Citrus Sinensis ID: 008627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV
cccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEHHHHHHHHcccccEEEEcccHHcccccHHHHHHHHHHHHHHHHccccc
ccccccccccEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEHHccccccccccccccHHHHccccccccHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHcEEEEcHHHHHHccHHHHHHHHHHHHHHHHHccccc
mdsrrssralidpkvrqvgfftnaplppdrtqsdppdpihstpladasspgnflspvmippprhpsssllprlphspsdafpppsptttttttslgdfsddvtaassppSAAAAAARVrgrgssvkqqgaassfpgggfevppsvkapssvpasglttvsvvklppgisenaggsvsVEVQsdralnskplkekTSKAERRAIQEAQRAAKAAAKAEgiktpaatalanakptkstrpspqrndspvVVAAsekkggdrsvekdrkkdvphprmqyddksrVQKLkkrsvvkptearNRVELFrhlpqyehgtqlpvlqskffqldtlhpaVYKVGLQylsgdicggNARCIAMLQAFQEAIRdystppaktlsrDLTAKISSYVSFlidcrplsvsMGNAIRFLKSQIAkipislsesEAKATLHSDIERFINEKIILADRVIVKHAVTkirdgdvlltyGSSSAVEMILQHAHELGKQFRVVIvdsrpkheGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASsvlsngtvcsRVGTACVAMVAYGFHIPV
mdsrrssralidpkvrqvgFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLppgisenaggsvsvevqsdralnskplkektskaERRAIQEAQRAAKAAakaegiktpaatalanakptkstrpspqrndspvvvaasekkggdrsvekdrkkdvphprmqyddksrvqklkkrsvvkptearnrVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINekiiladrvIVKHAvtkirdgdvLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIppprhpsssllprlphspsDAFpppsptttttttsLGDFSDDVTaassppsaaaaaarvrgrgssvKQQGAASSFPGGGFEvppsvkapssvpasGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSkaerraiqeaqraakaaakaeGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEgklllrrlvrkglSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV
***********************************************************************************************************************************************************************************************************************************************************************************************************VELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI**
**********IDPKVRQVGF*****************************************************************************************************************************************************************************************************************************************************************************************LFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV
********ALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPS*************TTSLGDFSDDVT*******************************PGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL***************************IKTPAATA********************************************HPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV
********ALIDPKVRQVGFFTNA*******************************PVMIPP**HPSSSLLPRLPHSPSD*****************************************************************************************************************************************************************************************************DDKSRVQKLKKRSVVKPT**RNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP*
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MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query559 2.2.26 [Sep-21-2011]
P41111523 Translation initiation fa yes no 0.588 0.629 0.428 6e-73
Q61749524 Translation initiation fa yes no 0.590 0.629 0.426 9e-72
Q3T058524 Translation initiation fa yes no 0.590 0.629 0.437 1e-71
Q63186524 Translation initiation fa yes no 0.590 0.629 0.421 7e-71
Q9UI10523 Translation initiation fa yes no 0.586 0.627 0.433 7e-71
Q54FM3619 Translation initiation fa yes no 0.525 0.474 0.442 4e-63
Q09924467 Probable translation init yes no 0.415 0.496 0.482 7e-63
P12754 651 Translation initiation fa yes no 0.449 0.385 0.403 2e-46
Q57586308 Putative translation init yes no 0.348 0.633 0.256 2e-16
O28242313 Putative translation init yes no 0.295 0.527 0.304 5e-16
>sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 Back     alignment and function desciption
 Score =  275 bits (704), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/369 (42%), Positives = 220/369 (59%), Gaps = 40/369 (10%)

Query: 197 KAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKG 256
           +AERRA QEA+RA K A K E                    P PQ + S    A     G
Sbjct: 100 RAERRAKQEAERALKQARKGE-----------------QGGPPPQASPS---TAGEAPAG 139

