345 (396)
T TIGR00882       295 SVRIIGSSFA-----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY  345 (396)
T ss_pred             HHHHHHHHhc-----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence            7766655443                       345566677778887765544444455666666664      67766


Q ss_pred             hh-hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          188 NW-FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       188 ~~-~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      +. ++...++|+.++|.++|++.+..||+.+|.+.+++.++..+.
T Consensus       346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            66 678889999999999999999999999999887765554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.08  E-value=3.5e-09  Score=109.74  Aligned_cols=153  Identities=11%  Similarity=-0.014  Sum_probs=110.5

Q ss_pred             hhHhhHHHHHHHHH---HhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAY---YGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        33 ~~~~~~~~~~~~~~---~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |+.++...+.+.+.   +.-.....+|..+-+| +...+-|...+|.+.+....+.+-|+.||+ |-|.+..++..+..+
T Consensus        44 W~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~i  121 (480)
T KOG2563|consen   44 WVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGI  121 (480)
T ss_pred             hHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHH
Confidence            44444444443333   2222446677777778 777788899999999999999999999999 999999999999998


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhH--HHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSA--TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      |...=..+ +.|.+.                +.++  ....+..+.+.+.-.+...-+-..+-+|++++      |+.+.
T Consensus       122 Ga~Ir~is-s~p~v~----------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~  178 (480)
T KOG2563|consen  122 GAWIRLIS-SLPFVP----------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIAT  178 (480)
T ss_pred             HHHHhhhc-cCcccc----------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhh
Confidence            88776655 233221                2333  56677777777777776666677788999998      99998


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhcc
Q 008623          188 NWFYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~  210 (559)
                      .+-.++..+|..+|.++...+..
T Consensus       179 ~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  179 VLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             hHHHhcchHHHHHHhhccceecC
Confidence            88777777777777666555543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.08  E-value=3e-10  Score=121.62  Aligned_cols=162  Identities=17%  Similarity=0.090  Sum_probs=122.8

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++..++..++...+++....+.+.|.+..+| +..+.+.+.....+...++.++.|+++||+ |||+++..+.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            446666777777777777766666666665666 555677777788899999999999999998 999999999887777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhh-hccccchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK-KHKSSFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~  188 (559)
                      +.+...+..                      .+.+.+.+..++.+++.+...+...++++|..|.++..+. ++++..++
T Consensus       300 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  357 (437)
T TIGR00792       300 GYLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS  357 (437)
T ss_pred             HHHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence            766655430                      2344556666778888888888889999998875432111 23688889


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCch
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWG  215 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~  215 (559)
                      ++++...+|..+++.+.|++.+..||.
T Consensus       358 ~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       358 VRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999998777763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.07  E-value=1.9e-09  Score=113.61  Aligned_cols=171  Identities=10%  Similarity=0.035  Sum_probs=116.8

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      .|......++...+.+....+++.|+.+.+|+++.+.+.+.+...++..++.++.|++.||+ |+|+.+..+.++..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            45554545555555556667788898888999999999999999999999999999999998 99999988887777766


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccc-cccCCCCcchHhhhccccchhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSY-GADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      +......                      ++.+...+..++.+++.+...+..... ..+..+++.      ++.+  ..
T Consensus       280 ~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~  329 (382)
T PRK10091        280 LMLFFFG----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GG  329 (382)
T ss_pred             HHHHHHH----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HH
Confidence            5543321                      122333444445555544443433332 333333322      3333  34


Q ss_pred             hHHHhHHHHHHhhhhhhhccc-cCchhhhHHHHHHHHHHHHHHH
Q 008623          191 YFSINIGALIASSVLVWIQDN-EGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~-~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      +...++|..+||.++|++.+. .+|++.+.+.++..++.+..+.
T Consensus       330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            567789999999999999885 6799998888766555544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.06  E-value=2.7e-09  Score=113.88  Aligned_cols=148  Identities=14%  Similarity=0.038  Sum_probs=108.0

Q ss_pred             HHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCC
Q 008623           43 RLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSG  122 (559)
Q Consensus        43 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  122 (559)
                      ....+.+..++|.|+++ .|++..+.+.+.+...++..++.++.|++.||+ |||+.+..+.++..+..+.+...   +.
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~~  318 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---PQ  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---cc
Confidence            33444566788999875 699999999988999999999999999999998 99999988877665554443322   11


Q ss_pred             CCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHh
Q 008623          123 LKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS  202 (559)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp  202 (559)
                                        .....+....+..+++..+..+..+.++.|.+|++.      |++++++.+...++|+.++|
T Consensus       319 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp  374 (426)
T PRK12307        319 ------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNS  374 (426)
T ss_pred             ------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHH
Confidence                              112222222222223333344566778899999886      99999999999999999999


Q ss_pred             hhhhhhccccCchhhhH
Q 008623          203 SVLVWIQDNEGWGWGFG  219 (559)
Q Consensus       203 ~i~~~l~~~~g~~~~f~  219 (559)
                      .+.|++.+..|+....+
T Consensus       375 ~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        375 MAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHHHcccHHHHHH
Confidence            99999999888665433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.05  E-value=1.1e-09  Score=113.35  Aligned_cols=155  Identities=11%  Similarity=0.035  Sum_probs=127.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhh-hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMS-TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      |.++..+...++....+++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            345666666666666666666 7788888878999999999999999999999999999999998 99999888876666


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++........                      .+.+.+.+..++.|++.+...+...+++.|.+|+++      |++..+
T Consensus       289 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  340 (365)
T TIGR00900       289 LAILVVGLTP----------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFG  340 (365)
T ss_pred             HHHHHHHhhc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            6655554430                      125666777888999999988999999999999886      999999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccC
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEG  213 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g  213 (559)
                      +++...++|..++|.++|++.|..|
T Consensus       341 ~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       341 AQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999987654

>PRK10133 L-fucose transporter; Provisional

Probab=99.04  E-value=2.4e-09  Score=115.15  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=125.8

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHH-hhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYF-KHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      .++...+..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ |||+++..+.++.++
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~  337 (438)
T PRK10133        259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA  337 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            344555556666677777778889896 567899999999999999999999999999999998 999999888776655


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.....+.   +                    +. .......+.|++.+...|...+...+.+|++       .+.+.++
T Consensus       338 ~~~~~~~~---~--------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l  386 (438)
T PRK10133        338 LCLISAFA---G--------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF  386 (438)
T ss_pred             HHHHHHHc---C--------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhH
Confidence            54443332   1                    11 1244566789999999999999999998875       3555555


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~  230 (559)
                      ..+ ..+|+.++|.+.|.+.+..| -+..|.+..++.+..++
T Consensus       387 ~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        387 IVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            543 44688888889999999887 67888766655444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.04  E-value=1.7e-09  Score=114.94  Aligned_cols=176  Identities=11%  Similarity=0.081  Sum_probs=114.9

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHH-HHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWS-GTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      .++..+...++..........+.+.|+.+++|+++.+.+.+..... +...++.+++|++.||+ |||+.+..+.+..++
T Consensus       210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l  288 (402)
T PRK11902        210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAV  288 (402)
T ss_pred             CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            3444445445544443333344556777889999999999887654 46788899999999998 999988777766555


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHH----HHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVAL----YLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      ..+........+                   .+.+.+.+..    +..+++.+...+....++.+.+|.++      +  
T Consensus       289 ~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~--  341 (402)
T PRK11902        289 SNLGYWVLAVTP-------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y--  341 (402)
T ss_pred             HHHHHHHHHhcC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H--
Confidence            443332211101                   1233333333    34555566666777777777777553      3  


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                        ++++...++|..+++.++|++.|..||+..|.+.+++.+++++..+...
T Consensus       342 --~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        342 --ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence              4444455677776667899999999999999988877777666554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.04  E-value=3.9e-09  Score=112.99  Aligned_cols=186  Identities=12%  Similarity=0.039  Sum_probs=129.7

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      ..|.+.+..++...++.++..++|.|+++.+  +............+...+..|++|+++||+ |+||+++++.+...+.
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence            4688889889988888888889999998765  333333334455788899999999999999 9999999998876666


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcch----------H--
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADE----------A--  178 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~----------~--  178 (559)
                      .....+.  +|.               ....+.+.+.+..+.+.++.|.-+.+..-++.+.+|+++.          +  
T Consensus       330 ~~~~~l~--lp~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~  392 (462)
T PRK15034        330 SALLFLT--LPG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA  392 (462)
T ss_pred             HHHHHHH--hcc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHH
Confidence            5443332  122               1123455566655556677777777777788888874100          0  


Q ss_pred             ---hhhccccchhhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhcc
Q 008623          179 ---EKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       179 ---~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                         .+++.+...|+......+|+.+-|.+.|...+..| +...|+...+..++++++.|...
T Consensus       393 ~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        393 QREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence               01124567778888889999999988887776655 88888877777666666555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.04  E-value=3.1e-09  Score=112.32  Aligned_cols=175  Identities=15%  Similarity=0.006  Sum_probs=123.4

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHH-HHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSG-TCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      .++..+...++...+......+.+.|+++ .|+++.+.+.+...... ...++.+++|++.||+ |+|+.+..+.++..+
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            35555666667777777777888899975 79999999999888764 5566789999999998 999999887765533


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCC-cchHhhhccccchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDD-ADEAEKKHKSSFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~  188 (559)
                      ..+....... ..                ...+...++....+.+++.+...+...+...+..++ +.      +++.++
T Consensus       287 ~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~  343 (390)
T TIGR02718       287 LALLWFAQAA-FW----------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVT  343 (390)
T ss_pred             HHHHHHHHHH-cc----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHH
Confidence            3222211100 00                001222333334444555666666666776677665 44      899999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~  230 (559)
                      +.+...++|..++|.++|++.+..||+..|...+++.+++++
T Consensus       344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888877765555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.03  E-value=3.8e-09  Score=113.20  Aligned_cols=163  Identities=18%  Similarity=0.186  Sum_probs=134.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+..++...++...+........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |||+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            45667777888888888888888888888888877 5667777888999999999999999999 999999999999998


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc-cccchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH-KSSFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~  188 (559)
                      +.+...+...                     .+.+.+++..++.|++.+...+...++++|..+.++..+.++ .+..++
T Consensus       303 ~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  303 GFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            8888776610                     357788888899999999999999999999998765433222 366778


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCch
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWG  215 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~  215 (559)
                      .+.+...+|..+++.+.+.+.+..|+.
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            899999999999999998887666544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.02  E-value=2.5e-08  Score=106.96  Aligned_cols=353  Identities=15%  Similarity=0.100  Sum_probs=204.4

Q ss_pred             hhHHHHHhhhcCCChh-hhHHHHHHH----HHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 008623           51 TNLVRYFKHQLDQSSS-TASKNVLDW----SGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP  125 (559)
Q Consensus        51 ~~l~~yl~~~lg~s~~-~~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (559)
                      .....+.....+.+.. +.+......    .+...+..+.-|.++||+ |||..+.+..+...+..+...+.        
T Consensus        42 ~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~--------  112 (463)
T KOG2816|consen   42 TNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ--------  112 (463)
T ss_pred             hhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH--------
Confidence            4455555555544332 234444444    578888899999999999 99999999888777776666544        


Q ss_pred             CCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          126 VCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                                       .+++++.. -..-+.+.......++++|...+++      |...+++.+.....+..++|.++
T Consensus       113 -----------------~~~~~~~~-~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~  168 (463)
T KOG2816|consen  113 -----------------GYWFFLLL-GLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALG  168 (463)
T ss_pred             -----------------HHHHhhhc-ccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHH
Confidence                             13333311 1222334455677888999998886      99999999999999999999999


Q ss_pred             hhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCC-ChhHHHHHHHHHHHhhccccCCCccchhhhcccccccc
Q 008623          206 VWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGG-SPLTRICQVVAASIRKHKVELPADKSLLYETADAESNI  284 (559)
Q Consensus       206 ~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  284 (559)
                      +.+.+..|...+|.++++..++..+-.....++..+++.++ .+.++                                 
T Consensus       169 ~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~---------------------------------  215 (463)
T KOG2816|consen  169 GYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE---------------------------------  215 (463)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc---------------------------------
Confidence            99999999999999999888777776666555443332221 10000                                 


Q ss_pred             cCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhhhccccc
Q 008623          285 TGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSS-LFVLQGERM  363 (559)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  363 (559)
                           +..++..++.              ...+++...+  ....|+.+.++   ............-.. ..   ..++
T Consensus       216 -----~~~~~~~~~~--------------~~~~~~~~~~--~~~~r~~l~l~---l~~~~~~~~~~~~~~~~~---~~yl  268 (463)
T KOG2816|consen  216 -----LTPGSLDSSH--------------VADAFQSLTK--VGPDRLLLLLL---LVAFLSSLPEAGGASDVL---LLYL  268 (463)
T ss_pred             -----cCCCcccchh--------------hhhhhhhhcc--cCCCccchHHH---HHHHHHHHHHhcCceeEE---EEEE
Confidence                 0000000000              0000100000  11222222211   111111111111111 11   1122


Q ss_pred             cCCCCCcccee-CccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008623          364 DTHVGNSSFKI-PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRM  442 (559)
Q Consensus       364 ~~~~g~~~~~~-~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~  442 (559)
                      +..++   ++- .-+.+.........+.+    .+..|+..+...      ..+.+..|+..-.+...+.++.+      
T Consensus       269 ~~~f~---w~~~~~s~~~~~~~~~~~i~~----l~~~~~l~~~l~------~~~~i~lGl~~~~~~~~~~af~~------  329 (463)
T KOG2816|consen  269 KAKFG---WNKKEFSDLLSLVSILGIISQ----LLLLPLLSSILG------EKRLISLGLLSEFLQLLLFAFAT------  329 (463)
T ss_pred             eeecC---cCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh------hhhHhhHHHHHHHHHHHHHHHhc------
Confidence            33333   111 11112222222222222    122223333221      11366788888888888888754      


Q ss_pred             hhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          443 VREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                                    ..|.+. ...........+.|...+++..+++++.+|.+.++.....++.+.++|.+-+.+...+.
T Consensus       330 --------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  330 --------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL  394 (463)
T ss_pred             --------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence                          223323 23444455678899999999999999999999999999999999999999999877654


Q ss_pred             cCCCCCCCCCCCC
Q 008623          523 KNGNLGWIPDNLN  535 (559)
Q Consensus       523 ~~~~~~w~~~~~~  535 (559)
                           .|.|+...
T Consensus       395 -----~~~~~~~~  402 (463)
T KOG2816|consen  395 -----DDLPGFLF  402 (463)
T ss_pred             -----Hhcccccc
Confidence                 45565433

>TIGR00896 CynX cyanate transporter

Probab=99.01  E-value=3.1e-09  Score=110.62  Aligned_cols=156  Identities=14%  Similarity=0.048  Sum_probs=117.7

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccc-hhHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLG-RYWTIAIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-rr~~~~~~~~~~~  108 (559)
                      |.++......++....+++...++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ + ||+.+..+.++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~-~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV-KDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHH
Confidence            345656666666777788888999999975 799999999999999999999999999999998 6 5556667776666


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+.+.+.   +.                  ....   ....+.|++.+...|...+.+.+..++++     +++...+
T Consensus       275 ~~~~~~~~~---~~------------------~~~~---~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~  325 (355)
T TIGR00896       275 VGLCGLLFA---PM------------------HGLW---AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSA  325 (355)
T ss_pred             HHHHHHHHh---hh------------------hHHH---HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHH
Confidence            666655543   11                  1111   13457789998888887777766555433     3688888


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccC-chh
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEG-WGW  216 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g-~~~  216 (559)
                      +.+...++|..++|.+.|++.++.| |.+
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            8888889999999999999998776 543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.01  E-value=2.2e-09  Score=117.38  Aligned_cols=154  Identities=9%  Similarity=-0.029  Sum_probs=128.4

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+.......++....+++...++|.|+++.+|+++.+++.......+...++.++.|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4556666777777788888888999999999999999999999999999999999999999999 999999888887777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+.+....                    ...+.+...+..++.|+|.|...+.....+.+..|+++      ++.+.++
T Consensus       338 ~~~~l~~~~--------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~  391 (495)
T PRK14995        338 SFYGLAMTD--------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAI  391 (495)
T ss_pred             HHHHHHHhc--------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHH
Confidence            766554431                    01234445566788899999888888888888888886      8999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhcc
Q 008623          190 FYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~  210 (559)
                      ++...++|+.+|+.+.+.+.+
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.01  E-value=4.3e-11  Score=131.08  Aligned_cols=191  Identities=14%  Similarity=0.183  Sum_probs=3.0

Q ss_pred             HHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 008623           44 LAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL  123 (559)
Q Consensus        44 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (559)
                      ...+++......-+++.+++++++.|++.+.+.++..+..++..++++|. -|-|-+-.|.++++++.+++++-+++..-
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            66666666666678889999999999999999999999999999999986 66667777888888888887643221110


Q ss_pred             CC-------CCCCCCCCccc---------------c-----cCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcc
Q 008623          124 KP-------VCHGPRGEETC---------------Q-----VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDAD  176 (559)
Q Consensus       124 ~~-------~~~~~~~~~~~---------------~-----~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  176 (559)
                      .+       .+.....++.|               .     ........++++.++.|+|.....+...+|+=|..++++
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence            00       00000011112               0     111235678899999999999999999999999998886


Q ss_pred             hHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc---------------------ccC-chhhhHHHHHHHHHHHHHHHh
Q 008623          177 EAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD---------------------NEG-WGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       177 ~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~---------------------~~g-~~~~f~i~~~~~~i~~~~~~~  234 (559)
                            -+...|+.+.+..+|.++|.++++.+..                     +.| |...|.+.+++.++..+-++.
T Consensus       175 ------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  175 ------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  7888999999999999999988876532                     123 777788887766666665555


Q ss_pred             ccccccc
Q 008623          235 GTRLFRN  241 (559)
Q Consensus       235 ~~~~~~~  241 (559)
                      .+|+.+.
T Consensus       249 FPk~lp~  255 (539)
T PF03137_consen  249 FPKKLPG  255 (539)
T ss_dssp             -------
T ss_pred             CCccCCC
Confidence            5555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.00  E-value=2.3e-09  Score=116.26  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=128.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++..+...++....+++...++|.|+++.+|.++.+++.......++..++.++.|++.||+ |||+.+..+.++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4456667777778888888889999999999999999999999999999999999999999998 999999998887777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +...+.+.. .+                  +.+.+.+....++.|+|.+...+.......+..|+++      |+++.++
T Consensus       334 ~~~~~~~~~-~~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~  388 (485)
T TIGR00711       334 GFYWRAFTF-TP------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSL  388 (485)
T ss_pred             HHHHHhccC-CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHH
Confidence            776655220 01                  1234555666778899888877777777778888776      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccc
Q 008623          190 FYFSINIGALIASSVLVWIQDN  211 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~  211 (559)
                      ++...++|+.+|+.+.+.+.++
T Consensus       389 ~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       389 SNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.99  E-value=4.5e-09  Score=110.09  Aligned_cols=161  Identities=11%  Similarity=0.098  Sum_probs=116.2

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .++...+...+....++....+.|.|+++++|.++.+.+.+.....+...++.++.|++.||+ |||+.+..+.++..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            345555555566666777778889999989999999999999999999999999999999998 9999998887777776


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+.+......+                  ......+.+...+.|++.+...+.......|..|+ +      ++++.+++
T Consensus       286 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~  340 (385)
T TIGR00710       286 AVLLEITAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTASALF  340 (385)
T ss_pred             HHHHHHHHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHHHHH
Confidence            66555431100                  01233445556677888888888888888888774 3      78999988


Q ss_pred             hHHHhH-HHHHHhhhhhhhccccCchhhh
Q 008623          191 YFSINI-GALIASSVLVWIQDNEGWGWGF  218 (559)
Q Consensus       191 ~~~~~i-G~~igp~i~~~l~~~~g~~~~f  218 (559)
                      +..... |+..+| +.+.+.+..+|...+
T Consensus       341 ~~~~~~~g~i~~~-~~~~~~~~~~~~~~~  368 (385)
T TIGR00710       341 GTLRLVLGAIVGY-LVSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHH-HHHhccccChHHHHH
Confidence            777655 555555 455555544444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=98.99  E-value=1.7e-09  Score=113.44  Aligned_cols=147  Identities=14%  Similarity=0.048  Sum_probs=113.9

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      ..+.+....++....++....++| ++.+++|.+..+.+.+.....++..++.++.|+++||+ |||+.+....+...+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            344455556677777777788888 66678999999999999999999999999999999998 9985544433333222


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+.....                       .+.+...+..++.|++.+...+...+++.|.+|+++      |+++.++.
T Consensus       329 ~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  379 (398)
T TIGR00895       329 VLVGSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWA  379 (398)
T ss_pred             HHHHHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHH
Confidence            2222211                       234455666778888888888999999999999887      99999999


Q ss_pred             hHHHhHHHHHHhhhhhhh
Q 008623          191 YFSINIGALIASSVLVWI  208 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l  208 (559)
                      +....+|..+||.++|++
T Consensus       380 ~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       380 IGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhHHhc
Confidence            999999999999999876