Query: 257 GDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEAR----NRVELFRHLPQYEHG 312
           G R  E            Q DD + +++L ++S  +    R    ++V LF HLPQY   
Sbjct: 140 GKRLTE----------HTQADDPTLLRRLVRKSERQQVPTRKDYGSKVSLFSHLPQYSRQ 189

Query: 313 TQLPVLQSKFFQL--DTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370
             L    +++  +    +HPA+ ++GLQY  G I G NARCIA+L+A Q+ I+DY+TPP 
Sbjct: 190 NSL----TQYMSIPSSVIHPAMVRLGLQYSQGLISGSNARCIALLRALQQVIQDYTTPPN 245

Query: 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIE 430
           + LSRDL  K+  Y+ FL  CRPLS SM NAI+FL  +I  +  +  E EAKA L +  +
Sbjct: 246 EELSRDLVNKLKPYICFLTQCRPLSASMYNAIKFLNKEITGVSSTKREEEAKAELQAAAD 305

Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490
           R++ EKI+LA + I++ A  KI +GDV+L YG SS V  ILQ A   G++FRVV+VDSRP
Sbjct: 306 RYVQEKIVLAAQAILRFASKKISNGDVILVYGCSSLVSRILQEAWSEGRKFRVVVVDSRP 365

Query: 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM 550
           + EG+ +LR LVR G+  +Y  I A SY++ EV++V LGA ++L+NG+V SRVGTA +A+
Sbjct: 366 RLEGRHMLRFLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLAL 425

Query: 551 VAYGFHIPV 559
           VA   ++PV
Sbjct: 426 VARAHNVPV 434
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Oryctolagus cuniculus (taxid: 9986)
>sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2 Back     alignment and function description
>sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 Back     alignment and function description
>sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 Back     alignment and function description
>sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 Back     alignment and function description
>sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 Back     alignment and function description
>sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 Back     alignment and function description
>sp|P12754|EI2BD_YEAST Translation initiation factor eIF-2B subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD2 PE=1 SV=1 Back     alignment and function description
>sp|Q57586|EI2B2_METJA Putative translation initiation factor eIF-2B subunit 2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0122 PE=3 SV=1 Back     alignment and function description
>sp|O28242|EI2B2_ARCFU Putative translation initiation factor eIF-2B subunit 2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2037 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query559
224127602634 predicted protein [Populus trichocarpa] 0.944 0.832 0.681 0.0
225451956650 PREDICTED: translation initiation factor 0.953 0.82 0.670 0.0
297801756641 eukaryotic translation initiation factor 0.960 0.837 0.657 0.0
15240967642 translation initiation factor eIF-2B del 0.964 0.839 0.663 0.0
255560374638 translation initiation factor 2b, delta 0.962 0.843 0.670 0.0
255541846 664 translation initiation factor 2b, delta 0.964 0.811 0.623 0.0
356551080659 PREDICTED: translation initiation factor 0.976 0.828 0.633 0.0
449440905651 PREDICTED: translation initiation factor 0.964 0.827 0.598 1e-179
356567176627 PREDICTED: translation initiation factor 0.948 0.845 0.674 1e-178
356573663 660 PREDICTED: translation initiation factor 0.967 0.819 0.640 1e-177
>gi|224127602|ref|XP_002329318.1| predicted protein [Populus trichocarpa] gi|222870772|gb|EEF07903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/571 (68%), Positives = 449/571 (78%), Gaps = 43/571 (7%)

Query: 1   MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPD-PIHSTP-----LADASSP--GN 52
           MD RR+ R + DPKVR+VGFFT+   PPDR+   PPD PI S P     + D+S P  GN
Sbjct: 1   MDPRRAPRTVSDPKVRKVGFFTD---PPDRSLWGPPDHPISSFPTSPPSIVDSSPPSAGN 57

Query: 53  FLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP-SPTTTTTTTSLGDFSDDVTAASSPPSA 111
            LSPVMIPPPRH S++L P L    ++ FPPP SPT ++        SDDV         
Sbjct: 58  SLSPVMIPPPRHSSATLSP-LRRDSAEFFPPPVSPTASS-------LSDDV--------- 100

Query: 112 AAAAARVRGRGSSVKQQGAASSFPGG-GFEVPPSVKAPSSVPASGLTTVSVVKLPPGISE 170
             A+A +R RG +     A+SS PGG GF++     A SSVPASGLTTVSVV     +  
Sbjct: 101 --ASAMMR-RGVA----AASSSLPGGLGFDIAAVKSAASSVPASGLTTVSVVN---NLPI 150

Query: 171 NAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANA 230
             GG V+VE+Q+D++  SK LKEKT+KAERRA+QEAQRAAKAAAKAEG KTPAA + A A
Sbjct: 151 EKGGGVAVEMQNDQSSRSKSLKEKTTKAERRALQEAQRAAKAAAKAEGGKTPAAASGAAA 210

Query: 231 KPTKS--TRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKR 288
               +   +P  Q+NDS   VA SEKKGGDR  EKDRKK+VP PRMQYDDKSRV+K K+R
Sbjct: 211 SAKSAKSVKPPSQKNDS-ATVAVSEKKGGDRPPEKDRKKEVPQPRMQYDDKSRVEKAKRR 269

Query: 289 SVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGN 348
           +VVK TEARNRVELFRHLPQYE  TQL  L+SKFF+LD +HPAVYKVGLQYLSGD+CGGN
Sbjct: 270 AVVKQTEARNRVELFRHLPQYERRTQLTELESKFFELDPMHPAVYKVGLQYLSGDVCGGN 329

Query: 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408
           ARCIAMLQAFQEAI+DYSTP  KTL+RDLTAKI SY+SFLI+CRPLS+SMGNAIRFLK++
Sbjct: 330 ARCIAMLQAFQEAIKDYSTPSEKTLARDLTAKIGSYLSFLIECRPLSISMGNAIRFLKNR 389

Query: 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVE 468
           IAK+P++LSE+E KATLHSDI+RFINEKIILAD+VIVKHAVTKI DGDVLLTYGS SAVE
Sbjct: 390 IAKLPLTLSEAEVKATLHSDIDRFINEKIILADKVIVKHAVTKISDGDVLLTYGSPSAVE 449

Query: 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528
           M+L HAHELGKQFRVV+VDSRPK EG+LLL RLV KG+ CTYTH+NAISYI+HEVTRVFL
Sbjct: 450 MVLLHAHELGKQFRVVVVDSRPKLEGQLLLHRLVGKGIDCTYTHVNAISYIMHEVTRVFL 509

Query: 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559
           GASSVLSNGTV SRVGTACVAMVA+ F +PV
Sbjct: 510 GASSVLSNGTVYSRVGTACVAMVAHAFRVPV 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225451956|ref|XP_002283177.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297801756|ref|XP_002868762.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] gi|297314598|gb|EFH45021.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240967|ref|NP_198680.1| translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] gi|10176832|dbj|BAB10154.1| unnamed protein product [Arabidopsis thaliana] gi|17064894|gb|AAL32601.1| Unknown protein [Arabidopsis thaliana] gi|31711742|gb|AAP68227.1| At5g38640 [Arabidopsis thaliana] gi|332006961|gb|AED94344.1| translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255560374|ref|XP_002521202.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] gi|223539567|gb|EEF41154.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255541846|ref|XP_002511987.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] gi|223549167|gb|EEF50656.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356551080|ref|XP_003543906.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|449440905|ref|XP_004138224.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] gi|449477110|ref|XP_004154932.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567176|ref|XP_003551797.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|356573663|ref|XP_003554977.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query559
TAIR|locus:2159868642 AT5G38640 "AT5G38640" [Arabido 0.751 0.654 0.660 1.3e-156
TAIR|locus:2028501666 AT1G48970 "AT1G48970" [Arabido 0.758 0.636 0.546 6.4e-125
UNIPROTKB|Q2QM52607 LOC_Os12g42260 "Initiation fac 0.703 0.647 0.593 3.5e-122
TAIR|locus:2051779 333 AT2G44070 "AT2G44070" [Arabido 0.415 0.696 0.754 1.1e-89
ZFIN|ZDB-GENE-030131-955541 eif2b4 "eukaryotic translation 0.601 0.621 0.433 1.2e-65
UNIPROTKB|F1NDW0503 EIF2B4 "Uncharacterized protei 0.518 0.576 0.463 4.2e-63
UNIPROTKB|F1PAD0525 EIF2B4 "Uncharacterized protei 0.518 0.552 0.447 6.9e-63
UNIPROTKB|E2R8W5546 EIF2B4 "Uncharacterized protei 0.518 0.531 0.447 1.1e-62
UNIPROTKB|A8JGW6434 EIF2B "Eukaryotic initiation f 0.465 0.599 0.498 6.1e-62
UNIPROTKB|P41111523 EIF2B4 "Translation initiation 0.588 0.629 0.417 9e-61
TAIR|locus:2159868 AT5G38640 "AT5G38640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1390 (494.4 bits), Expect = 1.3e-156, Sum P(2) = 1.3e-156
 Identities = 286/433 (66%), Positives = 328/433 (75%)