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.97  E-value=3.1e-09  Score=116.17  Aligned_cols=172  Identities=12%  Similarity=0.081  Sum_probs=142.8

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      +...+...++.++....+...+|.+.++.+|.++...|++.+.+.++..++.++.+++.+|+ ++++.+..+.++.+++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence            34444445555555556667789999999999999999999999999999999999999998 99999888888888777


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +.+++.                       .+.+...+..++.|++.........+.+-+..|++.      |||.+++++
T Consensus       299 ~~lal~-----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~  349 (524)
T PF05977_consen  299 LLLALS-----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQ  349 (524)
T ss_pred             HHHhcc-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHH
Confidence            777665                       456677777888898888888888888889999887      999999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      +....+..+|.++.|.+.+..|-+.++.++++..+++.++..
T Consensus       350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888888776655555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10054 putative transporter; Provisional

Probab=98.96  E-value=5.1e-09  Score=111.07  Aligned_cols=173  Identities=13%  Similarity=-0.023  Sum_probs=127.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhh--hcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKH--QLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      |.++......++....+..+..+++.|+..  +.+.+....+.+.....+......++.|++.||+ ++|+.+..+.++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            345555566666666666565677777754  3455566677777777777777788899999998 9999998888777


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.....+..                      ++.+.+.+...+.++|.+...|...+++.+..|++.      |++++
T Consensus       285 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~  336 (395)
T PRK10054        285 VIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF  336 (395)
T ss_pred             HHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence            77766554330                      234455667778899988878888888999999876      88888


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      +..+ ...+|..+||.++|++.|+.|....|.+.+.+..++.+..
T Consensus       337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            8654 5668999999999999999998888876655444444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.96  E-value=2.7e-08  Score=107.83  Aligned_cols=163  Identities=13%  Similarity=0.078  Sum_probs=113.1

Q ss_pred             hhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 008623           48 GMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVC  127 (559)
Q Consensus        48 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (559)
                      .+..+.|.+. +++|++....++......+...++.+++|+++||+ |||+.++.+.++.+++.+.+..... +.     
T Consensus       289 ~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-~~-----  360 (479)
T PRK10077        289 VVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ-----  360 (479)
T ss_pred             HHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-cC-----
Confidence            3333445444 56888877777777778888899999999999998 9999999999888888777654411 00     


Q ss_pred             CCCCCCcccccCcchhHHHHHHHHHHHHhccC-CCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhh
Q 008623          128 HGPRGEETCQVTDAQSATFFVALYLIALGTGG-IKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV  206 (559)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~  206 (559)
                                   ...........+.+++.+. ..|...+++.|.+|+++      |++++++.+...++|..+++.+.+
T Consensus       361 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        361 -------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             -------------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhH
Confidence                         1111222233334443433 34677899999999887      999999999888888888755544


Q ss_pred             ------hhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          207 ------WIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       207 ------~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                            ++.+..+|+..|++.++..+++.+..+...+
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        422 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             HHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence                  4456778888888777665555555444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.95  E-value=7.5e-09  Score=113.35  Aligned_cols=168  Identities=15%  Similarity=0.090  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHH------------HHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHH
Q 008623           38 NECCERLAYYGMSTNLVRYFKHQLDQSSSTASK------------NVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        38 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  105 (559)
                      ..++..+.+|++..++|.+++ +.|++..+.+.            ......++..++.+++++++||+ |||++++.+.+
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            445566778888888888885 67876543221            12233445556778899999998 99999988887


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +..++.+.+..... +.                 ..+. .+....+...++..+..+....+.+|.+|.+.      |++
T Consensus       374 ~~~~~~~~l~~~~~-~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~  428 (502)
T TIGR00887       374 ILTVLFFVLGFAYN-HL-----------------STHG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RST  428 (502)
T ss_pred             HHHHHHHHHHHHHH-hc-----------------chhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHH
Confidence            76666655544310 00                 0111 11111112222233344566777899999997      999


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccc----------cCchhhhHHHHHHHHHHHHHH
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDN----------EGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~----------~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      +.++.+....+|++++|.+.+++.+.          .++...|++.+++.+++.+..
T Consensus       429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988773          334456666665555554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.92  E-value=1e-08  Score=110.35  Aligned_cols=178  Identities=15%  Similarity=0.009  Sum_probs=121.7

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccc-------hhHHHH-
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLG-------RYWTIA-  101 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-------rr~~~~-  101 (559)
                      +.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.|++.++..+.+.+..+++|.++||...       +||.+- 
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999999999999822       112221 


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhh
Q 008623          102 IFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK  181 (559)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  181 (559)
                      ++....++.++.+++.   +.                  .+.+..++...+.-...|...+....-..|..|+.      
T Consensus       338 i~~~~~ai~l~~l~~~---~~------------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~------  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFT---SD------------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH------  390 (466)
T ss_pred             HHHHHHHHHHHeeeec---CC------------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccchH------
Confidence            2222233333333322   11                  11211111111111112222222222223334433      


Q ss_pred             ccccchhhhhHHHhHHHHHHhhhhhhhccc---cCchhhhHHHHHHHHHHHHHHHhc
Q 008623          182 HKSSFFNWFYFSINIGALIASSVLVWIQDN---EGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       182 ~r~~~~~~~~~~~~iG~~igp~i~~~l~~~---~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                       -+..+++.+...++.++++|.+.+.+.+.   ..|++.|.+.+...+++.+.+.+.
T Consensus       391 -a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 -AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence             68899999999999999999999998842   269999999998888777665544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=1.3e-08  Score=108.05  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=109.5

Q ss_pred             hhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 008623           48 GMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVC  127 (559)
Q Consensus        48 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (559)
                      ....++|.|+++..+ ++.+.+.+.+...+.........+++.||.++.++.+..+.++..++.+++...          
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence            345678899877655 667888887777766655555556666554376777777777777776655544          


Q ss_pred             CCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhh
Q 008623          128 HGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVW  207 (559)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~  207 (559)
                                   ++.+.+.+...+.+++.+...|...+++.|..|+++      |++.+++++...++|..+||.++|+
T Consensus       295 -------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~  355 (400)
T PRK11646        295 -------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGW  355 (400)
T ss_pred             -------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHH
Confidence                         234445555667788888888888999999999887      9999999999999999999999999


Q ss_pred             hcccc---C-chhhhHHHHHHHHHHHHH
Q 008623          208 IQDNE---G-WGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       208 l~~~~---g-~~~~f~i~~~~~~i~~~~  231 (559)
                      +.+..   + ...++.+.+++.+++++.
T Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        356 LFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            98764   2 234455444444444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.91  E-value=1.9e-09  Score=111.09  Aligned_cols=145  Identities=21%  Similarity=0.230  Sum_probs=119.6

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCC-hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQS-SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      .+|.+....++....++....++|.|+.+++|.+ ..+.+.+.+...+...++.++.|++.||+ |+|+..........+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLIL  285 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            4454556666666777888899999999999999 78999999999999999999999999998 988888777776666


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.+.+.+...                    ..+....++..++.|++.+...+...+++.|.+|+++      |+++.++
T Consensus       286 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  339 (352)
T PF07690_consen  286 GALGLLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGL  339 (352)
T ss_dssp             HHHHHCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHH
T ss_pred             HHHHHHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence            6666554411                    1234556667778899999999999999999999887      9999999


Q ss_pred             hhHHHhHHHHHHh
Q 008623          190 FYFSINIGALIAS  202 (559)
Q Consensus       190 ~~~~~~iG~~igp  202 (559)
                      .+...++|+.+||
T Consensus       340 ~~~~~~~~~~igP  352 (352)
T PF07690_consen  340 FNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.90  E-value=3.2e-08  Score=104.90  Aligned_cols=165  Identities=7%  Similarity=-0.022  Sum_probs=118.6

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .++..+...++.....++...+++.++.+++|++..+.+.+.....++..++.++.|++.||. +|+..+....+...++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~  295 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence            355555555666666666667764444567899999999999999999999999999999996 6554444333323332


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      ..+....                       .+.+.+.+..++.|++.+...+...+++.+..|++       +++..++.
T Consensus       296 ~~l~~~~-----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  345 (394)
T PRK10213        296 LVLTLWG-----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQ  345 (394)
T ss_pred             HHHHHHh-----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHH
Confidence            2322222                       23555666778889999988888888888888744       45666677


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHH
Q 008623          191 YFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA  226 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~  226 (559)
                      ....++|..+||.++|++.+..|++..+...++..+
T Consensus       346 ~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        346 VAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            778889999999999999999998888877665443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.89  E-value=3.6e-08  Score=103.60  Aligned_cols=167  Identities=11%  Similarity=-0.053  Sum_probs=113.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchh---HHHHH-HHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRY---WTIAI-FSI  105 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~~~~-~~~  105 (559)
                      |.+|.+....++....+|++..|+|.|+++ .|++.. .+.......+...++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            557888899999999999999999999964 678764 555555555544444   57788886 543   33332 333


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      +.++........                       .+.....+...+.+++.....+...++.+|.+|++.      |++
T Consensus       266 ~~a~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt  316 (368)
T TIGR00903       266 LIAAFFLALAFE-----------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGK  316 (368)
T ss_pred             HHHHHHHHHHHc-----------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCc
Confidence            333322222222                       112223334445566666666777889999999987      999


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      +.++.+...++|+..+|.+.+.+..  |.+..|.+.++..+++.+..+
T Consensus       317 ~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       317 AAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887773  666677766666666555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.88  E-value=4.4e-08  Score=99.22  Aligned_cols=169  Identities=16%  Similarity=0.102  Sum_probs=137.9

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .-|.+....-..+..+|.++.|+|.++. +.|+|..++|+.++...+......+..-++++|...+|+..+.....+.++
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3578888888899999999999999986 689999999999999999999999999999998767888888888888888


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .+.+.+.   |.                  .+++   ...+++|+|.|+.+|....++.+..++.+     +.++..++.
T Consensus       288 ~~G~~~~---P~------------------~~~~---lw~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgma  338 (395)
T COG2807         288 LVGLLLA---PG------------------QLPI---LWALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMA  338 (395)
T ss_pred             HHHHHHh---hh------------------hHHH---HHHHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHh
Confidence            8888766   22                  1221   22478999999999999999999887765     357777788


Q ss_pred             hHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHH
Q 008623          191 YFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAV  229 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~  229 (559)
                      +-...+=+..||.+.|++.|..| |+.++...+...++..
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            88888888999999999999876 8877665554443333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.88  E-value=1.7e-08  Score=104.12  Aligned_cols=175  Identities=16%  Similarity=0.154  Sum_probs=142.9

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+...++..++.+=+.-++......|..+++|++..+...+....++.+.++++++|+|.||+ |.|++++.+.++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            3556666777777777778888899999999999999999999999999999999999999998 999999999988776


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ..+...+.                       .....+++.-.+.|+..|......=++.++..|+++      -++.+|+
T Consensus       331 ~~~~~~~~-----------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl  381 (438)
T COG2270         331 AALYLIFL-----------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL  381 (438)
T ss_pred             HHHHHHHc-----------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence            65555443                       123335555568899999999999999999999997      7999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHh
Q 008623          190 FYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      |+........+||.+.+.+.+..| -|..+....++.+++++.++.
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            999999999999999998887766 566665555555566555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=3.3e-08  Score=109.28  Aligned_cols=204  Identities=16%  Similarity=0.196  Sum_probs=147.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      +.+..++....+.+....++.....+-+++.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-.|.+++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            4445555555555555557777777788889999999999999999999999999999999997 777778888999999


Q ss_pred             HHHHHhhhhccCCCCC----C---CCCCC-----------CCcccc----------cCcc-hhHHHHHHHHHHHHhccCC
Q 008623          110 GMTFLTVTASVSGLKP----V---CHGPR-----------GEETCQ----------VTDA-QSATFFVALYLIALGTGGI  160 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~----~---~~~~~-----------~~~~~~----------~~~~-~~~~~~~~~~l~g~g~g~~  160 (559)
                      +.+++++-+.+..--+    .   +....           ....|.          ..+. ....++++.++.|+|...+
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            9888865322111000    0   00000           000000          1111 2336788999999999999


Q ss_pred             CcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc------------------ccC-chhhhHHH
Q 008623          161 KPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD------------------NEG-WGWGFGIP  221 (559)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~------------------~~g-~~~~f~i~  221 (559)
                      .+...+|+=|-..+++      -...+|+.+.+..+|.++|.++++.+..                  +.| |+..|++.
T Consensus       255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~  328 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC  328 (735)
T ss_pred             ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence            9999999988887775      7888999999999999999998887632                  123 77788888


Q ss_pred             HHHHHHHHHHHHhcccccc
Q 008623          222 AVAMAIAVVSFFSGTRLFR  240 (559)
Q Consensus       222 ~~~~~i~~~~~~~~~~~~~  240 (559)
                      +.+.++..+-+++..+.+.
T Consensus       329 g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  329 GALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHhCcccCc
Confidence            8888877777777666543

>PRK09848 glucuronide transporter; Provisional

Probab=98.87  E-value=8.4e-09  Score=111.18  Aligned_cols=163  Identities=14%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++...+..++...+++......+.|+++.+|.+....+.......+...++.++.++++||+ |+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4466666777777777777777788888888888766555555555667788899999999998 999999999988777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhh-ccccchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKK-HKSSFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~  188 (559)
                      +.+.+.+.   +.                  .+.+.+++..++.++|.+...+...++.+|..|.++..+.+ +++..++
T Consensus       307 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~  365 (448)
T PRK09848        307 GYLLFFWV---SV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS  365 (448)
T ss_pred             HHHHHHHc---Cc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence            77666543   11                  34555666777889999999999999999998865422211 2477888


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCc
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGW  214 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~  214 (559)
                      .+++...+|..+|+.+.+.+.+..||
T Consensus       366 ~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        366 LFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999887665555

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.86  E-value=2.2e-08  Score=120.48  Aligned_cols=164  Identities=11%  Similarity=0.029  Sum_probs=129.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChh-hhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSS-TASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      |.++..++..++.....+.+..++|.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3445555555555566666778899999999999998 999999999999999999999999998 99998888887777


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+++.+.                       .+.+.+++..++.|++.++..+...+++.+..|++.      |+++++
T Consensus       311 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~  361 (1146)
T PRK08633        311 LSLFLLPTA-----------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA  361 (1146)
T ss_pred             HHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence            776666544                       245566677788899999888888999999999887      999999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhcc-ccCchhhhHHHHH
Q 008623          189 WFYFSINIGALIASSVLVWIQD-NEGWGWGFGIPAV  223 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~-~~g~~~~f~i~~~  223 (559)
                      +.++..++|..+++.+++.+.. ..++...|.+.+.
T Consensus       362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999888877765543 2344445554443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.86  E-value=4.6e-08  Score=98.73  Aligned_cols=175  Identities=15%  Similarity=0.141  Sum_probs=118.7

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhc--C-----------------CChhhhHHHHHHHHHHHHHhhhHHHHHhH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQL--D-----------------QSSSTASKNVLDWSGTCYITPLIGAFLAD   91 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g-----------------~s~~~~~~~~~~~~~~~~~~~~~~G~laD   91 (559)
                      ..+++....|.+...||++.-......+...  |                 .+...--.-.....+.-+.+.++.|++.|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            4456777788899999988654433333211  1                 11112222234556778889999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccC
Q 008623           92 AYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQ  171 (559)
Q Consensus        92 r~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~  171 (559)
                      |+ |||+++....+++.+..+++..+                   +..+....+++.+|+++.    +.+.+++.|..|.
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~~c-------------------~~rn~~tvllf~arafis----g~fqvaYvYtPEV  462 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLTTC-------------------KTRNAYTVLLFTARAFIS----GAFQVAYVYTPEV  462 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHHHh-------------------cCcchhHHHHHHHHHHHh----chheEEEEecCcc
Confidence            97 99999999999888777766543                   122233456667777664    4556789999999


Q ss_pred             CCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          172 FDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       172 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      +|...      |+.+.|....+..||+++.|+++  +...-.-..+..+...+.+++.+...+.+-
T Consensus       463 yPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  463 YPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             cchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeee
Confidence            99998      99999999999999999999988  333233333444455555555555555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.86  E-value=5.3e-08  Score=103.24  Aligned_cols=160  Identities=9%  Similarity=-0.093  Sum_probs=118.0

Q ss_pred             HHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 008623           41 CERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASV  120 (559)
Q Consensus        41 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  120 (559)
                      +...........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||. ++++++..+.++ .+....+.+.   
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~---  290 (393)
T PRK11195        216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ---  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH---
Confidence            33444455556677888889999999999999999999999999999999998 999888777533 3333223222   


Q ss_pred             CCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHH
Q 008623          121 SGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALI  200 (559)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~i  200 (559)
                                          .+.+...+..++.|++.+...+...+.+.+..|++.     +++++.+..+...++|..+
T Consensus       291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~  345 (393)
T PRK11195        291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL  345 (393)
T ss_pred             --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence                                234555666778899888888888888877655432     2688999999999999999


Q ss_pred             HhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          201 ASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       201 gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      +..+.+.+ +..|-++.+.+.+...++....
T Consensus       346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            99888855 5678777766655544444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.84  E-value=1.5e-07  Score=100.98  Aligned_cols=161  Identities=15%  Similarity=0.119  Sum_probs=113.8

Q ss_pred             HHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc--cc--hhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 008623           53 LVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY--LG--RYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCH  128 (559)
Q Consensus        53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (559)
                      ...|+++++|+++++...+.+...+-- ...|+.|.++|-+  +|  ||+=++++.++..++.+.++..   |..     
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~~-----   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PAS-----   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---ccc-----
Confidence            445788999999999887666655444 4488999999986  34  4445555666555555544443   220     


Q ss_pred             CCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhh
Q 008623          129 GPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI  208 (559)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l  208 (559)
                                 ..+.....+..++..+|.+......-+++.|...++..    .|+...++.+....+|++++..+.|.+
T Consensus        83 -----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   83 -----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                       12333445556677888888888889999999866541    267788888889999999999999999


Q ss_pred             ccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          209 QDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       209 ~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      .+..+++..|.+.+++.++.++..++..+
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999999998887666655544444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.80  E-value=4e-08  Score=118.24  Aligned_cols=182  Identities=10%  Similarity=-0.034  Sum_probs=132.3

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++..++..++..+.++++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4577777777777788888889999999999999999999999999999999999999999987 776666655554444


Q ss_pred             HHHHHhhhhc--cCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          110 GMTFLTVTAS--VSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       110 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      +.+.+.+...  .+.....+..     -......+.+.+.+..+++|++.+...+...+++.+.+|++.      |++++
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~  372 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKSI-----LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVI  372 (1140)
T ss_pred             HHHHHHhcccccccccccccch-----hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeee
Confidence            4433332100  0000000000     000000234566777888899999999999999999999997      99999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhcc-ccCchhhhHHHHH
Q 008623          188 NWFYFSINIGALIASSVLVWIQD-NEGWGWGFGIPAV  223 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~-~~g~~~~f~i~~~  223 (559)
                      +..+...++|..+++++.+.+.+ ..++...+.+.++
T Consensus       373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999999988863 3456655554443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.78  E-value=1.1e-06  Score=89.77  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=105.6

Q ss_pred             hhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc
Q 008623           59 HQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQV  138 (559)
Q Consensus        59 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (559)
                      ++.|++..+.+.+.........+..++.|.++||+ |||+..+..+++..++.+..- .                     
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~---------------------  118 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S---------------------  118 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c---------------------
Confidence            67999999999999999999999999999999999 999999999988777654321 1                     


Q ss_pred             CcchhHHHHHHHHHHHHhccCCCcccccc-cccCCCCcchHhhhccccchhhhh-HHHhHHHHHHhhhhhhhccccCc--
Q 008623          139 TDAQSATFFVALYLIALGTGGIKPCVSSY-GADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNEGW--  214 (559)
Q Consensus       139 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~iG~~igp~i~~~l~~~~g~--  214 (559)
                        .+...++++|++.|++.....++..+. +.|+-..+.+.  +..+.-++... ....+-++.+.+++-++.+..+.  
T Consensus       119 --~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~  194 (354)
T PF05631_consen  119 --SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP  194 (354)
T ss_pred             --cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence              457889999999999999888877664 34443222210  01222222211 11223334444455556665554  


Q ss_pred             hhhhHHHHHHHHHHHHHHHhcccc
Q 008623          215 GWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       215 ~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                      ..+|..+..+.+++.+.+...+++
T Consensus       195 vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  195 VAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             cchHHHHHHHHHHHHHHHHhcccc
Confidence            678888887777777766655554

>PRK11043 putative transporter; Provisional

Probab=98.77  E-value=2.1e-07  Score=98.54  Aligned_cols=158  Identities=9%  Similarity=0.009  Sum_probs=110.9

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      .+...+...+....++.+..+.|.|++ +.|++..+.+.......++..++..+.+++.||+ |+|+......+...++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~  282 (401)
T PRK11043        205 YLGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSV  282 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            333333444444556666677888875 5799999999888888888889999999999998 99997766655544444


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +.+......+.                  .+.+...+...+.+++.+...|...+...|..|+ +      ++++.++++
T Consensus       283 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~  337 (401)
T PRK11043        283 IAIWLASLLSH------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQN  337 (401)
T ss_pred             HHHHHHHHhcc------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHH
Confidence            33322211011                  2234445556677888888888887777777765 3      899999999


Q ss_pred             HHHhHHHHHHhhhhhhhccccCchh
Q 008623          192 FSINIGALIASSVLVWIQDNEGWGW  216 (559)
Q Consensus       192 ~~~~iG~~igp~i~~~l~~~~g~~~  216 (559)
                      .....++.+++.+.+.+.+......
T Consensus       338 ~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        338 TLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHccCCChhHH
Confidence            8888888888888888877544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.74  E-value=1.8e-07  Score=98.86  Aligned_cols=145  Identities=10%  Similarity=0.034  Sum_probs=92.2

Q ss_pred             HHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 008623           44 LAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL  123 (559)
Q Consensus        44 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (559)
                      .....+..+.|.|+++++|+++.+.+.+.....+...++.++.|++.||+ |||+.++.+.++..++.+.+.+..     
T Consensus       217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-----  290 (392)
T PRK10473        217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP-----  290 (392)
T ss_pred             HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            33344455667788889999999999999999999999999999999998 999999999888777777666541     


Q ss_pred             CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhh
Q 008623          124 KPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASS  203 (559)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~  203 (559)
                                        +.........+.+.|.+...+.  ....+..|.++      |+   +..+....++..+++.
T Consensus       291 ------------------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~------~~---g~~~~~~~~~~~~g~~  341 (392)
T PRK10473        291 ------------------SHAVSLFGITLICAGFSVGFGV--AMSQALGPFSL------RA---GVASSTLGIAQVCGSS  341 (392)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc------cc---cHHHHHHHHHHHHHHH
Confidence                              1222222223333333322222  22233444433      33   2223344566666777


Q ss_pred             hhhhhccccCchhhhHHHHH
Q 008623          204 VLVWIQDNEGWGWGFGIPAV  223 (559)
Q Consensus       204 i~~~l~~~~g~~~~f~i~~~  223 (559)
                      +++++.+..|+.....+.+.
T Consensus       342 ~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        342 LWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHHHHhccchhHHHHHH
Confidence            77777777776654444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.74  E-value=1.4e-07  Score=98.87  Aligned_cols=148  Identities=11%  Similarity=-0.038  Sum_probs=99.3

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      .+..++..++...+.+.+..+.|.++.+++|+++.+.+.+.....+...++.++.|++.||+ |||+++..+..+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            45555555566666667777788888888999999999999999999999999999999998 99999988877644433


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      +.+..... .                  ..+.+...+...+.+.+.+...+.....+.|..|+ +      +++..+..+
T Consensus       275 ~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~  328 (377)
T PRK11102        275 IWLVVSAL-L------------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-M------AGTASSLAG  328 (377)
T ss_pred             HHHHHHHH-H------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-c------chHHHHHHH
Confidence            33322210 0                  01233333344444444445455555666777663 3      788888755


Q ss_pred             HH-HhHHHHHHhhhhh
Q 008623          192 FS-INIGALIASSVLV  206 (559)
Q Consensus       192 ~~-~~iG~~igp~i~~  206 (559)
                      .. ..+|+.+++++++
T Consensus       329 ~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        329 TLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            53 3567777776544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=4.8e-08  Score=106.39  Aligned_cols=176  Identities=17%  Similarity=0.140  Sum_probs=146.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccc--hhHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLG--RYWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~  107 (559)
                      +.++.+.+...+..++++....++|.|.. .+|++..+++.+++...+...++.++.|+++|+. .  ++.+..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            56777888888888999988899999987 8999999999999999999999999999999998 6  334444555555


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      .++.+.+++.                       .+.+.+...-.+.|++.|.+.......+.|..+.++      -..++
T Consensus       376 gl~~~~~p~~-----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~  426 (509)
T KOG2504|consen  376 GLARLFLPFA-----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAY  426 (509)
T ss_pred             HHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHH
Confidence            5555555544                       346677777788899999888877788899999886      89999


Q ss_pred             hhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhcc
Q 008623          188 NWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       188 ~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      |+......++..+||.++|++.|..| |...|+..++..+++....++..
T Consensus       427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999999999999888 99999999888877776554443

>TIGR00898 2A0119 cation transport protein

Probab=98.73  E-value=4e-08  Score=107.45  Aligned_cols=132  Identities=13%  Similarity=0.024  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHH
Q 008623           73 LDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYL  152 (559)
Q Consensus        73 ~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  152 (559)
                      ....+...++.++.+++.||+ |||+.+..+.++..++.+.+.+.   +.                  ...+...+..++
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~---~~------------------~~~~~~~~~~~~  419 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV---PV------------------DLYFLRTALAVL  419 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc---CC------------------CchHHHHHHHHH
Confidence            344566778888999999998 99999999988777776666544   11                  112333344445


Q ss_pred             HHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHH
Q 008623          153 IALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       153 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      .+++.+...+....+.+|.+|++.      |++++++.+....+|++++|.+.+ +. ..++..++.+.+...+++.+..
T Consensus       420 ~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~  491 (505)
T TIGR00898       420 GKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHH
Confidence            556666666778889999999987      999999999999999999999988 43 3556666666665555554444


Q ss_pred             Hh
Q 008623          233 FS  234 (559)
Q Consensus       233 ~~  234 (559)
                      ++
T Consensus       492 ~~  493 (505)
T TIGR00898       492 LF  493 (505)
T ss_pred             Hc
Confidence            33

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=6.4e-08  Score=105.21  Aligned_cols=165  Identities=15%  Similarity=0.067  Sum_probs=117.7

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++.++...++.....+......+.|++..++ +....+.+.+...+...++.++.++++||+ |||++++.+.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556666677777777777766666655554444 455666677777788889999999999998 999999988877666


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc-cccchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH-KSSFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~  188 (559)
                      +.+........+                  ..+.+.+++..++.+++.+...+...++++|..|.++-.+.+| .+..++
T Consensus       309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            655543321111                  1345556666677888899888889999999988653221111 244678


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCc
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGW  214 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~  214 (559)
                      ...+...+|..+++.+.|++.+..||
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888999999999999988776666

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.71  E-value=7.3e-08  Score=100.32  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=105.8

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .++.+.+..++.....+.+..+++.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+......+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            456666666666667778888999999999999999999999999999999999999999998 9998888777666665


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      ...+.+..  .                 ...+.+...+...+.+++.|...+...++.++..|+ +      +++..|+.
T Consensus       305 ~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~  358 (366)
T TIGR00886       305 AFLVVLGL--V-----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLV  358 (366)
T ss_pred             HHHHHhcC--C-----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHH
Confidence            55544331  0                 001344444555556666666667777888888874 3      89999998


Q ss_pred             hHHHhHHH
Q 008623          191 YFSINIGA  198 (559)
Q Consensus       191 ~~~~~iG~  198 (559)
                      +...++|+
T Consensus       359 ~~~~~~g~  366 (366)
T TIGR00886       359 GAIGNLGG  366 (366)
T ss_pred             HHhccCCC
Confidence            88877763

>PRK09669 putative symporter YagG; Provisional

Probab=98.69  E-value=4.9e-08  Score=105.17  Aligned_cols=162  Identities=14%  Similarity=0.103  Sum_probs=108.5

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .++.++...++...+........+.|.+..++. ....+.+.....+...++.+++++++||+ |||+.+..+.+..++.
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            345555555554444443334333344433433 33344455566677788889999999998 9999999887665544


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc-cccchhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH-KSSFFNW  189 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~  189 (559)
                      .....+.   +.                  ++.+.+++..++.|++.+...+...++++|..+.++..+.++ .+..++.
T Consensus       308 ~~~~~~~---~~------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~  366 (444)
T PRK09669        308 SALIFFI---PP------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFST  366 (444)
T ss_pred             HHHHHHh---Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHH
Confidence            3333222   11                  345666777788999999999999999999998554322222 2456678


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCch
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWG  215 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~  215 (559)
                      ++++..+|..+|+.++|++.+..||.
T Consensus       367 ~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        367 NLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88899999999999999988777763

>TIGR00901 2A0125 AmpG-related permease

Probab=98.69  E-value=9e-08  Score=99.62  Aligned_cols=144  Identities=10%  Similarity=0.018  Sum_probs=109.5

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHH-HHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWS-GTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      ++.+.+..++....++....++|.|+++ +|++..+.+.+.+... +...++.+++|++.||+ |||+.++.+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5666666777788888889999999987 9999999998887765 56788999999999998 9999998888877666


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      .....+..+...            ..+....+.+.+....++.+++.+...+...++..|.+|+++      |++.++++
T Consensus       289 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  350 (356)
T TIGR00901       289 NAGFVWLASNGH------------HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALL  350 (356)
T ss_pred             HHHHHHHHhcCc------------ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHH
Confidence            554443311000            000000234556667778899999999999999999999997      99999988


Q ss_pred             hHHHh
Q 008623          191 YFSIN  195 (559)
Q Consensus       191 ~~~~~  195 (559)
                      +...+
T Consensus       351 ~~~~~  355 (356)
T TIGR00901       351 SSLSA  355 (356)
T ss_pred             HHHHh
Confidence            77654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.68  E-value=1.6e-07  Score=100.21  Aligned_cols=163  Identities=12%  Similarity=0.027  Sum_probs=116.1

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhc-CCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQL-DQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      .++..++..++......+...+++.|.++.. +.+....+...+.+.....++.+++|++.||+ ++||++.+..++.++
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            3455566666666666677788999986532 55555556667777788899999999999998 999998888777666


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ..++..+.                       .+.. ......+.|++.+.++|...++..+..+++.       ..+.+.
T Consensus       312 ~~ll~~~~-----------------------~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~  360 (410)
T TIGR00885       312 LCLGSIFA-----------------------GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAG  360 (410)
T ss_pred             HHHHHHHc-----------------------CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHH
Confidence            65555543                       1112 2455667788888888999999999998763       233333


Q ss_pred             hhHHHhHHHHHHhhhhhhhcccc------CchhhhHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNE------GWGWGFGIPAVAMA  226 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~------g~~~~f~i~~~~~~  226 (559)
                      ..++ .+|+.+.|.+.|++.|..      +.+..|+++.++.+
T Consensus       361 l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       361 LVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            3333 399999999999999954      47788887665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.67  E-value=3.5e-07  Score=97.01  Aligned_cols=179  Identities=14%  Similarity=0.038  Sum_probs=129.9

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      +...++..++...+.-....+.+.|+++.-|.+....+.+.+...+.=.+.-.+.+++..|+ |.|++++++.+..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44555566666666666778889999765557777778777777777778888999999998 99999999998877776


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (559)
                      .+.+.... |.                 ........+...+.|+..+....+...++.+..|++.      |+++.++++
T Consensus       288 ~l~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~  343 (400)
T PF03825_consen  288 LLYAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYS  343 (400)
T ss_pred             HHHHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHH
Confidence            66655410 00                 0001122333457899999999999999999999997      999999977


Q ss_pred             HH-HhHHHHHHhhhhhhhccccCch------hhhHHHHHHHHHHHHHHHhc
Q 008623          192 FS-INIGALIASSVLVWIQDNEGWG------WGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       192 ~~-~~iG~~igp~i~~~l~~~~g~~------~~f~i~~~~~~i~~~~~~~~  235 (559)
                      .. ..+|..+|..++|++.|.+|-+      ..+.+.+.+.++..+.+++.
T Consensus       344 ~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  344 ALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            64 5799999999999999987744      33444544444444444443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=2.9e-07  Score=98.60  Aligned_cols=188  Identities=13%  Similarity=0.087  Sum_probs=124.3

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .+++.+...++.++...-........+-++-|++..++.++.........+..+++.++.||+ |||+.++.+..+..+.
T Consensus       270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence            345555666665555444444445555567899999999999999999999999999999998 9999999999887777


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchh-HHHHHHHHHHHHh-ccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQS-ATFFVALYLIALG-TGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      .+++.....+..               ...... +..+++.++..++ .-+..|..+-+.+|.+|++.      |..+++
T Consensus       349 ~~~~~~~~~l~~---------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s  407 (485)
T KOG0569|consen  349 LLLMSIALFLSN---------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQS  407 (485)
T ss_pred             HHHHHHHHHHHH---------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHH
Confidence            766655422111               000011 1122333332222 22345778888999999998      999988


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccc
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRN  241 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~  241 (559)
                      +......+...+-......+.+..|- ..|.+..+..++..+..++..|+.|.
T Consensus       408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            87666666666555555566666663 45665556555666666665665443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.62  E-value=1.4e-07  Score=99.19  Aligned_cols=176  Identities=14%  Similarity=0.072  Sum_probs=139.2

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcC---CChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLD---QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      |.+|.+.+........|+.+..-.+.|.+..++   .+....|.+.+...+.-.+...+..++.+|+ |.|+.++++..+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence            467877777777777777777778889876543   3345577788888888888899999999998 999999999988


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      +++=...++++                       ++++.+.+.+.+.++-.+....++.-|+++.+|++-      .++.
T Consensus       299 ~~iRi~~~~~~-----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~  349 (412)
T PF01306_consen  299 MAIRIIGSGFA-----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATL  349 (412)
T ss_dssp             HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHH
T ss_pred             HHHHHHHHhhh-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHH
Confidence            88887888776                       468889999999999999988999999999999886      6677


Q ss_pred             hhh-hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          187 FNW-FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       187 ~~~-~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      ..+ ++.+.++|..+.+.++|++.|..|++..|++.+.+.+...+...+.
T Consensus       350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence            777 5788899999999999999999999988877765554444433333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.56  E-value=5.4e-07  Score=95.72  Aligned_cols=164  Identities=18%  Similarity=0.189  Sum_probs=131.3

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+...+...++...++....+.+..|.+..+|.+................++.++..++.+|+ |||+++..+.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3455555667777777777777788888888888888888888888888888899999999998 999999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc-cchh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS-SFFN  188 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~  188 (559)
                      +...+.+..   .                  ++.+.+++..++.++|.+...+..+++++|..+-+|-.+.+||. ..++
T Consensus       315 ~~~~~~f~~---~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s  373 (467)
T COG2211         315 GYLLLYFTP---A------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS  373 (467)
T ss_pred             HHHHHHhhc---C------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence            999888762   1                  56778888889999999999999999999999876654444443 3456


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCch
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWG  215 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~  215 (559)
                      .+.+..-+|..++..+.|++....||.
T Consensus       374 ~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         374 GMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            677777888888888888876666543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.51  E-value=2.5e-06  Score=90.06  Aligned_cols=148  Identities=12%  Similarity=0.008  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhc
Q 008623           40 CCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTAS  119 (559)
Q Consensus        40 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  119 (559)
                      ++.......+....+.|+++.+|.+..+.+.......++..++.++.+++.||+ ||+....  .....++.+.......
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~  293 (394)
T PRK11652        217 IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQS--VICCLLAGLLMWIPGW  293 (394)
T ss_pred             HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHH
Confidence            333333444455667788888999999999988888888888889999999998 7433332  2222222222111100


Q ss_pred             cCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHH
Q 008623          120 VSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGAL  199 (559)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  199 (559)
                       .                 ...+.+.+.+..++.+++.+...|...++..|.+|++       ++...++.+...++|+.
T Consensus       294 -~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~  348 (394)
T PRK11652        294 -F-----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSG  348 (394)
T ss_pred             -h-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHH
Confidence             0                 0023455666778888999988899999888988753       78888999989999999


Q ss_pred             HHhhhhhhhccccCch
Q 008623          200 IASSVLVWIQDNEGWG  215 (559)
Q Consensus       200 igp~i~~~l~~~~g~~  215 (559)
                      +++.+++.+.+...+.
T Consensus       349 ~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        349 LAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHccCCchHH
Confidence            9999998876653333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=3.3e-05  Score=82.27  Aligned_cols=103  Identities=12%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHH
Q 008623           72 VLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALY  151 (559)
Q Consensus        72 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (559)
                      .++.+....+.+++++.+.|+. |.|+.+.++......-......                        .|.+.++..-+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~------------------------~N~y~~yfssa  110 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF------------------------PNSYYLYFSSA  110 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh------------------------cchHHHHHHHH
Confidence            6677788888999999999998 9999999998876665554433                        24666888899


Q ss_pred             HHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhh
Q 008623          152 LIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL  205 (559)
Q Consensus       152 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~  205 (559)
                      +.|+|.+..+.....+++|..+++.      +.+..++.....+.+.++|..+.
T Consensus       111 llG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            9999999999999999999998886      77777776666666666664433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=3.2e-07  Score=93.90  Aligned_cols=176  Identities=13%  Similarity=0.036  Sum_probs=130.5

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccc--hhHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLG--RYWTIAIFSIIYVI  109 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~~~  109 (559)
                      ++...+.-...+.+.-..-+.++.++.+++.-+..+.|....-..+.+.++.++.|.++||+ +  |-.....++++...
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~  350 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV  350 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence            45555555555666666778999999999986666999999999999999999999999999 9  53333334443333


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ......++                       .+...+++.+...+++.+..............+.+++.+.+-.+..+++
T Consensus       351 ~~~~iP~~-----------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaI  407 (464)
T KOG3764|consen  351 SSGPIPFA-----------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAI  407 (464)
T ss_pred             HhchhHhh-----------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHH
Confidence            33333333                       4466688888888888888888888888888877654333346788889


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      ...+..+|..+||.++|.+.+..|+.|.-.+.++..++-..+
T Consensus       408 ad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv  449 (464)
T KOG3764|consen  408 ADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV  449 (464)
T ss_pred             HHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776666554444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.34  E-value=6e-06  Score=85.10  Aligned_cols=157  Identities=17%  Similarity=0.106  Sum_probs=119.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++...+..|+.-..--.+..++++|+.+..|++..+++..++.+..+.+++..++-++-.|+ -..|.+.+..+...+
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~il  314 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAIL  314 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence            3456666777776666666778999999988999999999999999999999999999998898 888888777655444


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      -.+...++                       .+. .-+...++.|+..+..+|.+.+...+..|++.        +..+.
T Consensus       315 l~~~~~l~-----------------------~g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~  362 (422)
T COG0738         315 LLLAVALI-----------------------GGV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSG  362 (422)
T ss_pred             HHHHHHHh-----------------------cCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccce
Confidence            33344333                       122 23445678899999999999999999999443        22222


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFG  219 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~  219 (559)
                      .-.+.-+|+.+-|.+.|++.|..|-...+.
T Consensus       363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            334556899999999999999999877766

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.32  E-value=2e-05  Score=77.68  Aligned_cols=166  Identities=13%  Similarity=0.158  Sum_probs=114.3

Q ss_pred             HHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 008623           45 AYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLK  124 (559)
Q Consensus        45 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (559)
                      ..|.+ +.....+++.+|+|.+|...+-..-.++..+ .++.|.+.|++ |++.++.+|.+...+|+..++++..  .  
T Consensus        17 t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~--~--   89 (250)
T PF06813_consen   17 TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS--G--   89 (250)
T ss_pred             cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh--C--
Confidence            34444 3455677899999999999999999999887 58889999999 9999999999999999988887621  1  


Q ss_pred             CCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhh
Q 008623          125 PVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSV  204 (559)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i  204 (559)
                          .        ....+.|.+.+..++.+.+.+.+.........+.||++       ||++.++.-....+++.+=..+
T Consensus        90 ----~--------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i  150 (250)
T PF06813_consen   90 ----R--------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQI  150 (250)
T ss_pred             ----c--------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHH
Confidence                0        11234566666666777776666566556666899865       9999999887777777665555


Q ss_pred             hhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          205 LVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       205 ~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      ...+.+.-.-...+.++....+++++..++.+
T Consensus       151 ~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  151 YSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            44444432223333334444445554444443

>PRK11462 putative transporter; Provisional

Probab=98.29  E-value=6.5e-06  Score=89.21  Aligned_cols=160  Identities=13%  Similarity=0.099  Sum_probs=98.4

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGM  111 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  111 (559)
                      ++.++...++..+...........|.+..+|. ....+.+...+.+...++.+++++++||+ |||+++..+.++..+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            44444444555555444444444444444553 33445667778888889999999999998 99998776555443333


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcc-ccchhhh
Q 008623          112 TFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK-SSFFNWF  190 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~  190 (559)
                      +...+.   |.                  .+...+++..++.|++.+...+...++.+|..+.++-.+.+|| +..++..
T Consensus       308 ~~~~~~---~~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~  366 (460)
T PRK11462        308 LAMFFV---PM------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGT  366 (460)
T ss_pred             HHHHHh---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHH
Confidence            333222   11                  2233334445566777777777778888888775432222233 2335666


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCc
Q 008623          191 YFSINIGALIASSVLVWIQDNEGW  214 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~  214 (559)
                      .++..+|..+|+.++|++.+..||
T Consensus       367 ~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        367 LFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            778889999999888887665555

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.29  E-value=1.2e-05  Score=85.84  Aligned_cols=168  Identities=14%  Similarity=0.041  Sum_probs=109.1

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+|...+..++....++.+...+|.|+++.+|.++.+.++.......+..++..+.+.+.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4467666777777777787778889999999999999999988878888888888887766554 444444333333333