Query:   131 ASSFPGGGFEXXXXXXXXXXXXXXGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKP 190
             ASS PG G +              GLTTVSVV +PPG+SE A G   +EVQSD+    KP
Sbjct:   125 ASSLPGIGMDSMAAAKSSSVPAS-GLTTVSVVTMPPGLSEKASG---MEVQSDQ---KKP 177

Query:   191 LKEKTSXXXXXXXXXXXXXXXXXXXXXGIKT-P---AATALANAKPTKSTRPSPQRNDSP 246
             LKEKT+                     G K  P   A+ A  + K  K  + + Q+ND  
Sbjct:   178 LKEKTTKAERRAIQEAQRAAKAAAKADGGKVAPVSSASVASTSVKAAKPAKATSQKNDVA 237

Query:   247 VVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHL 306
             V   A+EKKGG    EKDRKKD PHPRMQYDD+SRV K K+R+VVK TEA+NRVELFRHL
Sbjct:   238 VATGAAEKKGGPS--EKDRKKDAPHPRMQYDDESRVVKAKRRAVVKQTEAKNRVELFRHL 295

Query:   307 PQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYS 366
             PQYEHGTQLP L++KFFQLD +HPAVYKVGLQYLSGDI GGNARCIAMLQAFQE ++DYS
Sbjct:   296 PQYEHGTQLPDLETKFFQLDPMHPAVYKVGLQYLSGDISGGNARCIAMLQAFQEVVKDYS 355

Query:   367 TPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLH 426
             TPP K+L+RD+TAKISSYVSFLI+CRPLS+SMGNAIRF+K++IAK+PI+LSESEAKATL 
Sbjct:   356 TPPEKSLNRDMTAKISSYVSFLIECRPLSISMGNAIRFVKNRIAKLPITLSESEAKATLQ 415

Query:   427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486
             SDIERFINEKII+AD VIVKHAVTKIRDGDVLLTYGS +AVEM++ HAHEL K+FRV++V
Sbjct:   416 SDIERFINEKIIVADTVIVKHAVTKIRDGDVLLTYGSPTAVEMVILHAHELRKKFRVLVV 475

Query:   487 DSRPKHEXXXXXXXXXXXXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA 546
             DSRPK E             +CTYTHINAISYI+HEVT+VFLGASSVLSNGTV SRVGTA
Sbjct:   476 DSRPKLEGQLLLRRLIKRGINCTYTHINAISYIMHEVTKVFLGASSVLSNGTVYSRVGTA 535