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +...+.......                  ..+.+..+++.++.++|.+...|...+..-  .+.+.     .++++.++
T Consensus       297 g~~l~~~~~~~~------------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~-----~~G~a~a~  351 (413)
T PRK15403        297 GLALLIVGNLLW------------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL-----PKGTVSAS  351 (413)
T ss_pred             HHHHHHHHHHHc------------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC-----CCcHHHHH
Confidence            333332221000                  012333456777788888888777775332  22222     16778888


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHH
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVA  224 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~  224 (559)
                      ++.....+...++...+++.+. +-.++|....++
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~  385 (413)
T PRK15403        352 LNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV  385 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence            8888888888888888888665 445566555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.26  E-value=5.6e-06  Score=90.11  Aligned_cols=184  Identities=9%  Similarity=-0.019  Sum_probs=125.2

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhh----hHHHHHHHHHHHHHhhhHHH----HHhHhccchhHHH--HH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSST----ASKNVLDWSGTCYITPLIGA----FLADAYLGRYWTI--AI  102 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~~--~~  102 (559)
                      ..++....+....+.-..+.++.|.+++.|.+...    .+++.+.-.+...+..|+..    ++.||..+.+...  .+
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~  354 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL  354 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            33344444455555555666888887765544222    56777777777777777655    4455421333333  67


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc
Q 008623          103 FSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (559)
                      |.++.++++..+.+......              .....+.+++.+..++.++|.....|...+++.+..|++.      
T Consensus       355 G~~l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------  414 (475)
T TIGR00924       355 GMLFCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence            77777777766654311000              0112468888899999999999999999999999999987      


Q ss_pred             cccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          183 KSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       183 r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      |++++++++....+|..+++.+.....+..+|...|...++..++..+++++..
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888776666777777666655554444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.26  E-value=8e-06  Score=84.76  Aligned_cols=170  Identities=18%  Similarity=0.194  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhh
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTV  116 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  116 (559)
                      ...+...+++++=-..+=+|--+.+|++..|...+...+..+..++....|++..|..+++++..+++...++++.+..+
T Consensus       215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~  294 (403)
T PF03209_consen  215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL  294 (403)
T ss_pred             HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555667788888999999999999999999999999999999886559999999999988888877766


Q ss_pred             hhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhH
Q 008623          117 TASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINI  196 (559)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  196 (559)
                      +..                    ..+.+.+....+++|++.|.+.....+...|..++++      .+..+|.+..+..+
T Consensus       295 a~~--------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~  348 (403)
T PF03209_consen  295 AGP--------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAI  348 (403)
T ss_pred             HHh--------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHH
Confidence            632                    1457889999999999999999999999999998876      78899998888888


Q ss_pred             HHHHHhhhhhhhccc----------cCchhhhHHHHHHHHHHHHHH
Q 008623          197 GALIASSVLVWIQDN----------EGWGWGFGIPAVAMAIAVVSF  232 (559)
Q Consensus       197 G~~igp~i~~~l~~~----------~g~~~~f~i~~~~~~i~~~~~  232 (559)
                      ...+|-.++|.+.|.          .+|..+|.+-++..+++++++
T Consensus       349 A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  349 ARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            888888777766442          246667777776666665544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.22  E-value=4.2e-06  Score=81.22  Aligned_cols=158  Identities=19%  Similarity=0.151  Sum_probs=96.6

Q ss_pred             HHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 008623           53 LVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRG  132 (559)
Q Consensus        53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (559)
                      ...|+.+++|+...+.+.+........++...+.|-++||- |||+.-+..++.    +++..++..             
T Consensus        59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycit----YiLsCiTKh-------------  120 (454)
T KOG4332|consen   59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCIT----YILSCITKH-------------  120 (454)
T ss_pred             eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHH----HHHHHHhhc-------------
Confidence            34677788999999999988888888888899999999998 999987666554    444444422             


Q ss_pred             CcccccCcchhHHHHHHHHHHHHhccCCCccccc-ccccCCCCcchHhhhccccchhh-hhHHHhHHHHHHhhhhhhhcc
Q 008623          133 EETCQVTDAQSATFFVALYLIALGTGGIKPCVSS-YGADQFDDADEAEKKHKSSFFNW-FYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~iG~~igp~i~~~l~~  210 (559)
                             .+++-.++++|.+.|+.....+++..+ +++|.-+++. .+.+-.+--++- ......+-++++.+.+-.+.+
T Consensus       121 -------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~-FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd  192 (454)
T KOG4332|consen  121 -------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG-FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD  192 (454)
T ss_pred             -------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC-ChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence                   234566889999999999888777655 4455543221 000000111110 011222333444444444555


Q ss_pred             ccC--chhhhHHHHHHHHHHHHHHHhcc
Q 008623          211 NEG--WGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       211 ~~g--~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      +++  --.+|-.++....++..+++..+
T Consensus       193 ~~slGPVAPFdAAacfLaigmAvil~~W  220 (454)
T KOG4332|consen  193 TFSLGPVAPFDAAACFLAIGMAVILSSW  220 (454)
T ss_pred             HhccCCCCchHHHHHHHHHHHHHHHhhh
Confidence            544  45667766666666655554443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.20  E-value=0.00024  Score=74.57  Aligned_cols=157  Identities=13%  Similarity=0.078  Sum_probs=115.8

Q ss_pred             hhhHHHHHhhh-cCCChhhhH-HHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 008623           50 STNLVRYFKHQ-LDQSSSTAS-KNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVC  127 (559)
Q Consensus        50 ~~~l~~yl~~~-lg~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (559)
                      .+++..|+.+. .|++..|.. -+.-...-......++...+.|.. |-|++++++.+...+...++.+.          
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------   91 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------   91 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence            57899999887 899998864 566666777777888889999998 99999999988877777776665          


Q ss_pred             CCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhh
Q 008623          128 HGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVW  207 (559)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~  207 (559)
                                   .+...+.+..+..|++.+. ..+..+++-...|+++      -.++.+....+.-+|-.++.+++-.
T Consensus        92 -------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQl  151 (412)
T PF01770_consen   92 -------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQL  151 (412)
T ss_pred             -------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         4566677778888887776 3556677767777664      6677777777777777777766655


Q ss_pred             hcc--ccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          208 IQD--NEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       208 l~~--~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      +..  ..++....+++.....+++++.++.++
T Consensus       152 lvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  152 LVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            543  334667777777767777766655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.19  E-value=2.8e-08  Score=106.89  Aligned_cols=186  Identities=17%  Similarity=0.057  Sum_probs=110.5

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIG  110 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  110 (559)
                      .+...+...++.+...+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||+.++.+.++.+++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444445444443444444445556666665  2222334455666777778999998 9999999998877776


Q ss_pred             HHHHh-hhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          111 MTFLT-VTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       111 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      .+.++ .....+..              +...+...+............+..+....+.+|.+|.+.      |+++.++
T Consensus       330 ~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~  389 (451)
T PF00083_consen  330 SLILGIIFFLGVSS--------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGL  389 (451)
T ss_pred             cccccccccccccc--------------ccccccccceeeeeccccccccccccccccccccccccc------ccccccc
Confidence            66664 11010110              000011121111111122222445677788999999998      9999999


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccc
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLF  239 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~  239 (559)
                      .+....+++.++|.+...+.+..+-...+.+.+.+.++..+..++..++.
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            99999999999998888887776633445555555555555445545543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.17  E-value=8.1e-05  Score=79.26  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             ccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccch
Q 008623          378 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS  457 (559)
Q Consensus       378 ~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (559)
                      ...+.+-.+-+++-++..+    +++|       .+..+.+..|+.+.++=++.+.+++                    +
T Consensus       410 v~~a~~~~gEI~~~ffs~k----lI~k-------iGHv~v~~lgLa~~~~Rf~~~S~L~--------------------n  458 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFK----LIEK-------IGHVNVMYLGLACNVGRFLYYSYLQ--------------------N  458 (618)
T ss_pred             ehhhhhccchHHHHHHHHH----HHHH-------hcccceeeehhhHHHHHHHHHHHhc--------------------C
Confidence            3445555555555555554    4455       4444577888888888888877765                    5


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhc
Q 008623          458 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       458 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      +|...+.-++.++..+.+....-+|+...+|+++|.++.|+.. ..-++|-.+|++++|.+....+
T Consensus       459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg  524 (618)
T KOG3762|consen  459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG  524 (618)
T ss_pred             chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence            5667777799999999999999999999999999999999998 8889999999999999876543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=4.7e-06  Score=90.27  Aligned_cols=164  Identities=16%  Similarity=0.116  Sum_probs=108.2

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc---cchhHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY---LGRYWTIAIFSIIY  107 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~~~~~~  107 (559)
                      .+|...+..+|.....|++..|+|.|+++..|++..+++.+...+.++..++.+++|+++||.   ..+|..+.....++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            479999999999999999999999999986789999999999999999999999999999993   16666666665543


Q ss_pred             H-HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          108 V-IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      . ++.+.+...                       ........+.+....+.....++...-..+....+.     +|-..
T Consensus       354 ~~~g~~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~  405 (495)
T KOG2533|consen  354 AIIGAISLLAA-----------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTT  405 (495)
T ss_pred             HHHHHHHHHhh-----------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHH
Confidence            3 333433322                       112222222223333333334455555556665543     35555


Q ss_pred             hhhhhHHHhHHHHHHh-hhhhhhccccCchhhhHHHH
Q 008623          187 FNWFYFSINIGALIAS-SVLVWIQDNEGWGWGFGIPA  222 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp-~i~~~l~~~~g~~~~f~i~~  222 (559)
                      .+.+..+.+.++.++| +..+.....++|...|....
T Consensus       406 ~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  406 VSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             HhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            5555555555555444 44445556678888884333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.07  E-value=4.3e-05  Score=75.42  Aligned_cols=147  Identities=20%  Similarity=0.283  Sum_probs=107.9

Q ss_pred             hhhhHHHHHhhhcCCCh--hhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 008623           49 MSTNLVRYFKHQLDQSS--STASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPV  126 (559)
Q Consensus        49 ~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (559)
                      .....+.+.. +.+.+.  ...++..+.+.+...++.++.|+++||+ |||+.+..+.....++.+...+..        
T Consensus        21 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--------   90 (338)
T COG0477          21 LSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAP--------   90 (338)
T ss_pred             HHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCc--------
Confidence            3344554444 444444  4788899999999999999999999999 999888888766455544444431        


Q ss_pred             CCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCC-cchHhhhccccchhhhhH-HHhHHHHHHhhh
Q 008623          127 CHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDD-ADEAEKKHKSSFFNWFYF-SINIGALIASSV  204 (559)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~iG~~igp~i  204 (559)
                                  . ...+.+.+.|.+.|++.+...+...+++.|..|+ ++      |+...+.... ...+|..++|.+
T Consensus        91 ------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  151 (338)
T COG0477          91 ------------N-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLL  151 (338)
T ss_pred             ------------c-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1 2467788888889999999999999999999997 33      7888888777 578888888877


Q ss_pred             hhhhccc--cCchhhhHHHHHH
Q 008623          205 LVWIQDN--EGWGWGFGIPAVA  224 (559)
Q Consensus       205 ~~~l~~~--~g~~~~f~i~~~~  224 (559)
                      ++.+...  .+|+..|.+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         152 AGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHhcchHHHHHHHHHH
Confidence            7766543  5688855555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.06  E-value=2.8e-05  Score=62.14  Aligned_cols=68  Identities=24%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           37 GNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      ...++...+...+.++++.|++ +.|++..+.|.+.++..+...+++|++|+++||+ ||++.++.....
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            3445555566667899999997 5999999999999999999999999999999999 988888776543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.01  E-value=2.5e-05  Score=84.38  Aligned_cols=206  Identities=12%  Similarity=-0.008  Sum_probs=139.8

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhh-hcCCChh------h----hHHHHHHHHHHHHHhhhHHHHHhHhcc
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKH-QLDQSSS------T----ASKNVLDWSGTCYITPLIGAFLADAYL   94 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~------~----~~~~~~~~~~~~~~~~~~~G~laDr~~   94 (559)
                      ++.+|.++.++.++++.-++++.+..+.+.|+.+ .+|-++.      +    ..+....+.+...+..++--++.+|+ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            4457889999999999999999999999999875 4443321      1    12334445555566677778889998 


Q ss_pred             ch-hHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCC
Q 008623           95 GR-YWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFD  173 (559)
Q Consensus        95 Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~  173 (559)
                      |+ |++...+.++.++++....+....++-...  +..++....+.....+..++...+.|+..+.....-.+++++..+
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY--YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence            95 677788888888887777655321110000  000000000001113556666778899999999999999999998


Q ss_pred             CcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccC--chhhhHHHHHHHHHHHHHHHhcccc
Q 008623          174 DADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG--WGWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       174 ~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g--~~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                      ++.    .+.|..+|++|.+..+..++..+..|.+.+..|  -.+++.++++..+++.+..++..++
T Consensus       411 ~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       411 NLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            543    135889999999999999999988887655444  5567888888888887776665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.01  E-value=9.1e-05  Score=64.83  Aligned_cols=86  Identities=23%  Similarity=0.317  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHH
Q 008623          414 QLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRS  493 (559)
Q Consensus       414 ~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg  493 (559)
                      +++.+..+..+..++.+.....                    .+.+...+..++.+++.+...+....++.|..|++.|+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   86 (141)
T TIGR00880        27 RKPVLLVGLFIFVLSTAMFALS--------------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG   86 (141)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence            3345666666666666555432                    24455666778899998899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          494 LCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       494 ~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      +.+++.++...+|..+++.+.+.+.+
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            99999999999999999999998764

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.00  E-value=4.3e-05  Score=83.47  Aligned_cols=146  Identities=10%  Similarity=-0.011  Sum_probs=101.7

Q ss_pred             HHHHHHhhhhhHHHHHhhhcCCChh----hhHHHHHHHHHHHHHhhhHHHHHhHhccchhHH-------HHHHHHHHHHH
Q 008623           42 ERLAYYGMSTNLVRYFKHQLDQSSS----TASKNVLDWSGTCYITPLIGAFLADAYLGRYWT-------IAIFSIIYVIG  110 (559)
Q Consensus        42 ~~~~~~~~~~~l~~yl~~~lg~s~~----~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-------~~~~~~~~~~~  110 (559)
                      ....+......++.|.++..+.+..    ...++.+...+...+..|+.|++.||+ |||+.       +.+|.++..++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence            3444444556778888754333211    234455555566778888899999998 98873       67777777766


Q ss_pred             HHHHhhhhc-cCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          111 MTFLTVTAS-VSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       111 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ++.+..... ...              .....+.+++....++.|+|.++..|...+++.+..|++.      ++.++++
T Consensus       360 ~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~  419 (489)
T PRK10207        360 FLTAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGM  419 (489)
T ss_pred             HHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHH
Confidence            654432100 000              0112346677788889999999999999999999999987      8999999


Q ss_pred             hhHHHhHHHHHHhhhhhhh
Q 008623          190 FYFSINIGALIASSVLVWI  208 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l  208 (559)
                      ++...++|+.+|..++...
T Consensus       420 ~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        420 WFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999988777544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.98  E-value=0.004  Score=65.45  Aligned_cols=62  Identities=19%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 008623          457 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT  518 (559)
Q Consensus       457 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~  518 (559)
                      +.|.+.+..+.-|+-.|...+..+..+.+..|++.|..++|+.....++|-.++++++-.+.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555566677888888888888889999999999999999999999999888887766654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.95  E-value=5.1e-05  Score=83.15  Aligned_cols=175  Identities=13%  Similarity=0.028  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHhh--hcCCCh------hhhHHHHHHHHHHHHHhhhHH----HHHhHhccchhHHHHHHHHH
Q 008623           39 ECCERLAYYGMSTNLVRYFKH--QLDQSS------STASKNVLDWSGTCYITPLIG----AFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        39 ~~~~~~~~~~~~~~l~~yl~~--~lg~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~~~~~~~~  106 (559)
                      .+.....+|.+..-++.++..  ..+.+.      ...+++.+.-.+...+..|+.    +++.||+ +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            445556666666666666542  111111      124566666666666776766    5555555 666788889999


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      .++++..+.......+              +....+.+++.+..++.++|.++..|...+++.+..|++.      |+++
T Consensus       360 ~~l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~  419 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFI  419 (500)
T ss_pred             HHHHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHH
Confidence            9999888776532111              0111345678888999999999999999999999999987      9999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhc----------cccCchhhhHHHHHHHHHHHHHHHh
Q 008623          187 FNWFYFSINIGALIASSVLVWIQ----------DNEGWGWGFGIPAVAMAIAVVSFFS  234 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~----------~~~g~~~~f~i~~~~~~i~~~~~~~  234 (559)
                      +|.+..+..+|..++..+.+...          ...++.+.|...++..++..++++.
T Consensus       420 ~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        420 MGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99888777777777665554221          1123566776666544433333333

>TIGR00788 fbt folate/biopterin transporter

Probab=97.92  E-value=2.2e-05  Score=85.34  Aligned_cols=136  Identities=9%  Similarity=-0.033  Sum_probs=105.6

Q ss_pred             hhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccc
Q 008623           58 KHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQ  137 (559)
Q Consensus        58 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (559)
                      ++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.....+.....+..             
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~-------------  345 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA-------------  345 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc-------------
Confidence            457899999999999999999999999999999998 999999999988887765543220000000             


Q ss_pred             cCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccC
Q 008623          138 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG  213 (559)
Q Consensus       138 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g  213 (559)
                      ..-.+.+.+....++.+++.+........++.+..|++.      +++.++++....++|..+++.+++.+.+..|
T Consensus       346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            000112234444567777777777888999999999987      8999999999999999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.84  E-value=2.6e-05  Score=82.88  Aligned_cols=172  Identities=10%  Similarity=-0.036  Sum_probs=130.8

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      .+.++..++...+.-.+..++--|++ +++..+.-.|.....-..+-.+.-++.+++-.|+ |+-+++..+++..++=++
T Consensus       374 llff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~  451 (618)
T KOG3762|consen  374 LLFFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFL  451 (618)
T ss_pred             EehhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHH
Confidence            34455555555665556666655664 5565555556444444556666778889999998 999999999988877777


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      .....                       +|+|+.+..-++.|+..+.++.++.+|+++..|++-      |.++-++...
T Consensus       452 ~~S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g  502 (618)
T KOG3762|consen  452 YYSYL-----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQG  502 (618)
T ss_pred             HHHHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHH
Confidence            76655                       678999999999999999999999999999999997      7888887554


Q ss_pred             -HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          193 -SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       193 -~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                       .-.+|-.+|.+++|.+.+.+|-+..|.+.++..++.++.....
T Consensus       503 ~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  503 IFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence             4478888999999999999998888887776666555554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.80  E-value=0.022  Score=60.92  Aligned_cols=189  Identities=9%  Similarity=-0.129  Sum_probs=106.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |..+.+...+++.+..-=+...-.+.|+.+.+.-+.--.+..-..-.+...++.+.-|.+.||. .|.+++....+..-+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            3456777888888888777777788888876654555556666666778888889999999998 999988776554222


Q ss_pred             ----HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHH-HhccCCCcccccccccCCCCcchHhhhccc
Q 008623          110 ----GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIA-LGTGGIKPCVSSYGADQFDDADEAEKKHKS  184 (559)
Q Consensus       110 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (559)
                          +...+......+.-.           . ........+++...+.+ +..=.....-.+.=-|+...=..+....+.
T Consensus        81 sv~~s~~~~~~l~~~~~~~-----------~-~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La  148 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSS-----------S-QSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA  148 (432)
T ss_pred             HHHHHHHHHHHHHhCCccc-----------c-ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence                222222111111100           0 00111222222222222 111111122223334444321000111245


Q ss_pred             cchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          185 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       185 ~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      +..+...-.-.+.-++||++.|.+....+......+.+...++.+..
T Consensus       149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            55555555556789999999999988888877666666555555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.74  E-value=1.2e-05  Score=84.04  Aligned_cols=111  Identities=15%  Similarity=0.217  Sum_probs=89.2

Q ss_pred             cccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchh
Q 008623          379 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI  458 (559)
Q Consensus       379 ~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (559)
                      ++..-.++.++..|+.+.    +.+|       ..+.+.+.+|..+..++.+..++..                    .+
T Consensus        73 l~~vf~v~~~i~sPl~gy----Ladr-------yNR~~v~~vG~~iW~~Av~~~~fs~--------------------~F  121 (493)
T KOG1330|consen   73 LQTVFIVVFMIASPLFGY----LADR-------YNRKRVIAVGIFIWTLAVFASGFSN--------------------HF  121 (493)
T ss_pred             hhHHHHHHHHHHHHHHHH----HHhh-------cCcceEEeeHHHHHHHHHHHHHHHH--------------------HH
Confidence            344444555666677666    3333       3444678889888888887777642                    67


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 008623          459 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI  520 (559)
Q Consensus       459 ~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~  520 (559)
                      |.+.+.-.+.|+||....|..+++++|.+|++.|++..++++++..+|+.+|-..+..+.+.
T Consensus       122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            88889999999999999999999999999999999999999999999999999888888764

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.67  E-value=8.8e-05  Score=77.67  Aligned_cols=180  Identities=16%  Similarity=0.077  Sum_probs=120.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHH--------HHHHHHHHHHH-hhhHHHHHhHhccchhHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASK--------NVLDWSGTCYI-TPLIGAFLADAYLGRYWTI  100 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~--------~~~~~~~~~~~-~~~~~G~laDr~~Grr~~~  100 (559)
                      +.+...+..-|....++|+...+...-++ ..|..+.....        .......+..+ +..++..+.|++ |||++-
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            44555566677788888887766555443 34444332222        22222223333 566778889998 999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhh
Q 008623          101 AIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEK  180 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  180 (559)
                      +.+.+++++..+.++..-.  .                .......+...-+.+-++.-+.......+-+|.||.+.    
T Consensus       382 ~~GF~~~~i~~~~~~~~y~--~----------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv----  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYN--Q----------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV----  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCcc--c----------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH----
Confidence            9999998887777764311  0                00111111122223334444544555566799999998    


Q ss_pred             hccccchhhhhHHHhHHHHHHhhhhhhhcc-----ccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          181 KHKSSFFNWFYFSINIGALIASSVLVWIQD-----NEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       181 ~~r~~~~~~~~~~~~iG~~igp~i~~~l~~-----~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                        |+...++.....-+|+++|.....++.+     ..|.+.+|++.+.+++++.+..++.
T Consensus       440 --R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  440 --RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             --hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence              9999999999999999999999999998     7789999999988888777655443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.61  E-value=0.0046  Score=66.73  Aligned_cols=163  Identities=8%  Similarity=-0.005  Sum_probs=97.3

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCC-----hhhhHHHHHHHHHHHHHh-hhHHHHHhHhccchhHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQS-----SSTASKNVLDWSGTCYIT-PLIGAFLADAYLGRYWTIAIF  103 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~~~~~  103 (559)
                      |.++.+.+..||....|+.+.+     +++.+..+     .....++.....+.+.+. .++-+++++|+ +|++.+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~   80 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTV   80 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHH
Confidence            4466666777777777665543     56776653     234566666554544444 78889999998 999988877


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccc----cCcc---------hhHHHHHHHHHHHHhccCCCc-ccccccc
Q 008623          104 SIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQ----VTDA---------QSATFFVALYLIALGTGGIKP-CVSSYGA  169 (559)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~~~  169 (559)
                      ...+..-..++++.. .|.    .+...-...+.    ....         +.|...+.-....+-.....+ ..+++..
T Consensus        81 ~~~F~~~f~lF~~vl-~p~----~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        81 ISPFLGFFALFAFVI-YPL----SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             HHHHHHHHHHHHHHH-hcc----hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766665555554441 121    00000000000    0000         011111111122222223333 5678899


Q ss_pred             cCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhc
Q 008623          170 DQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ  209 (559)
Q Consensus       170 ~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~  209 (559)
                      |.++.+|      ..|.++++..+.|+|..+++.+..++.
T Consensus       156 di~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       156 QITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887      789999999999999999998888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.61  E-value=0.00091  Score=73.57  Aligned_cols=148  Identities=14%  Similarity=-0.017  Sum_probs=87.8

Q ss_pred             CccchhhHhhHHHHHHHHHH-hhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYY-GMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      .+|.....+....+.+.+.+ .+..+.+..+ +..|.+... ........+...++..++.++.||+ |||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            44444445555555555444 3344455444 456665443 4555566677777788889999999 999999999999


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      +.++.+.++.........  .       . .........+....+.......+..|..+.+.+|.+|.+.      |+++
T Consensus       369 m~~~~~~~~~~~~~~~~~--~-------~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~  432 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYY--P-------N-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHHhccC--C-------C-cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhhh
Confidence            999988887653211100  0       0 0000111222222222333344455666778899999987      8888


Q ss_pred             hhhhhHHH
Q 008623          187 FNWFYFSI  194 (559)
Q Consensus       187 ~~~~~~~~  194 (559)
                      .++.....
T Consensus       433 ~s~~~~~n  440 (513)
T KOG0254|consen  433 ASLAVAVN  440 (513)
T ss_pred             HHHHHHHH
Confidence            87744433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.0003  Score=73.72  Aligned_cols=167  Identities=13%  Similarity=0.149  Sum_probs=117.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhc---cchhHHHHHH-HH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAY---LGRYWTIAIF-SI  105 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~~-~~  105 (559)
                      +.++....+.+...+++-.=..+++.|++ .+|.+.+..+.+.....+...+.+|+.|..+||.   +||||-++.. ..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            45566666677777777766788999986 7999999999999999999999999999999983   3888766654 44


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      ..+++.++...+..+-..  .+|.+|..    ........++++.-+.=++.-......-++++|...+++     ++.+
T Consensus       111 ~i~~~l~Lig~aaDig~~--lgd~~~~~----~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~  179 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLL--LGDNERKP----VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTR  179 (498)
T ss_pred             HHHHHHhhhhhHhhhhHH--hcCCcccc----cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhc
Confidence            566676666655322211  13332110    011224455566666667776777778899999998776     1233


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhh
Q 008623          186 FFNWFYFSINIGALIASSVLVWI  208 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l  208 (559)
                      +.+++.....+|+.+|...++++
T Consensus       180 Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  180 ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             cchhHHHHHHhcceeeeeccccc
Confidence            88999999999999998777643

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.16  Score=52.60  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          460 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       460 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      ..+..+.+.+...-.......++.++.+|+...|+.|.+.|+..++|+-.=..++..+.|..+
T Consensus       371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            344567888887777788889999999999999999999999999999887788888877543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.24  E-value=0.00051  Score=77.41  Aligned_cols=133  Identities=11%  Similarity=0.103  Sum_probs=92.3

Q ss_pred             ccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--HHHh----------hh
Q 008623          378 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIR--LRMV----------RE  445 (559)
Q Consensus       378 ~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~--~~~~----------~~  445 (559)
                      ++.+...++..+..++.+.    +.+|.       ++++.+++|.++++++.++.++.+-..  ++..          ..
T Consensus        72 ~i~s~~~i~~~~~~i~v~~----~~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~  140 (633)
T TIGR00805        72 LINGSYEIGNLLLIIFVSY----FGTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA  140 (633)
T ss_pred             eeeehhhHHHHHHHHHHHH----hhccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence            4444555566666666655    45553       334578889999999988887653211  0000          00


Q ss_pred             cCCCC-----------------CCCc--cchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHH
Q 008623          446 HNYYD-----------------LPEM--PMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG  506 (559)
Q Consensus       446 ~~~~~-----------------~~~~--~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  506 (559)
                      +...|                 .+..  ...+..+++.-++.|+|.+...+...+++.|.+|++.|+...|+++....+|
T Consensus       141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG  220 (633)
T TIGR00805       141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG  220 (633)
T ss_pred             ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence            00011                 0111  1134456678899999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHhhhhh
Q 008623          507 NYLSSLLVTIVTSIS  521 (559)
Q Consensus       507 ~~lg~~l~~~v~~~~  521 (559)
                      ..+|+++++.+.+..
T Consensus       221 ~~lG~llgg~l~~~~  235 (633)
T TIGR00805       221 PAFGYLLGSFCLQIY  235 (633)
T ss_pred             hHHHHHHHHHHHhcc
Confidence            999999999988654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.14  E-value=0.0023  Score=68.47  Aligned_cols=102  Identities=13%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             ceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHH
Q 008623          384 TLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVP  463 (559)
Q Consensus       384 ~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (559)
                      ..+..+...+.+.    +.+|++.|       +.+.++.+...+..++.++..                    +...+.+
T Consensus        72 ~ysYal~qIp~Gl----LaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa~--------------------Sl~~L~i  120 (511)
T TIGR00806        72 PYSHLAVLVPVFL----LTDYLRYK-------PVLVLQALSFVCVWLLLLLGT--------------------SVWHMQL  120 (511)
T ss_pred             HHHHHHHHHHHHH----HHHHhCch-------HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
Confidence            3444555555554    55664443       567777777777777766643                    6677888


Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008623          464 QYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV  517 (559)
Q Consensus       464 ~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v  517 (559)
                      .-+++|++|+... ....+++..+|+++|++++|+++....+|.++++.+++++
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999 9999999999999999999999999999999999999984

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.09  E-value=0.0078  Score=55.01  Aligned_cols=106  Identities=15%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHH
Q 008623           70 KNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVA  149 (559)
Q Consensus        70 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (559)
                      .-.++.+....+.+++...+.+++ |.|+.++++.+..++-......                        .+.+.++.+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~------------------------~~~~~l~~~   95 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY------------------------PNSYTLYPA   95 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh------------------------hhHHHHHHH
Confidence            344556666777778888888998 9999999999876654433321                        346778888


Q ss_pred             HHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhh
Q 008623          150 LYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV  206 (559)
Q Consensus       150 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~  206 (559)
                      -++.|++.+..+.+...++.+..++++      +++..+++....+.+..+|.++.-
T Consensus        96 s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   96 SALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999887765      788888877777777777765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.82  E-value=0.015  Score=61.21  Aligned_cols=157  Identities=13%  Similarity=0.030  Sum_probs=101.5

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccch-hHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGR-YWTIAIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~  108 (559)
                      +.+.+++++.......+|+....+-.-+ ..-|++...+|.+.....+.++++..+.|.++||. .+ |++++.......
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~  343 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFAL  343 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence            4566666666666666666554443222 34577778899999999999999999999999998 54 445555555444


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++...+...+.                   .....+.++..-.++|++..+..|.-.-+..|..-+..      -+.-.|
T Consensus       344 v~~~~l~~~t~-------------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsG  398 (480)
T KOG2563|consen  344 VGTLMLLTCTL-------------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSG  398 (480)
T ss_pred             HHHHHHHHhhc-------------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Ccccce
Confidence            44322222211                   11234556666677888888888888777777664433      255566


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccC
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEG  213 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g  213 (559)
                      ..+...++-+.+=..+.+...+..+
T Consensus       399 ll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  399 LLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             eEEeehhHHHHHHHHHHHHHhhccC
Confidence            6677777766666666676766655

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.72  E-value=0.018  Score=62.74  Aligned_cols=138  Identities=10%  Similarity=0.025  Sum_probs=93.1

Q ss_pred             hhhHHHHHhhhcCCC----hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchh-H------HHHHHHHHHHHHHHHHhhhh
Q 008623           50 STNLVRYFKHQLDQS----SSTASKNVLDWSGTCYITPLIGAFLADAYLGRY-W------TIAIFSIIYVIGMTFLTVTA  118 (559)
Q Consensus        50 ~~~l~~yl~~~lg~s----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-~------~~~~~~~~~~~~~~~~~~~~  118 (559)
                      .+.+..|.++.-+.+    .-..++..+.-.+...+..|+.+++=.|. +|| |      =+.+|+++..+++..+.+..
T Consensus       288 ~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~  366 (493)
T PRK15462        288 GSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSA  366 (493)
T ss_pred             hHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666665543221    12255666777777777788877776665 432 2      15677777888877776543


Q ss_pred             ccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHH-hHH
Q 008623          119 SVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI-NIG  197 (559)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~iG  197 (559)
                      ....              .....+.+++++..+++.+|.-+..|...+++++..|++.      |+..+|.+.... .+|
T Consensus       367 ~~~~--------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~l~~~~~~  426 (493)
T PRK15462        367 RWSA--------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYMLLSGAIA  426 (493)
T ss_pred             hhcC--------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHHHHHHHHH
Confidence            2111              0112456778888889999999999999999999999987      999999886643 577


Q ss_pred             HHHHhhhhhhh
Q 008623          198 ALIASSVLVWI  208 (559)
Q Consensus       198 ~~igp~i~~~l  208 (559)
                      ..++..+++..
T Consensus       427 ~~~~g~~~~~~  437 (493)
T PRK15462        427 NYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHh
Confidence            77666665544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.65  E-value=0.015  Score=64.52  Aligned_cols=154  Identities=11%  Similarity=0.040  Sum_probs=106.6

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChh---hhHHHHHHHHHHHHHhhhHHHHHhHhccchh-HHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSS---TASKNVLDWSGTCYITPLIGAFLADAYLGRY-WTIAI  102 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-~~~~~  102 (559)
                      +.+|.+...+++.++....+|.+..+.|......++-+..   +.++......++..++..+.|.+.-++ +|- +.+++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            4456777777888888888998888888888777766653   567777888888888899999999877 764 45556


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhc
Q 008623          103 FSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKH  182 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (559)
                      +.++++++.-+++..  -|                   ++....+...++.|+|.|...........-..|+++      
T Consensus       386 ~~~~~ta~~Gama~~--~~-------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------  438 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAV--RP-------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------  438 (599)
T ss_pred             HHHHHHHHHHHHHHc--cC-------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------
Confidence            665555443333322  11                   122223455667788888776666565555667665      


Q ss_pred             cccchhhhhHHHhHHHHHHhhhhhhh
Q 008623          183 KSSFFNWFYFSINIGALIASSVLVWI  208 (559)
Q Consensus       183 r~~~~~~~~~~~~iG~~igp~i~~~l  208 (559)
                      .+.+.++....-.+|+.+|..+...+
T Consensus       439 ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  439 IGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            88888888888888888887665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=96.55  E-value=0.0092  Score=66.25  Aligned_cols=174  Identities=10%  Similarity=0.060  Sum_probs=118.1

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhc-CCCh-hhhHH-HHHHHHHHHHHhhhHHHHHhHhccchhH--------H
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQL-DQSS-STASK-NVLDWSGTCYITPLIGAFLADAYLGRYW--------T   99 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~s~-~~~~~-~~~~~~~~~~~~~~~~G~laDr~~Grr~--------~   99 (559)
                      .+|++++..+|...+-..+..++- .+.+.+ |.+. .+... .++..++..+++.+.+|.+.... -||+        .
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt~  431 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPITI  431 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-HhhccccccchhH
Confidence            589999999988777776666664 444567 6633 32233 78999999999999999987322 3332        2


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHh
Q 008623          100 IAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAE  179 (559)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  179 (559)
                      .+....++.++.+++.+.  +|                     ...++++-++.|++.|..++.....++|+|. ++   
T Consensus       432 ~l~~~~~~~~~~lll~~~--~p---------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~---  484 (591)
T PTZ00207        432 ALFIPSVCIITMLTLFLT--LP---------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD---  484 (591)
T ss_pred             HHHHHHHHHHHHHHHHHH--CC---------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc---
Confidence            222222355555555554  22                     1358889999999999999999999999999 54   


Q ss_pred             hhccccchhhhhHHHhHHHHHH-hhhhhhhcccc----------C---chhhhHHHHHHHHHHHHHHHhcc
Q 008623          180 KKHKSSFFNWFYFSINIGALIA-SSVLVWIQDNE----------G---WGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       180 ~~~r~~~~~~~~~~~~iG~~ig-p~i~~~l~~~~----------g---~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                         -++-+++...+.-+|..+= -.+.|.+.|..          |   ++.+|.+.+.+.+++.+.....+
T Consensus       485 ---~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        485 ---PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             ---hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence               6777777777777776654 33445554321          2   77888888777777766654444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.53  E-value=0.013  Score=60.48  Aligned_cols=125  Identities=13%  Similarity=0.097  Sum_probs=97.6

Q ss_pred             hhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhH-HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccc
Q 008623           58 KHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYW-TIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETC  136 (559)
Q Consensus        58 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (559)
                      .+.+|+++.+.|.+.+...+.+.+.+..-+...||..|.-+ ....++....-..++...+                   
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------------------  349 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------------------  349 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------------------
Confidence            56789999999999988888888888888888888744433 3334444444444444333                   


Q ss_pred             ccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc
Q 008623          137 QVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN  211 (559)
Q Consensus       137 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~  211 (559)
                          .....+.++..+-.+..+...++...++....|+++      ||...|+......++-.+||++.|.+..+
T Consensus       350 ----~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  350 ----RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             ----ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence                234567788888888888889999999999999998      99999999999999999999999877654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.42  E-value=0.013  Score=63.33  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=115.0

Q ss_pred             CccchhhHhhHHHHHHHHHH-hhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHH-HHhHhccchhHHHHHHHH
Q 008623           28 TWKACPFILGNECCERLAYY-GMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGA-FLADAYLGRYWTIAIFSI  105 (559)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grr~~~~~~~~  105 (559)
                      +.|.++.+++..+.....-. +....++.|+...++++..+.+.+.+.......++..+.. .+.-.+ |-|+++.+|+.
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~  316 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLL  316 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHH
Confidence            34555555554444333332 2232557788899999999999999999999999999888 555554 99999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhcccc
Q 008623          106 IYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSS  185 (559)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (559)
                      ...+...+.++.                       .+.|+.+....+.+ ..+...|...+.++.+.++++      +++
T Consensus       317 ~~~~~~~~~af~-----------------------~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~  366 (463)
T KOG2816|consen  317 SEFLQLLLFAFA-----------------------TETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGK  366 (463)
T ss_pred             HHHHHHHHHHHh-----------------------ccchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccc
Confidence            999998888887                       34566665554443 455667888999999999987      999


Q ss_pred             chhhhhHHHhHHHHHHhhhhhhhc
Q 008623          186 FFNWFYFSINIGALIASSVLVWIQ  209 (559)
Q Consensus       186 ~~~~~~~~~~iG~~igp~i~~~l~  209 (559)
                      .+++....-.+.++++|.+-+.+.
T Consensus       367 v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  367 VFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             hhhHHHHHHHHhhhhhHHHHHHHH
Confidence            999999999999999998877663

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.34  E-value=0.035  Score=45.00  Aligned_cols=70  Identities=11%  Similarity=-0.005  Sum_probs=59.7

Q ss_pred             HHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhh
Q 008623           46 YYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVT  117 (559)
Q Consensus        46 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  117 (559)
                      -+.+.+.+| .++++.++|..+.+++.+..++++.++.+...++.++. .+++.+..+.+..++....+++.
T Consensus         8 RFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    8 RFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555 56789999999999999999999999999999999987 88899999998888888888766

Note that many members are hypothetical proteins.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.24  E-value=0.052  Score=59.67  Aligned_cols=106  Identities=11%  Similarity=0.117  Sum_probs=73.8

Q ss_pred             HHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhc
Q 008623           78 TCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGT  157 (559)
Q Consensus        78 ~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~  157 (559)
                      .-..+....+.+.|+. |||.....+.++..++.+..++..   .                 ..+.+...+...+..++.
T Consensus       362 ~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~  420 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLP---D-----------------DLGGWLHWILPLLGKFFI  420 (521)
T ss_pred             HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhh---c-----------------cchhHHHHHHHHHHHHHH
Confidence            4455555668999998 999999999999888888887662   1                 111111222222223333


Q ss_pred             cCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc
Q 008623          158 GGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~  210 (559)
                      +........+.+|++|+..      |..+.+.......+|++++|.+......
T Consensus       421 ~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  421 GSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333445788899999997      9999999999999999999987654443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.88  E-value=0.022  Score=64.34  Aligned_cols=64  Identities=41%  Similarity=0.675  Sum_probs=58.4

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 008623          452 PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT  515 (559)
Q Consensus       452 ~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  515 (559)
                      +.++++.+|+++++++.++||.+..+..+++.++++|++||..+.+++..+.++|+.+...+..
T Consensus       559 ~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~  622 (654)
T TIGR00926       559 SVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAE  622 (654)
T ss_pred             CCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999999999999999999999877665554

>PRK03612 spermidine synthase; Provisional

Probab=95.88  E-value=0.21  Score=54.92  Aligned_cols=170  Identities=12%  Similarity=0.007  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHH-HHHHHHH-HHHHH
Q 008623           36 LGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIA-IFSIIYV-IGMTF  113 (559)
Q Consensus        36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~-~~~~~  113 (559)
                      ....+....+..++.......+...+|-+..+.+.+++++.++..++..++|+++++. -|+...+ ++..+.. ++..+
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~l   98 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555566667777888999999999999999999999999887553 2322211 1111111 11111


Q ss_pred             HhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHH
Q 008623          114 LTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFS  193 (559)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  193 (559)
                      +.......                  .......+...++.++..|+..|....+..+...++       -++..|-.|..
T Consensus        99 l~~~~~~~------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-------~g~~~g~ly~~  153 (521)
T PRK03612         99 LYAAFAFQ------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQH-------LGHNVATVLAA  153 (521)
T ss_pred             HHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------hhhhhhhhHhH
Confidence            11110000                  011112233334556777776666655554432211       35566777888


Q ss_pred             HhHHHHHHhhhhhhhc-cccCchhh-hHHHHHHHHHHHHH
Q 008623          194 INIGALIASSVLVWIQ-DNEGWGWG-FGIPAVAMAIAVVS  231 (559)
Q Consensus       194 ~~iG~~igp~i~~~l~-~~~g~~~~-f~i~~~~~~i~~~~  231 (559)
                      ..+|+++|.++.+++. ...|-... +.++.+..+++++.
T Consensus       154 ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        154 DYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8899999988887654 46674434 43333333344333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.81  E-value=0.15  Score=57.40  Aligned_cols=176  Identities=16%  Similarity=0.135  Sum_probs=111.8

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHH-HHHHhhhHHHHHhHhc-cchhHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSG-TCYITPLIGAFLADAY-LGRYWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~  107 (559)
                      +.+...++...++...+-++.+++|-|+++++|.+++.+..+.+...+ +..++..++|++.-|+ +..|.+..+.++..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            456677788999999999999999999999999999999999976654 5667788999998886 23455555554444