Query:   547 CVAMVAYGFHIPV 559
             CVAMVA  F +PV
Sbjct:   536 CVAMVANAFRVPV 548
GO:0003743 "translation initiation factor activity" evidence=ISS;IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA
GO:0005525 "GTP binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA
GO:0006413 "translational initiation" evidence=ISS
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0045947 "negative regulation of translational initiation" evidence=IBA
GO:0050790 "regulation of catalytic activity" evidence=IBA
TAIR|locus:2028501 AT1G48970 "AT1G48970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2QM52 LOC_Os12g42260 "Initiation factor 2 subunit family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2051779 AT2G44070 "AT2G44070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-955 eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDW0 EIF2B4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAD0 EIF2B4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8W5 EIF2B4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A8JGW6 EIF2B "Eukaryotic initiation factor" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|P41111 EIF2B4 "Translation initiation factor eIF-2B subunit delta" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1230028
hypothetical protein (634 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0022009302
hypothetical protein (343 aa)
    ••• 0.829
estExt_fgenesh4_pm.C_LG_VIII0284
hypothetical protein (343 aa)
    ••• 0.828
eugene3.00030772
hypothetical protein (464 aa)
    ••• 0.819
estExt_Genewise1_v1.C_290097
hypothetical protein (465 aa)
    ••• 0.818
estExt_fgenesh4_pm.C_LG_XIII0470
SubName- Full=Putative uncharacterized protein; (271 aa)
    ••  0.806
fgenesh4_pg.C_scaffold_1866000002
annotation not avaliable (150 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query559
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 2e-61
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 1e-45
PRK08535310 PRK08535, PRK08535, translation initiation factor 5e-24
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 1e-21
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 1e-14
PRK08335275 PRK08335, PRK08335, translation initiation factor 2e-10
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 6e-10
COG0182346 COG0182, COG0182, Predicted translation initiation 2e-08
PRK06372253 PRK06372, PRK06372, translation initiation factor 5e-07
PRK06371329 PRK06371, PRK06371, translation initiation factor 4e-06
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 1e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 5e-05
PRK05772363 PRK05772, PRK05772, translation initiation factor 6e-05
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 1e-04
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information 
 Score =  203 bits (519), Expect = 2e-61
 Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 5/214 (2%)

Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFL 405
           G  A  IA L+     I+D  TP       +L  ++ S + FLI  RP +VS+GNAI  L
Sbjct: 4   GSPAIAIAALEGLLLVIQDARTPT----VAELKEQLRSAIEFLISARPTAVSLGNAIDRL 59

Query: 406 KSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS 465
              I+++  S    EAK +L    + FI+E I  A R I   A   I+DGD +LT+ +S 
Sbjct: 60  LRIISELHSSSDVEEAKESLIEAADEFIDE-IEEARRKIGAIAAELIKDGDTILTHCNSG 118

Query: 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525
            V  +L+ AH+ GK+FRV++ +SRP+ +G+L  + LV+ G+  T    +A+ Y++ EV +
Sbjct: 119 TVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEVDK 178

Query: 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559
           V +GA  +L+NG + +++GT  +A++A   ++P 
Sbjct: 179 VIVGADRILANGGIANKIGTYQLALLAKAHNVPF 212

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 559
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
PRK00702 220 ribose-5-phosphate isomerase A; Provisional 96.39
TIGR00021 218 rpiA ribose 5-phosphate isomerase. This model desc 96.35
cd01398 213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 96.05
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 94.09
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 93.95
PRK10411240 DNA-binding transcriptional activator FucR; Provis 93.81
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 93.75
COG1349253 GlpR Transcriptional regulators of sugar metabolis 92.93
PRK13509251 transcriptional repressor UlaR; Provisional 92.29
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 91.68
PLN02384 264 ribose-5-phosphate isomerase 91.59
KOG0259 447 consensus Tyrosine aminotransferase [Amino acid tr 89.55
PRK13978 228 ribose-5-phosphate isomerase A; Provisional 89.12
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 88.02
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 84.38
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-86  Score=699.69  Aligned_cols=456  Identities=49%  Similarity=0.727  Sum_probs=360.5