Q ss_pred             HHHHHH---Hhhhh--cc------------C---------------------CCCCCCCCCCCC----------------
Q 008623          108 VIGMTF---LTVTA--SV------------S---------------------GLKPVCHGPRGE----------------  133 (559)
Q Consensus       108 ~~~~~~---~~~~~--~~------------~---------------------~~~~~~~~~~~~----------------  133 (559)
                      .+..++   ..+..  +.            |                     .+.|+|+.-..+                
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            433333   11110  00            0                     011123221000                


Q ss_pred             ------cccc--c----------------C-cchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          134 ------ETCQ--V----------------T-DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       134 ------~~~~--~----------------~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                            |-|.  .                + ......+++..++..+..+...+....++-+.+++++      |+-++|
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG  625 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG  625 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence                  0111  1                1 1223333333334444444444566677788888887      999999


Q ss_pred             hhhHHH-hHHHHHHhhhhhhhccc
Q 008623          189 WFYFSI-NIGALIASSVLVWIQDN  211 (559)
Q Consensus       189 ~~~~~~-~iG~~igp~i~~~l~~~  211 (559)
                      +..+.. -+|.+-+|++-|++.|.
T Consensus       626 ~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  626 FQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHHHhcCCchHhhhhhHhh
Confidence            977765 56888889999999864

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.59  E-value=0.0033  Score=69.41  Aligned_cols=172  Identities=15%  Similarity=0.152  Sum_probs=0.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHH-HHHHhhhHHHHHhHhc-cchhHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSG-TCYITPLIGAFLADAY-LGRYWTIAIFSIIY  107 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~  107 (559)
                      +.+....+...++....-++.+++|-|+++++++++++++.+.+...+ +..++.+++|++..|+ ++.|+++.+..+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            345666777888888888999999999999999999999999887665 7778899999999887 23455554444433


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCC-----------------------------------cccccC-cchhHHHHHHHH
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGE-----------------------------------ETCQVT-DAQSATFFVALY  151 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~-~~~~~~~~~~~~  151 (559)
                      .++.+.....     +.-.|+...-+                                   -.|... ......+++..+
T Consensus       385 ~v~~~~~~~~-----~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~  459 (539)
T PF03137_consen  385 IVSVILYSPL-----FFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLF  459 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHH-----HeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHH
Confidence            3333221100     00011111000                                   011111 122334444444


Q ss_pred             HHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHH-hHHHHHHhhhhhhhcccc
Q 008623          152 LIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI-NIGALIASSVLVWIQDNE  212 (559)
Q Consensus       152 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~iG~~igp~i~~~l~~~~  212 (559)
                      +..+..+..........-+..|+++      |+-+.|+..... -+|.+-||++.|++.|..
T Consensus       460 ~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  460 ILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             --------------------------------------------------------------
T ss_pred             HHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            4444444444444455668888887      999999976655 568888999999998863

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.40  E-value=2.8  Score=45.11  Aligned_cols=162  Identities=12%  Similarity=0.064  Sum_probs=96.1

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCC---hhhhHHHHHHHHH-HHHHhhhHHHHHhHhccchhHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQS---SSTASKNVLDWSG-TCYITPLIGAFLADAYLGRYWTIAIFS  104 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~  104 (559)
                      ++.+..+.+..+|..+.++.+.     -+++.+.++   +.....+-...-. ++.+..++-+++.+++ .|.+++....
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~   99 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIIL   99 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHH
Confidence            4456666666666655544332     345555443   4445555555555 6777788889999998 9999998888


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCCCCCc---ccc--c-------------CcchhHHHHHHHHHHHHhccCCCc-ccc
Q 008623          105 IIYVIGMTFLTVTASVSGLKPVCHGPRGEE---TCQ--V-------------TDAQSATFFVALYLIALGTGGIKP-CVS  165 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-------------~~~~~~~~~~~~~l~g~g~g~~~~-~~~  165 (559)
                      ..+...++++++.. .|.    ||.. |.+   ...  .             ..++...+++.   .-+-.....+ ..+
T Consensus       100 ~~F~~fF~LFa~Vi-~P~----~~~~-hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~---aELWgslV~S~lFw  170 (509)
T COG3202         100 GFFLGFFALFAFVI-YPY----KDIL-HPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIM---AELWGSLVLSLLFW  170 (509)
T ss_pred             HHHHHHHHHHHHHH-hcc----cccc-CCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHH---HHHHHHHHHHHHHH
Confidence            77777777777652 222    2211 100   000  0             00111111111   1111111111 335


Q ss_pred             cccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc
Q 008623          166 SYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN  211 (559)
Q Consensus       166 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~  211 (559)
                      ....|+++.+|      ..|.++.++...|++..++..+..++.++
T Consensus       171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            56678888776      78999999999999999999888888763

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.84  E-value=0.55  Score=50.26  Aligned_cols=137  Identities=9%  Similarity=0.005  Sum_probs=103.3

Q ss_pred             hhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 008623           49 MSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCH  128 (559)
Q Consensus        49 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (559)
                      +-..+..|+.++ |+++...|..=+...+....+..+..++.+|+ |..|+=+++.....+...+...+...|...    
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~----  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP----  350 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence            345678898876 99999999999999999999999999999998 999988888776655555544443333300    


Q ss_pred             CCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhh
Q 008623          129 GPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV  206 (559)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~  206 (559)
                               ....+...++.+..+-=+|.-++--+..-++-|..|+++      |+...+..+...++.-++...++-
T Consensus       351 ---------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  351 ---------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             ---------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence                     012344555555566567777778888888889999887      999999999988888887776544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.78  E-value=0.34  Score=44.24  Aligned_cols=63  Identities=8%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          457 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       457 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      ..+.+.+.-++.|++.+......-.++.+..+++.+++-.|++....+.+...|.++.-.+.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            446677888999999999999999999999999999999999999999999988887776654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.46  E-value=2.9  Score=42.33  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=31.5

Q ss_pred             HhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008623          475 TFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV  517 (559)
Q Consensus       475 ~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v  517 (559)
                      ..+..+--+.+..+++.|-.++|...+..++|-.+++++.-.+
T Consensus       359 sYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  359 SYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            3344444566778888899999999988888887777665444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.11  E-value=0.2  Score=52.59  Aligned_cols=93  Identities=12%  Similarity=0.036  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChh---hH
Q 008623          416 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA---MR  492 (559)
Q Consensus       416 ~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~---~r  492 (559)
                      +.+.+|.++..+|.+++.+....           +...+..+...+.++.++.++|.++.-|....+..||.+++   .|
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-----------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~   70 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-----------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR   70 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-----------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-----------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence            35678888888888886654321           00011234456778888999999999999999999999866   56


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          493 SLCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       493 g~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      ......++...++|+.++..+.+++-+
T Consensus        71 ~~~F~~fY~~in~G~~~~~~~~~~i~~   97 (372)
T PF00854_consen   71 DSFFNWFYWGINIGSLFSPTLVPYIQQ   97 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhhHHHHHHHHhhhhHhhcccchhhcc
Confidence            677888899999999999999998864

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=93.96  E-value=0.16  Score=54.84  Aligned_cols=198  Identities=11%  Similarity=0.037  Sum_probs=109.3

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHH-HHHHHHhhhH-HHHHhHhc--cchhHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDW-SGTCYITPLI-GAFLADAY--LGRYWTIAI  102 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~-~~~~~~~~~~-~G~laDr~--~Grr~~~~~  102 (559)
                      -.|+..+.+++..+..+..+..+....+......++++..++....+.. .+.+.+..++ .....-|.  ..+|+.+..
T Consensus       259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~  338 (488)
T KOG2325|consen  259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILL  338 (488)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeee
Confidence            3456667777777777777777666666666667777776665554433 2222222222 22222232  033555555


Q ss_pred             HHHHHHHHHHHHhhh-hccCCCCC-------CCCCCCCCcccc-cCcchhHHHHHHH-HHHHHhccCCCcccccccccCC
Q 008623          103 FSIIYVIGMTFLTVT-ASVSGLKP-------VCHGPRGEETCQ-VTDAQSATFFVAL-YLIALGTGGIKPCVSSYGADQF  172 (559)
Q Consensus       103 ~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~  172 (559)
                      ++++..........- ...+.-+.       .|+.. .-+-|+ .+..+.+.+++.. ++.|.+.-.+.....++.+|+.
T Consensus       339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~-~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiL  417 (488)
T KOG2325|consen  339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFE-EYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKIL  417 (488)
T ss_pred             hHHHHHHhhheeeeeccccccccccccccccCcCcc-cchhhccCcccChhhheeehhheeccccccccchHHHHHHHHh
Confidence            543333222221110 00010000       11110 001122 1222333333332 3355555555666778889999


Q ss_pred             CCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          173 DDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       173 ~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      .+.+      .+.+.+.+.....++..+||++...+....|.++...+.+...++....
T Consensus       418 gp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  418 GPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             CCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence            8887      7889999999999999999999998888889888777666555444433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.82  E-value=15  Score=39.97  Aligned_cols=62  Identities=18%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          461 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       461 ~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      +++.+++..+..-..+++..++-.+++++.+-|+.|-+.|+..++|+.--..++-++.|..+
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT  469 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT  469 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence            45677888888888889999999999999999999999999999999888877777777544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.73  E-value=0.78  Score=49.36  Aligned_cols=143  Identities=17%  Similarity=0.021  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhHhccchh---H----HHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCc
Q 008623           68 ASKNVLDWSGTCYITPLIGAFLADAYLGRY---W----TIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTD  140 (559)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (559)
                      .++..+.-.+...+..|+..++--+. +++   +    -+-++.++...+++.+........          .+   +..
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~----------~~---~~~  391 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG----------GP---SGL  391 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc----------CC---CCC
Confidence            45666666667777777777777664 443   1    233455555555555544311010          00   122


Q ss_pred             chhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhh------hccccCc
Q 008623          141 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVW------IQDNEGW  214 (559)
Q Consensus       141 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~------l~~~~g~  214 (559)
                      .+.++++...+++++|.=++.|...++++...|+.-      .+..++.+......|..++..+.+.      ..+....
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~  465 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE  465 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence            467888899999999999999999999999999986      7888888888888888777666652      1222234


Q ss_pred             hhhhHHHHHHHHHHHH
Q 008623          215 GWGFGIPAVAMAIAVV  230 (559)
Q Consensus       215 ~~~f~i~~~~~~i~~~  230 (559)
                      ...|...+...++..+
T Consensus       466 ~~~F~~~g~v~i~~~~  481 (498)
T COG3104         466 GRVFGTIGVVAIVIGI  481 (498)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            4456555544433333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.05  E-value=1.2  Score=44.05  Aligned_cols=173  Identities=11%  Similarity=0.035  Sum_probs=98.0

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchh--HHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRY--WTIAIFSIIYVIG  110 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~~~~~  110 (559)
                      ++..+-..++...|.-++.|.|..=.++-+   .--|.+.+.+.+...++.-+..++..|- ..|  ..+.+..+.....
T Consensus       252 LLG~iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~  327 (454)
T KOG4332|consen  252 LLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAA  327 (454)
T ss_pred             HHHHHHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHH
Confidence            333444455554444444444422111111   1246777777777777776666665553 222  2333333333333


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh
Q 008623          111 MTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF  190 (559)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (559)
                      ..+..++.+ .+               +..+++..-+++..++-.+.|.++|.++-+=.+..|+++      |++.++++
T Consensus       328 l~Lpilt~~-vs---------------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfF  385 (454)
T KOG4332|consen  328 LLLPILTSS-VS---------------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFF  385 (454)
T ss_pred             HHHHHHHhc-cC---------------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------Hhhhhhhe
Confidence            322222211 11               223455555777778888999999999999999999987      99999999


Q ss_pred             hHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHH
Q 008623          191 YFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVS  231 (559)
Q Consensus       191 ~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~  231 (559)
                      ..-.|+-..++-...--=....+-+..|.++.+.+.++.+.
T Consensus       386 RvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  386 RVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             echhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            99888876554322100011234556777777666655443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.76  E-value=3.1  Score=44.41  Aligned_cols=168  Identities=13%  Similarity=0.083  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCC
Q 008623          330 KAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHK  409 (559)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~  409 (559)
                      ++++....+.+.....|+...++.+.+..+ ....+.        -.+......++..++.+|+.+...++..-|++||+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk--------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR  102 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK--------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc--------cccccccccccccceeccccccccccccccccccc
Confidence            445555555666666777766665554432 111211        11234456788899999999997777666666541


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCCh
Q 008623          410 NGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD  489 (559)
Q Consensus       410 ~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~  489 (559)
                            .-+.++....++++.++++....... -.+|+..+  .-+......++++-+.-++.....-+.-++..+.+-+
T Consensus       103 ------PfI~~~s~~i~~~l~Lig~aaDig~~-lgd~~~~~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~  173 (498)
T KOG0637|consen  103 ------PFILAGSLLIAVSLFLIGYAADIGLL-LGDNERKP--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG  173 (498)
T ss_pred             ------chHHHhhHHHHHHHhhhhhHhhhhHH-hcCCcccc--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC
Confidence                  24556667777777766654322111 11111100  1124444556677777777767777778888888877


Q ss_pred             hhHHH-HHHHHHHHHHHHHHHhhHHHH
Q 008623          490 AMRSL-CSALSLTTVALGNYLSSLLVT  515 (559)
Q Consensus       490 ~~rg~-~~g~~~~~~~lg~~lg~~l~~  515 (559)
                      +.+-+ +.+.+...-++|+.+|=.+.+
T Consensus       174 d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  174 DAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhhhhccchhHHHHHHhcceeeeeccc
Confidence            77777 999999999999988877665

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.37  E-value=0.98  Score=47.76  Aligned_cols=61  Identities=15%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhh
Q 008623          142 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI  208 (559)
Q Consensus       142 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l  208 (559)
                      +.+.+++..+..|+..|....+....+.|..|+++      |...++...++-++|..++.+++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46777777778899999999999888998888776      89999998888899988888766544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=89.27  E-value=4.7  Score=41.25  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=48.2

Q ss_pred             HHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHh
Q 008623           77 GTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALG  156 (559)
Q Consensus        77 ~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  156 (559)
                      .......++.+.+..++ |-|+++.++...........    .-                    +.+..++.+-...|+|
T Consensus        69 ~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~Y~lyiA~N----l~--------------------pr~~tlVPa~~~~G~a  123 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFL-GTKWTMVLAVFPYALYIAAN----LE--------------------PRYETLVPAGLVLGMA  123 (390)
T ss_pred             HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHhh----cc--------------------hhHHhhccHHHhhccc
Confidence            33444455555777776 99999988765443322111    11                    2244566677788999


Q ss_pred             ccCCCcccccccccCCCCc
Q 008623          157 TGGIKPCVSSYGADQFDDA  175 (559)
Q Consensus       157 ~g~~~~~~~~~~~~~~~~~  175 (559)
                      .+.++.+-.+|+++.-...
T Consensus       124 a~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen  124 AGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             cccccccCcceecHHHHHH
Confidence            9999999999888876543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.13  E-value=6.1  Score=42.60  Aligned_cols=113  Identities=18%  Similarity=0.175  Sum_probs=70.1

Q ss_pred             HHHHHHHhhhHHHHHhH---hccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc--CcchhHHHHHH
Q 008623           75 WSGTCYITPLIGAFLAD---AYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQV--TDAQSATFFVA  149 (559)
Q Consensus        75 ~~~~~~~~~~~~G~laD---r~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  149 (559)
                      ...+..++..+.+.+.+   ++ ||++++..+.++..++.++.-+.  .|.-     -+-++|+...  ..++....++.
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p~d-----ap~~~t~~~~~~~~~~~~~~~ii  359 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FPND-----APLRPTDSPPLLFTPSYYLALII  359 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--cccc-----CCCCCCcccccccccchhHHHHH
Confidence            34444455555555654   45 89999999988777666665443  2320     0011222221  11234445555


Q ss_pred             HHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHh
Q 008623          150 LYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS  202 (559)
Q Consensus       150 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp  202 (559)
                      -++.|++.+......+.++++..|++       |..+++++-.-..++..++-
T Consensus       360 ~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  360 GFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh
Confidence            67899999999999999999999665       78888876666556555443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=86.48  E-value=25  Score=38.38  Aligned_cols=163  Identities=12%  Similarity=0.071  Sum_probs=86.9

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcC---CChhhhHHHHHHHHH-HHHHhhhHHHHHhHhccchhHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLD---QSSSTASKNVLDWSG-TCYITPLIGAFLADAYLGRYWTIAIFS  104 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~  104 (559)
                      ++.++.+.+..+|..+.+..+     .-+++.+=   .++.....+-....+ +..+...+-.+++|++ +|.+++....
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~   96 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII   96 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            345666666666665544322     23344332   233333333332222 3445566678999998 9999888776


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCCCCCcccc---c------------CcchhHHHHHHHHHHHHhccCCCc-cccccc
Q 008623          105 IIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQ---V------------TDAQSATFFVALYLIALGTGGIKP-CVSSYG  168 (559)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~l~g~g~g~~~~-~~~~~~  168 (559)
                      +.+...+.+.++.. .|.- +..|-  ++....   .            .++....+++.-   -+-.....+ ..+++.
T Consensus        97 ~~F~~fF~~f~~vl-yP~~-~~lhp--~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~a---ElwgsvvlSlLFW~fA  169 (491)
T PF03219_consen   97 IPFLGFFALFAFVL-YPNR-DILHP--DAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMA---ELWGSVVLSLLFWGFA  169 (491)
T ss_pred             HHHHHHHHHHHHHH-hhch-hhcCC--CHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            66555555555431 2320 00000  000000   0            000111111111   111111112 347788


Q ss_pred             ccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc
Q 008623          169 ADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       169 ~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~  210 (559)
                      .|.++.+|      ..|.++.+..+.|+|.+++..+..++.+
T Consensus       170 N~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  170 NEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998887      7889999999999999999888887766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=86.08  E-value=0.59  Score=50.25  Aligned_cols=159  Identities=11%  Similarity=-0.047  Sum_probs=84.3

Q ss_pred             hhcC---CChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcc
Q 008623           59 HQLD---QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEET  135 (559)
Q Consensus        59 ~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (559)
                      +.++   +++...+.+..+..++..++..+....--+. .-|+++....++.++..+.-.+.-  ......-|.      
T Consensus       245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~~~l~~~~lv--~~~n~~~Gi------  315 (433)
T PF03092_consen  245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVLASLFDLLLV--TRWNLDLGI------  315 (433)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcccEEEE--EEEeeeeCc------
Confidence            3455   7877777777666666666665554443333 556777666655554443322110  000000000      


Q ss_pred             cccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccccC--
Q 008623          136 CQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG--  213 (559)
Q Consensus       136 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g--  213 (559)
                         .+.  +..+..-++..+..+...-....+.+|+.|+..      -++.+++.....|+|..++..++..+.+..+  
T Consensus       316 ---~d~--~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt  384 (433)
T PF03092_consen  316 ---PDQ--WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFGVT  384 (433)
T ss_pred             ---CCe--EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence               001  111111122233333333344567889999987      5888999888889988888888877765443  


Q ss_pred             ------chhhhHHHHHHHHHHHHHHHhccc
Q 008623          214 ------WGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       214 ------~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                            -.+..++..+..++.+....+..+
T Consensus       385 ~~~f~~l~~lili~~~~~ll~l~ll~lLp~  414 (433)
T PF03092_consen  385 RDDFSNLWLLILICSVIQLLPLPLLFLLPP  414 (433)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence                  223344444444555554444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.64  E-value=56  Score=35.17  Aligned_cols=61  Identities=15%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 008623          457 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV  517 (559)
Q Consensus       457 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v  517 (559)
                      +.++..+..++.|+..|........+..+.++++.|..+-.+...+-.+|-.+|+.+.-.+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666679999999999988888899999999999999999999999988888775444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.30  E-value=1.8  Score=46.62  Aligned_cols=57  Identities=12%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhh
Q 008623          142 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSV  204 (559)
Q Consensus       142 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i  204 (559)
                      +.+..++..+++|+..|........+..+..++++      |..+..+...+..+|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666888999999988888888888887665      6667667777777777777654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=83.59  E-value=3  Score=41.27  Aligned_cols=93  Identities=11%  Similarity=0.024  Sum_probs=66.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhh
Q 008623          412 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM  491 (559)
Q Consensus       412 ~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~  491 (559)
                      .+++..+.+|.+...+|+.++...-.++             ....+.|.+.+...+.+.+....+........+.+|+ .
T Consensus        63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~~-------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~  128 (250)
T PF06813_consen   63 FGPWVVLLIGAVLGFVGYGLLWLAVSGR-------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S  128 (250)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCc-------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence            4566678899999999998877653221             1113455555555666667667766767777799986 6


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 008623          492 RSLCSALSLTTVALGNYLSSLLVTIVT  518 (559)
Q Consensus       492 rg~~~g~~~~~~~lg~~lg~~l~~~v~  518 (559)
                      ||++.|+.-...++++.+-+.+...+.
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            999999999999999877766665554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=80.54  E-value=13  Score=36.94  Aligned_cols=59  Identities=19%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             ccccchhhhhHHHhHHHHHHhhhhhhh---cc--ccCchhhhHHHHHHHHHHHHHHHhcccccc
Q 008623          182 HKSSFFNWFYFSINIGALIASSVLVWI---QD--NEGWGWGFGIPAVAMAIAVVSFFSGTRLFR  240 (559)
Q Consensus       182 ~r~~~~~~~~~~~~iG~~igp~i~~~l---~~--~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~  240 (559)
                      +|+....+..++.++|+.+.-+....-   .+  ...|++.+.+.+++.++.++++.+..++..
T Consensus         3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd   66 (267)
T PF07672_consen    3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFD   66 (267)
T ss_pred             ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            367777777788899988875432211   11  124999988888877777777766655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	559
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		6e-38
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		3e-10

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score =  155 bits (392), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 142/526 (26%), Positives = 241/526 (45%), Gaps = 82/526 (15%)
Query: 19  NPADKTKTGTW-KACPFILGNECCERLAYYGMSTNLVRYFKHQL-----DQSSSTASKNV 72
           +P D  K   W +  P+I+ +E CER ++YGM   L  +    L     ++     +K+V
Sbjct: 3   SPVDAPK---WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDV 59
Query: 73  L-DWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPR 131
              +    Y  PL+G ++AD + G+Y TI   S+IY +G  FL +               
Sbjct: 60  FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------------- 105
Query: 132 GEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY 191
            E + Q        F+  L+LIALG+GGIKP VSS+  DQFD ++++  +     F+ FY
Sbjct: 106 -EHSVQ-------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFY 154
Query: 192 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTR 251
           F+IN G+  AS  +  +  N G    FGIP V M +A V F+ G + + +  P       
Sbjct: 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG 214
Query: 252 ICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSF------------- 298
              V+ +++   KVE   +  L+         ++ +  L +                   
Sbjct: 215 FLPVIRSALLT-KVEGKGNIGLVLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMG 270
Query: 299 FDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVL 358
           F  A   +Q +  ++S +P        V+ +++++R+L ++A    F +++ Q +S ++L
Sbjct: 271 FVGAGASLQLERARKS-HP-----DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWIL 324
Query: 359 QGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM 418
           Q   M   V    F+  PA +   + L V+  +P  +  + P   +  G K  LT L++M
Sbjct: 325 QANDM---VKPQWFE--PAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVK--LTALRKM 376
Query: 419 GIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIG 478
           G G+ I+ LS I    ++L    M+   +        +SI WQ+  Y L+   EV     
Sbjct: 377 GAGIAITGLSWIVVGTIQL----MMDGGS-------ALSIFWQILPYALLTFGEVLVSAT 425
Query: 479 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKN 524
            LEF Y QAP AM+    +    +V +GN     L  ++ ++S K+
Sbjct: 426 GLEFAYSQAPKAMKGTIMSFWTLSVTVGN-----LWVLLANVSVKS 466

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 34/223 (15%)
Query: 22  DKTKT--GTWKACPFILGNECCERLAYYGMSTNLVRYF-----KHQLDQSSSTASKNVLD 74
           DK KT  G       +   E  ER +YYGM   L+ Y         L  + +TA+  +  
Sbjct: 3   DKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAI 62
Query: 75  WSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEE 134
           ++   Y++  IG F+AD  +G    +    ++ ++G   L +    S L           
Sbjct: 63  YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL----------- 111
Query: 135 TCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI 194
                       F ++ LI +GTG +KP VS+     +D+ D    + + + F+ F F I
Sbjct: 112 ------------FGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGI 155
Query: 195 NIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR 237
           N+GA IA  ++   Q+  G+   F + A+ M I ++ ++ G +
Sbjct: 156 NLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	559
2xut_A	524	Proton/peptide symporter family protein; transport	0.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  551 bits (1423), Expect = 0.0
 Identities = 131/557 (23%), Positives = 220/557 (39%), Gaps = 71/557 (12%)

Query: 21  ADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQS------SSTASKNVLD 74
           +        +  P+I+ +E CER ++YGM   L  +    L  S       + A      
Sbjct: 3   SPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHS 62

Query: 75  WSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEE 134
           +    Y  PL+G ++AD + G+Y TI   S+IY +G  FL +                  
Sbjct: 63  FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH--------------- 107

Query: 135 TCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSI 194
                      F+  L+LIALG+GGIKP VSS+  DQFD ++++        F+ FYF+I
Sbjct: 108 -------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTI 157

Query: 195 NIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQ 254
           N G+  AS  +  +  N G    FGIP V M +A V F+ G + + +  P          
Sbjct: 158 NFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLP 217

Query: 255 VVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAV----EIQSDN 310
           V+ +++   KVE   +  L+       S       +      +    A V     + +  
Sbjct: 218 VIRSALLT-KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276

Query: 311 IKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNS 370
             +     +      V+ +++++R+L ++A    F +++ Q +S ++LQ   M       
Sbjct: 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---- 332

Query: 371 SFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMI 430
                PA +   + L V+  +P  +  + P   +       LT L++MG G+ I+ LS I
Sbjct: 333 -QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWI 388

Query: 431 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA 490
               ++L+                 +SI WQ+  Y L+   EV      LEF Y QAP A
Sbjct: 389 VVGTIQLMM-----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437

Query: 491 MRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGWIPDNLNRGHLHYFFWLLT--- 547
           M+    +    +V +GN    L    V S          +   ++      FF+      
Sbjct: 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSP---TVTEQIVQTGMSVTAFQMFFFAGFAIL 494

Query: 548 ----------WYTYKRP 554
                      Y  +  
Sbjct: 495 AAIVFALYARSYQMQDH 511

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  144 bits (364), Expect = 2e-37
 Identities = 98/505 (19%), Positives = 181/505 (35%), Gaps = 81/505 (16%)

Query: 30  KACPFILGNECCERLAYYGMSTNLVRYF-----KHQLDQSSSTASKNVLDWSGTCYITPL 84
                +   E  ER +YYGM   L+ Y         L  + +TA+  +  ++   Y++  
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 85  IGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSA 144
           IG F+AD  +G    +    ++ ++G   L +    S                       
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASA---------------------- 110

Query: 145 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSV 204
             F ++ LI +GTG +KP VS+     +D+ D    + + + F+ F F IN+GA IA  +
Sbjct: 111 -LFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLI 165

Query: 205 LVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHK 264
           +   Q+  G+   F + A+ M I ++ ++ G +           L          +   +
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT---------LDPHYLRPTDPLAPEE 216

Query: 265 VELPADKSLLYETA----DAESNITGSRKLDHTKD-FSFFDKAAVEIQSDNIKESVNPWR 319
           V+    K  L            N+ G   L    +  +    A        +  SV    
Sbjct: 217 VKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK--- 273

Query: 320 LCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASL 379
              VT  E L+ +   +P++   ++F A+  Q S +                   P +  
Sbjct: 274 ---VTSTEHLRVVS-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDS-----SWFPVSWF 324

Query: 380 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILS---MIAAAVLE 436
              + L ++ + P    F    T      KN  +   +  +GL  + LS   M     L 
Sbjct: 325 QSLNPLFIMLYTPF---FAWLWTAWK---KNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378

Query: 437 LIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCS 496
                              +S +W V  + L+   E+      L    + AP A  S   
Sbjct: 379 --------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424

Query: 497 ALSLTTVALGNYLSSLLVTIVTSIS 521
           ++   + ++G+ L++ LVT+  + S
Sbjct: 425 SMWFLSSSVGSALNAQLVTLYNAKS 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 78/537 (14%), Positives = 154/537 (28%), Gaps = 147/537 (27%)

Query: 5   EDIYTKDGTLDYKGNPADKTKTGTWKACPFILGNECCERLAYYGMSTNLVRY-FKHQLDQ 63
           ED +  +   D K    D  K+        IL  E  + +     + +     F   L +
Sbjct: 26  EDAFVDN--FDCKDVQ-DMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 64  SSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGL 123
                 K V +     Y       FL           ++ + +Y+          + + +
Sbjct: 75  QEEMVQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQV 125

Query: 124 KPVCHGPRGEETCQVTDA----QSATFFVALYLIALGTGGI-KPCVSSYGADQFDDADEA 178
               +  R +   ++  A    + A   V +     G  G  K  V+        D   +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKN-VLID----GVLGSGKTWVAL-------DVCLS 173

Query: 179 EKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRL 238
            K      F  F+  +N+    +   ++ +                            ++
Sbjct: 174 YKVQCKMDFKIFW--LNLKNCNSPETVLEMLQK--------------------LL--YQI 209

Query: 239 FRNQKPGGSPLTRI---CQVVAASIRKHKVELPADKSLL-------YETADAESNITGSR 288
             N        + I      + A +R+     P +  LL        +  +A  N+   +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNL-SCK 267

Query: 289 KLDHTKDFSFFD----KAAVEIQSDNIKESVNPWRLCTVTQVEEL--KAI---VRLLPIW 339
            L  T+     D         I  D+   ++ P       +V+ L  K +    + LP  
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP------DEVKSLLLKYLDCRPQDLPRE 321

Query: 340 ATGI------IFSAVYSQMSSLF----VLQGERMDTHVGNS------------------- 370
                     I +       + +     +  +++ T + +S                   
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 371 --SFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFI-SIL 427
             S  IP   LS       + W  +    ++ V  K   HK  L + Q     + I SI 
Sbjct: 382 PPSAHIPTILLS-------LIWFDVIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSIY 432

Query: 428 SMIAAAVLELIRL-RMVREHNY-----YDLPEMPMSIMWQVPQYFLIGCAEVFTFIG 478
             +   +     L R + +H Y     +D  ++       + QYF       ++ IG
Sbjct: 433 LELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPP---YLDQYF-------YSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	559
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.89
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.43
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.33
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.19
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.02
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.88
2xut_A	524	Proton/peptide symporter family protein; transport	98.23

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=2.3e-28  Score=263.19  Aligned_cols=427  Identities=20%  Similarity=0.315  Sum_probs=279.5

Q ss_pred             CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhh-----cCCChhhhHHHHHHHHHHHHHhhhHHHHHhHh-ccchhHH
Q 008623           26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ-----LDQSSSTASKNVLDWSGTCYITPLIGAFLADA-YLGRYWT   99 (559)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~   99 (559)
                      ++++|.++.+++..++...++|++..+++.|++++     +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            45667788999999999999999999999999988     99999999999999999999999999999999 8 99999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHh
Q 008623          100 IAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAE  179 (559)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  179 (559)
                      ++.+.++.+++.+++.++                       .+.+.++++|++.|++.+...+...++++|++|+++   
T Consensus        88 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  141 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP-----------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD---  141 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC-----------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred             HHHHHHHHHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence            999999999988888765                       456778999999999999999999999999999875   


Q ss_pred             hhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccccccc---CCCCC-hhHHHHHH
Q 008623          180 KKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ---KPGGS-PLTRICQV  255 (559)
Q Consensus       180 ~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~  255 (559)
                       ++|+.++++++.+.++|..++|.+++++.+..||+++|++.++..+++++..++..++..++   +++++ +.++..+.
T Consensus       142 -~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (491)
T 4aps_A          142 -RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL  220 (491)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred             -ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence             13667888899999999999999999999989999999998877666665554443322211   11111 11111110


Q ss_pred             HHHHHhhccccCCCcc--chhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHH
Q 008623          256 VAASIRKHKVELPADK--SLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIV  333 (559)
Q Consensus       256 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  333 (559)
                      ...    .+...-...  ..+....+..         +.+.................   ....|+... ....+.++..
T Consensus       221 ~~~----~g~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~  283 (491)
T 4aps_A          221 LVK----VSLAVAGFIAIIVVMNLVGWN---------SLPAYINLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRVV  283 (491)
T ss_dssp             HHH----CCCCCHHHHHHHHHHHHHSSC---------CTTHHHHHHHHHHHHHHHHH---HHHHC-------------CT
T ss_pred             HHH----HHHHHHHHHHHHHHHHhccCc---------ccccchhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHHH
Confidence            000    000000000  0000000000         00000000000000000000   000000000 0112233333


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCC
Q 008623          334 RLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLT  413 (559)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~  413 (559)
                      ....+++....++..+.+....+..+..   +..+.  .....+.......+..++..++.++    +.+|+++|+  ..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~~r~--~~  352 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAA---ERVDS--SWFPVSWFQSLNPLFIMLYTPFFAW----LWTAWKKNQ--PS  352 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHH---HSCCC--SSSCSGGGTTHHHHHHHHHHHHHHH----HHHHTTTC-----
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHH---HHhcc--CccCHHHHhccchHHHHHHHHHHHH----HHHHHhccC--CC
Confidence            4455566666667776666665433221   11110  0033445666677777777777776    455555543  44


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHH
Q 008623          414 QLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRS  493 (559)
Q Consensus       414 ~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg  493 (559)
                      ....+.+|.++++++++++......    .+       .....+.+++++.+++.+++.+...|..++++.|..|++.||
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g  421 (491)
T 4aps_A          353 SPTKFAVGLMFAGLSFLLMAIPGAL----YG-------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS  421 (491)
T ss_dssp             CHHHHHHHHHHHHHHHTTTHHHHHH----CC-------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh----cC-------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence            5667778888888888777664321    00       011245667778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623          494 LCSALSLTTVALGNYLSSLLVTIVTS  519 (559)
Q Consensus       494 ~~~g~~~~~~~lg~~lg~~l~~~v~~  519 (559)
                      +++|+.++..++|+.+++.+.+.+.+
T Consensus       422 ~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          422 QMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999888754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=1e-28  Score=268.40  Aligned_cols=439  Identities=29%  Similarity=0.471  Sum_probs=274.4

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcC------CChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD------QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTI  100 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~  100 (559)
                      +++|.++.+.+..++...++|++.++++.|+++++|      .+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            345677888999999999999999999999999999      99999999999999999999999999999955999999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcc-hhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHh
Q 008623          101 AIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAE  179 (559)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  179 (559)
                      +.+.++..++.+++.++                       . +.+.+++.|++.|++.+...+...++++|++|+++   
T Consensus        89 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  142 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIF-----------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHT-----------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred             HHHHHHHHHHHHHHHHh-----------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence            99999988888887765                       3 57788899999999999999999999999999887   


Q ss_pred             hhccccc---hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHH
Q 008623          180 KKHKSSF---FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVV  256 (559)
Q Consensus       180 ~~~r~~~---~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (559)
                         |++.   +++++.+.++|..++|.+++++.+..||+++|++.++..+++++..++..++.+++++++++..+..+.+
T Consensus       143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (524)
T 2xut_A          143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI  219 (524)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence               6544   4558999999999999999999988999999998887766666555544433322222222211111111


Q ss_pred             HHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhh---hhhccccccccCCCcc-------ccchhhH
Q 008623          257 AASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA---VEIQSDNIKESVNPWR-------LCTVTQV  326 (559)
Q Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~v  326 (559)
                      ....+++....+ ......+..........   +........+....   .......   ...+|.       ..+..+.
T Consensus       220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  292 (524)
T 2xut_A          220 RSALLTKVEGKG-NIGLVLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMGFV---GAGASLQLERARKSHPDAAV  292 (524)
T ss_dssp             -------CTTHH-HHHHHHHHHHHHHHHHT---GGGTTTTCSSHHHHHHHHHHHHHH---HTGGGTHHHHSCCSCCSSSS
T ss_pred             HHHHhhhhcccC-ccchhhhhhhhhhhhhh---hcccchhhhhhhhhhhhhhhhccc---ccchhhHHhhhhccccHhHH
Confidence            111111110000 00000000000000000   00000000000000   0000000   001110       0001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhcc
Q 008623          327 EELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFT  406 (559)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~  406 (559)
                      ++.++......+++....++..+.+..+.+..+...++..    .+ .+.+.+...+.+..++..++.+++..|..+|.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (524)
T 2xut_A          293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG  367 (524)
T ss_dssp             TTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC----SS-SCHHHHHTTSGGGHHHHGGGTTTC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC----ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC
Confidence            2233444444455555556666666665554433222211    11 134455667777788888888887666666654


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 008623          407 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQ  486 (559)
Q Consensus       407 ~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~  486 (559)
                      ++   .+..+++.+|+++.+++++++...+..           .+.....+.+++++.+++.+++++...|..++++.|.
T Consensus       368 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  433 (524)
T 2xut_A          368 VK---LTALRKMGAGIAITGLSWIVVGTIQLM-----------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ  433 (524)
T ss_dssp             ------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             CC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44   455667778888888777766542210           0001123566777888999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 008623          487 APDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI  520 (559)
Q Consensus       487 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~  520 (559)
                      +|+++||+++|++++..++|+.+++.+.+.+.+.
T Consensus       434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999988753

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=5.5e-24  Score=225.03  Aligned_cols=359  Identities=10%  Similarity=0.035  Sum_probs=231.1

Q ss_pred             CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623           27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII  106 (559)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  106 (559)
                      +.++.+..+....++.........+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence            34445555556666666666666565655 6778999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      .+++.+++.....                    ..+.+.++++|++.|++.+...+...++++|++|+++      |+++
T Consensus       101 ~~~~~~~~~~~~~--------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~  154 (438)
T 3o7q_A          101 YALGAALFWPAAE--------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR  154 (438)
T ss_dssp             HHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHH
T ss_pred             HHHHHHHHHhccc--------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHH
Confidence            9999888833211                    1457889999999999999999999999999999987      9999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhc-cccC-------------------------chhhhHHHHHHHHHHHHHHHhcc-ccc
Q 008623          187 FNWFYFSINIGALIASSVLVWIQ-DNEG-------------------------WGWGFGIPAVAMAIAVVSFFSGT-RLF  239 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~~~-~~~  239 (559)
                      +++.+.+.++|..++|.+++++. +..+                         |++.|++.+...++..+..++.. ++.
T Consensus       155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~  234 (438)
T 3o7q_A          155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL  234 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999988 5554                         89999776655544444333321 111


Q ss_pred             cccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCcc
Q 008623          240 RNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWR  319 (559)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (559)
                      +++++++++..                                           +  .   ..              ++ 
T Consensus       235 ~~~~~~~~~~~-------------------------------------------~--~---~~--------------~~-  251 (438)
T 3o7q_A          235 QSDNHSDAKQG-------------------------------------------S--F---SA--------------SL-  251 (438)
T ss_dssp             TTTCCCCSSTT-------------------------------------------S--H---HH--------------HH-
T ss_pred             ccccccccccc-------------------------------------------c--h---hh--------------hH-
Confidence            10000000000                                           0  0   00              00 


Q ss_pred             ccchhhHHHHHHHHHHH-HHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhh
Q 008623          320 LCTVTQVEELKAIVRLL-PIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFI  398 (559)
Q Consensus       320 ~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~  398 (559)
                          +++.+.|.+.... ...+............+.++.      ++.+|.  -....+.......+..++..++..+  
T Consensus       252 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~--  317 (438)
T 3o7q_A          252 ----SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV------EEIPGM--TAGFAANYLTGTMVCFFIGRFTGTW--  317 (438)
T ss_dssp             ----HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ----HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hccCCc--chhHHHHHHHHHHHHHHHHHHHHHH--
Confidence                0000011111111 111111111112112222101      122220  0001112223333444444444444  


Q ss_pred             hhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhh
Q 008623          399 VPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIG  478 (559)
Q Consensus       399 ~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~  478 (559)
                        +.+|       .++++.+..+.++.++++++.....                    + .+.....++.+++.+...|.
T Consensus       318 --l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~g~~~~~~~~~  367 (438)
T 3o7q_A          318 --LISR-------FAPHKVLAAYALIAMALCLISAFAG--------------------G-HVGLIALTLCSAFMSIQYPT  367 (438)
T ss_dssp             --HHHH-------SCHHHHHHHHHHHHHHHHHHHHHCC--------------------H-HHHHHHHHHHHHHHTTHHHH
T ss_pred             --HHHH-------hcchHHHHHHHHHHHHHHHHHHHcC--------------------C-cHHHHHHHHHHHHHHHHHHH
Confidence              4455       3444566677777776666555421                    2 22344457778888888899


Q ss_pred             hHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623          479 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST  522 (559)
Q Consensus       479 ~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  522 (559)
                      .+++..+..|++ ++.+.++.. .+.+|+.++|.+.|.+.+..+
T Consensus       368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999977 999999887 677999999999999987654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=1.5e-24  Score=230.03  Aligned_cols=376  Identities=11%  Similarity=-0.003  Sum_probs=237.2

Q ss_pred             ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      ++.++.+.+..++.....+.+.+.+|.+. +++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            44556666667777777666667776555 566 9999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHhh----hhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc
Q 008623          109 IGMTFLTV----TASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS  184 (559)
Q Consensus       109 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (559)
                      ++.+++++    +                       .+.+.+++.|++.|++.+...+...++++|++|+++      |+
T Consensus       104 ~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~  154 (451)
T 1pw4_A          104 AVMLFMGFVPWAT-----------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RG  154 (451)
T ss_dssp             HHHHHHHHCHHHH-----------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HH
T ss_pred             HHHHHHHhhhhcc-----------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hh
Confidence            99988887    5                       356778899999999999999999999999999886      99