Q ss_pred             CCCCCCCCCCC-CCCCCCCcCcccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCcccCCCCCCcc
Q 008627           37 DPIHSTPLADA-SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSA  111 (559)
Q Consensus        37 ~~~~~~~~~~~-~~~~~~~~~v~~p~~r-~~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (559)
                      |.++.+...+. ++.+|+++|+|||++| |.+|++..++-   +.......+..++        +.+.  ++...++.+.
T Consensus         3 d~~~tt~e~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~~--------~~~~--~p~~~t~s~~   72 (556)
T KOG1467|consen    3 DKNSTTDELSPIDKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQGE--------DKNA--EPKDLTASAK   72 (556)
T ss_pred             cccccccccCccchhhhccccccCccccccchHHHHHHHHHhhcCccccccccCCC--------cccc--Cccccccccc
Confidence            43444555555 5999999999999999 88888887761   1111111111000        1111  1222221111


Q ss_pred             ccccceecccCCcccccccccCCCCCCcCCCCCcCCCCCCCCCCCeeeeeecCCCCccccCCCccceeecccccCCCCcc
Q 008627          112 AAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL  191 (559)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (559)
                          +-.         ..+..|+|+||||+|...+.                      . .+.++..+......+.++..
T Consensus        73 ----~~~---------~~~~~s~~~~~~e~t~a~~a----------------------~-~~a~~s~~~~p~~~~~~ka~  116 (556)
T KOG1467|consen   73 ----QAR---------VAVKASLPKGGAELTVANKA----------------------A-AAAGSSATQSPKKEKPPKAG  116 (556)
T ss_pred             ----ccc---------cchhhcccCCcceecccccc----------------------h-hhhccccccCCcccCCcccc
Confidence                111         55688999999999977211                      0 11112223333334556777


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhccCCCCCCCCCCC-CCCCCccchhccccCCCCCccccccCCCCC
Q 008627          192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVP  270 (559)
Q Consensus       192 ~~~~~kAERRa~Qeaqraakaa~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  270 (559)
                      +.+.++||||+.||++||+|+++|+++...........+.+..+...|. .|+..+..+      +..- +-  .+.+++
T Consensus       117 ~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p~~t------~~~~-~~--~~~~~~  187 (556)
T KOG1467|consen  117 LAVPTRAERKAIQEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALPVTT------SVDQ-AL--KRRAVQ  187 (556)
T ss_pred             cccccHHHHhhHHHHHHHHHHhhhcccccccccccccccCcccccCCCccccccccccc------cccc-hH--Hhhccc
Confidence            8889999999999999999999999976421111111111111221222 222211111      1110 11  567889


Q ss_pred             CCCccccchHHHHhhhhccccCccccccccccccCCCCCccCCCcchhhhccCCCCCchHHHHHHHhhhcCCcccChHHH
Q 008627          271 HPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNAR  350 (559)
Q Consensus       271 ~p~~q~d~~~r~~k~~~~~vv~~~~~~~~v~lF~HL~~~~~~~~l~~l~~~~~~~~~VHPaVl~Lglq~~~~~I~GSnAr  350 (559)
                      +|.+|+|+..+.. ..|..|+.+     +|.+|+||+||++.+      ++|+..+.|||+|++||+||..++|.|+|+|
T Consensus       188 ~pq~q~kt~~~~~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaR  255 (556)
T KOG1467|consen  188 NPQNQAKTLASAS-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNAR  255 (556)
T ss_pred             chhhhhhhhcccC-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHH
Confidence            9999999877654 556666644     899999999999975      4466667799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 008627          351 CIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIE  430 (559)
Q Consensus       351 aiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id  430 (559)
                      ||+||++|++||+||++|++++|+|||..+|++++.||.+|||++++|||+|||||++|+.++.++++.|+|+.|++.|+
T Consensus       256 CIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~  335 (556)
T KOG1467|consen  256 CIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDID  335 (556)
T ss_pred             HHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627          431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY  510 (559)
Q Consensus       431 ~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy  510 (559)
                      +||+|+|..|++.|++++.++|+|||+||||++|++|+++|++||+.|++|+|+|+||||++||++|+++|.++||+|||
T Consensus       336 ~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctY  415 (556)
T KOG1467|consen  336 RFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTY  415 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627          511 THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV  559 (559)
Q Consensus       511 I~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV  559 (559)
                      +++++++|+|.+|++||||||+||+||.||+|+||++|||+|++|||||
T Consensus       416 v~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPV  464 (556)
T KOG1467|consen  416 VLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPV  464 (556)
T ss_pred             EEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCE
Confidence            9999999999999999999999999999999999999999999999997