Q ss_pred             cchhhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhc
Q 008623          185 SFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKH  263 (559)
Q Consensus       185 ~~~~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (559)
                      +++++.+.+.++|..++|.+++++.+..| |+++|++.++..++..+..++..++........+. .             
T Consensus       155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------  220 (451)
T 1pw4_A          155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------  220 (451)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------
Confidence            99999999999999999999999888888 99999988876665554443333321111000000 0             


Q ss_pred             cccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008623          264 KVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGI  343 (559)
Q Consensus       264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  343 (559)
                           +.     +.++.++ .      ..         .     . .   +..+++........+.+.+....   +...
T Consensus       221 -----~~-----~~~~~~~-~------~~---------~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~  262 (451)
T 1pw4_A          221 -----EY-----KNDYPDD-Y------NE---------K-----A-E---QELTAKQIFMQYVLPNKLLWYIA---IANV  262 (451)
T ss_dssp             -----TT-----CCC--------------------------------------CCTHHHHHHTSSCHHHHHHH---HHHH
T ss_pred             -----hh-----ccccccc-c------hh---------h-----h-h---cccccccchHHHHHcCHHHHHHH---HHHH
Confidence                 00     0000000 0      00         0     0 0   00000000000001112222211   1111


Q ss_pred             HHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHH
Q 008623          344 IFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF  423 (559)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~  423 (559)
                      +.+..+.....+.+.   ++....|.  -....+.......+..+++.++..+    +.+|+.+     ++++.+.++.+
T Consensus       263 ~~~~~~~~~~~~~~~---~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~  328 (451)
T 1pw4_A          263 FVYLLRYGILDWSPT---YLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFM  328 (451)
T ss_dssp             HHHHHHHHHHHHHHH---HBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---HHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHH
Confidence            111111111222211   22222230  0011122333444445555555554    4455300     22234445544


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHH
Q 008623          424 ISI-LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT  502 (559)
Q Consensus       424 ~~~-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~  502 (559)
                      +.. ++++.+....                  ..+.+...+..++.+++.+...+..+.++.|..|++.||+++|+.++.
T Consensus       329 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (451)
T 1pw4_A          329 TLVTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  390 (451)
T ss_dssp             HHHHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence            444 4444433210                  124455566667788888888888899999999999999999999999


Q ss_pred             HHH-HHHHhhHHHHHhhhh
Q 008623          503 VAL-GNYLSSLLVTIVTSI  520 (559)
Q Consensus       503 ~~l-g~~lg~~l~~~v~~~  520 (559)
                      .++ |+.+++.+.|.+.+.
T Consensus       391 ~~~~g~~~~~~~~g~l~~~  409 (451)
T 1pw4_A          391 GYLGGSVAASAIVGYTVDF  409 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            999 999999999998764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.89  E-value=1.6e-23  Score=225.14  Aligned_cols=153  Identities=15%  Similarity=0.184  Sum_probs=115.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhH
Q 008623           65 SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSA  144 (559)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (559)
                      ..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........   .  ..+....-..+.+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~--~~~~~~~~a~~~~  127 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN---P--DNTVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---S--SSSCCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---c--hhHHHHHHhhhHH
Confidence            34567888999999999999999999999 9999999999999999988875411000000   0  0000001135688


Q ss_pred             HHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc--------cCchh
Q 008623          145 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------EGWGW  216 (559)
Q Consensus       145 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~--------~g~~~  216 (559)
                      .++++|++.|+|.|+..+..+.+++|..|++.      |++..++.+.+..+|..+++.++..+...        .+|++
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            89999999999999999999999999999997      99999999999999999998877655432        23666


Q ss_pred             hhHHHHHHHHHHH
Q 008623          217 GFGIPAVAMAIAV  229 (559)
Q Consensus       217 ~f~i~~~~~~i~~  229 (559)
                      .+.+..+..++.+
T Consensus       202 ~~~~~~~~~~~~~  214 (491)
T 4gc0_A          202 MFASECIPALLFL  214 (491)
T ss_dssp             HHHTTHHHHHHHH
T ss_pred             Hhhhhhhhhhhhh
Confidence            6555554444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.88  E-value=3.7e-23  Score=214.60  Aligned_cols=167  Identities=13%  Similarity=0.083  Sum_probs=146.5

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      +.++...++.......+.+.+|.+ .+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            445566677777777777777765 567999999999999999999999999999999999 999999999999999988


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      ...++                       ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+.
T Consensus        81 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  131 (375)
T 2gfp_A           81 VAVTT-----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM  131 (375)
T ss_dssp             HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred             HHHHh-----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence            88776                       467889999999999999999999999999999886      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623          193 SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~  230 (559)
                      ..++|..++|.+++++.+..||++.|.+.++..++..+
T Consensus       132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888999999877765554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.82  E-value=4.4e-21  Score=202.88  Aligned_cols=169  Identities=7%  Similarity=-0.120  Sum_probs=117.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++.+....++...++..+.+++|.|+++++|++..+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            3466677777777777778889999999999999999999999999999999999999999999 999999988876544


Q ss_pred             HHHHH---hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          110 GMTFL---TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       110 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      +....   .+...                      ....+...+.+.+++.+...+...+...+..++..    ++++..
T Consensus        86 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~  139 (417)
T 2cfq_A           86 MFAPFFIFIFGPL----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE  139 (417)
T ss_dssp             CHHHHHHHTHHHH----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCC
T ss_pred             HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccc
Confidence            32111   11100                      00012233444444444333333344444433211    135667


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHH
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA  226 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~  226 (559)
                      ++..+...++|..++|.+++++.+ .+|++.|++.++..+
T Consensus       140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~  178 (417)
T 2cfq_A          140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL  178 (417)
T ss_dssp             HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence            777777889999999999998876 589998887665433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.43  E-value=6.3e-13  Score=139.93  Aligned_cols=168  Identities=16%  Similarity=0.182  Sum_probs=136.6

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHH-HhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRY-FKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  108 (559)
                      |.++..++..++.....+++..++|.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            456777778888888888899999999 8888899999999999999999999999999999998 99999999988877


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      ++.+...+.                       .+.+. .+..++.+++.+...|...++..|.+|++       ++.+.+
T Consensus       337 ~~~~~~~~~-----------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  385 (438)
T 3o7q_A          337 ALCLISAFA-----------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS  385 (438)
T ss_dssp             HHHHHHHHC-----------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred             HHHHHHHHc-----------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence            776666544                       22332 33447788888888899999989999855       556666


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHH
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVV  230 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~  230 (559)
                      +.. ...+|+.++|.+.|++.+..| ++..|.+.+++.++.++
T Consensus       386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            555 556999999999999999988 99999877655544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.41  E-value=4.5e-13  Score=141.44  Aligned_cols=179  Identities=15%  Similarity=0.135  Sum_probs=148.9

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhcc-chhHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYL-GRYWTIAIFSIIYV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~~~~~~  108 (559)
                      |.++.+++..++....++++..++|.|+++.+|++..+.+.+.+...++..++.++.|+++||+. |||+.+..+.++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            45778888888888999999999999999889999999999999999999999999999999942 78888877776655


Q ss_pred             -HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          109 -IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                       ++.+.+.+.   +                  ..+.+.+.+..++.|++.+...+...+++.|.+|+++      |++++
T Consensus       332 ~~~~~~~~~~---~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  384 (451)
T 1pw4_A          332 TIATIVYWMN---P------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA  384 (451)
T ss_dssp             HHHHHHTTSC---C------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHH
T ss_pred             HHHHHHHHHh---c------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHH
Confidence             554444332   1                  1245666777788888888888888899999999987      99999


Q ss_pred             hhhhHHHhH-HHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623          188 NWFYFSINI-GALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG  235 (559)
Q Consensus       188 ~~~~~~~~i-G~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~  235 (559)
                      ++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus       385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 999999999999999999999998887776666655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.33  E-value=2.7e-12  Score=135.18  Aligned_cols=177  Identities=7%  Similarity=-0.006  Sum_probs=129.6

Q ss_pred             chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCC---hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623           31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQS---SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY  107 (559)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  107 (559)
                      .++..++..++....++.+..++|.|+.+.++..   ....+...+...+...++.++.|+++||+ |||++++.+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence            3454444445555556666677899987766532   34456667777778888899999999999 9999998888777


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623          108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF  187 (559)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (559)
                      +++.+...+.                       .+.+.+.+...+.+++.+...+....+.+|.+|++.      |+++.
T Consensus       300 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~  350 (417)
T 2cfq_A          300 SVRIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIY  350 (417)
T ss_dssp             HHHHHHHTTC-----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred             HHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence            7765555433                       234455555566666666555666789999999886      89998


Q ss_pred             hh-hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623          188 NW-FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       188 ~~-~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                      ++ ++...++|+.++|.++|++.+..|++..|.+.+++.+++.+..+...+
T Consensus       351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            88 588888999999999999998888888888877776666665544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.19  E-value=8.7e-11  Score=125.68  Aligned_cols=185  Identities=11%  Similarity=0.011  Sum_probs=136.6

Q ss_pred             hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHH-----HHHHH
Q 008623           32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIA-----IFSII  106 (559)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~  106 (559)
                      .+.+....++....+.....+++.|.++.++.+..+.+.+.....+...++.++.|++.||+ |||+...     .+.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44455556666666777778899999998888877888888889999999999999999998 9986554     66666


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623          107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF  186 (559)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (559)
                      ..++.+.+........              .....+.+.+.+..++.|++.+...+...+++.|.+|++.      |+++
T Consensus       364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  423 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQM  423 (491)
T ss_dssp             HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSS
T ss_pred             HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence            6666655544311000              0011245566777788999999989999999999999997      9999


Q ss_pred             hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccc
Q 008623          187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRL  238 (559)
Q Consensus       187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~  238 (559)
                      .++++...++|..++|.+.+++.+ .++.+.|.+.+...+++.+..++..++
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988875 467777777776666666555555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.02  E-value=8e-10  Score=118.07  Aligned_cols=183  Identities=11%  Similarity=0.017  Sum_probs=121.6

Q ss_pred             hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623           33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT  112 (559)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  112 (559)
                      .......++.....+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence            3333333443333333333344455567788888877778888889999999999999999 999999999888777776


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623          113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF  192 (559)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (559)
                      .+.......                  ......+....+..........|..+.+.+|.+|.+.      |+++.++.+.
T Consensus       358 ~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~  413 (491)
T 4gc0_A          358 SLGTAFYTQ------------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVA  413 (491)
T ss_dssp             HHHHHHHTT------------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHHHHHH
T ss_pred             HHHHHHhcc------------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHHHHHH
Confidence            665442111                  1122222222222222223345677789999999998      9999999999


Q ss_pred             HHhHHHHHHhhhhhhhcc------ccCchhhhHHHHHHHHHHHHHHHhcccccc
Q 008623          193 SINIGALIASSVLVWIQD------NEGWGWGFGIPAVAMAIAVVSFFSGTRLFR  240 (559)
Q Consensus       193 ~~~iG~~igp~i~~~l~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~  240 (559)
                      ...+|+.+++.+.+.+.+      ..++..+|++.+.+.+++.+..++..|+.+
T Consensus       414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999887766543      234566777777777777666666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.88  E-value=2.2e-10  Score=118.03  Aligned_cols=164  Identities=13%  Similarity=-0.004  Sum_probs=127.0

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH-HH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII-YV  108 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~  108 (559)
                      |.++...+..++.....+.+..++|.|+++++|.++.+.+.+.+...++..++.++.|++.||+ |++  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4567777788888888888899999999988999999999999999999999999999999998 872  2333322 22


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623          109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN  188 (559)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (559)
                      .+........                   ....+.+.+.+..++.|++.+...+...++..|.+| ++      |+++.+
T Consensus       276 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g  329 (375)
T 2gfp_A          276 AGLLMWIPDW-------------------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA  329 (375)
T ss_dssp             TSSSSSHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred             HHHHHHHHhh-------------------hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence            2222111110                   001245556677788899999999999999999988 54      899999


Q ss_pred             hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHH
Q 008623          189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPA  222 (559)
Q Consensus       189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~  222 (559)
                      +.+...++|..++|.+.+.+.+..+|...+.+.+
T Consensus       330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999988777877766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.23  E-value=7.7e-07  Score=95.73  Aligned_cols=149  Identities=11%  Similarity=0.029  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHh----Hhccch----hHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccC
Q 008623           68 ASKNVLDWSGTCYITPLIGAFLA----DAYLGR----YWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVT  139 (559)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (559)
                      .+.+.....+...+..++.+++.    ||. |+    ++.+..+.++..++.+.+.+......              ...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~  401 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD--------------GGS  401 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT--------------TTC
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCC
Confidence            44444444455556666666653    444 43    34566677666666665544310000              001


Q ss_pred             cchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc--Cc---
Q 008623          140 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE--GW---  214 (559)
Q Consensus       140 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~--g~---  214 (559)
                      ..+.+.+.+..++.|++.+...+...++..|.+|++.      |++++++++...++|+.++|.+.+.+.+..  +|   
T Consensus       402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~  475 (524)
T 2xut_A          402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQ  475 (524)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            1245566677888999999999999999999999987      999999999999999999999999887743  12   


Q ss_pred             ------hhhhHHHHHHHHHHHHHHHhccc
Q 008623          215 ------GWGFGIPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       215 ------~~~f~i~~~~~~i~~~~~~~~~~  237 (559)
                            +..|++.+.+.+++.+..++..+
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          476 TGMSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                  22355555555555554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	559
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 26/207 (12%)

Query: 28  TWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGA 87
             K   +I        L  YG+      Y K     +   +S     +        L+  
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306

Query: 88  FLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFF 147
           +++D              + ++ +  +    + +G                         
Sbjct: 307 WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG-------------------NPTVDM 347

Query: 148 VALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV- 206
           + + +I     G    +  +  +         KK   +   +      +G  +A+S +V 
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAP------KKAAGTAAGFTGLFGYLGGSVAASAIVG 401

Query: 207 WIQDNEGWGWGFGIPAVAMAIAVVSFF 233
           +  D  GW  GF +      +AV+   
Sbjct: 402 YTVDFFGWDGGFMVMIGGSILAVILLI 428

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	559
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.87
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.39
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.3

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4e-24  Score=223.03  Aligned_cols=159  Identities=14%  Similarity=0.112  Sum_probs=132.8

Q ss_pred             hhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Q 008623           51 TNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGP  130 (559)
Q Consensus        51 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (559)
                      ..+..+++ ++|++.++.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++++++....         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            34445775 5899999999999999999999999999999999 999999999999888888776652111         


Q ss_pred             CCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcc
Q 008623          131 RGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD  210 (559)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~  210 (559)
                                .+.+.+++.|++.|++.+...+...++++|++|+++      |++++++.+.+.++|..++|.+++.+..
T Consensus       114 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         114 ----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             ----------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             ----------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhh
Confidence                      246778999999999999999999999999999987      9999999999999999999988887665


Q ss_pred             c-cCchhhhHHHHHHHHHHHHHHHhcc
Q 008623          211 N-EGWGWGFGIPAVAMAIAVVSFFSGT  236 (559)
Q Consensus       211 ~-~g~~~~f~i~~~~~~i~~~~~~~~~  236 (559)
                      . .+|++.|++.+...++..+..+...
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhc
Confidence            4 4699999888766655544444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.3e-22  Score=202.99  Aligned_cols=370  Identities=9%  Similarity=-0.071  Sum_probs=211.4

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.+|.+....++.........+.+|.|+++++|.|.++.|++.+.+.+...++.++.|+++||+ ||||+++++.++..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5678888888888888888889999999999999999999999999999999999999999999 999999999888777


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      +.....+....+                   ......++.+.+.+.+.+...........+..+++    .+++....+.
T Consensus        86 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  142 (417)
T d1pv7a_          86 MFAPFFIFIFGP-------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR  142 (417)
T ss_dssp             THHHHHHHTHHH-------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHH
T ss_pred             HHHHHHHhhhhh-------------------hHHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHH
Confidence            777766552100                   11112233333333333333333222222222221    1235666777


Q ss_pred             hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhccccCCC
Q 008623          190 FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPA  269 (559)
Q Consensus       190 ~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (559)
                      .......+..++|.+++.+.+. +|+..+........+..+..++..++....++++++.+           .       
T Consensus       143 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-------  203 (417)
T d1pv7a_         143 ARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-----------A-------  203 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------S-------
T ss_pred             Hhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------h-------
Confidence            7788889999999999988764 44545554444443333333333322211111110000           0       


Q ss_pred             ccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008623          270 DKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVY  349 (559)
Q Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  349 (559)
                                            ..+.....+...    .             . ...........   ............
T Consensus       204 ----------------------~~~~~~~~~~~~----~-------------~-~~~~~~~~~~~---~~~~~~~~~~~~  240 (417)
T d1pv7a_         204 ----------------------NHSAFSLKLALE----L-------------F-RQPKLWFLSLY---VIGVSCTYDVFD  240 (417)
T ss_dssp             ----------------------CCCCCCHHHHHH----H-------------T-TSSHHHHHHHH---HHHHHHHHHHHH
T ss_pred             ----------------------hccccccccccc----c-------------c-ccccccchhhh---hHHHHHHHHhhh
Confidence                                  000000000000    0             0 00000111111   111111111111


Q ss_pred             cccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 008623          350 SQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSM  429 (559)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~  429 (559)
                      ..........    ....+  ..............+...+...+..+    +.+|       .++.+.+.++.++.+++.
T Consensus       241 ~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r-------~~~~~~~~~~~~~~~~~~  303 (417)
T d1pv7a_         241 QQFANFFTSF----FATGE--QGTRVFGYVTTMGELLNASIMFFAPL----IINR-------IGGKNALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHTTS----SSCHH--HHHHHHHHHHHHHHHHHHHHHTTHHH----HHHH-------HCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc----ccccc--cchhhhcccccccccccccchhhhhh----hhcc-------cccccchhhhHHHHHHhh
Confidence            1111111110    00000  00000111112222333333333333    4444       344566777777777777


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHH-HHHHHHHHH
Q 008623          430 IAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALS-LTTVALGNY  508 (559)
Q Consensus       430 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~  508 (559)
                      +.....                    .+.+.+.+..++.+++.+...+...+++.|..|++.||++.|+. ++..++|..
T Consensus       304 ~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (417)
T d1pv7a_         304 IGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI  363 (417)
T ss_dssp             HHHHTC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred             hccccc--------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            666542                    35566677778899999999999999999999999999999985 567889999


Q ss_pred             HhhHHHHHhhhhhc
Q 008623          509 LSSLLVTIVTSIST  522 (559)
Q Consensus       509 lg~~l~~~v~~~~~  522 (559)
                      +++.+.|.+.+..+
T Consensus       364 i~~~~~G~l~~~~g  377 (417)
T d1pv7a_         364 FMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999987543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=4e-13  Score=138.56  Aligned_cols=179  Identities=14%  Similarity=0.059  Sum_probs=138.7

Q ss_pred             cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623           30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI  109 (559)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  109 (559)
                      |.++......++.....+++..+++.|+.+.++++..+.+.......+...++.+++|++.||+ +|++..........+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  327 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence            5577788888888889999999999999999999999999999999999999999999999998 876654444333222


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhh
Q 008623          110 GMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW  189 (559)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (559)
                      ..+.......                  ....+.+...+..++.|++.++..+....+..|.+|++.      |+++.++
T Consensus       328 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~  383 (447)
T d1pw4a_         328 VTIATIVYWM------------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF  383 (447)
T ss_dssp             HHHHHHHTTS------------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred             HHHHHHHHHh------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            2222222111                  112345666677777888888888888899999999987      9999999


Q ss_pred             hhHHHhH-HHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 008623          190 FYFSINI-GALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFF  233 (559)
Q Consensus       190 ~~~~~~i-G~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~  233 (559)
                      .+...++ |..++|.+.|++.+..||+..|.+.+.+.+++.++..
T Consensus       384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            9888887 4567899999999999999988877665555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.2e-13  Score=135.33  Aligned_cols=147  Identities=7%  Similarity=-0.034  Sum_probs=121.5

Q ss_pred             cCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCc
Q 008623           61 LDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTD  140 (559)
Q Consensus        61 lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (559)
                      .+.+....+.......+...++.++.|++.||+ |||+.+..+.++..++.+...+.                       
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-----------------------  309 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA-----------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred             cccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-----------------------
Confidence            344556677778888889999999999999999 99999999998888877777654                       


Q ss_pred             chhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhh-hHHHhHHHHHHhhhhhhhccccCchhhhH
Q 008623          141 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF-YFSINIGALIASSVLVWIQDNEGWGWGFG  219 (559)
Q Consensus       141 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~iG~~igp~i~~~l~~~~g~~~~f~  219 (559)
                      .+.+.+.+..++.|++.+...+...+++.|.+|++.      |++..+.. +....+|..++|.+.|++.|..|++.+|+
T Consensus       310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            346777778888999999999999999999999987      99999974 56778999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 008623          220 IPAVAMAIAVVSFFSGTR  237 (559)
Q Consensus       220 i~~~~~~i~~~~~~~~~~  237 (559)
                      +.+++.++..+...+..+
T Consensus       384 ~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         384 VLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            887766655555444443