>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query559
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 4e-12
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-11
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-10
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-10
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-10
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-10
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 7e-05
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 8e-05
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 2e-04
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure 
Iteration: 1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
            L + RP +VS+ NA+R++  +  KI  S      + +  + +  + FI+      +R I
Sbjct: 74  ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
            +    +I DGDV++T+  S A   +++ A E GK  +V++ ++RPK +           
Sbjct: 132 GEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552
                Y   +A  + +    +V +GA S+  NG V +++GTA +A+ A
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTA 239
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query559
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 1e-59
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 8e-23
3a11_A338 Translation initiation factor EIF-2B, delta subun; 2e-20
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 1e-12
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 4e-12
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 4e-11
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  199 bits (508), Expect = 1e-59
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 5/211 (2%)

Query: 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408
           A  +A ++   E ++       + L  +LT+ I +          ++VS G  +      
Sbjct: 21  ASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGV---DSSVAVSSGGELFLRFIS 77

Query: 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVE 468
           +A +  S   S+ K  +    E F+  +I L+   I     T I+DG  +LT+  S  V 
Sbjct: 78  LASLEYS-DYSKCKKIMIERGELFL-RRISLSRNKIADLCHTFIKDGATILTHAYSRVVL 135

Query: 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528
            +L+ A    K+F V + +S+P   GK + + L    +  T     A+ YI+ +   V +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIV 195

Query: 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559
           GA  V+ NG + +++GT  +A+ A   + P 
Sbjct: 196 GAEGVVENGGIINKIGTNQMAVCAKAQNKPF 226
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query559
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1w2w_B 191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.92
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.75
1uj6_A 227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 97.41
1m0s_A 219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 96.94
2f8m_A 244 Ribose 5-phosphate isomerase; structural genomics, 96.93
1lk5_A 229 D-ribose-5-phosphate isomerase; alpha/beta structu 96.85
3kwm_A 224 Ribose-5-phosphate isomerase A; structural genomic 96.68
3l7o_A 225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 96.34
1xtz_A 264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 96.16
2pjm_A 226 Ribose-5-phosphate isomerase A; 3D-structure, stru 96.16
1o8b_A 219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 96.05
3hhe_A 255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 96.03
3uw1_A 239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 95.18
4gmk_A 228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 83.75
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-50  Score=419.09  Aligned_cols=227  Identities=22%  Similarity=0.334  Sum_probs=214.2

Q ss_pred             chHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 008627          328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS  407 (559)
Q Consensus       328 VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~  407 (559)
                      ....+..++..+++|+|+|++++|++++.+|..++..+.+..    ..+|.+.|+..+++|.++||++++|+|+++++++
T Consensus        19 ~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~~~~~----~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~~~~   94 (338)
T 3a11_A           19 VVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATN----VDEFWKEMKQAAKILFETRPTAVSLPNALRYVMH   94 (338)
T ss_dssp             CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHCCCCS----HHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999987654    6789999999999999999999999999999999


Q ss_pred             HHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEc
Q 008627          408 QIAK-IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV  486 (559)
Q Consensus       408 ~I~~-l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVv  486 (559)
                      .+.. +....+.+++|+.|++.+++|++|. ..+++.|+++++++|++|++|||||||+||+.+|+.|+++|++|+|||+
T Consensus        95 ~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~v~  173 (338)
T 3a11_A           95 RGKIAYSSGADLEQLRFVIINAAKEFIHNS-EKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVT  173 (338)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence            8875 2234578899999999999999995 5789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627          487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV  559 (559)
Q Consensus       487 ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV  559 (559)
                      ||||++||+.+|++|.+.||+||||+|+|++|+|.+||+||||||+|++||+++||+|||++|++||+|||||
T Consensus       174 EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPf  246 (338)
T 3a11_A          174 ETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWT  246 (338)
T ss_dssp             CCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEE
T ss_pred             CCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 559
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 2e-31
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 2e-25
g1w2w.1 402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 3e-22
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 1e-15
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 3e-15
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  120 bits (303), Expect = 2e-31
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
           ++   P   S+ N  RF+             +  +  L S    F+   +  A R +   
Sbjct: 54  VVKVNPSMASLYNLARFI-----------PVTNRRDILKSRALEFLRR-MEEAKRELASI 101

Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
               I DGDV++T+  SS V  I++ A E  K+F+V++ +S P +EG  L R L   G+ 
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161

Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559
                   +     E +   +GA  +  +G V ++ GT  +A+  +   IP 
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPF 213
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query559
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
g1w2w.1 402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 95.61
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 95.32
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 94.98
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.8e-46  Score=380.95  Aligned_cols=220  Identities=23%  Similarity=0.321  Sum_probs=201.2

Q ss_pred             HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627          331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA  410 (559)
Q Consensus       331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~  410 (559)
                      ++..+..-+++|.|+|++++++++..+|...+.......    ..++.++|+..+++|.++||++++|.|++++++..+.
T Consensus        30 ~~~~v~~AI~~M~VRGAPaIgvaaa~glala~~~~~~~~----~~e~~~~L~~a~~~L~~aRPTAVnL~nAl~r~~~~~~  105 (340)
T d1t5oa_          30 NVEELADAIKKLAVRGAPALEAAGAYGIALAAREREFAD----VDELKEHLKKAADFLASTRPTAVNLFVGIERALNAAL  105 (340)
T ss_dssp             SHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSSCCSC----HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhHcCcccCcHHHHHHHHHHHHHHHHhhhcCC----chhhHHHHHHHHHHHHhcCccchhHHHHHHHHhhhhh
Confidence            455566778999999999999999999888777655433    5789999999999999999999999999999988775


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcH--------HHHHHHHHHHHhCCceE
Q 008627          411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFR  482 (559)
Q Consensus       411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~Ss--------tV~~iL~~A~e~Gk~Fr  482 (559)
                      .   ..+.+++++.+++.++.|++| +..+++.|+++++++|+||++|||||+|+        |++.+|+.||++|++|+
T Consensus       106 ~---~~s~~~~k~~ll~~a~~i~~e-~~~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~gta~~~i~~a~~~gk~~~  181 (340)
T d1t5oa_         106 K---GESVEEVKELALREAEKLAEE-DVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIR  181 (340)
T ss_dssp             T---CSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCE
T ss_pred             c---ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCEEEEecCCchhhhhhhhhHHHHHHHhhhCCccce
Confidence            3   346889999999999999987 56799999999999999999999999995        78999999999999999


Q ss_pred             EEEcCCCCCchHHH-HHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627          483 VVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV  559 (559)
Q Consensus       483 ViVvESRP~~EG~~-LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV  559 (559)
                      |||+||||++||.+ ++++|.+.||+||||+|+|++|+|++  ||+||||||+|++|| ++||+|||++|++||+|+|||
T Consensus       182 V~v~EsrP~~qG~rl~a~~L~~~gi~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG-~~nkiGT~~~A~~Ak~~~vP~  260 (340)
T d1t5oa_         182 VIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPF  260 (340)
T ss_dssp             EEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCE
T ss_pred             EEEEeccCccCchHHHHHHHHhcCCCcEEEechhHHHHhhccccceEeechheeehhc-ccccccHHHHHHHHHHhCCcE
Confidence            99999999999954 59999999999999999999999997  999999999999999 999999999999999999997
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure